GL192338.1 samtools variation 75746 75746 . . . alleles " T A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; synonymous GL192338.1 samtools variation 118435 118435 . . . alleles " A G"; frequencies " 0.596153846153846 0.403846153846154"; depth 156 ; unknown ; synonymous GL192338.1 samtools variation 129453 129453 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 65 ; unknown ; synonymous GL192338.1 samtools variation 195194 195194 . . . alleles " A G"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; non-synonymous GL192338.1 samtools variation 196218 196218 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; non-synonymous GL192338.1 samtools variation 196240 196240 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; synonymous GL192338.1 samtools variation 202554 202554 . . . alleles " C A"; frequencies " 0.317073170731707 0.682926829268293"; depth 41 ; unknown ; non-synonymous GL192338.1 samtools variation 212401 212401 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 20 ; unknown ; non-synonymous GL192338.1 samtools variation 257792 257792 . . . alleles " G A"; frequencies " 0.304347826086957 0.695652173913043"; depth 69 ; unknown ; synonymous GL192338.1 samtools variation 262075 262075 . . . alleles " C T"; frequencies " 0.775757575757576 0.224242424242424"; depth 165 ; unknown ; synonymous GL192338.1 samtools variation 271172 271172 . . . alleles " T C"; frequencies " 0.587209302325581 0.412790697674419"; depth 172 ; unknown ; synonymous GL192338.1 samtools variation 288511 288511 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192338.1 samtools variation 290204 290204 . . . alleles " A T"; frequencies " 0.545454545454545 0.454545454545455"; depth 55 ; unknown ; N/A GL192338.1 samtools variation 290222 290222 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 57 ; unknown ; N/A GL192338.1 samtools variation 292420 292420 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 77 ; unknown ; synonymous GL192338.1 samtools variation 294729 294729 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192338.1 samtools variation 684173 684173 . . . alleles " C T"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; non-synonymous GL192338.1 samtools variation 684177 684177 . . . alleles " G T"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; synonymous GL192338.1 samtools variation 705517 705517 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192338.1 samtools variation 2009822 2009822 . . . alleles " G T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192338.1 samtools variation 2009969 2009969 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; unknown ; N/A GL192338.1 samtools variation 2019862 2019862 . . . alleles " T A"; frequencies " 0.222222222222222 0.777777777777778"; depth 36 ; unknown ; N/A GL192338.1 samtools variation 2019870 2019870 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192338.1 samtools variation 2021036 2021036 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192338.1 samtools variation 2022130 2022130 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192338.1 samtools variation 2025912 2025912 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 69 ; unknown ; N/A GL192338.1 samtools variation 2025939 2025939 . . . alleles " A C"; frequencies " 0.783132530120482 0.216867469879518"; depth 83 ; unknown ; N/A GL192338.1 samtools variation 2026070 2026070 . . . alleles " T C"; frequencies " 0.243243243243243 0.756756756756757"; depth 74 ; unknown ; N/A GL192338.1 samtools variation 2026429 2026429 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL192338.1 samtools variation 2026487 2026487 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192338.1 samtools variation 2032775 2032775 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192338.1 samtools variation 2032932 2032932 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192338.1 samtools variation 2033149 2033149 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192338.1 samtools variation 2047236 2047236 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192338.1 samtools variation 2047354 2047354 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192338.1 samtools variation 2048803 2048803 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192338.1 samtools variation 2049260 2049260 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192338.1 samtools variation 2049580 2049580 . . . alleles " G A"; frequencies " 0.571428571428571 0.4"; depth 35 ; unknown ; N/A GL192338.1 samtools variation 2049669 2049669 . . . alleles " A C"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192338.1 samtools variation 2051034 2051034 . . . alleles " G A"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; unknown ; N/A GL192338.1 samtools variation 2051240 2051240 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192338.1 samtools variation 2054584 2054584 . . . alleles " G A"; frequencies " 0.488888888888889 0.511111111111111"; depth 45 ; unknown ; N/A GL192338.1 samtools variation 2054596 2054596 . . . alleles " G A"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL192338.1 samtools variation 2071341 2071341 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192338.1 samtools variation 2071994 2071994 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192338.1 samtools variation 2659241 2659241 . . . alleles " C A"; frequencies " 0.753086419753086 0.246913580246914"; depth 81 ; unknown ; N/A GL192338.1 samtools variation 2659331 2659331 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; N/A GL192338.1 samtools variation 2662055 2662055 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192338.1 samtools variation 2734940 2734940 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; known ; non-synonymous GL192338.1 samtools variation 3049168 3049168 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 96 ; unknown ; N/A GL192338.1 samtools variation 3083584 3083584 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192338.1 samtools variation 3097647 3097647 . . . alleles " G T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192338.1 samtools variation 3097823 3097823 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192338.1 samtools variation 3098501 3098501 . . . alleles " T C"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; known ; N/A GL192338.1 samtools variation 3113923 3113923 . . . alleles " G A"; frequencies " 0.626582278481013 0.373417721518987"; depth 158 ; unknown ; synonymous GL192338.1 samtools variation 3114013 3114013 . . . alleles " T C"; frequencies " 0.63013698630137 0.36986301369863"; depth 73 ; known ; synonymous GL192338.1 samtools variation 3114463 3114463 . . . alleles " A G"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; unknown ; synonymous GL192338.1 samtools variation 3114639 3114639 . . . alleles " A G"; frequencies " 0.674418604651163 0.325581395348837"; depth 129 ; known ; non-synonymous GL192338.1 samtools variation 3114789 3114789 . . . alleles " T G"; frequencies " 0.713333333333333 0.286666666666667"; depth 150 ; known ; non-synonymous GL192338.1 samtools variation 3114936 3114936 . . . alleles " G T"; frequencies " 0.294545454545455 0.705454545454545"; depth 275 ; known ; non-synonymous GL192338.1 samtools variation 3115246 3115246 . . . alleles " T C"; frequencies " 0.483660130718954 0.516339869281046"; depth 306 ; known ; synonymous GL192338.1 samtools variation 3116637 3116637 . . . alleles " A G"; frequencies " 0.548192771084337 0.451807228915663"; depth 166 ; known ; non-synonymous GL192338.1 samtools variation 3123701 3123701 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192338.1 samtools variation 3126416 3126416 . . . alleles " C T"; frequencies " 0.481481481481481 0.518518518518518"; depth 54 ; unknown ; N/A GL192338.1 samtools variation 3137372 3137372 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192338.1 samtools variation 3140150 3140150 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 50 ; unknown ; non-synonymous GL192338.1 samtools variation 3143668 3143668 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192338.1 samtools variation 3155215 3155215 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192338.1 samtools variation 3156742 3156742 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192338.1 samtools variation 3156762 3156762 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192338.1 samtools variation 3160735 3160735 . . . alleles " C T"; frequencies " 0.622222222222222 0.377777777777778"; depth 45 ; unknown ; N/A GL192338.1 samtools variation 3164287 3164287 . . . alleles " A G"; frequencies " 0.78781512605042 0.21218487394958"; depth 476 ; unknown ; N/A GL192338.1 samtools variation 3166647 3166647 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192338.1 samtools variation 3186356 3186356 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; non-synonymous GL192338.1 samtools variation 3186448 3186448 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; synonymous GL192338.1 samtools variation 3204645 3204645 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192338.1 samtools variation 3204647 3204647 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192338.1 samtools variation 3205141 3205141 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192338.1 samtools variation 3205222 3205222 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; non-synonymous GL192338.1 samtools variation 3205385 3205385 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192338.1 samtools variation 3208981 3208981 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192338.1 samtools variation 3223372 3223372 . . . alleles " G A"; frequencies " 0.658333333333333 0.341666666666667"; depth 720 ; unknown ; synonymous GL192338.1 samtools variation 3241565 3241565 . . . alleles " C G"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; N/A GL192338.1 samtools variation 3261361 3261361 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192338.1 samtools variation 3261720 3261720 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192338.1 samtools variation 3299274 3299274 . . . alleles " A G"; frequencies " 0.765625 0.234375"; depth 64 ; unknown ; N/A GL192338.1 samtools variation 3310916 3310916 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 60 ; unknown ; N/A GL192338.1 samtools variation 3311047 3311047 . . . alleles " C T"; frequencies " 0.710526315789474 0.289473684210526"; depth 76 ; known ; N/A GL192338.1 samtools variation 3311129 3311129 . . . alleles " A T"; frequencies " 0.253968253968254 0.746031746031746"; depth 63 ; known ; N/A GL192338.1 samtools variation 3446123 3446123 . . . alleles " C A"; frequencies " 0.72 0.28"; depth 100 ; unknown ; synonymous GL192338.1 samtools variation 3454052 3454052 . . . alleles " A C"; frequencies " 0.211764705882353 0.788235294117647"; depth 85 ; unknown ; non-synonymous GL192338.1 samtools variation 3454144 3454144 . . . alleles " C A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192338.1 samtools variation 3529374 3529374 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL192338.1 samtools variation 3536342 3536342 . . . alleles " C T"; frequencies " 0.708860759493671 0.291139240506329"; depth 79 ; known ; synonymous GL192338.1 samtools variation 3539096 3539096 . . . alleles " G A"; frequencies " 0.754098360655738 0.245901639344262"; depth 61 ; known ; non-synonymous GL192338.1 samtools variation 3540940 3540940 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192338.1 samtools variation 3606663 3606663 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192338.1 samtools variation 3606758 3606758 . . . alleles " T C"; frequencies " 0.471910112359551 0.528089887640449"; depth 89 ; known ; N/A GL192338.1 samtools variation 3606884 3606884 . . . alleles " T C"; frequencies " 0.588785046728972 0.411214953271028"; depth 107 ; known ; N/A GL192338.1 samtools variation 3606962 3606962 . . . alleles " G T"; frequencies " 0.405172413793103 0.594827586206897"; depth 116 ; known ; N/A GL192338.1 samtools variation 3607395 3607395 . . . alleles " G A"; frequencies " 0.289473684210526 0.710526315789474"; depth 152 ; known ; N/A GL192338.1 samtools variation 3630983 3630983 . . . alleles " G A"; frequencies " 0.426470588235294 0.573529411764706"; depth 68 ; unknown ; synonymous GL192338.1 samtools variation 3631121 3631121 . . . alleles " G A"; frequencies " 0.732673267326733 0.267326732673267"; depth 101 ; unknown ; N/A GL192338.1 samtools variation 3631220 3631220 . . . alleles " G A"; frequencies " 0.767676767676768 0.232323232323232"; depth 99 ; unknown ; N/A GL192338.1 samtools variation 3631483 3631483 . . . alleles " T C"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; known ; N/A GL192338.1 samtools variation 3631628 3631628 . . . alleles " G A"; frequencies " 0.43859649122807 0.56140350877193"; depth 57 ; unknown ; N/A GL192338.1 samtools variation 3633091 3633091 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 30 ; known ; N/A GL192338.1 samtools variation 3654211 3654211 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; synonymous GL192338.1 samtools variation 3659331 3659331 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 32 ; unknown ; N/A GL192338.1 samtools variation 3673542 3673542 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; synonymous GL192338.1 samtools variation 3682125 3682125 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; synonymous GL192338.1 samtools variation 3682173 3682173 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; synonymous GL192338.1 samtools variation 3682327 3682327 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; synonymous GL192338.1 samtools variation 3852305 3852305 . . . alleles " C A"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL192338.1 samtools variation 3854406 3854406 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; non-synonymous GL192338.1 samtools variation 3871945 3871945 . . . alleles " C T"; frequencies " 0.725 0.275"; depth 40 ; unknown ; N/A GL192338.1 samtools variation 3872228 3872228 . . . alleles " G A"; frequencies " 0.55952380952381 0.44047619047619"; depth 84 ; unknown ; synonymous GL192338.1 samtools variation 3872627 3872627 . . . alleles " A G"; frequencies " 0.671641791044776 0.328358208955224"; depth 134 ; unknown ; N/A GL192338.1 samtools variation 3952625 3952625 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192338.1 samtools variation 3968634 3968634 . . . alleles " A G"; frequencies " 0.423076923076923 0.576923076923077"; depth 52 ; unknown ; N/A GL192338.1 samtools variation 4158905 4158905 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192338.1 samtools variation 4248763 4248763 . . . alleles " A G"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; known ; non-synonymous GL192338.1 samtools variation 4249957 4249957 . . . alleles " C T"; frequencies " 0.687022900763359 0.312977099236641"; depth 131 ; unknown ; N/A GL192338.1 samtools variation 4293196 4293196 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192338.1 samtools variation 4381139 4381139 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; N/A GL192338.1 samtools variation 4381304 4381304 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 75 ; unknown ; N/A GL192338.1 samtools variation 4381923 4381923 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192338.1 samtools variation 4382005 4382005 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192338.1 samtools variation 4382031 4382031 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192338.1 samtools variation 4382199 4382199 . . . alleles " C T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192338.1 samtools variation 4399434 4399434 . . . alleles " G A"; frequencies " 0.748091603053435 0.251908396946565"; depth 262 ; unknown ; N/A GL192338.1 samtools variation 4423781 4423781 . . . alleles " C T"; frequencies " 0.539184952978056 0.460815047021944"; depth 319 ; unknown ; N/A GL192339.1 samtools variation 143701 143701 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; non-synonymous GL192339.1 samtools variation 149277 149277 . . . alleles " A C"; frequencies " 0.725 0.275"; depth 40 ; unknown ; N/A GL192339.1 samtools variation 152214 152214 . . . alleles " G C"; frequencies " 0.664788732394366 0.335211267605634"; depth 355 ; unknown ; N/A GL192339.1 samtools variation 152350 152350 . . . alleles " G A"; frequencies " 0.669703872437358 0.330296127562642"; depth 439 ; unknown ; N/A GL192339.1 samtools variation 153190 153190 . . . alleles " T C"; frequencies " 0.686192468619247 0.313807531380753"; depth 239 ; unknown ; N/A GL192339.1 samtools variation 156953 156953 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192339.1 samtools variation 202242 202242 . . . alleles " T A"; frequencies " 0.575242718446602 0.424757281553398"; depth 412 ; unknown ; synonymous GL192339.1 samtools variation 221407 221407 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192339.1 samtools variation 232123 232123 . . . alleles " C A"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; N/A GL192339.1 samtools variation 416866 416866 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192339.1 samtools variation 476366 476366 . . . alleles " T G"; frequencies " 0.773809523809524 0.226190476190476"; depth 252 ; unknown ; N/A GL192339.1 samtools variation 516953 516953 . . . alleles " A G"; frequencies " 0.214814814814815 0.785185185185185"; depth 270 ; unknown ; synonymous GL192339.1 samtools variation 683364 683364 . . . alleles " C A"; frequencies " 0.326732673267327 0.673267326732673"; depth 202 ; unknown ; N/A GL192339.1 samtools variation 690874 690874 . . . alleles " A G"; frequencies " 0.404255319148936 0.595744680851064"; depth 47 ; unknown ; N/A GL192339.1 samtools variation 692862 692862 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192339.1 samtools variation 693714 693714 . . . alleles " G A"; frequencies " 0.407407407407407 0.555555555555556"; depth 27 ; unknown ; N/A GL192339.1 samtools variation 703549 703549 . . . alleles " G A"; frequencies " 0.540540540540541 0.459459459459459"; depth 148 ; unknown ; synonymous GL192339.1 samtools variation 703567 703567 . . . alleles " C T"; frequencies " 0.527777777777778 0.472222222222222"; depth 144 ; unknown ; synonymous GL192339.1 samtools variation 705381 705381 . . . alleles " T C"; frequencies " 0.468085106382979 0.531914893617021"; depth 47 ; unknown ; synonymous GL192339.1 samtools variation 707057 707057 . . . alleles " T C"; frequencies " 0.423076923076923 0.576923076923077"; depth 52 ; unknown ; synonymous GL192339.1 samtools variation 715904 715904 . . . alleles " A G"; frequencies " 0.439759036144578 0.560240963855422"; depth 166 ; unknown ; synonymous GL192339.1 samtools variation 716883 716883 . . . alleles " G C"; frequencies " 0.595238095238095 0.404761904761905"; depth 42 ; unknown ; N/A GL192339.1 samtools variation 717942 717942 . . . alleles " T G"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192339.1 samtools variation 731617 731617 . . . alleles " G T"; frequencies " 0.575342465753425 0.424657534246575"; depth 73 ; unknown ; non-synonymous GL192339.1 samtools variation 1111785 1111785 . . . alleles " G T"; frequencies " 0.771929824561403 0.228070175438596"; depth 57 ; unknown ; N/A GL192339.1 samtools variation 1112537 1112537 . . . alleles " A C"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; unknown ; N/A GL192339.1 samtools variation 1113176 1113176 . . . alleles " A G"; frequencies " 0.721311475409836 0.278688524590164"; depth 122 ; unknown ; N/A GL192339.1 samtools variation 1115308 1115308 . . . alleles " C G"; frequencies " 0.752577319587629 0.247422680412371"; depth 97 ; unknown ; N/A GL192339.1 samtools variation 1118949 1118949 . . . alleles " G A"; frequencies " 0.76271186440678 0.23728813559322"; depth 59 ; unknown ; N/A GL192339.1 samtools variation 1119923 1119923 . . . alleles " A G"; frequencies " 0.378787878787879 0.621212121212121"; depth 66 ; unknown ; N/A GL192339.1 samtools variation 1120980 1120980 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 108 ; unknown ; N/A GL192339.1 samtools variation 1122457 1122457 . . . alleles " C T"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL192339.1 samtools variation 1132420 1132420 . . . alleles " C G"; frequencies " 0.614173228346457 0.385826771653543"; depth 254 ; unknown ; N/A GL192339.1 samtools variation 1133635 1133635 . . . alleles " G A"; frequencies " 0.75531914893617 0.24468085106383"; depth 94 ; unknown ; N/A GL192339.1 samtools variation 1134249 1134249 . . . alleles " A G"; frequencies " 0.676056338028169 0.323943661971831"; depth 71 ; unknown ; N/A GL192339.1 samtools variation 1135458 1135458 . . . alleles " G A"; frequencies " 0.670454545454545 0.329545454545455"; depth 88 ; unknown ; N/A GL192339.1 samtools variation 1135625 1135625 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192339.1 samtools variation 1138323 1138323 . . . alleles " A T"; frequencies " 0.65891472868217 0.341085271317829"; depth 129 ; unknown ; N/A GL192339.1 samtools variation 1143439 1143439 . . . alleles " G A"; frequencies " 0.673684210526316 0.326315789473684"; depth 95 ; unknown ; N/A GL192339.1 samtools variation 1143492 1143492 . . . alleles " T C"; frequencies " 0.601941747572815 0.398058252427184"; depth 103 ; unknown ; N/A GL192339.1 samtools variation 1144809 1144809 . . . alleles " G C"; frequencies " 0.657894736842105 0.342105263157895"; depth 152 ; unknown ; N/A GL192339.1 samtools variation 1145033 1145033 . . . alleles " T G"; frequencies " 0.610169491525424 0.389830508474576"; depth 59 ; unknown ; N/A GL192339.1 samtools variation 1153180 1153180 . . . alleles " G A"; frequencies " 0.581818181818182 0.418181818181818"; depth 55 ; unknown ; N/A GL192339.1 samtools variation 1156864 1156864 . . . alleles " A G"; frequencies " 0.753424657534247 0.246575342465753"; depth 73 ; unknown ; N/A GL192339.1 samtools variation 1156899 1156899 . . . alleles " G A"; frequencies " 0.609375 0.390625"; depth 64 ; unknown ; N/A GL192339.1 samtools variation 1160883 1160883 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192339.1 samtools variation 1165203 1165203 . . . alleles " T G"; frequencies " 0.744444444444444 0.255555555555556"; depth 90 ; unknown ; N/A GL192339.1 samtools variation 1172109 1172109 . . . alleles " C T"; frequencies " 0.761627906976744 0.238372093023256"; depth 172 ; unknown ; N/A GL192339.1 samtools variation 1194241 1194241 . . . alleles " C A"; frequencies " 0.658823529411765 0.341176470588235"; depth 85 ; unknown ; N/A GL192339.1 samtools variation 1202895 1202895 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192339.1 samtools variation 1206023 1206023 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192339.1 samtools variation 1208642 1208642 . . . alleles " C T"; frequencies " 0.745697896749522 0.254302103250478"; depth 523 ; unknown ; synonymous GL192339.1 samtools variation 1210014 1210014 . . . alleles " A C"; frequencies " 0.684210526315789 0.315789473684211"; depth 209 ; unknown ; N/A GL192339.1 samtools variation 1267304 1267304 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192339.1 samtools variation 1272231 1272231 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; non-synonymous GL192339.1 samtools variation 1279677 1279677 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL192339.1 samtools variation 1281805 1281805 . . . alleles " C A"; frequencies " 0.256410256410256 0.743589743589744"; depth 39 ; unknown ; N/A GL192339.1 samtools variation 1533589 1533589 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192339.1 samtools variation 1533811 1533811 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 48 ; unknown ; N/A GL192339.1 samtools variation 1538999 1538999 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 217 ; unknown ; N/A GL192339.1 samtools variation 1539616 1539616 . . . alleles " C A"; frequencies " 0.725274725274725 0.274725274725275"; depth 91 ; unknown ; N/A GL192339.1 samtools variation 1541048 1541048 . . . alleles " A G"; frequencies " 0.785046728971963 0.214953271028037"; depth 214 ; unknown ; N/A GL192339.1 samtools variation 1673828 1673828 . . . alleles " C T"; frequencies " 0.797979797979798 0.202020202020202"; depth 297 ; unknown ; synonymous GL192339.1 samtools variation 1843977 1843977 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192339.1 samtools variation 1845724 1845724 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL192339.1 samtools variation 1848575 1848575 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 63 ; unknown ; N/A GL192339.1 samtools variation 1852089 1852089 . . . alleles " C T"; frequencies " 0.625628140703518 0.374371859296482"; depth 398 ; unknown ; synonymous GL192339.1 samtools variation 1852686 1852686 . . . alleles " G A"; frequencies " 0.265734265734266 0.734265734265734"; depth 143 ; unknown ; N/A GL192339.1 samtools variation 1860181 1860181 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL192339.1 samtools variation 1952678 1952678 . . . alleles " T C"; frequencies " 0.732673267326733 0.267326732673267"; depth 101 ; unknown ; N/A GL192339.1 samtools variation 1958493 1958493 . . . alleles " C T"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; unknown ; synonymous GL192339.1 samtools variation 1965384 1965384 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; non-synonymous GL192339.1 samtools variation 1977094 1977094 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192339.1 samtools variation 1995956 1995956 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; synonymous GL192339.1 samtools variation 1996197 1996197 . . . alleles " T C"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; synonymous GL192339.1 samtools variation 2109850 2109850 . . . alleles " T C"; frequencies " 0.366279069767442 0.633720930232558"; depth 344 ; known ; non-synonymous GL192339.1 samtools variation 2119752 2119752 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL192339.1 samtools variation 2127432 2127432 . . . alleles " T G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192339.1 samtools variation 2129293 2129293 . . . alleles " G A"; frequencies " 0.516372795969773 0.483627204030227"; depth 397 ; unknown ; N/A GL192339.1 samtools variation 2220221 2220221 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192339.1 samtools variation 2237613 2237613 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 77 ; known ; synonymous GL192339.1 samtools variation 2242345 2242345 . . . alleles " G A"; frequencies " 0.421052631578947 0.578947368421053"; depth 38 ; unknown ; N/A GL192339.1 samtools variation 2242644 2242644 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192339.1 samtools variation 2245666 2245666 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192339.1 samtools variation 2269696 2269696 . . . alleles " G C"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192339.1 samtools variation 2272196 2272196 . . . alleles " C A"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL192339.1 samtools variation 2272815 2272815 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 50 ; unknown ; N/A GL192339.1 samtools variation 2273483 2273483 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192339.1 samtools variation 2282860 2282860 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192339.1 samtools variation 2284202 2284202 . . . alleles " C T"; frequencies " 0.595238095238095 0.404761904761905"; depth 84 ; unknown ; N/A GL192339.1 samtools variation 2284885 2284885 . . . alleles " C T"; frequencies " 0.492063492063492 0.507936507936508"; depth 63 ; unknown ; N/A GL192339.1 samtools variation 2285532 2285532 . . . alleles " C T"; frequencies " 0.36734693877551 0.63265306122449"; depth 49 ; unknown ; N/A GL192339.1 samtools variation 2286118 2286118 . . . alleles " C T"; frequencies " 0.557692307692308 0.442307692307692"; depth 104 ; unknown ; N/A GL192339.1 samtools variation 2286467 2286467 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192339.1 samtools variation 2286548 2286548 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192339.1 samtools variation 2286832 2286832 . . . alleles " T C"; frequencies " 0.205882352941176 0.794117647058823"; depth 34 ; known ; N/A GL192339.1 samtools variation 2286856 2286856 . . . alleles " T C"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; unknown ; N/A GL192339.1 samtools variation 2287338 2287338 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192339.1 samtools variation 2287560 2287560 . . . alleles " C G"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; unknown ; N/A GL192339.1 samtools variation 2289347 2289347 . . . alleles " G A"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; synonymous GL192339.1 samtools variation 2302408 2302408 . . . alleles " G A"; frequencies " 0.756838905775076 0.243161094224924"; depth 329 ; known ; N/A GL192339.1 samtools variation 2306796 2306796 . . . alleles " G C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192339.1 samtools variation 2720014 2720014 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192339.1 samtools variation 2720776 2720776 . . . alleles " C T"; frequencies " 0.798206278026906 0.201046337817638"; depth 1338 ; unknown ; non-synonymous GL192339.1 samtools variation 2724291 2724291 . . . alleles " G A"; frequencies " 0.660377358490566 0.339622641509434"; depth 265 ; unknown ; N/A GL192339.1 samtools variation 2725659 2725659 . . . alleles " T C"; frequencies " 0.640239840106596 0.359760159893404"; depth 1501 ; unknown ; synonymous GL192339.1 samtools variation 2726883 2726883 . . . alleles " G A"; frequencies " 0.627423822714681 0.372576177285319"; depth 722 ; unknown ; synonymous GL192339.1 samtools variation 2727012 2727012 . . . alleles " A C"; frequencies " 0.363636363636364 0.545454545454545"; depth 11 ; unknown ; N/A GL192339.1 samtools variation 2727816 2727816 . . . alleles " A T"; frequencies " 0.323529411764706 0.676470588235294"; depth 34 ; unknown ; N/A GL192339.1 samtools variation 2727938 2727938 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192339.1 samtools variation 2728273 2728273 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192339.1 samtools variation 2733875 2733875 . . . alleles " G C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192339.1 samtools variation 2750401 2750401 . . . alleles " C T"; frequencies " 0.202898550724638 0.797101449275362"; depth 69 ; known ; N/A GL192339.1 samtools variation 2751119 2751119 . . . alleles " G A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192339.1 samtools variation 2752899 2752899 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192339.1 samtools variation 2756503 2756503 . . . alleles " T C"; frequencies " 0.313725490196078 0.686274509803922"; depth 51 ; known ; synonymous GL192339.1 samtools variation 2764556 2764556 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192339.1 samtools variation 2788640 2788640 . . . alleles " G A"; frequencies " 0.597222222222222 0.402777777777778"; depth 72 ; known ; non-synonymous GL192339.1 samtools variation 2788813 2788813 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; known ; non-synonymous GL192339.1 samtools variation 2843120 2843120 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192339.1 samtools variation 2984163 2984163 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; known ; N/A GL192339.1 samtools variation 2985626 2985626 . . . alleles " G T"; frequencies " 0.75886524822695 0.24113475177305"; depth 141 ; known ; N/A GL192339.1 samtools variation 2992030 2992030 . . . alleles " T C"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192339.1 samtools variation 3307683 3307683 . . . alleles " G A"; frequencies " 0.224806201550388 0.775193798449612"; depth 129 ; known ; synonymous GL192339.1 samtools variation 3308852 3308852 . . . alleles " A G"; frequencies " 0.210810810810811 0.789189189189189"; depth 185 ; known ; N/A GL192339.1 samtools variation 3312087 3312087 . . . alleles " G A"; frequencies " 0.351351351351351 0.648648648648649"; depth 37 ; unknown ; N/A GL192339.1 samtools variation 3314726 3314726 . . . alleles " A G"; frequencies " 0.797297297297297 0.202702702702703"; depth 74 ; unknown ; N/A GL192339.1 samtools variation 3317948 3317948 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 112 ; unknown ; N/A GL192339.1 samtools variation 3321724 3321724 . . . alleles " T C"; frequencies " 0.204545454545455 0.795454545454545"; depth 44 ; known ; N/A GL192339.1 samtools variation 3728502 3728502 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192339.1 samtools variation 3841890 3841890 . . . alleles " T C"; frequencies " 0.603550295857988 0.396449704142012"; depth 169 ; known ; N/A GL192339.1 samtools variation 3843302 3843302 . . . alleles " C T"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192339.1 samtools variation 3843422 3843422 . . . alleles " G A"; frequencies " 0.491686460807601 0.508313539192399"; depth 421 ; known ; synonymous GL192339.1 samtools variation 3888304 3888304 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; non-synonymous GL192339.1 samtools variation 3973308 3973308 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192339.1 samtools variation 3974375 3974375 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192339.1 samtools variation 3976421 3976421 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192339.1 samtools variation 3976547 3976547 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192339.1 samtools variation 3977097 3977097 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192339.1 samtools variation 3977252 3977252 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192339.1 samtools variation 3977593 3977593 . . . alleles " A G"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; known ; N/A GL192339.1 samtools variation 3979573 3979573 . . . alleles " G A"; frequencies " 0.781609195402299 0.218390804597701"; depth 87 ; known ; N/A GL192339.1 samtools variation 3979638 3979638 . . . alleles " G A"; frequencies " 0.781021897810219 0.218978102189781"; depth 137 ; unknown ; N/A GL192339.1 samtools variation 3993666 3993666 . . . alleles " A T"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192339.1 samtools variation 3993806 3993806 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192339.1 samtools variation 3994872 3994872 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192339.1 samtools variation 3994956 3994956 . . . alleles " G T"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; known ; N/A GL192339.1 samtools variation 3995077 3995077 . . . alleles " G C"; frequencies " 0.439024390243902 0.560975609756098"; depth 41 ; known ; N/A GL192339.1 samtools variation 3995391 3995391 . . . alleles " A G"; frequencies " 0.78 0.22"; depth 50 ; known ; non-synonymous GL192339.1 samtools variation 3998138 3998138 . . . alleles " G A"; frequencies " 0.368932038834951 0.631067961165049"; depth 103 ; known ; synonymous GL192339.1 samtools variation 4061463 4061463 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192339.1 samtools variation 4062251 4062251 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192339.1 samtools variation 4063174 4063174 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192339.1 samtools variation 4064402 4064402 . . . alleles " T A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192339.1 samtools variation 4154782 4154782 . . . alleles " C G"; frequencies " 0.32258064516129 0.67741935483871"; depth 155 ; known ; N/A GL192339.1 samtools variation 4163588 4163588 . . . alleles " T G"; frequencies " 0.798206278026906 0.201793721973094"; depth 223 ; unknown ; N/A GL192339.1 samtools variation 4189931 4189931 . . . alleles " T G"; frequencies " 0.608695652173913 0.391304347826087"; depth 46 ; unknown ; N/A GL192339.1 samtools variation 4280492 4280492 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; N/A GL192339.1 samtools variation 4300104 4300104 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192340.1 samtools variation 537 537 . . . alleles " C T"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL192340.1 samtools variation 4238 4238 . . . alleles " A G"; frequencies " 0.613333333333333 0.386666666666667"; depth 150 ; unknown ; synonymous GL192340.1 samtools variation 10984 10984 . . . alleles " G T"; frequencies " 0.731481481481482 0.268518518518519"; depth 216 ; unknown ; N/A GL192340.1 samtools variation 68110 68110 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192340.1 samtools variation 68526 68526 . . . alleles " G A"; frequencies " 0.790697674418605 0.209302325581395"; depth 86 ; unknown ; N/A GL192340.1 samtools variation 222415 222415 . . . alleles " G A"; frequencies " 0.303030303030303 0.696969696969697"; depth 66 ; unknown ; N/A GL192340.1 samtools variation 234169 234169 . . . alleles " C T"; frequencies " 0.639175257731959 0.360824742268041"; depth 97 ; unknown ; N/A GL192340.1 samtools variation 256525 256525 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192340.1 samtools variation 409019 409019 . . . alleles " C T"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; known ; synonymous GL192340.1 samtools variation 433704 433704 . . . alleles " G A"; frequencies " 0.716049382716049 0.283950617283951"; depth 162 ; unknown ; N/A GL192340.1 samtools variation 439744 439744 . . . alleles " G C"; frequencies " 0.528795811518325 0.471204188481675"; depth 191 ; known ; non-synonymous GL192340.1 samtools variation 705921 705921 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192340.1 samtools variation 858860 858860 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192340.1 samtools variation 882288 882288 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 20 ; known ; non-synonymous GL192340.1 samtools variation 1394336 1394336 . . . alleles " G C"; frequencies " 0.509433962264151 0.490566037735849"; depth 53 ; known ; non-synonymous GL192340.1 samtools variation 1612055 1612055 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192340.1 samtools variation 1612768 1612768 . . . alleles " C G"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL192340.1 samtools variation 1641215 1641215 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192340.1 samtools variation 1651532 1651532 . . . alleles " T C"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192340.1 samtools variation 1662091 1662091 . . . alleles " G A"; frequencies " 0.743243243243243 0.256756756756757"; depth 74 ; unknown ; N/A GL192340.1 samtools variation 1662135 1662135 . . . alleles " G A"; frequencies " 0.711864406779661 0.288135593220339"; depth 59 ; unknown ; N/A GL192340.1 samtools variation 1668308 1668308 . . . alleles " T C"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; known ; N/A GL192340.1 samtools variation 1682602 1682602 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL192340.1 samtools variation 3047243 3047243 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192340.1 samtools variation 3354335 3354335 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; synonymous GL192340.1 samtools variation 3405810 3405810 . . . alleles " G A"; frequencies " 0.310344827586207 0.689655172413793"; depth 58 ; known ; synonymous GL192340.1 samtools variation 3433739 3433739 . . . alleles " C T"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192340.1 samtools variation 3433826 3433826 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192340.1 samtools variation 3566704 3566704 . . . alleles " T C"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; synonymous GL192340.1 samtools variation 3599827 3599827 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 63 ; unknown ; non-synonymous GL192340.1 samtools variation 3818949 3818949 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192340.1 samtools variation 3988285 3988285 . . . alleles " A C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192340.1 samtools variation 3995906 3995906 . . . alleles " C T"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL192340.1 samtools variation 4041072 4041072 . . . alleles " G A"; frequencies " 0.69047619047619 0.30952380952381"; depth 84 ; unknown ; N/A GL192340.1 samtools variation 4041083 4041083 . . . alleles " T C"; frequencies " 0.697674418604651 0.302325581395349"; depth 86 ; unknown ; N/A GL192340.1 samtools variation 4041469 4041469 . . . alleles " G A"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; unknown ; N/A GL192340.1 samtools variation 4044174 4044174 . . . alleles " C T"; frequencies " 0.68780487804878 0.31219512195122"; depth 205 ; unknown ; synonymous GL192340.1 samtools variation 4044227 4044227 . . . alleles " A G"; frequencies " 0.675675675675676 0.324324324324324"; depth 185 ; unknown ; non-synonymous GL192340.1 samtools variation 4073230 4073230 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192340.1 samtools variation 4073956 4073956 . . . alleles " G C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192340.1 samtools variation 4075339 4075339 . . . alleles " G A"; frequencies " 0.620253164556962 0.379746835443038"; depth 79 ; unknown ; synonymous GL192340.1 samtools variation 4128615 4128615 . . . alleles " G A"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; non-synonymous GL192340.1 samtools variation 4246507 4246507 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192340.1 samtools variation 4252149 4252149 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192340.1 samtools variation 4721009 4721009 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; non-synonymous GL192340.1 samtools variation 4730611 4730611 . . . alleles " C T"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192340.1 samtools variation 4730617 4730617 . . . alleles " G A"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192340.1 samtools variation 4731456 4731456 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192340.1 samtools variation 4732446 4732446 . . . alleles " T A"; frequencies " 0.375 0.5625"; depth 16 ; unknown ; N/A GL192340.1 samtools variation 4733880 4733880 . . . alleles " G C"; frequencies " 0.323529411764706 0.676470588235294"; depth 34 ; unknown ; N/A GL192340.1 samtools variation 4734897 4734897 . . . alleles " G A"; frequencies " 0.242424242424242 0.757575757575758"; depth 33 ; unknown ; N/A GL192340.1 samtools variation 4736362 4736362 . . . alleles " C A"; frequencies " 0.363636363636364 0.636363636363636"; depth 33 ; unknown ; N/A GL192340.1 samtools variation 4736421 4736421 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 50 ; unknown ; N/A GL192340.1 samtools variation 4737090 4737090 . . . alleles " C T"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; synonymous GL192340.1 samtools variation 4737521 4737521 . . . alleles " A T"; frequencies " 0.372881355932203 0.627118644067797"; depth 59 ; unknown ; non-synonymous GL192340.1 samtools variation 4739354 4739354 . . . alleles " A C"; frequencies " 0.227272727272727 0.772727272727273"; depth 44 ; unknown ; N/A GL192340.1 samtools variation 4740513 4740513 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; unknown ; N/A GL192340.1 samtools variation 4741094 4741094 . . . alleles " C A"; frequencies " 0.212121212121212 0.787878787878788"; depth 33 ; unknown ; N/A GL192340.1 samtools variation 4741545 4741545 . . . alleles " C T"; frequencies " 0.261538461538462 0.738461538461539"; depth 65 ; unknown ; N/A GL192340.1 samtools variation 4743686 4743686 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL192340.1 samtools variation 4744366 4744366 . . . alleles " G T"; frequencies " 0.6875 0.3125"; depth 96 ; unknown ; N/A GL192340.1 samtools variation 4746563 4746563 . . . alleles " C T"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL192340.1 samtools variation 4748257 4748257 . . . alleles " A C"; frequencies " 0.462365591397849 0.537634408602151"; depth 93 ; unknown ; N/A GL192340.1 samtools variation 4748267 4748267 . . . alleles " A T"; frequencies " 0.525252525252525 0.474747474747475"; depth 99 ; unknown ; N/A GL192340.1 samtools variation 4763738 4763738 . . . alleles " G A"; frequencies " 0.338345864661654 0.661654135338346"; depth 266 ; unknown ; synonymous GL192340.1 samtools variation 4814204 4814204 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 33 ; unknown ; N/A GL192340.1 samtools variation 4816129 4816129 . . . alleles " T G"; frequencies " 0.2 0.8"; depth 35 ; unknown ; N/A GL192340.1 samtools variation 4825203 4825203 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192340.1 samtools variation 5153543 5153543 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192340.1 samtools variation 5169089 5169089 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192340.1 samtools variation 5185273 5185273 . . . alleles " G A"; frequencies " 0.674157303370786 0.325842696629214"; depth 89 ; unknown ; synonymous GL192340.1 samtools variation 5186708 5186708 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192340.1 samtools variation 5196115 5196115 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192340.1 samtools variation 5199816 5199816 . . . alleles " C T"; frequencies " 0.694029850746269 0.305970149253731"; depth 134 ; unknown ; N/A GL192340.1 samtools variation 5307247 5307247 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; synonymous GL192340.1 samtools variation 5314014 5314014 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 40 ; unknown ; synonymous GL192340.1 samtools variation 5316176 5316176 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192340.1 samtools variation 5320656 5320656 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192340.1 samtools variation 5323995 5323995 . . . alleles " G T"; frequencies " 0.743362831858407 0.256637168141593"; depth 113 ; known ; non-synonymous GL192340.1 samtools variation 5330511 5330511 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192340.1 samtools variation 5449245 5449245 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; known ; synonymous GL192341.1 samtools variation 1345684 1345684 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 65 ; unknown ; N/A GL192341.1 samtools variation 1346298 1346298 . . . alleles " C T"; frequencies " 0.367647058823529 0.632352941176471"; depth 68 ; unknown ; N/A GL192341.1 samtools variation 2314036 2314036 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192341.1 samtools variation 2315833 2315833 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 270 ; unknown ; N/A GL192341.1 samtools variation 4069330 4069330 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192341.1 samtools variation 4104926 4104926 . . . alleles " G T"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192341.1 samtools variation 4118684 4118684 . . . alleles " A G"; frequencies " 0.793103448275862 0.206896551724138"; depth 58 ; unknown ; N/A GL192341.1 samtools variation 4119112 4119112 . . . alleles " G C"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL192341.1 samtools variation 4246545 4246545 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 46 ; known ; non-synonymous GL192341.1 samtools variation 4258739 4258739 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192341.1 samtools variation 4260194 4260194 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL192341.1 samtools variation 4272783 4272783 . . . alleles " G A"; frequencies " 0.797752808988764 0.202247191011236"; depth 178 ; unknown ; N/A GL192341.1 samtools variation 4279129 4279129 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL192341.1 samtools variation 4598926 4598926 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192341.1 samtools variation 5358129 5358129 . . . alleles " T C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192342.1 samtools variation 419410 419410 . . . alleles " A G"; frequencies " 0.532994923857868 0.467005076142132"; depth 394 ; unknown ; non-synonymous GL192342.1 samtools variation 420362 420362 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192342.1 samtools variation 420448 420448 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192342.1 samtools variation 420778 420778 . . . alleles " T C"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192342.1 samtools variation 421208 421208 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192342.1 samtools variation 421791 421791 . . . alleles " T C"; frequencies " 0.554054054054054 0.445945945945946"; depth 74 ; unknown ; N/A GL192342.1 samtools variation 421881 421881 . . . alleles " G A"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; unknown ; N/A GL192342.1 samtools variation 444870 444870 . . . alleles " T A"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; unknown ; N/A GL192342.1 samtools variation 516774 516774 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192342.1 samtools variation 521410 521410 . . . alleles " C T"; frequencies " 0.561702127659575 0.438297872340426"; depth 235 ; unknown ; non-synonymous GL192342.1 samtools variation 531632 531632 . . . alleles " C A"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL192342.1 samtools variation 531641 531641 . . . alleles " A C"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; unknown ; N/A GL192342.1 samtools variation 535143 535143 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; synonymous GL192342.1 samtools variation 624020 624020 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192342.1 samtools variation 627252 627252 . . . alleles " A G"; frequencies " 0.338983050847458 0.661016949152542"; depth 59 ; unknown ; N/A GL192342.1 samtools variation 628585 628585 . . . alleles " A G"; frequencies " 0.32 0.68"; depth 50 ; unknown ; N/A GL192342.1 samtools variation 641921 641921 . . . alleles " G A"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL192342.1 samtools variation 931657 931657 . . . alleles " T C"; frequencies " 0.575 0.425"; depth 40 ; unknown ; synonymous GL192342.1 samtools variation 989097 989097 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 92 ; unknown ; synonymous GL192342.1 samtools variation 1019813 1019813 . . . alleles " G A"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL192342.1 samtools variation 1031561 1031561 . . . alleles " C A"; frequencies " 0.615384615384615 0.384615384615385"; depth 39 ; unknown ; N/A GL192342.1 samtools variation 1338403 1338403 . . . alleles " T C"; frequencies " 0.32258064516129 0.67741935483871"; depth 155 ; unknown ; N/A GL192342.1 samtools variation 1420428 1420428 . . . alleles " A G"; frequencies " 0.613725490196078 0.386274509803922"; depth 510 ; unknown ; N/A GL192342.1 samtools variation 1426003 1426003 . . . alleles " G C"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; unknown ; N/A GL192342.1 samtools variation 1430782 1430782 . . . alleles " C T"; frequencies " 0.267175572519084 0.732824427480916"; depth 131 ; unknown ; N/A GL192342.1 samtools variation 1430966 1430966 . . . alleles " A G"; frequencies " 0.576642335766423 0.423357664233577"; depth 137 ; unknown ; N/A GL192342.1 samtools variation 1431623 1431623 . . . alleles " T C"; frequencies " 0.680851063829787 0.319148936170213"; depth 47 ; unknown ; N/A GL192342.1 samtools variation 1438662 1438662 . . . alleles " T A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192342.1 samtools variation 1445080 1445080 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192342.1 samtools variation 2181183 2181183 . . . alleles " A G"; frequencies " 0.521739130434783 0.478260869565217"; depth 46 ; unknown ; synonymous GL192342.1 samtools variation 2188171 2188171 . . . alleles " A C"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; unknown ; synonymous GL192342.1 samtools variation 2201562 2201562 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192342.1 samtools variation 2203868 2203868 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; unknown ; N/A GL192342.1 samtools variation 2204970 2204970 . . . alleles " T C"; frequencies " 0.691358024691358 0.308641975308642"; depth 81 ; unknown ; N/A GL192342.1 samtools variation 2205712 2205712 . . . alleles " G C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192342.1 samtools variation 3278046 3278046 . . . alleles " G A"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL192342.1 samtools variation 3278183 3278183 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; unknown ; N/A GL192342.1 samtools variation 3462441 3462441 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192342.1 samtools variation 3496083 3496083 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192342.1 samtools variation 3496161 3496161 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192342.1 samtools variation 3500302 3500302 . . . alleles " T G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192342.1 samtools variation 3501002 3501002 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL192342.1 samtools variation 3501412 3501412 . . . alleles " C T"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192342.1 samtools variation 3503675 3503675 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192342.1 samtools variation 3505526 3505526 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192342.1 samtools variation 3506482 3506482 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192342.1 samtools variation 3517530 3517530 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192342.1 samtools variation 3579974 3579974 . . . alleles " C T"; frequencies " 0.365079365079365 0.634920634920635"; depth 63 ; unknown ; N/A GL192342.1 samtools variation 3581221 3581221 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 204 ; unknown ; N/A GL192342.1 samtools variation 3582068 3582068 . . . alleles " C A"; frequencies " 0.408163265306122 0.591836734693878"; depth 49 ; unknown ; N/A GL192342.1 samtools variation 3582249 3582249 . . . alleles " A G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192342.1 samtools variation 3582255 3582255 . . . alleles " T C"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL192342.1 samtools variation 3582316 3582316 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL192342.1 samtools variation 3583191 3583191 . . . alleles " T C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192342.1 samtools variation 3585281 3585281 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 51 ; unknown ; N/A GL192342.1 samtools variation 3585292 3585292 . . . alleles " A G"; frequencies " 0.224137931034483 0.758620689655172"; depth 58 ; unknown ; N/A GL192342.1 samtools variation 4391843 4391843 . . . alleles " A C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192342.1 samtools variation 4438771 4438771 . . . alleles " G A"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL192342.1 samtools variation 4565504 4565504 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192342.1 samtools variation 4631916 4631916 . . . alleles " C G"; frequencies " 0.669291338582677 0.330708661417323"; depth 127 ; unknown ; non-synonymous GL192342.1 samtools variation 4638751 4638751 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192342.1 samtools variation 4655718 4655718 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192342.1 samtools variation 4655761 4655761 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192342.1 samtools variation 5251298 5251298 . . . alleles " G A"; frequencies " 0.222222222222222 0.777777777777778"; depth 36 ; unknown ; non-synonymous GL192342.1 samtools variation 5441431 5441431 . . . alleles " C A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192343.1 samtools variation 956757 956757 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192343.1 samtools variation 956787 956787 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192343.1 samtools variation 956791 956791 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192343.1 samtools variation 1263254 1263254 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL192343.1 samtools variation 1291699 1291699 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192343.1 samtools variation 1294024 1294024 . . . alleles " G A"; frequencies " 0.785123966942149 0.214876033057851"; depth 121 ; unknown ; synonymous GL192343.1 samtools variation 1339579 1339579 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192343.1 samtools variation 1343560 1343560 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192343.1 samtools variation 1362770 1362770 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 36 ; known ; N/A GL192343.1 samtools variation 1363752 1363752 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL192343.1 samtools variation 1371291 1371291 . . . alleles " T A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192343.1 samtools variation 1375527 1375527 . . . alleles " A T"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL192343.1 samtools variation 1378163 1378163 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192343.1 samtools variation 1385652 1385652 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192343.1 samtools variation 1387573 1387573 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192343.1 samtools variation 1387778 1387778 . . . alleles " G T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; N/A GL192343.1 samtools variation 1387842 1387842 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192343.1 samtools variation 1391158 1391158 . . . alleles " C T"; frequencies " 0.79253112033195 0.20746887966805"; depth 482 ; unknown ; N/A GL192343.1 samtools variation 1391760 1391760 . . . alleles " T G"; frequencies " 0.713333333333333 0.286666666666667"; depth 150 ; unknown ; N/A GL192343.1 samtools variation 1392584 1392584 . . . alleles " G A"; frequencies " 0.644768856447689 0.355231143552311"; depth 411 ; known ; N/A GL192343.1 samtools variation 1394521 1394521 . . . alleles " G A"; frequencies " 0.798507462686567 0.201492537313433"; depth 134 ; unknown ; N/A GL192343.1 samtools variation 1411002 1411002 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192343.1 samtools variation 1424738 1424738 . . . alleles " A C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192343.1 samtools variation 1433589 1433589 . . . alleles " T C"; frequencies " 0.320158102766798 0.671936758893281"; depth 253 ; known ; synonymous GL192343.1 samtools variation 1435016 1435016 . . . alleles " C T"; frequencies " 0.677272727272727 0.322727272727273"; depth 220 ; known ; synonymous GL192343.1 samtools variation 1435742 1435742 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192343.1 samtools variation 1435969 1435969 . . . alleles " T A"; frequencies " 0.28 0.72"; depth 25 ; known ; N/A GL192343.1 samtools variation 1435980 1435980 . . . alleles " T C"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL192343.1 samtools variation 1436390 1436390 . . . alleles " T G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192343.1 samtools variation 1437301 1437301 . . . alleles " T C"; frequencies " 0.276872964169381 0.723127035830619"; depth 307 ; known ; synonymous GL192343.1 samtools variation 1439761 1439761 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 96 ; known ; N/A GL192343.1 samtools variation 1440274 1440274 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192343.1 samtools variation 1440426 1440426 . . . alleles " T A"; frequencies " 0.267241379310345 0.732758620689655"; depth 116 ; known ; N/A GL192343.1 samtools variation 1440543 1440543 . . . alleles " T G"; frequencies " 0.716049382716049 0.283950617283951"; depth 81 ; known ; N/A GL192343.1 samtools variation 1440905 1440905 . . . alleles " T C"; frequencies " 0.263736263736264 0.736263736263736"; depth 91 ; known ; N/A GL192343.1 samtools variation 1441080 1441080 . . . alleles " T C"; frequencies " 0.340909090909091 0.659090909090909"; depth 44 ; known ; N/A GL192343.1 samtools variation 1441193 1441193 . . . alleles " T G"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; known ; N/A GL192343.1 samtools variation 1441237 1441237 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; unknown ; N/A GL192343.1 samtools variation 1444634 1444634 . . . alleles " A G"; frequencies " 0.620512820512821 0.376923076923077"; depth 390 ; known ; synonymous GL192343.1 samtools variation 1447247 1447247 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192343.1 samtools variation 1447298 1447298 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192343.1 samtools variation 1461005 1461005 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192343.1 samtools variation 1461637 1461637 . . . alleles " T G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192343.1 samtools variation 1485533 1485533 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192343.1 samtools variation 1485614 1485614 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192343.1 samtools variation 1486157 1486157 . . . alleles " G T"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL192343.1 samtools variation 1496613 1496613 . . . alleles " A C"; frequencies " 0.242857142857143 0.757142857142857"; depth 70 ; known ; N/A GL192343.1 samtools variation 1499144 1499144 . . . alleles " G C"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL192343.1 samtools variation 1501864 1501864 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192343.1 samtools variation 1514467 1514467 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192343.1 samtools variation 1515458 1515458 . . . alleles " G A"; frequencies " 0.535836177474403 0.464163822525597"; depth 293 ; unknown ; synonymous GL192343.1 samtools variation 1517741 1517741 . . . alleles " G A"; frequencies " 0.28 0.72"; depth 25 ; unknown ; N/A GL192343.1 samtools variation 1518598 1518598 . . . alleles " A C"; frequencies " 0.68566493955095 0.31433506044905"; depth 579 ; unknown ; N/A GL192343.1 samtools variation 1518618 1518618 . . . alleles " T C"; frequencies " 0.68649885583524 0.31350114416476"; depth 437 ; unknown ; N/A GL192343.1 samtools variation 1518766 1518766 . . . alleles " C T"; frequencies " 0.520408163265306 0.479591836734694"; depth 588 ; unknown ; N/A GL192343.1 samtools variation 1519014 1519014 . . . alleles " A G"; frequencies " 0.576655052264808 0.423344947735192"; depth 574 ; unknown ; N/A GL192343.1 samtools variation 1519472 1519472 . . . alleles " A G"; frequencies " 0.586021505376344 0.413978494623656"; depth 372 ; unknown ; N/A GL192343.1 samtools variation 1519744 1519744 . . . alleles " T A"; frequencies " 0.529661016949153 0.470338983050847"; depth 472 ; unknown ; N/A GL192343.1 samtools variation 1519815 1519815 . . . alleles " A G"; frequencies " 0.502392344497608 0.497607655502392"; depth 418 ; unknown ; N/A GL192343.1 samtools variation 1520056 1520056 . . . alleles " T A"; frequencies " 0.570776255707763 0.429223744292237"; depth 219 ; unknown ; N/A GL192343.1 samtools variation 1520785 1520785 . . . alleles " G A"; frequencies " 0.528391167192429 0.471608832807571"; depth 634 ; unknown ; N/A GL192343.1 samtools variation 1556479 1556479 . . . alleles " G A"; frequencies " 0.669035532994924 0.330964467005076"; depth 985 ; unknown ; N/A GL192343.1 samtools variation 1557561 1557561 . . . alleles " T C"; frequencies " 0.731182795698925 0.268817204301075"; depth 465 ; unknown ; N/A GL192343.1 samtools variation 1557711 1557711 . . . alleles " G T"; frequencies " 0.793594306049822 0.202846975088968"; depth 281 ; unknown ; N/A GL192343.1 samtools variation 1558455 1558455 . . . alleles " A G"; frequencies " 0.647388059701492 0.350746268656716"; depth 536 ; unknown ; N/A GL192343.1 samtools variation 1558744 1558744 . . . alleles " T C"; frequencies " 0.672727272727273 0.327272727272727"; depth 165 ; unknown ; N/A GL192343.1 samtools variation 1558933 1558933 . . . alleles " T A"; frequencies " 0.677824267782427 0.322175732217573"; depth 239 ; unknown ; N/A GL192343.1 samtools variation 1559127 1559127 . . . alleles " C T"; frequencies " 0.712732919254658 0.287267080745342"; depth 644 ; unknown ; N/A GL192343.1 samtools variation 1559328 1559328 . . . alleles " C G"; frequencies " 0.675496688741722 0.324503311258278"; depth 151 ; unknown ; N/A GL192343.1 samtools variation 1559658 1559658 . . . alleles " C G"; frequencies " 0.722222222222222 0.277777777777778"; depth 216 ; unknown ; N/A GL192343.1 samtools variation 1559943 1559943 . . . alleles " A G"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL192343.1 samtools variation 1560098 1560098 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192343.1 samtools variation 1560343 1560343 . . . alleles " G A"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192343.1 samtools variation 1560474 1560474 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192343.1 samtools variation 1565197 1565197 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL192343.1 samtools variation 1565600 1565600 . . . alleles " G A"; frequencies " 0.45 0.55"; depth 40 ; unknown ; N/A GL192343.1 samtools variation 1565726 1565726 . . . alleles " G C"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192343.1 samtools variation 1566810 1566810 . . . alleles " T G"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; unknown ; N/A GL192343.1 samtools variation 1568324 1568324 . . . alleles " T C"; frequencies " 0.730555555555556 0.269444444444444"; depth 360 ; unknown ; synonymous GL192343.1 samtools variation 1568795 1568795 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192343.1 samtools variation 1578035 1578035 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192343.1 samtools variation 1581344 1581344 . . . alleles " T A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL192343.1 samtools variation 1581660 1581660 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL192343.1 samtools variation 1581671 1581671 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192343.1 samtools variation 1582186 1582186 . . . alleles " A G"; frequencies " 0.655296229802513 0.344703770197487"; depth 557 ; known ; synonymous GL192343.1 samtools variation 1584360 1584360 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192343.1 samtools variation 1594962 1594962 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192343.1 samtools variation 1602026 1602026 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192343.1 samtools variation 1606549 1606549 . . . alleles " G A"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; known ; N/A GL192343.1 samtools variation 1611794 1611794 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL192343.1 samtools variation 1613063 1613063 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192343.1 samtools variation 1617222 1617222 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192343.1 samtools variation 1733867 1733867 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192343.1 samtools variation 1733957 1733957 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192343.1 samtools variation 1750279 1750279 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL192343.1 samtools variation 1750397 1750397 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192343.1 samtools variation 1782953 1782953 . . . alleles " G T"; frequencies " 0.292253521126761 0.707746478873239"; depth 284 ; known ; N/A GL192343.1 samtools variation 1784920 1784920 . . . alleles " A C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192343.1 samtools variation 1785763 1785763 . . . alleles " C T"; frequencies " 0.233333333333333 0.766666666666667"; depth 30 ; known ; N/A GL192343.1 samtools variation 1787562 1787562 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL192343.1 samtools variation 1839972 1839972 . . . alleles " T C"; frequencies " 0.49025974025974 0.50974025974026"; depth 308 ; known ; N/A GL192343.1 samtools variation 2544916 2544916 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192343.1 samtools variation 2968785 2968785 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL192343.1 samtools variation 3082812 3082812 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; synonymous GL192343.1 samtools variation 3089970 3089970 . . . alleles " T A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL192343.1 samtools variation 3113334 3113334 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 45 ; unknown ; N/A GL192343.1 samtools variation 3113353 3113353 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 30 ; known ; N/A GL192343.1 samtools variation 3113540 3113540 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192343.1 samtools variation 3115801 3115801 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; known ; synonymous GL192343.1 samtools variation 3127954 3127954 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192343.1 samtools variation 3128528 3128528 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192343.1 samtools variation 3173447 3173447 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192343.1 samtools variation 3832495 3832495 . . . alleles " T C"; frequencies " 0.342342342342342 0.657657657657658"; depth 111 ; unknown ; N/A GL192343.1 samtools variation 3837152 3837152 . . . alleles " A C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192343.1 samtools variation 3842053 3842053 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL192343.1 samtools variation 3860981 3860981 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192343.1 samtools variation 3872698 3872698 . . . alleles " C A"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; N/A GL192343.1 samtools variation 3873335 3873335 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; unknown ; N/A GL192343.1 samtools variation 3874419 3874419 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192343.1 samtools variation 3874420 3874420 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192343.1 samtools variation 3962284 3962284 . . . alleles " T C"; frequencies " 0.683257918552036 0.316742081447964"; depth 221 ; unknown ; synonymous GL192343.1 samtools variation 3966754 3966754 . . . alleles " T C"; frequencies " 0.693290734824281 0.306709265175719"; depth 313 ; unknown ; synonymous GL192343.1 samtools variation 3967196 3967196 . . . alleles " A G"; frequencies " 0.715328467153285 0.284671532846715"; depth 137 ; unknown ; synonymous GL192343.1 samtools variation 3972319 3972319 . . . alleles " A G"; frequencies " 0.705357142857143 0.294642857142857"; depth 224 ; unknown ; synonymous GL192343.1 samtools variation 3980087 3980087 . . . alleles " A G"; frequencies " 0.657534246575342 0.342465753424658"; depth 73 ; unknown ; non-synonymous GL192343.1 samtools variation 3980684 3980684 . . . alleles " A C"; frequencies " 0.416666666666667 0.583333333333333"; depth 60 ; known ; synonymous GL192343.1 samtools variation 3982028 3982028 . . . alleles " G A"; frequencies " 0.477272727272727 0.522727272727273"; depth 88 ; known ; synonymous GL192343.1 samtools variation 4044560 4044560 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL192343.1 samtools variation 4046875 4046875 . . . alleles " G T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192343.1 samtools variation 4147524 4147524 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192343.1 samtools variation 4164897 4164897 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192344.1 samtools variation 916208 916208 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192344.1 samtools variation 916959 916959 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192344.1 samtools variation 1615325 1615325 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192344.1 samtools variation 1756475 1756475 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; known ; N/A GL192344.1 samtools variation 1757811 1757811 . . . alleles " T G"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; known ; N/A GL192344.1 samtools variation 1761145 1761145 . . . alleles " C T"; frequencies " 0.702380952380952 0.297619047619048"; depth 84 ; unknown ; N/A GL192344.1 samtools variation 1776134 1776134 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192344.1 samtools variation 1781576 1781576 . . . alleles " A T"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; known ; N/A GL192344.1 samtools variation 1804678 1804678 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192344.1 samtools variation 1805223 1805223 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192344.1 samtools variation 1805277 1805277 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192344.1 samtools variation 1807393 1807393 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192344.1 samtools variation 1808326 1808326 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192344.1 samtools variation 1808398 1808398 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192344.1 samtools variation 1822544 1822544 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192344.1 samtools variation 1825886 1825886 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192344.1 samtools variation 1826088 1826088 . . . alleles " G T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192344.1 samtools variation 1977156 1977156 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192344.1 samtools variation 2122215 2122215 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192344.1 samtools variation 2189063 2189063 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192344.1 samtools variation 2734698 2734698 . . . alleles " C T"; frequencies " 0.361031518624642 0.638968481375358"; depth 349 ; known ; N/A GL192344.1 samtools variation 2734911 2734911 . . . alleles " G A"; frequencies " 0.510204081632653 0.489795918367347"; depth 49 ; known ; N/A GL192344.1 samtools variation 2785922 2785922 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192344.1 samtools variation 2805537 2805537 . . . alleles " T G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL192344.1 samtools variation 2806677 2806677 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192344.1 samtools variation 2851505 2851505 . . . alleles " C G"; frequencies " 0.690909090909091 0.309090909090909"; depth 55 ; known ; N/A GL192344.1 samtools variation 2854122 2854122 . . . alleles " T A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192344.1 samtools variation 2863669 2863669 . . . alleles " G A"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192344.1 samtools variation 2882784 2882784 . . . alleles " A G"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL192344.1 samtools variation 2912749 2912749 . . . alleles " T C"; frequencies " 0.517857142857143 0.482142857142857"; depth 112 ; unknown ; N/A GL192344.1 samtools variation 2912963 2912963 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 90 ; unknown ; N/A GL192344.1 samtools variation 2913044 2913044 . . . alleles " T A"; frequencies " 0.573863636363636 0.426136363636364"; depth 176 ; unknown ; N/A GL192344.1 samtools variation 2914840 2914840 . . . alleles " G A"; frequencies " 0.551282051282051 0.448717948717949"; depth 78 ; unknown ; non-synonymous GL192344.1 samtools variation 2914852 2914852 . . . alleles " G T"; frequencies " 0.566265060240964 0.433734939759036"; depth 83 ; unknown ; non-synonymous GL192344.1 samtools variation 2917235 2917235 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 77 ; unknown ; non-synonymous GL192344.1 samtools variation 2918111 2918111 . . . alleles " G C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192344.1 samtools variation 2918676 2918676 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192344.1 samtools variation 2919085 2919085 . . . alleles " T C"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; unknown ; N/A GL192344.1 samtools variation 2920711 2920711 . . . alleles " C G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192344.1 samtools variation 2921785 2921785 . . . alleles " C T"; frequencies " 0.527777777777778 0.472222222222222"; depth 108 ; unknown ; non-synonymous GL192344.1 samtools variation 3238809 3238809 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192344.1 samtools variation 3318675 3318675 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192344.1 samtools variation 3318786 3318786 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192344.1 samtools variation 3386623 3386623 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192344.1 samtools variation 3400062 3400062 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; non-synonymous GL192344.1 samtools variation 3403823 3403823 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; synonymous GL192344.1 samtools variation 3403826 3403826 . . . alleles " C G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; non-synonymous GL192344.1 samtools variation 3404273 3404273 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; synonymous GL192344.1 samtools variation 3409805 3409805 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; synonymous GL192344.1 samtools variation 3434638 3434638 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192344.1 samtools variation 3952616 3952616 . . . alleles " A C"; frequencies " 0.477272727272727 0.522727272727273"; depth 352 ; unknown ; N/A GL192344.1 samtools variation 3953332 3953332 . . . alleles " G A"; frequencies " 0.609195402298851 0.390804597701149"; depth 87 ; unknown ; synonymous GL192344.1 samtools variation 3959898 3959898 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192344.1 samtools variation 3984025 3984025 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192344.1 samtools variation 4002670 4002670 . . . alleles " A C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192344.1 samtools variation 4933540 4933540 . . . alleles " T C"; frequencies " 0.321428571428571 0.678571428571429"; depth 112 ; unknown ; synonymous GL192344.1 samtools variation 4977204 4977204 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192344.1 samtools variation 5021959 5021959 . . . alleles " G A"; frequencies " 0.292613636363636 0.707386363636364"; depth 704 ; unknown ; N/A GL192344.1 samtools variation 5063729 5063729 . . . alleles " C T"; frequencies " 0.283333333333333 0.716666666666667"; depth 60 ; unknown ; N/A GL192345.1 samtools variation 7635 7635 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; non-synonymous GL192345.1 samtools variation 15804 15804 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192345.1 samtools variation 22241 22241 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 117 ; unknown ; synonymous GL192345.1 samtools variation 23190 23190 . . . alleles " T A"; frequencies " 0.305555555555556 0.694444444444444"; depth 72 ; unknown ; non-synonymous GL192345.1 samtools variation 28298 28298 . . . alleles " C T"; frequencies " 0.330882352941176 0.669117647058823"; depth 136 ; known ; synonymous GL192345.1 samtools variation 34444 34444 . . . alleles " G A"; frequencies " 0.46 0.54"; depth 50 ; unknown ; synonymous GL192345.1 samtools variation 38504 38504 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL192345.1 samtools variation 38561 38561 . . . alleles " G A"; frequencies " 0.21875 0.78125"; depth 32 ; known ; N/A GL192345.1 samtools variation 49103 49103 . . . alleles " T G"; frequencies " 0.382352941176471 0.617647058823529"; depth 34 ; known ; synonymous GL192345.1 samtools variation 82263 82263 . . . alleles " A T"; frequencies " 0.647887323943662 0.352112676056338"; depth 71 ; unknown ; non-synonymous GL192345.1 samtools variation 103005 103005 . . . alleles " G A"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; non-synonymous GL192345.1 samtools variation 106071 106071 . . . alleles " G C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192345.1 samtools variation 182159 182159 . . . alleles " G C"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL192345.1 samtools variation 353198 353198 . . . alleles " A G"; frequencies " 0.773584905660377 0.226415094339623"; depth 53 ; unknown ; N/A GL192345.1 samtools variation 359711 359711 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192345.1 samtools variation 359760 359760 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192345.1 samtools variation 511710 511710 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 35 ; known ; N/A GL192345.1 samtools variation 512154 512154 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192345.1 samtools variation 597255 597255 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192345.1 samtools variation 639421 639421 . . . alleles " A G"; frequencies " 0.345794392523364 0.654205607476635"; depth 107 ; unknown ; synonymous GL192345.1 samtools variation 639448 639448 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 140 ; unknown ; synonymous GL192345.1 samtools variation 651373 651373 . . . alleles " G A"; frequencies " 0.734177215189873 0.265822784810127"; depth 79 ; unknown ; non-synonymous GL192345.1 samtools variation 955421 955421 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 60 ; unknown ; N/A GL192345.1 samtools variation 1188888 1188888 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192345.1 samtools variation 1484749 1484749 . . . alleles " T A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192345.1 samtools variation 1545715 1545715 . . . alleles " A G"; frequencies " 0.551724137931034 0.448275862068966"; depth 58 ; known ; synonymous GL192345.1 samtools variation 1545733 1545733 . . . alleles " C T"; frequencies " 0.554054054054054 0.445945945945946"; depth 74 ; known ; synonymous GL192345.1 samtools variation 1546084 1546084 . . . alleles " A G"; frequencies " 0.594594594594595 0.405405405405405"; depth 37 ; known ; synonymous GL192345.1 samtools variation 2031704 2031704 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192345.1 samtools variation 2031780 2031780 . . . alleles " C T"; frequencies " 0.51063829787234 0.48936170212766"; depth 47 ; unknown ; N/A GL192345.1 samtools variation 2031781 2031781 . . . alleles " C T"; frequencies " 0.51063829787234 0.48936170212766"; depth 47 ; unknown ; N/A GL192345.1 samtools variation 2031976 2031976 . . . alleles " T C"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL192345.1 samtools variation 2055329 2055329 . . . alleles " T C"; frequencies " 0.476510067114094 0.523489932885906"; depth 149 ; unknown ; synonymous GL192345.1 samtools variation 4346750 4346750 . . . alleles " A G"; frequencies " 0.346278317152104 0.653721682847896"; depth 309 ; known ; non-synonymous GL192345.1 samtools variation 4370400 4370400 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192345.1 samtools variation 4371336 4371336 . . . alleles " C A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192345.1 samtools variation 4374785 4374785 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192345.1 samtools variation 4375780 4375780 . . . alleles " T C"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; known ; N/A GL192345.1 samtools variation 4386059 4386059 . . . alleles " G A"; frequencies " 0.685950413223141 0.31404958677686"; depth 121 ; unknown ; non-synonymous GL192345.1 samtools variation 4387547 4387547 . . . alleles " A G"; frequencies " 0.340909090909091 0.659090909090909"; depth 44 ; known ; non-synonymous GL192345.1 samtools variation 4387819 4387819 . . . alleles " A G"; frequencies " 0.367647058823529 0.632352941176471"; depth 68 ; known ; synonymous GL192345.1 samtools variation 4389555 4389555 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 70 ; known ; N/A GL192345.1 samtools variation 4390320 4390320 . . . alleles " C T"; frequencies " 0.238095238095238 0.761904761904762"; depth 42 ; known ; N/A GL192345.1 samtools variation 4403425 4403425 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 75 ; known ; N/A GL192345.1 samtools variation 4403523 4403523 . . . alleles " A G"; frequencies " 0.53125 0.46875"; depth 32 ; known ; N/A GL192345.1 samtools variation 4418734 4418734 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192345.1 samtools variation 4418990 4418990 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192345.1 samtools variation 4426188 4426188 . . . alleles " T C"; frequencies " 0.661870503597122 0.338129496402878"; depth 278 ; known ; N/A GL192345.1 samtools variation 4426306 4426306 . . . alleles " C T"; frequencies " 0.400970873786408 0.599029126213592"; depth 1030 ; known ; N/A GL192345.1 samtools variation 4426320 4426320 . . . alleles " A G"; frequencies " 0.3734335839599 0.6265664160401"; depth 1197 ; known ; N/A GL192345.1 samtools variation 4426475 4426475 . . . alleles " C G"; frequencies " 0.315904139433551 0.684095860566449"; depth 459 ; known ; N/A GL192345.1 samtools variation 4426801 4426801 . . . alleles " T C"; frequencies " 0.32183908045977 0.67816091954023"; depth 348 ; known ; N/A GL192345.1 samtools variation 4427157 4427157 . . . alleles " C T"; frequencies " 0.698412698412698 0.301587301587302"; depth 63 ; known ; N/A GL192345.1 samtools variation 4427516 4427516 . . . alleles " C T"; frequencies " 0.240740740740741 0.759259259259259"; depth 216 ; known ; N/A GL192345.1 samtools variation 4427526 4427526 . . . alleles " T G"; frequencies " 0.2625 0.7375"; depth 160 ; known ; N/A GL192345.1 samtools variation 4427974 4427974 . . . alleles " C T"; frequencies " 0.316062176165803 0.683937823834197"; depth 193 ; known ; N/A GL192345.1 samtools variation 4428538 4428538 . . . alleles " A C"; frequencies " 0.591194968553459 0.408805031446541"; depth 159 ; known ; N/A GL192345.1 samtools variation 4428588 4428588 . . . alleles " A G"; frequencies " 0.37319587628866 0.62680412371134"; depth 485 ; known ; N/A GL192345.1 samtools variation 4429100 4429100 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 312 ; known ; N/A GL192345.1 samtools variation 4429980 4429980 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192345.1 samtools variation 4430009 4430009 . . . alleles " T C"; frequencies " 0.541666666666667 0.458333333333333"; depth 48 ; known ; N/A GL192345.1 samtools variation 4430305 4430305 . . . alleles " G C"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192345.1 samtools variation 4431389 4431389 . . . alleles " T C"; frequencies " 0.227272727272727 0.772727272727273"; depth 66 ; known ; N/A GL192345.1 samtools variation 4431943 4431943 . . . alleles " T G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL192345.1 samtools variation 4432778 4432778 . . . alleles " A G"; frequencies " 0.339622641509434 0.660377358490566"; depth 106 ; known ; synonymous GL192345.1 samtools variation 4432957 4432957 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192345.1 samtools variation 4434128 4434128 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL192345.1 samtools variation 4434225 4434225 . . . alleles " G T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192345.1 samtools variation 4435305 4435305 . . . alleles " A G"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; known ; N/A GL192345.1 samtools variation 4435733 4435733 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192345.1 samtools variation 4436083 4436083 . . . alleles " G A"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; known ; N/A GL192345.1 samtools variation 4436153 4436153 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; known ; N/A GL192345.1 samtools variation 4436180 4436180 . . . alleles " G T"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; unknown ; N/A GL192345.1 samtools variation 4436249 4436249 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; known ; N/A GL192345.1 samtools variation 4436715 4436715 . . . alleles " G A"; frequencies " 0.340425531914894 0.659574468085106"; depth 47 ; known ; N/A GL192345.1 samtools variation 4466307 4466307 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; known ; N/A GL192345.1 samtools variation 4546209 4546209 . . . alleles " G T"; frequencies " 0.393939393939394 0.606060606060606"; depth 363 ; known ; N/A GL192345.1 samtools variation 4575620 4575620 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192345.1 samtools variation 4577849 4577849 . . . alleles " C T"; frequencies " 0.459459459459459 0.540540540540541"; depth 37 ; known ; N/A GL192345.1 samtools variation 4581827 4581827 . . . alleles " A T"; frequencies " 0.523809523809524 0.428571428571429"; depth 21 ; unknown ; N/A GL192345.1 samtools variation 4617294 4617294 . . . alleles " C G"; frequencies " 0.343283582089552 0.656716417910448"; depth 268 ; known ; non-synonymous GL192345.1 samtools variation 4734052 4734052 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL192346.1 samtools variation 69024 69024 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192346.1 samtools variation 1296876 1296876 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192346.1 samtools variation 1300013 1300013 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; synonymous GL192346.1 samtools variation 1304941 1304941 . . . alleles " T C"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL192346.1 samtools variation 1304944 1304944 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192346.1 samtools variation 1305084 1305084 . . . alleles " C T"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; N/A GL192346.1 samtools variation 1333913 1333913 . . . alleles " G C"; frequencies " 0.546875 0.453125"; depth 192 ; unknown ; N/A GL192346.1 samtools variation 1386167 1386167 . . . alleles " A G"; frequencies " 0.453488372093023 0.546511627906977"; depth 86 ; unknown ; synonymous GL192346.1 samtools variation 1446695 1446695 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192346.1 samtools variation 1496919 1496919 . . . alleles " T C"; frequencies " 0.468030690537084 0.531969309462916"; depth 391 ; unknown ; synonymous GL192346.1 samtools variation 1504640 1504640 . . . alleles " G A"; frequencies " 0.698795180722892 0.301204819277108"; depth 83 ; unknown ; synonymous GL192346.1 samtools variation 1525358 1525358 . . . alleles " C A"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; synonymous GL192346.1 samtools variation 1526118 1526118 . . . alleles " G A"; frequencies " 0.506849315068493 0.493150684931507"; depth 73 ; unknown ; synonymous GL192346.1 samtools variation 1527153 1527153 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192346.1 samtools variation 1529202 1529202 . . . alleles " C G"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; non-synonymous GL192346.1 samtools variation 2051042 2051042 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192346.1 samtools variation 2079438 2079438 . . . alleles " A T"; frequencies " 0.630769230769231 0.369230769230769"; depth 65 ; unknown ; N/A GL192346.1 samtools variation 2308227 2308227 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192346.1 samtools variation 2352695 2352695 . . . alleles " A T"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; unknown ; N/A GL192346.1 samtools variation 2353031 2353031 . . . alleles " G A"; frequencies " 0.492537313432836 0.507462686567164"; depth 67 ; unknown ; N/A GL192346.1 samtools variation 2376015 2376015 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192346.1 samtools variation 2382466 2382466 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; synonymous GL192346.1 samtools variation 2382981 2382981 . . . alleles " A G"; frequencies " 0.355932203389831 0.644067796610169"; depth 59 ; unknown ; non-synonymous GL192346.1 samtools variation 2383164 2383164 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192346.1 samtools variation 2383622 2383622 . . . alleles " C G"; frequencies " 0.644067796610169 0.355932203389831"; depth 59 ; unknown ; N/A GL192346.1 samtools variation 2383906 2383906 . . . alleles " T C"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; N/A GL192346.1 samtools variation 4965841 4965841 . . . alleles " G C"; frequencies " 0.730434782608696 0.269565217391304"; depth 115 ; known ; N/A GL192346.1 samtools variation 5002214 5002214 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL192346.1 samtools variation 5003349 5003349 . . . alleles " G T"; frequencies " 0.712534059945504 0.282924613987284"; depth 2202 ; known ; synonymous GL192346.1 samtools variation 5013211 5013211 . . . alleles " A G"; frequencies " 0.564102564102564 0.435897435897436"; depth 78 ; known ; N/A GL192346.1 samtools variation 5013255 5013255 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; known ; N/A GL192347.1 samtools variation 2696427 2696427 . . . alleles " C T"; frequencies " 0.54639175257732 0.45360824742268"; depth 97 ; unknown ; non-synonymous GL192347.1 samtools variation 2721382 2721382 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192347.1 samtools variation 2721414 2721414 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192347.1 samtools variation 2730948 2730948 . . . alleles " C T"; frequencies " 0.747252747252747 0.252747252747253"; depth 91 ; unknown ; synonymous GL192347.1 samtools variation 2732636 2732636 . . . alleles " G A"; frequencies " 0.730337078651685 0.269662921348315"; depth 89 ; unknown ; N/A GL192347.1 samtools variation 2732914 2732914 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 114 ; unknown ; N/A GL192347.1 samtools variation 2732946 2732946 . . . alleles " G A"; frequencies " 0.795698924731183 0.204301075268817"; depth 93 ; unknown ; N/A GL192347.1 samtools variation 2733592 2733592 . . . alleles " A G"; frequencies " 0.735632183908046 0.264367816091954"; depth 87 ; unknown ; N/A GL192347.1 samtools variation 2733971 2733971 . . . alleles " C G"; frequencies " 0.461538461538462 0.538461538461538"; depth 39 ; unknown ; N/A GL192347.1 samtools variation 3258061 3258061 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL192347.1 samtools variation 3286636 3286636 . . . alleles " G A"; frequencies " 0.614864864864865 0.378378378378378"; depth 148 ; unknown ; N/A GL192347.1 samtools variation 3287385 3287385 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL192347.1 samtools variation 3287470 3287470 . . . alleles " A T"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; known ; N/A GL192347.1 samtools variation 3288593 3288593 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 84 ; known ; N/A GL192347.1 samtools variation 3290642 3290642 . . . alleles " C G"; frequencies " 0.731707317073171 0.268292682926829"; depth 82 ; known ; N/A GL192347.1 samtools variation 3291088 3291088 . . . alleles " T C"; frequencies " 0.364406779661017 0.635593220338983"; depth 118 ; known ; N/A GL192347.1 samtools variation 3292043 3292043 . . . alleles " G A"; frequencies " 0.616438356164384 0.36986301369863"; depth 73 ; known ; N/A GL192347.1 samtools variation 3293582 3293582 . . . alleles " T A"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL192347.1 samtools variation 3297724 3297724 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192347.1 samtools variation 3298854 3298854 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192347.1 samtools variation 3300770 3300770 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192347.1 samtools variation 3300911 3300911 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192347.1 samtools variation 3300929 3300929 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192347.1 samtools variation 3300964 3300964 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192347.1 samtools variation 3301106 3301106 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 25 ; known ; N/A GL192347.1 samtools variation 3302246 3302246 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192347.1 samtools variation 3302312 3302312 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; known ; N/A GL192347.1 samtools variation 3302331 3302331 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192347.1 samtools variation 3366544 3366544 . . . alleles " G A"; frequencies " 0.245 0.755"; depth 200 ; known ; N/A GL192347.1 samtools variation 3383884 3383884 . . . alleles " G A"; frequencies " 0.575757575757576 0.424242424242424"; depth 165 ; known ; synonymous GL192347.1 samtools variation 3388334 3388334 . . . alleles " C T"; frequencies " 0.443636363636364 0.552727272727273"; depth 275 ; known ; synonymous GL192347.1 samtools variation 3388344 3388344 . . . alleles " C G"; frequencies " 0.589473684210526 0.410526315789474"; depth 285 ; known ; non-synonymous GL192347.1 samtools variation 3388981 3388981 . . . alleles " A G"; frequencies " 0.532019704433498 0.467980295566502"; depth 203 ; known ; synonymous GL192347.1 samtools variation 3496072 3496072 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192347.1 samtools variation 3575806 3575806 . . . alleles " C G"; frequencies " 0.208955223880597 0.791044776119403"; depth 67 ; unknown ; synonymous GL192347.1 samtools variation 3578850 3578850 . . . alleles " C T"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL192347.1 samtools variation 3588193 3588193 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; synonymous GL192347.1 samtools variation 3599968 3599968 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192347.1 samtools variation 3609548 3609548 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; synonymous GL192347.1 samtools variation 3610728 3610728 . . . alleles " T C"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; synonymous GL192347.1 samtools variation 3611103 3611103 . . . alleles " G A"; frequencies " 0.776315789473684 0.223684210526316"; depth 76 ; unknown ; synonymous GL192347.1 samtools variation 3618828 3618828 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192347.1 samtools variation 3619613 3619613 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 51 ; known ; N/A GL192347.1 samtools variation 3620006 3620006 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192347.1 samtools variation 3620701 3620701 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192347.1 samtools variation 3622138 3622138 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL192347.1 samtools variation 3622515 3622515 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192347.1 samtools variation 3622619 3622619 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192347.1 samtools variation 3622856 3622856 . . . alleles " G C"; frequencies " 0.79746835443038 0.20253164556962"; depth 79 ; unknown ; N/A GL192347.1 samtools variation 4464996 4464996 . . . alleles " C T"; frequencies " 0.541436464088398 0.458563535911602"; depth 181 ; unknown ; N/A GL192347.1 samtools variation 4465310 4465310 . . . alleles " C T"; frequencies " 0.776173285198556 0.223826714801444"; depth 277 ; unknown ; N/A GL192347.1 samtools variation 4465975 4465975 . . . alleles " A G"; frequencies " 0.590277777777778 0.409722222222222"; depth 144 ; unknown ; N/A GL192347.1 samtools variation 4467285 4467285 . . . alleles " A G"; frequencies " 0.740932642487047 0.259067357512953"; depth 193 ; unknown ; N/A GL192347.1 samtools variation 4467443 4467443 . . . alleles " A G"; frequencies " 0.382716049382716 0.617283950617284"; depth 81 ; unknown ; N/A GL192347.1 samtools variation 4469985 4469985 . . . alleles " A G"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL192347.1 samtools variation 4470306 4470306 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL192347.1 samtools variation 4471827 4471827 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192347.1 samtools variation 4471845 4471845 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192347.1 samtools variation 4473277 4473277 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192347.1 samtools variation 4473317 4473317 . . . alleles " C T"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; known ; N/A GL192347.1 samtools variation 4473978 4473978 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192347.1 samtools variation 4475059 4475059 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192347.1 samtools variation 4480625 4480625 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192347.1 samtools variation 4481174 4481174 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192347.1 samtools variation 4484344 4484344 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192347.1 samtools variation 4493579 4493579 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192347.1 samtools variation 4513546 4513546 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192347.1 samtools variation 4520741 4520741 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192347.1 samtools variation 4524155 4524155 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 48 ; unknown ; N/A GL192347.1 samtools variation 4527615 4527615 . . . alleles " T A"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; known ; N/A GL192347.1 samtools variation 4528350 4528350 . . . alleles " C A"; frequencies " 0.2 0.8"; depth 25 ; known ; N/A GL192347.1 samtools variation 4528428 4528428 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL192347.1 samtools variation 4528517 4528517 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; known ; N/A GL192347.1 samtools variation 4528742 4528742 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192347.1 samtools variation 4529537 4529537 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192347.1 samtools variation 4529713 4529713 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL192347.1 samtools variation 4529779 4529779 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 28 ; known ; N/A GL192347.1 samtools variation 4529795 4529795 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; known ; N/A GL192347.1 samtools variation 4529862 4529862 . . . alleles " T C"; frequencies " 0.542857142857143 0.457142857142857"; depth 70 ; known ; N/A GL192347.1 samtools variation 4529948 4529948 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 45 ; known ; N/A GL192347.1 samtools variation 4530270 4530270 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192347.1 samtools variation 4532859 4532859 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192347.1 samtools variation 4533106 4533106 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL192347.1 samtools variation 4533721 4533721 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192347.1 samtools variation 4537883 4537883 . . . alleles " T C"; frequencies " 0.407643312101911 0.592356687898089"; depth 157 ; known ; N/A GL192347.1 samtools variation 4540640 4540640 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 114 ; unknown ; N/A GL192347.1 samtools variation 4540814 4540814 . . . alleles " G A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192347.1 samtools variation 4540891 4540891 . . . alleles " A G"; frequencies " 0.547169811320755 0.452830188679245"; depth 53 ; unknown ; N/A GL192347.1 samtools variation 4541352 4541352 . . . alleles " C T"; frequencies " 0.716417910447761 0.283582089552239"; depth 67 ; unknown ; N/A GL192347.1 samtools variation 4541602 4541602 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 72 ; unknown ; N/A GL192347.1 samtools variation 4541682 4541682 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 77 ; unknown ; N/A GL192347.1 samtools variation 4541735 4541735 . . . alleles " A G"; frequencies " 0.602941176470588 0.397058823529412"; depth 68 ; unknown ; N/A GL192347.1 samtools variation 4542859 4542859 . . . alleles " T C"; frequencies " 0.74025974025974 0.25974025974026"; depth 77 ; unknown ; N/A GL192347.1 samtools variation 4543861 4543861 . . . alleles " G A"; frequencies " 0.734177215189873 0.265822784810127"; depth 79 ; unknown ; N/A GL192347.1 samtools variation 4545158 4545158 . . . alleles " C T"; frequencies " 0.486111111111111 0.513888888888889"; depth 72 ; known ; N/A GL192347.1 samtools variation 4545169 4545169 . . . alleles " G A"; frequencies " 0.457142857142857 0.542857142857143"; depth 70 ; known ; N/A GL192347.1 samtools variation 4545247 4545247 . . . alleles " G A"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; known ; N/A GL192347.1 samtools variation 4546527 4546527 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 50 ; known ; N/A GL192347.1 samtools variation 4546533 4546533 . . . alleles " A T"; frequencies " 0.520833333333333 0.479166666666667"; depth 48 ; known ; N/A GL192347.1 samtools variation 4547084 4547084 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; N/A GL192347.1 samtools variation 4547249 4547249 . . . alleles " C T"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; unknown ; N/A GL192347.1 samtools variation 4547319 4547319 . . . alleles " G T"; frequencies " 0.609756097560976 0.390243902439024"; depth 41 ; known ; N/A GL192347.1 samtools variation 4547358 4547358 . . . alleles " T A"; frequencies " 0.45 0.55"; depth 40 ; known ; N/A GL192347.1 samtools variation 4552365 4552365 . . . alleles " C T"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL192347.1 samtools variation 4553921 4553921 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192347.1 samtools variation 4554048 4554048 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192347.1 samtools variation 4554264 4554264 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 25 ; known ; N/A GL192347.1 samtools variation 4554291 4554291 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192347.1 samtools variation 4556143 4556143 . . . alleles " C A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192347.1 samtools variation 4559965 4559965 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192347.1 samtools variation 4560977 4560977 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192347.1 samtools variation 4564408 4564408 . . . alleles " T G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192347.1 samtools variation 4752719 4752719 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192347.1 samtools variation 4777082 4777082 . . . alleles " C T"; frequencies " 0.7601246105919 0.2398753894081"; depth 642 ; unknown ; synonymous GL192347.1 samtools variation 4777134 4777134 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192347.1 samtools variation 4777258 4777258 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192347.1 samtools variation 4777859 4777859 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192347.1 samtools variation 4778424 4778424 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192347.1 samtools variation 4779347 4779347 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192347.1 samtools variation 4779882 4779882 . . . alleles " C T"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL192347.1 samtools variation 4781500 4781500 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192347.1 samtools variation 4781948 4781948 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192347.1 samtools variation 4782776 4782776 . . . alleles " C A"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL192347.1 samtools variation 4783013 4783013 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192347.1 samtools variation 4783758 4783758 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192347.1 samtools variation 4784172 4784172 . . . alleles " T C"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192347.1 samtools variation 4784246 4784246 . . . alleles " G A"; frequencies " 0.695121951219512 0.304878048780488"; depth 82 ; unknown ; N/A GL192347.1 samtools variation 4784272 4784272 . . . alleles " G A"; frequencies " 0.682926829268293 0.317073170731707"; depth 82 ; unknown ; N/A GL192347.1 samtools variation 4787284 4787284 . . . alleles " A T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192347.1 samtools variation 4787514 4787514 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192347.1 samtools variation 4788549 4788549 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192347.1 samtools variation 4788606 4788606 . . . alleles " G C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192347.1 samtools variation 4789663 4789663 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192347.1 samtools variation 4790590 4790590 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192347.1 samtools variation 4790722 4790722 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192347.1 samtools variation 4792191 4792191 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192347.1 samtools variation 4794122 4794122 . . . alleles " T C"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192347.1 samtools variation 4794880 4794880 . . . alleles " G C"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; unknown ; N/A GL192347.1 samtools variation 4795423 4795423 . . . alleles " G A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192347.1 samtools variation 4796410 4796410 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192347.1 samtools variation 4796494 4796494 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192347.1 samtools variation 4796771 4796771 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 57 ; unknown ; N/A GL192347.1 samtools variation 4798300 4798300 . . . alleles " C T"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192347.1 samtools variation 4798769 4798769 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 20 ; known ; N/A GL192347.1 samtools variation 4799306 4799306 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192347.1 samtools variation 4799651 4799651 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 56 ; unknown ; N/A GL192347.1 samtools variation 4799841 4799841 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192347.1 samtools variation 4802027 4802027 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192347.1 samtools variation 4802516 4802516 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192347.1 samtools variation 4802591 4802591 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192347.1 samtools variation 4803571 4803571 . . . alleles " G A"; frequencies " 0.512820512820513 0.487179487179487"; depth 39 ; unknown ; N/A GL192347.1 samtools variation 4803704 4803704 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192347.1 samtools variation 4803980 4803980 . . . alleles " G A"; frequencies " 0.793402777777778 0.206597222222222"; depth 576 ; known ; N/A GL192347.1 samtools variation 4804202 4804202 . . . alleles " C T"; frequencies " 0.752665245202559 0.247334754797441"; depth 469 ; unknown ; N/A GL192347.1 samtools variation 4804338 4804338 . . . alleles " G A"; frequencies " 0.747863247863248 0.252136752136752"; depth 702 ; known ; N/A GL192347.1 samtools variation 4804747 4804747 . . . alleles " A G"; frequencies " 0.765060240963855 0.234939759036145"; depth 332 ; known ; N/A GL192347.1 samtools variation 4804798 4804798 . . . alleles " C T"; frequencies " 0.268085106382979 0.731914893617021"; depth 235 ; known ; N/A GL192347.1 samtools variation 4804996 4804996 . . . alleles " C T"; frequencies " 0.788157894736842 0.211842105263158"; depth 760 ; known ; N/A GL192347.1 samtools variation 4806105 4806105 . . . alleles " A G"; frequencies " 0.205188679245283 0.794811320754717"; depth 424 ; known ; N/A GL192347.1 samtools variation 4806892 4806892 . . . alleles " G A"; frequencies " 0.704301075268817 0.295698924731183"; depth 186 ; unknown ; N/A GL192347.1 samtools variation 4950746 4950746 . . . alleles " G T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192348.1 samtools variation 29106 29106 . . . alleles " G A"; frequencies " 0.20917225950783 0.79082774049217"; depth 894 ; known ; N/A GL192348.1 samtools variation 29127 29127 . . . alleles " A G"; frequencies " 0.556372549019608 0.443627450980392"; depth 816 ; known ; N/A GL192348.1 samtools variation 50279 50279 . . . alleles " T C"; frequencies " 0.49906015037594 0.50093984962406"; depth 1064 ; known ; N/A GL192348.1 samtools variation 51185 51185 . . . alleles " G A"; frequencies " 0.778920308483291 0.22107969151671"; depth 389 ; unknown ; N/A GL192348.1 samtools variation 61209 61209 . . . alleles " A G"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL192348.1 samtools variation 61772 61772 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192348.1 samtools variation 81688 81688 . . . alleles " T C"; frequencies " 0.704284221525601 0.295715778474399"; depth 957 ; unknown ; synonymous GL192348.1 samtools variation 83899 83899 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 85847 85847 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 330 ; unknown ; synonymous GL192348.1 samtools variation 86201 86201 . . . alleles " G C"; frequencies " 0.385826771653543 0.614173228346457"; depth 381 ; known ; N/A GL192348.1 samtools variation 86864 86864 . . . alleles " A C"; frequencies " 0.311881188118812 0.688118811881188"; depth 202 ; known ; N/A GL192348.1 samtools variation 86973 86973 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192348.1 samtools variation 96153 96153 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL192348.1 samtools variation 96586 96586 . . . alleles " G A"; frequencies " 0.767123287671233 0.232876712328767"; depth 73 ; unknown ; N/A GL192348.1 samtools variation 97123 97123 . . . alleles " T C"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; N/A GL192348.1 samtools variation 97385 97385 . . . alleles " C T"; frequencies " 0.304347826086957 0.695652173913043"; depth 46 ; unknown ; N/A GL192348.1 samtools variation 97429 97429 . . . alleles " G A"; frequencies " 0.545197740112994 0.454802259887006"; depth 354 ; unknown ; synonymous GL192348.1 samtools variation 97801 97801 . . . alleles " A G"; frequencies " 0.274193548387097 0.725806451612903"; depth 62 ; known ; N/A GL192348.1 samtools variation 115279 115279 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192348.1 samtools variation 118245 118245 . . . alleles " C T"; frequencies " 0.654631083202512 0.343799058084772"; depth 637 ; unknown ; N/A GL192348.1 samtools variation 118622 118622 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL192348.1 samtools variation 121651 121651 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL192348.1 samtools variation 180370 180370 . . . alleles " T G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192348.1 samtools variation 208210 208210 . . . alleles " T C"; frequencies " 0.76978417266187 0.23021582733813"; depth 417 ; known ; N/A GL192348.1 samtools variation 209220 209220 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL192348.1 samtools variation 210594 210594 . . . alleles " A T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192348.1 samtools variation 215022 215022 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192348.1 samtools variation 216272 216272 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 218483 218483 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 218745 218745 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192348.1 samtools variation 220304 220304 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192348.1 samtools variation 223493 223493 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; known ; N/A GL192348.1 samtools variation 245626 245626 . . . alleles " A C"; frequencies " 0.764705882352941 0.235294117647059"; depth 51 ; known ; N/A GL192348.1 samtools variation 245969 245969 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192348.1 samtools variation 245988 245988 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL192348.1 samtools variation 265977 265977 . . . alleles " G A"; frequencies " 0.786516853932584 0.213483146067416"; depth 267 ; unknown ; synonymous GL192348.1 samtools variation 271335 271335 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 293727 293727 . . . alleles " C A"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL192348.1 samtools variation 293795 293795 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 298757 298757 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 337152 337152 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; non-synonymous GL192348.1 samtools variation 341785 341785 . . . alleles " G A"; frequencies " 0.445945945945946 0.554054054054054"; depth 74 ; unknown ; N/A GL192348.1 samtools variation 341904 341904 . . . alleles " G A"; frequencies " 0.479166666666667 0.520833333333333"; depth 48 ; unknown ; N/A GL192348.1 samtools variation 344616 344616 . . . alleles " T G"; frequencies " 0.513888888888889 0.486111111111111"; depth 72 ; unknown ; synonymous GL192348.1 samtools variation 365784 365784 . . . alleles " T C"; frequencies " 0.690058479532164 0.309941520467836"; depth 171 ; unknown ; N/A GL192348.1 samtools variation 490280 490280 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192348.1 samtools variation 494711 494711 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 582518 582518 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192348.1 samtools variation 611700 611700 . . . alleles " A G"; frequencies " 0.529411764705882 0.450980392156863"; depth 51 ; known ; non-synonymous GL192348.1 samtools variation 619258 619258 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 54 ; unknown ; synonymous GL192348.1 samtools variation 726488 726488 . . . alleles " C G"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; unknown ; N/A GL192348.1 samtools variation 726566 726566 . . . alleles " C T"; frequencies " 0.795698924731183 0.204301075268817"; depth 93 ; unknown ; N/A GL192348.1 samtools variation 726645 726645 . . . alleles " G A"; frequencies " 0.767857142857143 0.232142857142857"; depth 112 ; unknown ; N/A GL192348.1 samtools variation 726676 726676 . . . alleles " A G"; frequencies " 0.79136690647482 0.20863309352518"; depth 139 ; unknown ; N/A GL192348.1 samtools variation 726703 726703 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 130 ; unknown ; non-synonymous GL192348.1 samtools variation 728261 728261 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192348.1 samtools variation 729116 729116 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192348.1 samtools variation 729674 729674 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 790644 790644 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192348.1 samtools variation 797037 797037 . . . alleles " G A"; frequencies " 0.724043715846995 0.275956284153005"; depth 366 ; unknown ; synonymous GL192348.1 samtools variation 805616 805616 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192348.1 samtools variation 815541 815541 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192348.1 samtools variation 822730 822730 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 824449 824449 . . . alleles " T C"; frequencies " 0.359959555106168 0.640040444893832"; depth 989 ; unknown ; synonymous GL192348.1 samtools variation 824473 824473 . . . alleles " C G"; frequencies " 0.391468005018821 0.608531994981179"; depth 797 ; unknown ; non-synonymous GL192348.1 samtools variation 824848 824848 . . . alleles " G A"; frequencies " 0.459459459459459 0.540540540540541"; depth 37 ; unknown ; N/A GL192348.1 samtools variation 825671 825671 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192348.1 samtools variation 826321 826321 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 827370 827370 . . . alleles " T C"; frequencies " 0.280632411067194 0.719367588932806"; depth 506 ; unknown ; non-synonymous GL192348.1 samtools variation 827681 827681 . . . alleles " G T"; frequencies " 0.523809523809524 0.476190476190476"; depth 42 ; unknown ; N/A GL192348.1 samtools variation 828752 828752 . . . alleles " T C"; frequencies " 0.33993399339934 0.66006600660066"; depth 606 ; unknown ; synonymous GL192348.1 samtools variation 828830 828830 . . . alleles " T C"; frequencies " 0.378504672897196 0.621495327102804"; depth 428 ; unknown ; synonymous GL192348.1 samtools variation 829019 829019 . . . alleles " G A"; frequencies " 0.38265306122449 0.61734693877551"; depth 588 ; unknown ; N/A GL192348.1 samtools variation 829123 829123 . . . alleles " G T"; frequencies " 0.39185393258427 0.606741573033708"; depth 712 ; unknown ; N/A GL192348.1 samtools variation 829437 829437 . . . alleles " C T"; frequencies " 0.60536398467433 0.390804597701149"; depth 261 ; unknown ; N/A GL192348.1 samtools variation 829755 829755 . . . alleles " G C"; frequencies " 0.61139896373057 0.38860103626943"; depth 772 ; unknown ; N/A GL192348.1 samtools variation 829758 829758 . . . alleles " C T"; frequencies " 0.612738853503185 0.387261146496815"; depth 785 ; unknown ; N/A GL192348.1 samtools variation 833393 833393 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 834157 834157 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 57 ; unknown ; N/A GL192348.1 samtools variation 834728 834728 . . . alleles " A G"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL192348.1 samtools variation 838533 838533 . . . alleles " T C"; frequencies " 0.352402745995423 0.647597254004577"; depth 437 ; unknown ; N/A GL192348.1 samtools variation 881739 881739 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 897428 897428 . . . alleles " A G"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL192348.1 samtools variation 899197 899197 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL192348.1 samtools variation 900637 900637 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; synonymous GL192348.1 samtools variation 902623 902623 . . . alleles " A C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 902761 902761 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 906002 906002 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 919428 919428 . . . alleles " A T"; frequencies " 0.369047619047619 0.630952380952381"; depth 84 ; unknown ; N/A GL192348.1 samtools variation 919496 919496 . . . alleles " A G"; frequencies " 0.305555555555556 0.694444444444444"; depth 72 ; unknown ; N/A GL192348.1 samtools variation 919598 919598 . . . alleles " C T"; frequencies " 0.317460317460317 0.682539682539683"; depth 63 ; unknown ; N/A GL192348.1 samtools variation 919868 919868 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 63 ; unknown ; N/A GL192348.1 samtools variation 919912 919912 . . . alleles " T C"; frequencies " 0.540540540540541 0.459459459459459"; depth 37 ; unknown ; N/A GL192348.1 samtools variation 926527 926527 . . . alleles " G C"; frequencies " 0.48 0.52"; depth 25 ; unknown ; non-synonymous GL192348.1 samtools variation 926819 926819 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 24 ; unknown ; synonymous GL192348.1 samtools variation 926927 926927 . . . alleles " C T"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; synonymous GL192348.1 samtools variation 927290 927290 . . . alleles " A G"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; synonymous GL192348.1 samtools variation 950000 950000 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 952719 952719 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192348.1 samtools variation 953067 953067 . . . alleles " C T"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; unknown ; N/A GL192348.1 samtools variation 953269 953269 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192348.1 samtools variation 953568 953568 . . . alleles " A G"; frequencies " 0.652482269503546 0.347517730496454"; depth 141 ; unknown ; N/A GL192348.1 samtools variation 954348 954348 . . . alleles " G C"; frequencies " 0.718446601941748 0.281553398058252"; depth 206 ; unknown ; N/A GL192348.1 samtools variation 954464 954464 . . . alleles " A C"; frequencies " 0.734939759036145 0.265060240963855"; depth 166 ; unknown ; N/A GL192348.1 samtools variation 954576 954576 . . . alleles " A G"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL192348.1 samtools variation 954914 954914 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 955665 955665 . . . alleles " A G"; frequencies " 0.666666666666667 0.329588014981273"; depth 267 ; unknown ; synonymous GL192348.1 samtools variation 1020131 1020131 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 1064013 1064013 . . . alleles " A T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 1169912 1169912 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; synonymous GL192348.1 samtools variation 1170223 1170223 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; non-synonymous GL192348.1 samtools variation 1212455 1212455 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 1216085 1216085 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 1218845 1218845 . . . alleles " C A"; frequencies " 0.46875 0.53125"; depth 192 ; unknown ; synonymous GL192348.1 samtools variation 1219738 1219738 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 1220667 1220667 . . . alleles " G T"; frequencies " 0.47972972972973 0.52027027027027"; depth 148 ; unknown ; N/A GL192348.1 samtools variation 1238055 1238055 . . . alleles " C A"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL192348.1 samtools variation 1250349 1250349 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 240 ; unknown ; N/A GL192348.1 samtools variation 1257447 1257447 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192348.1 samtools variation 1258745 1258745 . . . alleles " A G"; frequencies " 0.486363636363636 0.513636363636364"; depth 220 ; unknown ; N/A GL192348.1 samtools variation 1262447 1262447 . . . alleles " C T"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL192348.1 samtools variation 1284243 1284243 . . . alleles " T C"; frequencies " 0.370242214532872 0.629757785467128"; depth 289 ; unknown ; N/A GL192348.1 samtools variation 1344301 1344301 . . . alleles " T A"; frequencies " 0.36144578313253 0.63855421686747"; depth 83 ; unknown ; N/A GL192348.1 samtools variation 1385982 1385982 . . . alleles " G A"; frequencies " 0.797546012269939 0.202453987730061"; depth 163 ; unknown ; N/A GL192348.1 samtools variation 1390392 1390392 . . . alleles " A T"; frequencies " 0.785714285714286 0.214285714285714"; depth 126 ; unknown ; N/A GL192348.1 samtools variation 1415053 1415053 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192348.1 samtools variation 1415741 1415741 . . . alleles " T A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 1415955 1415955 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192348.1 samtools variation 1417046 1417046 . . . alleles " C T"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; N/A GL192348.1 samtools variation 1417082 1417082 . . . alleles " T C"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL192348.1 samtools variation 1417643 1417643 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; synonymous GL192348.1 samtools variation 1417703 1417703 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 35 ; unknown ; synonymous GL192348.1 samtools variation 1417841 1417841 . . . alleles " C G"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; synonymous GL192348.1 samtools variation 1422114 1422114 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 30 ; unknown ; non-synonymous GL192348.1 samtools variation 1422155 1422155 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; non-synonymous GL192348.1 samtools variation 1423504 1423504 . . . alleles " T C"; frequencies " 0.641509433962264 0.358490566037736"; depth 53 ; unknown ; non-synonymous GL192348.1 samtools variation 1428124 1428124 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; non-synonymous GL192348.1 samtools variation 1428176 1428176 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; synonymous GL192348.1 samtools variation 1432623 1432623 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; synonymous GL192348.1 samtools variation 1432708 1432708 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 20 ; unknown ; non-synonymous GL192348.1 samtools variation 1434523 1434523 . . . alleles " G C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 1465763 1465763 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; N/A GL192348.1 samtools variation 1466099 1466099 . . . alleles " C T"; frequencies " 0.758064516129032 0.241935483870968"; depth 62 ; unknown ; N/A GL192348.1 samtools variation 1468730 1468730 . . . alleles " T C"; frequencies " 0.327586206896552 0.672413793103448"; depth 58 ; unknown ; N/A GL192348.1 samtools variation 1472405 1472405 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192348.1 samtools variation 1477679 1477679 . . . alleles " C T"; frequencies " 0.443965517241379 0.556034482758621"; depth 464 ; unknown ; synonymous GL192348.1 samtools variation 1478912 1478912 . . . alleles " G A"; frequencies " 0.790540540540541 0.209459459459459"; depth 148 ; unknown ; N/A GL192348.1 samtools variation 1492460 1492460 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 115 ; unknown ; N/A GL192348.1 samtools variation 1492497 1492497 . . . alleles " G A"; frequencies " 0.37037037037037 0.62962962962963"; depth 81 ; unknown ; N/A GL192348.1 samtools variation 1492520 1492520 . . . alleles " A G"; frequencies " 0.701298701298701 0.298701298701299"; depth 77 ; unknown ; N/A GL192348.1 samtools variation 1496689 1496689 . . . alleles " C T"; frequencies " 0.231578947368421 0.768421052631579"; depth 95 ; unknown ; non-synonymous GL192348.1 samtools variation 1498663 1498663 . . . alleles " C T"; frequencies " 0.340883352208381 0.659116647791619"; depth 883 ; unknown ; N/A GL192348.1 samtools variation 1498731 1498731 . . . alleles " C A"; frequencies " 0.607339449541284 0.392660550458716"; depth 1090 ; unknown ; N/A GL192348.1 samtools variation 1510698 1510698 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; non-synonymous GL192348.1 samtools variation 1510742 1510742 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; synonymous GL192348.1 samtools variation 1511574 1511574 . . . alleles " A G"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; unknown ; non-synonymous GL192348.1 samtools variation 1512841 1512841 . . . alleles " G A"; frequencies " 0.381578947368421 0.618421052631579"; depth 76 ; unknown ; synonymous GL192348.1 samtools variation 1513211 1513211 . . . alleles " C T"; frequencies " 0.436893203883495 0.563106796116505"; depth 103 ; unknown ; N/A GL192348.1 samtools variation 1513477 1513477 . . . alleles " C A"; frequencies " 0.375838926174497 0.624161073825503"; depth 149 ; unknown ; N/A GL192348.1 samtools variation 1513492 1513492 . . . alleles " G T"; frequencies " 0.764705882352941 0.225490196078431"; depth 102 ; unknown ; N/A GL192348.1 samtools variation 1514124 1514124 . . . alleles " C T"; frequencies " 0.524752475247525 0.475247524752475"; depth 101 ; unknown ; N/A GL192348.1 samtools variation 1515622 1515622 . . . alleles " T C"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL192348.1 samtools variation 1515776 1515776 . . . alleles " C T"; frequencies " 0.48780487804878 0.51219512195122"; depth 41 ; unknown ; N/A GL192348.1 samtools variation 1515882 1515882 . . . alleles " A C"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192348.1 samtools variation 1516133 1516133 . . . alleles " A C"; frequencies " 0.42 0.58"; depth 50 ; unknown ; synonymous GL192348.1 samtools variation 1524397 1524397 . . . alleles " C T"; frequencies " 0.664543524416136 0.333333333333333"; depth 471 ; unknown ; synonymous GL192348.1 samtools variation 1524655 1524655 . . . alleles " T C"; frequencies " 0.207641196013289 0.792358803986711"; depth 602 ; unknown ; synonymous GL192348.1 samtools variation 1528897 1528897 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 54 ; unknown ; N/A GL192348.1 samtools variation 1550911 1550911 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 1556869 1556869 . . . alleles " A G"; frequencies " 0.325581395348837 0.674418604651163"; depth 43 ; unknown ; non-synonymous GL192348.1 samtools variation 1558225 1558225 . . . alleles " A C"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192348.1 samtools variation 1558652 1558652 . . . alleles " G A"; frequencies " 0.775 0.225"; depth 80 ; unknown ; N/A GL192348.1 samtools variation 1559581 1559581 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 1563177 1563177 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL192348.1 samtools variation 1566299 1566299 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; unknown ; synonymous GL192348.1 samtools variation 1566891 1566891 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; non-synonymous GL192348.1 samtools variation 1635579 1635579 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; unknown ; synonymous GL192348.1 samtools variation 1679617 1679617 . . . alleles " C T"; frequencies " 0.402173913043478 0.58695652173913"; depth 92 ; unknown ; N/A GL192348.1 samtools variation 1681456 1681456 . . . alleles " A G"; frequencies " 0.608465608465608 0.391534391534392"; depth 189 ; unknown ; non-synonymous GL192348.1 samtools variation 1681706 1681706 . . . alleles " A G"; frequencies " 0.6625 0.3375"; depth 80 ; unknown ; synonymous GL192348.1 samtools variation 1681766 1681766 . . . alleles " G A"; frequencies " 0.645161290322581 0.354838709677419"; depth 62 ; unknown ; synonymous GL192348.1 samtools variation 1681976 1681976 . . . alleles " C A"; frequencies " 0.560606060606061 0.439393939393939"; depth 132 ; unknown ; synonymous GL192348.1 samtools variation 1682072 1682072 . . . alleles " A G"; frequencies " 0.496732026143791 0.503267973856209"; depth 153 ; unknown ; synonymous GL192348.1 samtools variation 1704633 1704633 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 1705501 1705501 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 1708180 1708180 . . . alleles " G C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 1708766 1708766 . . . alleles " T C"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192348.1 samtools variation 1709268 1709268 . . . alleles " C T"; frequencies " 0.5 0.428571428571429"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 1709670 1709670 . . . alleles " A G"; frequencies " 0.767716535433071 0.232283464566929"; depth 508 ; unknown ; synonymous GL192348.1 samtools variation 1713554 1713554 . . . alleles " G A"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL192348.1 samtools variation 1713573 1713573 . . . alleles " G A"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192348.1 samtools variation 1714119 1714119 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192348.1 samtools variation 1714187 1714187 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192348.1 samtools variation 1714550 1714550 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192348.1 samtools variation 1715356 1715356 . . . alleles " G A"; frequencies " 0.513157894736842 0.486842105263158"; depth 76 ; unknown ; N/A GL192348.1 samtools variation 1715473 1715473 . . . alleles " G A"; frequencies " 0.679012345679012 0.320987654320988"; depth 81 ; unknown ; N/A GL192348.1 samtools variation 1716526 1716526 . . . alleles " A G"; frequencies " 0.434108527131783 0.565891472868217"; depth 129 ; unknown ; N/A GL192348.1 samtools variation 1720056 1720056 . . . alleles " A C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192348.1 samtools variation 1720325 1720325 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192348.1 samtools variation 1721835 1721835 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 1723520 1723520 . . . alleles " C T"; frequencies " 0.785515320334262 0.214484679665738"; depth 359 ; unknown ; non-synonymous GL192348.1 samtools variation 1723710 1723710 . . . alleles " G T"; frequencies " 0.369230769230769 0.630769230769231"; depth 65 ; unknown ; synonymous GL192348.1 samtools variation 1723711 1723711 . . . alleles " C T"; frequencies " 0.359375 0.640625"; depth 64 ; unknown ; synonymous GL192348.1 samtools variation 1726009 1726009 . . . alleles " A C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 1726381 1726381 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192348.1 samtools variation 1726402 1726402 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192348.1 samtools variation 1726450 1726450 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192348.1 samtools variation 1726581 1726581 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 1729614 1729614 . . . alleles " A G"; frequencies " 0.755555555555556 0.244444444444444"; depth 90 ; unknown ; N/A GL192348.1 samtools variation 1729622 1729622 . . . alleles " A G"; frequencies " 0.726315789473684 0.273684210526316"; depth 95 ; unknown ; N/A GL192348.1 samtools variation 1729718 1729718 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; N/A GL192348.1 samtools variation 1729971 1729971 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 1730168 1730168 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 70 ; unknown ; N/A GL192348.1 samtools variation 1730225 1730225 . . . alleles " C A"; frequencies " 0.797619047619048 0.202380952380952"; depth 84 ; unknown ; N/A GL192348.1 samtools variation 1730750 1730750 . . . alleles " A C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 1731975 1731975 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192348.1 samtools variation 1739177 1739177 . . . alleles " G A"; frequencies " 0.782747603833866 0.217252396166134"; depth 313 ; unknown ; synonymous GL192348.1 samtools variation 1746574 1746574 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 1748529 1748529 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 1751849 1751849 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 1752675 1752675 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192348.1 samtools variation 1756259 1756259 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192348.1 samtools variation 1761526 1761526 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192348.1 samtools variation 1784228 1784228 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192348.1 samtools variation 1785836 1785836 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 1790246 1790246 . . . alleles " A C"; frequencies " 0.357314148681055 0.640287769784173"; depth 417 ; unknown ; non-synonymous GL192348.1 samtools variation 1802466 1802466 . . . alleles " G A"; frequencies " 0.750561797752809 0.249438202247191"; depth 445 ; unknown ; synonymous GL192348.1 samtools variation 1803931 1803931 . . . alleles " C T"; frequencies " 0.780737704918033 0.219262295081967"; depth 488 ; unknown ; non-synonymous GL192348.1 samtools variation 1807654 1807654 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192348.1 samtools variation 1819313 1819313 . . . alleles " C T"; frequencies " 0.730337078651685 0.269662921348315"; depth 267 ; unknown ; synonymous GL192348.1 samtools variation 1819699 1819699 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192348.1 samtools variation 1819812 1819812 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; unknown ; N/A GL192348.1 samtools variation 1820114 1820114 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192348.1 samtools variation 1822458 1822458 . . . alleles " A G"; frequencies " 0.676691729323308 0.323308270676692"; depth 133 ; unknown ; N/A GL192348.1 samtools variation 1823333 1823333 . . . alleles " A G"; frequencies " 0.786802030456853 0.213197969543147"; depth 197 ; unknown ; N/A GL192348.1 samtools variation 1824892 1824892 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192348.1 samtools variation 1825059 1825059 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192348.1 samtools variation 1828968 1828968 . . . alleles " T C"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192348.1 samtools variation 1829123 1829123 . . . alleles " A C"; frequencies " 0.51219512195122 0.48780487804878"; depth 164 ; unknown ; non-synonymous GL192348.1 samtools variation 1829533 1829533 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL192348.1 samtools variation 1830431 1830431 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 1831033 1831033 . . . alleles " G A"; frequencies " 0.662650602409639 0.337349397590361"; depth 83 ; unknown ; N/A GL192348.1 samtools variation 1831261 1831261 . . . alleles " T C"; frequencies " 0.536585365853659 0.463414634146341"; depth 82 ; unknown ; N/A GL192348.1 samtools variation 1831820 1831820 . . . alleles " G A"; frequencies " 0.563636363636364 0.436363636363636"; depth 220 ; unknown ; N/A GL192348.1 samtools variation 2045536 2045536 . . . alleles " T C"; frequencies " 0.693333333333333 0.306666666666667"; depth 225 ; unknown ; synonymous GL192348.1 samtools variation 2077436 2077436 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 2094433 2094433 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 93 ; unknown ; synonymous GL192348.1 samtools variation 2097226 2097226 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192348.1 samtools variation 2099016 2099016 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 2150750 2150750 . . . alleles " A G"; frequencies " 0.611650485436893 0.388349514563107"; depth 103 ; unknown ; N/A GL192348.1 samtools variation 2151379 2151379 . . . alleles " T C"; frequencies " 0.607361963190184 0.392638036809816"; depth 163 ; unknown ; N/A GL192348.1 samtools variation 2151497 2151497 . . . alleles " T C"; frequencies " 0.586666666666667 0.413333333333333"; depth 150 ; unknown ; N/A GL192348.1 samtools variation 2151708 2151708 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 153 ; unknown ; N/A GL192348.1 samtools variation 2151804 2151804 . . . alleles " C T"; frequencies " 0.551724137931034 0.448275862068966"; depth 116 ; unknown ; N/A GL192348.1 samtools variation 2152575 2152575 . . . alleles " A G"; frequencies " 0.48 0.52"; depth 50 ; unknown ; N/A GL192348.1 samtools variation 2152729 2152729 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192348.1 samtools variation 2153654 2153654 . . . alleles " T G"; frequencies " 0.232142857142857 0.767857142857143"; depth 56 ; unknown ; N/A GL192348.1 samtools variation 2153791 2153791 . . . alleles " C G"; frequencies " 0.5625 0.4375"; depth 80 ; unknown ; N/A GL192348.1 samtools variation 2153835 2153835 . . . alleles " T G"; frequencies " 0.590163934426229 0.409836065573771"; depth 61 ; unknown ; N/A GL192348.1 samtools variation 2154663 2154663 . . . alleles " T C"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192348.1 samtools variation 2157591 2157591 . . . alleles " T C"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; non-synonymous GL192348.1 samtools variation 2194266 2194266 . . . alleles " C T"; frequencies " 0.474576271186441 0.525423728813559"; depth 59 ; unknown ; non-synonymous GL192348.1 samtools variation 2197738 2197738 . . . alleles " G A"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; synonymous GL192348.1 samtools variation 2197741 2197741 . . . alleles " C T"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; synonymous GL192348.1 samtools variation 2254080 2254080 . . . alleles " A G"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; unknown ; N/A GL192348.1 samtools variation 2254081 2254081 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 40 ; unknown ; N/A GL192348.1 samtools variation 2279060 2279060 . . . alleles " A G"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL192348.1 samtools variation 2286683 2286683 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 2287786 2287786 . . . alleles " G A"; frequencies " 0.580645161290323 0.419354838709677"; depth 124 ; unknown ; synonymous GL192348.1 samtools variation 2289303 2289303 . . . alleles " G A"; frequencies " 0.462264150943396 0.537735849056604"; depth 106 ; unknown ; synonymous GL192348.1 samtools variation 2345507 2345507 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 2379901 2379901 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 2385672 2385672 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 2388087 2388087 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL192348.1 samtools variation 2391294 2391294 . . . alleles " C T"; frequencies " 0.656716417910448 0.343283582089552"; depth 67 ; unknown ; N/A GL192348.1 samtools variation 2392107 2392107 . . . alleles " G A"; frequencies " 0.76056338028169 0.23943661971831"; depth 71 ; unknown ; N/A GL192348.1 samtools variation 2393771 2393771 . . . alleles " C T"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; N/A GL192348.1 samtools variation 2394454 2394454 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL192348.1 samtools variation 2396701 2396701 . . . alleles " A G"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192348.1 samtools variation 2397597 2397597 . . . alleles " C T"; frequencies " 0.727941176470588 0.272058823529412"; depth 136 ; unknown ; N/A GL192348.1 samtools variation 2397865 2397865 . . . alleles " G A"; frequencies " 0.406091370558376 0.593908629441624"; depth 197 ; unknown ; N/A GL192348.1 samtools variation 2513848 2513848 . . . alleles " T C"; frequencies " 0.51063829787234 0.48936170212766"; depth 47 ; unknown ; N/A GL192348.1 samtools variation 2513869 2513869 . . . alleles " C T"; frequencies " 0.573770491803279 0.426229508196721"; depth 61 ; unknown ; N/A GL192348.1 samtools variation 2529094 2529094 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192348.1 samtools variation 2530113 2530113 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 2537421 2537421 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 2597965 2597965 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192348.1 samtools variation 2601874 2601874 . . . alleles " G A"; frequencies " 0.647727272727273 0.352272727272727"; depth 352 ; unknown ; N/A GL192348.1 samtools variation 2603394 2603394 . . . alleles " C T"; frequencies " 0.677966101694915 0.322033898305085"; depth 59 ; unknown ; N/A GL192348.1 samtools variation 2608153 2608153 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 91 ; unknown ; N/A GL192348.1 samtools variation 2608315 2608315 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192348.1 samtools variation 2613494 2613494 . . . alleles " C T"; frequencies " 0.263157894736842 0.736842105263158"; depth 95 ; unknown ; synonymous GL192348.1 samtools variation 2616398 2616398 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 2621034 2621034 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 195 ; unknown ; synonymous GL192348.1 samtools variation 2764060 2764060 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192348.1 samtools variation 2777835 2777835 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192348.1 samtools variation 2778069 2778069 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL192348.1 samtools variation 2778117 2778117 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192348.1 samtools variation 2778370 2778370 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192348.1 samtools variation 2778759 2778759 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL192348.1 samtools variation 2785720 2785720 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 2786419 2786419 . . . alleles " C T"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL192348.1 samtools variation 2789732 2789732 . . . alleles " G A"; frequencies " 0.669902912621359 0.330097087378641"; depth 103 ; unknown ; synonymous GL192348.1 samtools variation 2843337 2843337 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; synonymous GL192348.1 samtools variation 2857886 2857886 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192348.1 samtools variation 2859358 2859358 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192348.1 samtools variation 2862791 2862791 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL192348.1 samtools variation 2864168 2864168 . . . alleles " C T"; frequencies " 0.524590163934426 0.475409836065574"; depth 61 ; unknown ; synonymous GL192348.1 samtools variation 3295616 3295616 . . . alleles " A C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 3322411 3322411 . . . alleles " C T"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; unknown ; synonymous GL192348.1 samtools variation 3322787 3322787 . . . alleles " T C"; frequencies " 0.204545454545455 0.795454545454545"; depth 44 ; unknown ; synonymous GL192348.1 samtools variation 3385365 3385365 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192348.1 samtools variation 3385890 3385890 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192348.1 samtools variation 3386117 3386117 . . . alleles " T C"; frequencies " 0.372549019607843 0.627450980392157"; depth 153 ; unknown ; N/A GL192348.1 samtools variation 3386752 3386752 . . . alleles " T C"; frequencies " 0.207920792079208 0.792079207920792"; depth 101 ; unknown ; N/A GL192348.1 samtools variation 3387585 3387585 . . . alleles " C T"; frequencies " 0.224489795918367 0.775510204081633"; depth 49 ; unknown ; N/A GL192348.1 samtools variation 3397302 3397302 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 3413341 3413341 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192348.1 samtools variation 3413383 3413383 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192348.1 samtools variation 3415611 3415611 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192348.1 samtools variation 3415800 3415800 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192348.1 samtools variation 3415822 3415822 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192348.1 samtools variation 3415942 3415942 . . . alleles " A C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192348.1 samtools variation 3415996 3415996 . . . alleles " G T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192348.1 samtools variation 3439377 3439377 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 3441215 3441215 . . . alleles " C T"; frequencies " 0.767241379310345 0.232758620689655"; depth 116 ; unknown ; synonymous GL192348.1 samtools variation 3442825 3442825 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192348.1 samtools variation 3443305 3443305 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 3445311 3445311 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 3448228 3448228 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 3449390 3449390 . . . alleles " T C"; frequencies " 0.725490196078431 0.274509803921569"; depth 51 ; unknown ; N/A GL192348.1 samtools variation 3449411 3449411 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 63 ; unknown ; N/A GL192348.1 samtools variation 3449452 3449452 . . . alleles " C T"; frequencies " 0.76271186440678 0.23728813559322"; depth 59 ; unknown ; N/A GL192348.1 samtools variation 3449475 3449475 . . . alleles " A C"; frequencies " 0.76 0.24"; depth 50 ; unknown ; N/A GL192348.1 samtools variation 3450062 3450062 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192348.1 samtools variation 3450105 3450105 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192348.1 samtools variation 3450583 3450583 . . . alleles " G A"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL192348.1 samtools variation 3450991 3450991 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192348.1 samtools variation 3452315 3452315 . . . alleles " T C"; frequencies " 0.606060606060606 0.393939393939394"; depth 99 ; unknown ; N/A GL192348.1 samtools variation 3452797 3452797 . . . alleles " A G"; frequencies " 0.492753623188406 0.507246376811594"; depth 69 ; unknown ; N/A GL192348.1 samtools variation 3453031 3453031 . . . alleles " G T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192348.1 samtools variation 3453145 3453145 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192348.1 samtools variation 3565995 3565995 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 34 ; unknown ; synonymous GL192348.1 samtools variation 3566692 3566692 . . . alleles " A G"; frequencies " 0.679012345679012 0.320987654320988"; depth 81 ; unknown ; N/A GL192348.1 samtools variation 3567029 3567029 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL192348.1 samtools variation 3579748 3579748 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192348.1 samtools variation 3580409 3580409 . . . alleles " T G"; frequencies " 0.697916666666667 0.302083333333333"; depth 96 ; unknown ; N/A GL192348.1 samtools variation 3580504 3580504 . . . alleles " G A"; frequencies " 0.786885245901639 0.213114754098361"; depth 61 ; unknown ; N/A GL192348.1 samtools variation 3581035 3581035 . . . alleles " T C"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; unknown ; N/A GL192348.1 samtools variation 3582623 3582623 . . . alleles " G A"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL192348.1 samtools variation 3585144 3585144 . . . alleles " G A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL192348.1 samtools variation 3586061 3586061 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 3603730 3603730 . . . alleles " A C"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL192348.1 samtools variation 3613523 3613523 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192348.1 samtools variation 3613530 3613530 . . . alleles " T C"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192348.1 samtools variation 3619092 3619092 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192348.1 samtools variation 3626669 3626669 . . . alleles " C T"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; unknown ; synonymous GL192348.1 samtools variation 3659624 3659624 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192348.1 samtools variation 3705816 3705816 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; N/A GL192348.1 samtools variation 3709061 3709061 . . . alleles " C T"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192348.1 samtools variation 3712165 3712165 . . . alleles " C A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 3726098 3726098 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 3733551 3733551 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192348.1 samtools variation 3734751 3734751 . . . alleles " A G"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192348.1 samtools variation 3736563 3736563 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 64 ; unknown ; N/A GL192348.1 samtools variation 3737872 3737872 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL192348.1 samtools variation 3738218 3738218 . . . alleles " T G"; frequencies " 0.224489795918367 0.775510204081633"; depth 49 ; unknown ; N/A GL192348.1 samtools variation 3738270 3738270 . . . alleles " A G"; frequencies " 0.226415094339623 0.773584905660377"; depth 53 ; unknown ; N/A GL192348.1 samtools variation 3745105 3745105 . . . alleles " T C"; frequencies " 0.402676399026764 0.597323600973236"; depth 822 ; unknown ; N/A GL192348.1 samtools variation 3747297 3747297 . . . alleles " T A"; frequencies " 0.720588235294118 0.279411764705882"; depth 68 ; unknown ; N/A GL192348.1 samtools variation 3748080 3748080 . . . alleles " T G"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; unknown ; N/A GL192348.1 samtools variation 3750556 3750556 . . . alleles " T C"; frequencies " 0.768976897689769 0.231023102310231"; depth 303 ; unknown ; N/A GL192348.1 samtools variation 3787345 3787345 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192348.1 samtools variation 3790864 3790864 . . . alleles " T G"; frequencies " 0.448598130841121 0.551401869158878"; depth 107 ; unknown ; N/A GL192348.1 samtools variation 3790932 3790932 . . . alleles " T C"; frequencies " 0.519083969465649 0.480916030534351"; depth 131 ; unknown ; N/A GL192348.1 samtools variation 3863910 3863910 . . . alleles " T C"; frequencies " 0.776119402985075 0.223880597014925"; depth 67 ; unknown ; synonymous GL192348.1 samtools variation 3863925 3863925 . . . alleles " G A"; frequencies " 0.745762711864407 0.254237288135593"; depth 59 ; unknown ; synonymous GL192348.1 samtools variation 3863983 3863983 . . . alleles " T G"; frequencies " 0.727941176470588 0.272058823529412"; depth 136 ; unknown ; non-synonymous GL192348.1 samtools variation 3875898 3875898 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; synonymous GL192348.1 samtools variation 3875901 3875901 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; synonymous GL192348.1 samtools variation 3876391 3876391 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 125 ; unknown ; N/A GL192348.1 samtools variation 3876826 3876826 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 55 ; unknown ; N/A GL192348.1 samtools variation 4283748 4283748 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 4343148 4343148 . . . alleles " T G"; frequencies " 0.314285714285714 0.685714285714286"; depth 140 ; known ; non-synonymous GL192348.1 samtools variation 4345848 4345848 . . . alleles " T C"; frequencies " 0.396396396396396 0.603603603603604"; depth 111 ; known ; non-synonymous GL192348.1 samtools variation 4345957 4345957 . . . alleles " G A"; frequencies " 0.696296296296296 0.303703703703704"; depth 135 ; unknown ; synonymous GL192348.1 samtools variation 4348199 4348199 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 4348785 4348785 . . . alleles " T G"; frequencies " 0.764119601328904 0.235880398671096"; depth 301 ; known ; non-synonymous GL192348.1 samtools variation 4349800 4349800 . . . alleles " C T"; frequencies " 0.727748691099476 0.272251308900524"; depth 191 ; unknown ; synonymous GL192348.1 samtools variation 4352416 4352416 . . . alleles " C T"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; synonymous GL192348.1 samtools variation 4352444 4352444 . . . alleles " G A"; frequencies " 0.595238095238095 0.404761904761905"; depth 42 ; unknown ; non-synonymous GL192348.1 samtools variation 4353654 4353654 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 80 ; unknown ; non-synonymous GL192348.1 samtools variation 4354638 4354638 . . . alleles " A G"; frequencies " 0.260674157303371 0.739325842696629"; depth 445 ; known ; synonymous GL192348.1 samtools variation 4356265 4356265 . . . alleles " G A"; frequencies " 0.275401069518717 0.724598930481283"; depth 374 ; known ; synonymous GL192348.1 samtools variation 4357219 4357219 . . . alleles " G A"; frequencies " 0.709433962264151 0.290566037735849"; depth 530 ; known ; non-synonymous GL192348.1 samtools variation 4357296 4357296 . . . alleles " C T"; frequencies " 0.767395626242545 0.232604373757455"; depth 503 ; known ; synonymous GL192348.1 samtools variation 4357495 4357495 . . . alleles " A C"; frequencies " 0.305084745762712 0.694915254237288"; depth 295 ; unknown ; synonymous GL192348.1 samtools variation 4358289 4358289 . . . alleles " A G"; frequencies " 0.292917166866747 0.707082833133253"; depth 833 ; known ; non-synonymous GL192348.1 samtools variation 4358387 4358387 . . . alleles " G A"; frequencies " 0.746987951807229 0.253012048192771"; depth 664 ; known ; synonymous GL192348.1 samtools variation 4361239 4361239 . . . alleles " G A"; frequencies " 0.725856697819315 0.274143302180685"; depth 642 ; known ; synonymous GL192348.1 samtools variation 4365407 4365407 . . . alleles " C T"; frequencies " 0.76271186440678 0.23728813559322"; depth 118 ; unknown ; N/A GL192348.1 samtools variation 4365856 4365856 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 114 ; unknown ; N/A GL192348.1 samtools variation 4373228 4373228 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192348.1 samtools variation 4432395 4432395 . . . alleles " G A"; frequencies " 0.793548387096774 0.206451612903226"; depth 310 ; unknown ; non-synonymous GL192348.1 samtools variation 4511971 4511971 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 4542987 4542987 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; non-synonymous GL192348.1 samtools variation 4544973 4544973 . . . alleles " T G"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; non-synonymous GL192348.1 samtools variation 4545944 4545944 . . . alleles " A C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192348.1 samtools variation 4546003 4546003 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192348.1 samtools variation 4628588 4628588 . . . alleles " A G"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; N/A GL192348.1 samtools variation 4628657 4628657 . . . alleles " A G"; frequencies " 0.66 0.34"; depth 50 ; unknown ; N/A GL192348.1 samtools variation 4669750 4669750 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 4674075 4674075 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192348.1 samtools variation 4674204 4674204 . . . alleles " G T"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL192348.1 samtools variation 4678722 4678722 . . . alleles " C T"; frequencies " 0.379310344827586 0.620689655172414"; depth 174 ; unknown ; non-synonymous GL192348.1 samtools variation 4678993 4678993 . . . alleles " T C"; frequencies " 0.34 0.66"; depth 100 ; unknown ; synonymous GL192348.1 samtools variation 4679425 4679425 . . . alleles " A G"; frequencies " 0.267241379310345 0.732758620689655"; depth 116 ; unknown ; synonymous GL192348.1 samtools variation 4680185 4680185 . . . alleles " C T"; frequencies " 0.349206349206349 0.650793650793651"; depth 63 ; unknown ; synonymous GL192348.1 samtools variation 4680330 4680330 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 69 ; unknown ; synonymous GL192348.1 samtools variation 4680626 4680626 . . . alleles " C T"; frequencies " 0.738461538461539 0.261538461538462"; depth 65 ; unknown ; synonymous GL192348.1 samtools variation 4680836 4680836 . . . alleles " C T"; frequencies " 0.355670103092784 0.644329896907217"; depth 194 ; unknown ; synonymous GL192348.1 samtools variation 4680926 4680926 . . . alleles " C T"; frequencies " 0.743055555555556 0.256944444444444"; depth 144 ; unknown ; synonymous GL192348.1 samtools variation 4684872 4684872 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 92 ; unknown ; synonymous GL192348.1 samtools variation 4684945 4684945 . . . alleles " C T"; frequencies " 0.778761061946903 0.221238938053097"; depth 113 ; unknown ; synonymous GL192348.1 samtools variation 4685108 4685108 . . . alleles " G A"; frequencies " 0.792079207920792 0.207920792079208"; depth 101 ; unknown ; non-synonymous GL192348.1 samtools variation 4687544 4687544 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192348.1 samtools variation 4689623 4689623 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192348.1 samtools variation 4691054 4691054 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; N/A GL192348.1 samtools variation 4760134 4760134 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; unknown ; N/A GL192348.1 samtools variation 4821572 4821572 . . . alleles " T G"; frequencies " 0.365384615384615 0.634615384615385"; depth 52 ; unknown ; N/A GL192348.1 samtools variation 4833346 4833346 . . . alleles " C T"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; non-synonymous GL192348.1 samtools variation 4837136 4837136 . . . alleles " T G"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL192348.1 samtools variation 4841335 4841335 . . . alleles " T C"; frequencies " 0.337579617834395 0.662420382165605"; depth 157 ; unknown ; N/A GL192348.1 samtools variation 4842035 4842035 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192348.1 samtools variation 4842185 4842185 . . . alleles " C T"; frequencies " 0.327586206896552 0.672413793103448"; depth 58 ; unknown ; N/A GL192348.1 samtools variation 4842208 4842208 . . . alleles " G A"; frequencies " 0.649122807017544 0.350877192982456"; depth 57 ; unknown ; N/A GL192348.1 samtools variation 4842957 4842957 . . . alleles " T C"; frequencies " 0.360655737704918 0.639344262295082"; depth 122 ; unknown ; non-synonymous GL192348.1 samtools variation 4859323 4859323 . . . alleles " C T"; frequencies " 0.635467980295567 0.364532019704433"; depth 203 ; unknown ; synonymous GL192348.1 samtools variation 5066190 5066190 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192348.1 samtools variation 5070391 5070391 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; synonymous GL192348.1 samtools variation 5073679 5073679 . . . alleles " A G"; frequencies " 0.607142857142857 0.392857142857143"; depth 56 ; unknown ; synonymous GL192348.1 samtools variation 5075350 5075350 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 110 ; unknown ; N/A GL192348.1 samtools variation 5075475 5075475 . . . alleles " C T"; frequencies " 0.688405797101449 0.311594202898551"; depth 138 ; unknown ; N/A GL192348.1 samtools variation 5075694 5075694 . . . alleles " C T"; frequencies " 0.736111111111111 0.263888888888889"; depth 72 ; unknown ; N/A GL192348.1 samtools variation 5075987 5075987 . . . alleles " A G"; frequencies " 0.493975903614458 0.506024096385542"; depth 83 ; unknown ; N/A GL192348.1 samtools variation 5084664 5084664 . . . alleles " T A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 5088371 5088371 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 77 ; unknown ; synonymous GL192348.1 samtools variation 5105432 5105432 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192348.1 samtools variation 5107020 5107020 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192348.1 samtools variation 5108346 5108346 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192349.1 samtools variation 380416 380416 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192349.1 samtools variation 394412 394412 . . . alleles " T G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192349.1 samtools variation 399483 399483 . . . alleles " T C"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; known ; synonymous GL192349.1 samtools variation 496036 496036 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL192349.1 samtools variation 510333 510333 . . . alleles " G T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192349.1 samtools variation 511191 511191 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192349.1 samtools variation 511519 511519 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192349.1 samtools variation 511765 511765 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192349.1 samtools variation 514061 514061 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL192349.1 samtools variation 514172 514172 . . . alleles " G A"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL192349.1 samtools variation 521390 521390 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192349.1 samtools variation 572720 572720 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192349.1 samtools variation 650551 650551 . . . alleles " C A"; frequencies " 0.702508960573477 0.297491039426523"; depth 279 ; unknown ; non-synonymous GL192349.1 samtools variation 896534 896534 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192349.1 samtools variation 897285 897285 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 70 ; unknown ; N/A GL192349.1 samtools variation 897675 897675 . . . alleles " A G"; frequencies " 0.660714285714286 0.339285714285714"; depth 112 ; unknown ; N/A GL192349.1 samtools variation 897731 897731 . . . alleles " G C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192349.1 samtools variation 898791 898791 . . . alleles " C G"; frequencies " 0.575 0.425"; depth 40 ; known ; N/A GL192349.1 samtools variation 898795 898795 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192349.1 samtools variation 900768 900768 . . . alleles " G A"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL192349.1 samtools variation 902772 902772 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 198 ; unknown ; N/A GL192349.1 samtools variation 902812 902812 . . . alleles " T C"; frequencies " 0.719512195121951 0.280487804878049"; depth 164 ; unknown ; N/A GL192349.1 samtools variation 905957 905957 . . . alleles " A G"; frequencies " 0.724137931034483 0.275862068965517"; depth 87 ; unknown ; N/A GL192349.1 samtools variation 906255 906255 . . . alleles " T C"; frequencies " 0.707602339181287 0.292397660818713"; depth 171 ; unknown ; N/A GL192349.1 samtools variation 906292 906292 . . . alleles " C G"; frequencies " 0.556910569105691 0.443089430894309"; depth 246 ; unknown ; N/A GL192349.1 samtools variation 908478 908478 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192349.1 samtools variation 909540 909540 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192349.1 samtools variation 935939 935939 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192349.1 samtools variation 937303 937303 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192349.1 samtools variation 969089 969089 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192349.1 samtools variation 977329 977329 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192349.1 samtools variation 984343 984343 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; known ; N/A GL192349.1 samtools variation 1001645 1001645 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192349.1 samtools variation 1001937 1001937 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192349.1 samtools variation 1002294 1002294 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL192349.1 samtools variation 1002488 1002488 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL192349.1 samtools variation 1002597 1002597 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192349.1 samtools variation 1002598 1002598 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192349.1 samtools variation 1004134 1004134 . . . alleles " C T"; frequencies " 0.705627705627706 0.294372294372294"; depth 231 ; known ; synonymous GL192349.1 samtools variation 1022477 1022477 . . . alleles " G C"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL192349.1 samtools variation 1022554 1022554 . . . alleles " A C"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL192349.1 samtools variation 1022584 1022584 . . . alleles " T G"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192349.1 samtools variation 1022661 1022661 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192349.1 samtools variation 1023862 1023862 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192349.1 samtools variation 1027414 1027414 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192349.1 samtools variation 1028730 1028730 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192349.1 samtools variation 1579109 1579109 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192349.1 samtools variation 1818260 1818260 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192349.1 samtools variation 1821083 1821083 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192349.1 samtools variation 1821812 1821812 . . . alleles " A C"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192349.1 samtools variation 1823634 1823634 . . . alleles " T C"; frequencies " 0.521739130434783 0.478260869565217"; depth 46 ; unknown ; N/A GL192349.1 samtools variation 1824559 1824559 . . . alleles " T A"; frequencies " 0.329113924050633 0.670886075949367"; depth 79 ; unknown ; N/A GL192349.1 samtools variation 1824616 1824616 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192349.1 samtools variation 1824940 1824940 . . . alleles " A T"; frequencies " 0.641176470588235 0.358823529411765"; depth 170 ; unknown ; N/A GL192349.1 samtools variation 1825793 1825793 . . . alleles " A G"; frequencies " 0.541970802919708 0.458029197080292"; depth 548 ; unknown ; synonymous GL192349.1 samtools variation 1830587 1830587 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL192349.1 samtools variation 1840425 1840425 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL192349.1 samtools variation 1846720 1846720 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192349.1 samtools variation 1851233 1851233 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192349.1 samtools variation 1867294 1867294 . . . alleles " G C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192349.1 samtools variation 1867301 1867301 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192349.1 samtools variation 1874751 1874751 . . . alleles " A G"; frequencies " 0.481884057971014 0.518115942028985"; depth 276 ; unknown ; synonymous GL192349.1 samtools variation 1878912 1878912 . . . alleles " A C"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL192349.1 samtools variation 1900287 1900287 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192349.1 samtools variation 2057586 2057586 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192349.1 samtools variation 2376378 2376378 . . . alleles " C G"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; non-synonymous GL192349.1 samtools variation 2376431 2376431 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL192349.1 samtools variation 2666604 2666604 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192349.1 samtools variation 2759123 2759123 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192349.1 samtools variation 2759253 2759253 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192349.1 samtools variation 2771375 2771375 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192349.1 samtools variation 2778569 2778569 . . . alleles " T A"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; known ; N/A GL192349.1 samtools variation 2781247 2781247 . . . alleles " G A"; frequencies " 0.526785714285714 0.473214285714286"; depth 896 ; unknown ; N/A GL192349.1 samtools variation 2781266 2781266 . . . alleles " C T"; frequencies " 0.22792937399679 0.77207062600321"; depth 623 ; known ; N/A GL192349.1 samtools variation 2781337 2781337 . . . alleles " G A"; frequencies " 0.584313725490196 0.415686274509804"; depth 510 ; unknown ; N/A GL192349.1 samtools variation 2781671 2781671 . . . alleles " G A"; frequencies " 0.733009708737864 0.266990291262136"; depth 412 ; unknown ; N/A GL192349.1 samtools variation 2782485 2782485 . . . alleles " G C"; frequencies " 0.36547433903577 0.63452566096423"; depth 643 ; unknown ; N/A GL192349.1 samtools variation 2783142 2783142 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192349.1 samtools variation 3026439 3026439 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 90 ; unknown ; N/A GL192349.1 samtools variation 3027683 3027683 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192349.1 samtools variation 3027726 3027726 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192349.1 samtools variation 3028572 3028572 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192349.1 samtools variation 3030341 3030341 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192349.1 samtools variation 3040457 3040457 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192349.1 samtools variation 3042207 3042207 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192349.1 samtools variation 3049053 3049053 . . . alleles " C G"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192349.1 samtools variation 3051108 3051108 . . . alleles " G A"; frequencies " 0.646437994722955 0.353562005277045"; depth 758 ; unknown ; synonymous GL192349.1 samtools variation 3052131 3052131 . . . alleles " A G"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192349.1 samtools variation 3053804 3053804 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192349.1 samtools variation 3060939 3060939 . . . alleles " T C"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; unknown ; N/A GL192349.1 samtools variation 3063210 3063210 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192349.1 samtools variation 3068074 3068074 . . . alleles " A C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192349.1 samtools variation 3069712 3069712 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192349.1 samtools variation 3077681 3077681 . . . alleles " T A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192349.1 samtools variation 3078941 3078941 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192349.1 samtools variation 3092308 3092308 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 36 ; unknown ; N/A GL192349.1 samtools variation 3111645 3111645 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192349.1 samtools variation 3161236 3161236 . . . alleles " C T"; frequencies " 0.76 0.24"; depth 200 ; unknown ; N/A GL192349.1 samtools variation 3163509 3163509 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192349.1 samtools variation 3165669 3165669 . . . alleles " C A"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL192349.1 samtools variation 3169984 3169984 . . . alleles " C A"; frequencies " 0.754385964912281 0.245614035087719"; depth 57 ; unknown ; N/A GL192349.1 samtools variation 3179994 3179994 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192349.1 samtools variation 3181129 3181129 . . . alleles " A G"; frequencies " 0.601476014760148 0.398523985239852"; depth 271 ; unknown ; N/A GL192349.1 samtools variation 3181253 3181253 . . . alleles " T C"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL192349.1 samtools variation 3182999 3182999 . . . alleles " T C"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192349.1 samtools variation 3183860 3183860 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192349.1 samtools variation 3184034 3184034 . . . alleles " A T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192349.1 samtools variation 3185355 3185355 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192349.1 samtools variation 3185995 3185995 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192349.1 samtools variation 3186001 3186001 . . . alleles " A C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192349.1 samtools variation 3187541 3187541 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; unknown ; non-synonymous GL192349.1 samtools variation 3187561 3187561 . . . alleles " T C"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; unknown ; non-synonymous GL192349.1 samtools variation 3189931 3189931 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192349.1 samtools variation 3190971 3190971 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL192349.1 samtools variation 3199621 3199621 . . . alleles " G A"; frequencies " 0.377777777777778 0.622222222222222"; depth 45 ; unknown ; N/A GL192349.1 samtools variation 3199672 3199672 . . . alleles " A G"; frequencies " 0.404255319148936 0.595744680851064"; depth 47 ; unknown ; N/A GL192349.1 samtools variation 4050757 4050757 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192349.1 samtools variation 4099616 4099616 . . . alleles " G A"; frequencies " 0.707317073170732 0.292682926829268"; depth 123 ; unknown ; N/A GL192349.1 samtools variation 4101764 4101764 . . . alleles " T C"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; unknown ; N/A GL192349.1 samtools variation 4101904 4101904 . . . alleles " T G"; frequencies " 0.631578947368421 0.368421052631579"; depth 95 ; unknown ; N/A GL192349.1 samtools variation 4349059 4349059 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; non-synonymous GL192349.1 samtools variation 4353954 4353954 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192350.1 samtools variation 11313 11313 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192350.1 samtools variation 14004 14004 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192350.1 samtools variation 27403 27403 . . . alleles " C A"; frequencies " 0.574074074074074 0.425925925925926"; depth 54 ; unknown ; N/A GL192350.1 samtools variation 28093 28093 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL192350.1 samtools variation 34880 34880 . . . alleles " T C"; frequencies " 0.771028037383178 0.228971962616822"; depth 214 ; unknown ; N/A GL192350.1 samtools variation 35478 35478 . . . alleles " C T"; frequencies " 0.747700394218134 0.252299605781866"; depth 1522 ; unknown ; N/A GL192350.1 samtools variation 37192 37192 . . . alleles " G A"; frequencies " 0.701030927835051 0.298969072164948"; depth 194 ; unknown ; non-synonymous GL192350.1 samtools variation 39443 39443 . . . alleles " A G"; frequencies " 0.60377358490566 0.39622641509434"; depth 53 ; unknown ; N/A GL192350.1 samtools variation 39517 39517 . . . alleles " T C"; frequencies " 0.48936170212766 0.51063829787234"; depth 47 ; unknown ; N/A GL192350.1 samtools variation 40203 40203 . . . alleles " T C"; frequencies " 0.783333333333333 0.216666666666667"; depth 60 ; unknown ; N/A GL192350.1 samtools variation 43600 43600 . . . alleles " T C"; frequencies " 0.45679012345679 0.54320987654321"; depth 81 ; unknown ; N/A GL192350.1 samtools variation 44926 44926 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 70 ; unknown ; N/A GL192350.1 samtools variation 44970 44970 . . . alleles " G A"; frequencies " 0.590909090909091 0.409090909090909"; depth 44 ; unknown ; N/A GL192350.1 samtools variation 66440 66440 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; synonymous GL192350.1 samtools variation 96455 96455 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; synonymous GL192350.1 samtools variation 166577 166577 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 48 ; known ; synonymous GL192350.1 samtools variation 168238 168238 . . . alleles " C T"; frequencies " 0.436046511627907 0.563953488372093"; depth 172 ; known ; synonymous GL192350.1 samtools variation 172251 172251 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 60 ; unknown ; synonymous GL192350.1 samtools variation 192715 192715 . . . alleles " T C"; frequencies " 0.745762711864407 0.254237288135593"; depth 59 ; unknown ; N/A GL192350.1 samtools variation 199992 199992 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192350.1 samtools variation 203674 203674 . . . alleles " T C"; frequencies " 0.67948717948718 0.320512820512821"; depth 78 ; unknown ; synonymous GL192350.1 samtools variation 204029 204029 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 104 ; unknown ; N/A GL192350.1 samtools variation 212759 212759 . . . alleles " C A"; frequencies " 0.730769230769231 0.269230769230769"; depth 104 ; known ; N/A GL192350.1 samtools variation 227672 227672 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192350.1 samtools variation 228323 228323 . . . alleles " T C"; frequencies " 0.406451612903226 0.593548387096774"; depth 155 ; known ; synonymous GL192350.1 samtools variation 228439 228439 . . . alleles " T C"; frequencies " 0.478260869565217 0.521739130434783"; depth 69 ; known ; N/A GL192350.1 samtools variation 235787 235787 . . . alleles " G T"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL192350.1 samtools variation 237847 237847 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; known ; N/A GL192350.1 samtools variation 237936 237936 . . . alleles " T C"; frequencies " 0.28 0.72"; depth 25 ; known ; N/A GL192350.1 samtools variation 239337 239337 . . . alleles " T C"; frequencies " 0.36 0.64"; depth 50 ; known ; non-synonymous GL192350.1 samtools variation 239361 239361 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 42 ; unknown ; non-synonymous GL192350.1 samtools variation 244821 244821 . . . alleles " G C"; frequencies " 0.517647058823529 0.482352941176471"; depth 85 ; known ; N/A GL192350.1 samtools variation 246542 246542 . . . alleles " G A"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; known ; non-synonymous GL192350.1 samtools variation 251799 251799 . . . alleles " T C"; frequencies " 0.348837209302326 0.651162790697674"; depth 86 ; known ; non-synonymous GL192350.1 samtools variation 252586 252586 . . . alleles " T C"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; known ; non-synonymous GL192350.1 samtools variation 259012 259012 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; known ; synonymous GL192350.1 samtools variation 317699 317699 . . . alleles " G A"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; known ; N/A GL192350.1 samtools variation 329247 329247 . . . alleles " C A"; frequencies " 0.770491803278688 0.229508196721311"; depth 61 ; unknown ; synonymous GL192350.1 samtools variation 435149 435149 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192350.1 samtools variation 457349 457349 . . . alleles " G A"; frequencies " 0.738351254480287 0.261648745519713"; depth 279 ; unknown ; synonymous GL192350.1 samtools variation 468127 468127 . . . alleles " C G"; frequencies " 0.458333333333333 0.541666666666667"; depth 48 ; unknown ; N/A GL192350.1 samtools variation 482129 482129 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192350.1 samtools variation 505511 505511 . . . alleles " T C"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; known ; N/A GL192350.1 samtools variation 507309 507309 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192350.1 samtools variation 507310 507310 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192350.1 samtools variation 507442 507442 . . . alleles " C A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192350.1 samtools variation 507526 507526 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 24 ; known ; N/A GL192350.1 samtools variation 507574 507574 . . . alleles " T C"; frequencies " 0.323529411764706 0.676470588235294"; depth 34 ; known ; N/A GL192350.1 samtools variation 507591 507591 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 40 ; known ; N/A GL192350.1 samtools variation 553298 553298 . . . alleles " T C"; frequencies " 0.2125 0.7875"; depth 80 ; known ; N/A GL192350.1 samtools variation 553868 553868 . . . alleles " G T"; frequencies " 0.464912280701754 0.535087719298246"; depth 114 ; known ; N/A GL192350.1 samtools variation 554544 554544 . . . alleles " T C"; frequencies " 0.56 0.44"; depth 125 ; known ; N/A GL192350.1 samtools variation 554800 554800 . . . alleles " A G"; frequencies " 0.441379310344828 0.558620689655172"; depth 145 ; known ; N/A GL192350.1 samtools variation 554970 554970 . . . alleles " T G"; frequencies " 0.638095238095238 0.352380952380952"; depth 105 ; unknown ; N/A GL192350.1 samtools variation 562070 562070 . . . alleles " A G"; frequencies " 0.686390532544379 0.313609467455621"; depth 338 ; unknown ; N/A GL192350.1 samtools variation 563338 563338 . . . alleles " G A"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; known ; N/A GL192350.1 samtools variation 582725 582725 . . . alleles " G A"; frequencies " 0.706896551724138 0.293103448275862"; depth 58 ; unknown ; non-synonymous GL192350.1 samtools variation 1249901 1249901 . . . alleles " C T"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; N/A GL192350.1 samtools variation 1250042 1250042 . . . alleles " G A"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL192350.1 samtools variation 1312545 1312545 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192350.1 samtools variation 1316122 1316122 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192350.1 samtools variation 1320610 1320610 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192350.1 samtools variation 1326045 1326045 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192350.1 samtools variation 1337822 1337822 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192350.1 samtools variation 1339901 1339901 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192350.1 samtools variation 1431398 1431398 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; known ; synonymous GL192350.1 samtools variation 1531503 1531503 . . . alleles " A C"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL192350.1 samtools variation 1532288 1532288 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192350.1 samtools variation 1698676 1698676 . . . alleles " A C"; frequencies " 0.769230769230769 0.230769230769231"; depth 91 ; unknown ; N/A GL192350.1 samtools variation 1698683 1698683 . . . alleles " T A"; frequencies " 0.793103448275862 0.206896551724138"; depth 87 ; unknown ; N/A GL192350.1 samtools variation 1700881 1700881 . . . alleles " A G"; frequencies " 0.340659340659341 0.659340659340659"; depth 91 ; known ; N/A GL192350.1 samtools variation 1776321 1776321 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192350.1 samtools variation 1804301 1804301 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 49 ; unknown ; N/A GL192350.1 samtools variation 1878539 1878539 . . . alleles " A G"; frequencies " 0.64 0.346666666666667"; depth 75 ; unknown ; synonymous GL192350.1 samtools variation 2694787 2694787 . . . alleles " G A"; frequencies " 0.790804597701149 0.209195402298851"; depth 435 ; unknown ; N/A GL192350.1 samtools variation 2847657 2847657 . . . alleles " C A"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL192350.1 samtools variation 2862149 2862149 . . . alleles " C T"; frequencies " 0.795454545454545 0.204545454545455"; depth 220 ; known ; N/A GL192350.1 samtools variation 2862445 2862445 . . . alleles " A C"; frequencies " 0.629251700680272 0.370748299319728"; depth 294 ; unknown ; N/A GL192350.1 samtools variation 2863091 2863091 . . . alleles " T C"; frequencies " 0.702031602708804 0.297968397291196"; depth 443 ; unknown ; N/A GL192350.1 samtools variation 2866057 2866057 . . . alleles " G C"; frequencies " 0.622222222222222 0.355555555555556"; depth 45 ; unknown ; N/A GL192350.1 samtools variation 2897103 2897103 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192350.1 samtools variation 2904059 2904059 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192350.1 samtools variation 3046464 3046464 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192350.1 samtools variation 3191700 3191700 . . . alleles " C A"; frequencies " 0.591715976331361 0.408284023668639"; depth 169 ; unknown ; N/A GL192350.1 samtools variation 3210420 3210420 . . . alleles " A G"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192350.1 samtools variation 3210763 3210763 . . . alleles " G C"; frequencies " 0.664383561643836 0.335616438356164"; depth 146 ; unknown ; N/A GL192350.1 samtools variation 3219979 3219979 . . . alleles " C A"; frequencies " 0.350746268656716 0.649253731343284"; depth 134 ; unknown ; synonymous GL192350.1 samtools variation 3246694 3246694 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 69 ; known ; synonymous GL192350.1 samtools variation 3267795 3267795 . . . alleles " A G"; frequencies " 0.630434782608696 0.369565217391304"; depth 92 ; unknown ; synonymous GL192350.1 samtools variation 3268063 3268063 . . . alleles " A G"; frequencies " 0.594594594594595 0.405405405405405"; depth 111 ; known ; non-synonymous GL192350.1 samtools variation 3315916 3315916 . . . alleles " C T"; frequencies " 0.68 0.32"; depth 125 ; unknown ; synonymous GL192350.1 samtools variation 3411451 3411451 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL192350.1 samtools variation 3442004 3442004 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192350.1 samtools variation 3448038 3448038 . . . alleles " T C"; frequencies " 0.460227272727273 0.539772727272727"; depth 176 ; known ; synonymous GL192350.1 samtools variation 3851007 3851007 . . . alleles " G A"; frequencies " 0.691056910569106 0.308943089430894"; depth 123 ; unknown ; N/A GL192350.1 samtools variation 3863616 3863616 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192350.1 samtools variation 3864801 3864801 . . . alleles " A C"; frequencies " 0.375 0.5625"; depth 16 ; known ; N/A GL192350.1 samtools variation 3869104 3869104 . . . alleles " C T"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; unknown ; N/A GL192350.1 samtools variation 3869394 3869394 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; unknown ; N/A GL192350.1 samtools variation 3870572 3870572 . . . alleles " T G"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; unknown ; N/A GL192350.1 samtools variation 3871249 3871249 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192350.1 samtools variation 3874777 3874777 . . . alleles " C T"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192350.1 samtools variation 4284784 4284784 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192350.1 samtools variation 4451410 4451410 . . . alleles " A G"; frequencies " 0.504504504504504 0.495495495495495"; depth 222 ; known ; N/A GL192350.1 samtools variation 4551651 4551651 . . . alleles " G T"; frequencies " 0.782608695652174 0.217391304347826"; depth 92 ; unknown ; synonymous GL192350.1 samtools variation 4553460 4553460 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 88 ; unknown ; synonymous GL192350.1 samtools variation 4553541 4553541 . . . alleles " T C"; frequencies " 0.768115942028985 0.231884057971014"; depth 69 ; unknown ; synonymous GL192350.1 samtools variation 4556304 4556304 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 49 ; unknown ; N/A GL192350.1 samtools variation 4556321 4556321 . . . alleles " T A"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; unknown ; N/A GL192350.1 samtools variation 4557204 4557204 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; unknown ; N/A GL192350.1 samtools variation 4557865 4557865 . . . alleles " T C"; frequencies " 0.72 0.28"; depth 50 ; unknown ; N/A GL192350.1 samtools variation 4558787 4558787 . . . alleles " G T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192350.1 samtools variation 4558946 4558946 . . . alleles " G A"; frequencies " 0.747899159663866 0.252100840336134"; depth 119 ; unknown ; N/A GL192350.1 samtools variation 4559316 4559316 . . . alleles " G A"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192350.1 samtools variation 4559483 4559483 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192351.1 samtools variation 508932 508932 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; known ; N/A GL192351.1 samtools variation 508993 508993 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192351.1 samtools variation 508994 508994 . . . alleles " T G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192351.1 samtools variation 509441 509441 . . . alleles " A G"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; synonymous GL192351.1 samtools variation 776770 776770 . . . alleles " G T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192351.1 samtools variation 792695 792695 . . . alleles " C T"; frequencies " 0.792035398230089 0.207964601769911"; depth 226 ; unknown ; non-synonymous GL192351.1 samtools variation 800646 800646 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192351.1 samtools variation 803097 803097 . . . alleles " T A"; frequencies " 0.740458015267176 0.259541984732824"; depth 131 ; unknown ; N/A GL192351.1 samtools variation 804300 804300 . . . alleles " A G"; frequencies " 0.794805194805195 0.205194805194805"; depth 385 ; unknown ; N/A GL192351.1 samtools variation 1053602 1053602 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; non-synonymous GL192351.1 samtools variation 1054254 1054254 . . . alleles " A C"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; synonymous GL192351.1 samtools variation 1219181 1219181 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192351.1 samtools variation 1233502 1233502 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192351.1 samtools variation 1271733 1271733 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192351.1 samtools variation 1960653 1960653 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; synonymous GL192351.1 samtools variation 2507777 2507777 . . . alleles " C T"; frequencies " 0.515625 0.484375"; depth 64 ; known ; synonymous GL192351.1 samtools variation 2577872 2577872 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 70 ; known ; synonymous GL192351.1 samtools variation 2578764 2578764 . . . alleles " C T"; frequencies " 0.585365853658537 0.414634146341463"; depth 82 ; unknown ; N/A GL192351.1 samtools variation 2578836 2578836 . . . alleles " T A"; frequencies " 0.567375886524823 0.432624113475177"; depth 141 ; unknown ; N/A GL192351.1 samtools variation 2579059 2579059 . . . alleles " C G"; frequencies " 0.468354430379747 0.531645569620253"; depth 79 ; unknown ; N/A GL192351.1 samtools variation 2579108 2579108 . . . alleles " C G"; frequencies " 0.635135135135135 0.364864864864865"; depth 74 ; unknown ; N/A GL192351.1 samtools variation 2579139 2579139 . . . alleles " C T"; frequencies " 0.602564102564103 0.397435897435897"; depth 78 ; unknown ; N/A GL192351.1 samtools variation 2579218 2579218 . . . alleles " C A"; frequencies " 0.566666666666667 0.433333333333333"; depth 60 ; unknown ; N/A GL192351.1 samtools variation 2579292 2579292 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 56 ; unknown ; N/A GL192351.1 samtools variation 2579705 2579705 . . . alleles " T G"; frequencies " 0.583333333333333 0.416666666666667"; depth 72 ; unknown ; N/A GL192351.1 samtools variation 2580485 2580485 . . . alleles " C G"; frequencies " 0.756521739130435 0.243478260869565"; depth 115 ; unknown ; N/A GL192351.1 samtools variation 2580489 2580489 . . . alleles " T C"; frequencies " 0.743589743589744 0.256410256410256"; depth 117 ; unknown ; N/A GL192351.1 samtools variation 2580792 2580792 . . . alleles " A C"; frequencies " 0.462365591397849 0.537634408602151"; depth 93 ; unknown ; N/A GL192351.1 samtools variation 2580793 2580793 . . . alleles " A C"; frequencies " 0.444444444444444 0.555555555555556"; depth 90 ; unknown ; N/A GL192351.1 samtools variation 2580908 2580908 . . . alleles " C T"; frequencies " 0.395348837209302 0.604651162790698"; depth 86 ; unknown ; N/A GL192351.1 samtools variation 2580925 2580925 . . . alleles " G A"; frequencies " 0.590361445783133 0.409638554216867"; depth 83 ; unknown ; N/A GL192351.1 samtools variation 2581147 2581147 . . . alleles " T C"; frequencies " 0.783505154639175 0.206185567010309"; depth 97 ; unknown ; N/A GL192351.1 samtools variation 2581436 2581436 . . . alleles " A C"; frequencies " 0.542372881355932 0.457627118644068"; depth 59 ; unknown ; N/A GL192351.1 samtools variation 2901793 2901793 . . . alleles " C G"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; unknown ; synonymous GL192351.1 samtools variation 2902210 2902210 . . . alleles " C A"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; synonymous GL192351.1 samtools variation 2912986 2912986 . . . alleles " A G"; frequencies " 0.414634146341463 0.585365853658537"; depth 246 ; unknown ; synonymous GL192351.1 samtools variation 2922049 2922049 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192351.1 samtools variation 2933429 2933429 . . . alleles " G C"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; unknown ; N/A GL192351.1 samtools variation 2953418 2953418 . . . alleles " C T"; frequencies " 0.339130434782609 0.660869565217391"; depth 115 ; unknown ; synonymous GL192351.1 samtools variation 2992870 2992870 . . . alleles " G T"; frequencies " 0.565217391304348 0.434782608695652"; depth 161 ; unknown ; non-synonymous GL192351.1 samtools variation 3142120 3142120 . . . alleles " G T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; known ; synonymous GL192351.1 samtools variation 3145806 3145806 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; non-synonymous GL192351.1 samtools variation 3157354 3157354 . . . alleles " C T"; frequencies " 0.488095238095238 0.511904761904762"; depth 168 ; unknown ; N/A GL192351.1 samtools variation 3380073 3380073 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192351.1 samtools variation 3453864 3453864 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192351.1 samtools variation 3487709 3487709 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192351.1 samtools variation 3537849 3537849 . . . alleles " G T"; frequencies " 0.436974789915966 0.563025210084034"; depth 119 ; known ; N/A GL192351.1 samtools variation 3558306 3558306 . . . alleles " G T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192351.1 samtools variation 3575671 3575671 . . . alleles " C T"; frequencies " 0.603305785123967 0.396694214876033"; depth 121 ; unknown ; N/A GL192351.1 samtools variation 3576091 3576091 . . . alleles " T C"; frequencies " 0.372549019607843 0.627450980392157"; depth 255 ; unknown ; N/A GL192351.1 samtools variation 3576303 3576303 . . . alleles " C T"; frequencies " 0.544564152791381 0.455435847208619"; depth 1021 ; unknown ; N/A GL192351.1 samtools variation 3699171 3699171 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192351.1 samtools variation 3711720 3711720 . . . alleles " G A"; frequencies " 0.418604651162791 0.581395348837209"; depth 43 ; unknown ; N/A GL192351.1 samtools variation 3713326 3713326 . . . alleles " T C"; frequencies " 0.355555555555556 0.644444444444444"; depth 45 ; known ; N/A GL192351.1 samtools variation 3713470 3713470 . . . alleles " G A"; frequencies " 0.494117647058824 0.505882352941176"; depth 85 ; unknown ; N/A GL192351.1 samtools variation 3720830 3720830 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; known ; N/A GL192351.1 samtools variation 3847833 3847833 . . . alleles " A G"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; unknown ; N/A GL192351.1 samtools variation 3848101 3848101 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192351.1 samtools variation 3859971 3859971 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192351.1 samtools variation 3859987 3859987 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192351.1 samtools variation 3862015 3862015 . . . alleles " C T"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL192351.1 samtools variation 3879370 3879370 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192351.1 samtools variation 3881077 3881077 . . . alleles " T C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192351.1 samtools variation 3887616 3887616 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; unknown ; N/A GL192351.1 samtools variation 3903804 3903804 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 35 ; unknown ; N/A GL192351.1 samtools variation 3904716 3904716 . . . alleles " G A"; frequencies " 0.71875 0.28125"; depth 64 ; unknown ; N/A GL192351.1 samtools variation 3915426 3915426 . . . alleles " C T"; frequencies " 0.751748251748252 0.248251748251748"; depth 286 ; known ; N/A GL192351.1 samtools variation 3916172 3916172 . . . alleles " A C"; frequencies " 0.325 0.675"; depth 40 ; unknown ; N/A GL192351.1 samtools variation 3917595 3917595 . . . alleles " G A"; frequencies " 0.766773162939297 0.233226837060703"; depth 313 ; unknown ; N/A GL192351.1 samtools variation 3919401 3919401 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192351.1 samtools variation 4166623 4166623 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192351.1 samtools variation 4198786 4198786 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 280 ; unknown ; synonymous GL192351.1 samtools variation 4200352 4200352 . . . alleles " G A"; frequencies " 0.524390243902439 0.475609756097561"; depth 164 ; unknown ; synonymous GL192351.1 samtools variation 4200691 4200691 . . . alleles " C T"; frequencies " 0.645669291338583 0.354330708661417"; depth 127 ; unknown ; synonymous GL192351.1 samtools variation 4201845 4201845 . . . alleles " T C"; frequencies " 0.367003367003367 0.632996632996633"; depth 297 ; unknown ; N/A GL192351.1 samtools variation 4202098 4202098 . . . alleles " A G"; frequencies " 0.464912280701754 0.535087719298246"; depth 114 ; unknown ; N/A GL192351.1 samtools variation 4308322 4308322 . . . alleles " C T"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL192351.1 samtools variation 4314801 4314801 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192351.1 samtools variation 4318540 4318540 . . . alleles " A G"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; unknown ; N/A GL192351.1 samtools variation 4360980 4360980 . . . alleles " C A"; frequencies " 0.462686567164179 0.537313432835821"; depth 67 ; unknown ; N/A GL192351.1 samtools variation 4370219 4370219 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 38 ; unknown ; N/A GL192351.1 samtools variation 4370401 4370401 . . . alleles " G A"; frequencies " 0.46875 0.53125"; depth 128 ; unknown ; N/A GL192351.1 samtools variation 4370616 4370616 . . . alleles " T G"; frequencies " 0.720930232558139 0.27906976744186"; depth 43 ; unknown ; N/A GL192351.1 samtools variation 4371149 4371149 . . . alleles " G T"; frequencies " 0.673469387755102 0.326530612244898"; depth 49 ; unknown ; N/A GL192351.1 samtools variation 4439107 4439107 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; unknown ; synonymous GL192351.1 samtools variation 4526551 4526551 . . . alleles " C A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192351.1 samtools variation 4529110 4529110 . . . alleles " G T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192351.1 samtools variation 4530803 4530803 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192351.1 samtools variation 4530812 4530812 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192351.1 samtools variation 4531682 4531682 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192351.1 samtools variation 4539860 4539860 . . . alleles " A G"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL192351.1 samtools variation 4555623 4555623 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192351.1 samtools variation 4564888 4564888 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192351.1 samtools variation 4623566 4623566 . . . alleles " T C"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192351.1 samtools variation 4623567 4623567 . . . alleles " T C"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192351.1 samtools variation 4623777 4623777 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192351.1 samtools variation 4623792 4623792 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192351.1 samtools variation 4624082 4624082 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192351.1 samtools variation 4628998 4628998 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192351.1 samtools variation 4629478 4629478 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; known ; N/A GL192351.1 samtools variation 4629986 4629986 . . . alleles " T A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192351.1 samtools variation 4629989 4629989 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192351.1 samtools variation 4630034 4630034 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL192351.1 samtools variation 4631570 4631570 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192351.1 samtools variation 4636477 4636477 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192351.1 samtools variation 4636483 4636483 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192351.1 samtools variation 4641115 4641115 . . . alleles " C T"; frequencies " 0.753787878787879 0.242424242424242"; depth 528 ; unknown ; synonymous GL192351.1 samtools variation 4642295 4642295 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL192351.1 samtools variation 4644649 4644649 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL192351.1 samtools variation 4645245 4645245 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL192351.1 samtools variation 4645848 4645848 . . . alleles " A G"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192351.1 samtools variation 4648199 4648199 . . . alleles " G C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192351.1 samtools variation 4648202 4648202 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192351.1 samtools variation 4648246 4648246 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192351.1 samtools variation 4650427 4650427 . . . alleles " T C"; frequencies " 0.473981900452489 0.526018099547511"; depth 884 ; known ; synonymous GL192351.1 samtools variation 4651533 4651533 . . . alleles " T C"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; known ; N/A GL192351.1 samtools variation 4651982 4651982 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; known ; N/A GL192351.1 samtools variation 4652041 4652041 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; known ; N/A GL192351.1 samtools variation 4652142 4652142 . . . alleles " A G"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; known ; N/A GL192351.1 samtools variation 4652653 4652653 . . . alleles " C T"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; known ; N/A GL192351.1 samtools variation 4663790 4663790 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192351.1 samtools variation 4664026 4664026 . . . alleles " T G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL192351.1 samtools variation 4664939 4664939 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL192351.1 samtools variation 4665379 4665379 . . . alleles " T C"; frequencies " 0.508064516129032 0.491935483870968"; depth 248 ; known ; synonymous GL192351.1 samtools variation 4668232 4668232 . . . alleles " T C"; frequencies " 0.55984555984556 0.44015444015444"; depth 259 ; known ; synonymous GL192351.1 samtools variation 4677526 4677526 . . . alleles " C T"; frequencies " 0.786407766990291 0.213592233009709"; depth 103 ; unknown ; N/A GL192351.1 samtools variation 4696239 4696239 . . . alleles " C G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192351.1 samtools variation 4697701 4697701 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192351.1 samtools variation 4697702 4697702 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192352.1 samtools variation 242671 242671 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192352.1 samtools variation 705773 705773 . . . alleles " C T"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192352.1 samtools variation 1493586 1493586 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 50 ; unknown ; synonymous GL192352.1 samtools variation 1504120 1504120 . . . alleles " A G"; frequencies " 0.653198653198653 0.346801346801347"; depth 297 ; unknown ; non-synonymous GL192352.1 samtools variation 1535212 1535212 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192352.1 samtools variation 1546427 1546427 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192352.1 samtools variation 1548296 1548296 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192352.1 samtools variation 1557112 1557112 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 105 ; unknown ; N/A GL192352.1 samtools variation 1557113 1557113 . . . alleles " G A"; frequencies " 0.594339622641509 0.405660377358491"; depth 106 ; unknown ; N/A GL192352.1 samtools variation 1586734 1586734 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192352.1 samtools variation 1610775 1610775 . . . alleles " C A"; frequencies " 0.504 0.496"; depth 125 ; unknown ; non-synonymous GL192352.1 samtools variation 1618518 1618518 . . . alleles " C A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192352.1 samtools variation 2438554 2438554 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; synonymous GL192352.1 samtools variation 2579676 2579676 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192352.1 samtools variation 3902995 3902995 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192352.1 samtools variation 4114195 4114195 . . . alleles " T C"; frequencies " 0.663157894736842 0.336842105263158"; depth 95 ; unknown ; synonymous GL192352.1 samtools variation 4184382 4184382 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192352.1 samtools variation 4185721 4185721 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL192352.1 samtools variation 4188414 4188414 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192352.1 samtools variation 4188943 4188943 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192352.1 samtools variation 4188957 4188957 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192352.1 samtools variation 4189114 4189114 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192352.1 samtools variation 4296419 4296419 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192352.1 samtools variation 4327281 4327281 . . . alleles " A G"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL192354.1 samtools variation 91222 91222 . . . alleles " A G"; frequencies " 0.424460431654676 0.575539568345324"; depth 695 ; unknown ; synonymous GL192354.1 samtools variation 116088 116088 . . . alleles " G C"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; N/A GL192354.1 samtools variation 116560 116560 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192354.1 samtools variation 116964 116964 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; synonymous GL192354.1 samtools variation 128357 128357 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; non-synonymous GL192354.1 samtools variation 174973 174973 . . . alleles " G T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 189985 189985 . . . alleles " T A"; frequencies " 0.608247422680412 0.391752577319588"; depth 97 ; unknown ; synonymous GL192354.1 samtools variation 282596 282596 . . . alleles " T C"; frequencies " 0.701923076923077 0.298076923076923"; depth 104 ; unknown ; synonymous GL192354.1 samtools variation 329826 329826 . . . alleles " C T"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192354.1 samtools variation 331596 331596 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192354.1 samtools variation 331866 331866 . . . alleles " T C"; frequencies " 0.558139534883721 0.441860465116279"; depth 43 ; unknown ; N/A GL192354.1 samtools variation 336736 336736 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192354.1 samtools variation 388966 388966 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192354.1 samtools variation 870933 870933 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192354.1 samtools variation 873318 873318 . . . alleles " C T"; frequencies " 0.530973451327434 0.469026548672566"; depth 113 ; unknown ; synonymous GL192354.1 samtools variation 884445 884445 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192354.1 samtools variation 892310 892310 . . . alleles " T A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 900579 900579 . . . alleles " G T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 925548 925548 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 925637 925637 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192354.1 samtools variation 930039 930039 . . . alleles " G T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL192354.1 samtools variation 930586 930586 . . . alleles " T C"; frequencies " 0.219387755102041 0.780612244897959"; depth 196 ; known ; synonymous GL192354.1 samtools variation 930599 930599 . . . alleles " G A"; frequencies " 0.789772727272727 0.210227272727273"; depth 176 ; unknown ; non-synonymous GL192354.1 samtools variation 934385 934385 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL192354.1 samtools variation 935279 935279 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192354.1 samtools variation 940341 940341 . . . alleles " G C"; frequencies " 0.702247191011236 0.297752808988764"; depth 178 ; unknown ; N/A GL192354.1 samtools variation 941283 941283 . . . alleles " G T"; frequencies " 0.790575916230366 0.209424083769634"; depth 191 ; unknown ; N/A GL192354.1 samtools variation 944291 944291 . . . alleles " T C"; frequencies " 0.702380952380952 0.297619047619048"; depth 168 ; known ; synonymous GL192354.1 samtools variation 944439 944439 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 44 ; known ; N/A GL192354.1 samtools variation 946933 946933 . . . alleles " G A"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; unknown ; synonymous GL192354.1 samtools variation 947563 947563 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 44 ; known ; non-synonymous GL192354.1 samtools variation 993340 993340 . . . alleles " C A"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192354.1 samtools variation 1013020 1013020 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 1020384 1020384 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 1026670 1026670 . . . alleles " C A"; frequencies " 0.759259259259259 0.240740740740741"; depth 54 ; unknown ; N/A GL192354.1 samtools variation 1026671 1026671 . . . alleles " C A"; frequencies " 0.759259259259259 0.240740740740741"; depth 54 ; unknown ; N/A GL192354.1 samtools variation 1027364 1027364 . . . alleles " G T"; frequencies " 0.696629213483146 0.303370786516854"; depth 89 ; unknown ; N/A GL192354.1 samtools variation 1027366 1027366 . . . alleles " G C"; frequencies " 0.766666666666667 0.233333333333333"; depth 90 ; unknown ; N/A GL192354.1 samtools variation 1029977 1029977 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; non-synonymous GL192354.1 samtools variation 1069786 1069786 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL192354.1 samtools variation 1074707 1074707 . . . alleles " A T"; frequencies " 0.677215189873418 0.322784810126582"; depth 316 ; unknown ; N/A GL192354.1 samtools variation 1077973 1077973 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 120 ; unknown ; non-synonymous GL192354.1 samtools variation 1100209 1100209 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192354.1 samtools variation 1103589 1103589 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 1103655 1103655 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192354.1 samtools variation 1105052 1105052 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192354.1 samtools variation 1106435 1106435 . . . alleles " G A"; frequencies " 0.775 0.225"; depth 40 ; unknown ; N/A GL192354.1 samtools variation 1107298 1107298 . . . alleles " A G"; frequencies " 0.656934306569343 0.343065693430657"; depth 137 ; unknown ; N/A GL192354.1 samtools variation 1107683 1107683 . . . alleles " A G"; frequencies " 0.765625 0.234375"; depth 64 ; unknown ; N/A GL192354.1 samtools variation 1109081 1109081 . . . alleles " A C"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL192354.1 samtools variation 1109790 1109790 . . . alleles " A G"; frequencies " 0.719626168224299 0.280373831775701"; depth 107 ; unknown ; N/A GL192354.1 samtools variation 1111505 1111505 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192354.1 samtools variation 1113842 1113842 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 1126360 1126360 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192354.1 samtools variation 1143996 1143996 . . . alleles " G A"; frequencies " 0.68 0.32"; depth 75 ; unknown ; N/A GL192354.1 samtools variation 1144000 1144000 . . . alleles " T C"; frequencies " 0.698412698412698 0.301587301587302"; depth 63 ; unknown ; N/A GL192354.1 samtools variation 1145825 1145825 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 126 ; unknown ; N/A GL192354.1 samtools variation 1146483 1146483 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192354.1 samtools variation 1147180 1147180 . . . alleles " G A"; frequencies " 0.210526315789474 0.789473684210526"; depth 38 ; known ; N/A GL192354.1 samtools variation 1147420 1147420 . . . alleles " T C"; frequencies " 0.557377049180328 0.442622950819672"; depth 61 ; unknown ; N/A GL192354.1 samtools variation 1147738 1147738 . . . alleles " A G"; frequencies " 0.629032258064516 0.370967741935484"; depth 62 ; unknown ; N/A GL192354.1 samtools variation 1147804 1147804 . . . alleles " C A"; frequencies " 0.643835616438356 0.356164383561644"; depth 73 ; unknown ; N/A GL192354.1 samtools variation 1147847 1147847 . . . alleles " G A"; frequencies " 0.67948717948718 0.320512820512821"; depth 78 ; unknown ; N/A GL192354.1 samtools variation 1147895 1147895 . . . alleles " C T"; frequencies " 0.775 0.225"; depth 40 ; unknown ; N/A GL192354.1 samtools variation 1148021 1148021 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192354.1 samtools variation 1148072 1148072 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 1148285 1148285 . . . alleles " G T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192354.1 samtools variation 1148725 1148725 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192354.1 samtools variation 1148909 1148909 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192354.1 samtools variation 1150468 1150468 . . . alleles " G T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192354.1 samtools variation 1151464 1151464 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192354.1 samtools variation 1155293 1155293 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192354.1 samtools variation 1155834 1155834 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL192354.1 samtools variation 1155948 1155948 . . . alleles " A C"; frequencies " 0.620253164556962 0.379746835443038"; depth 79 ; unknown ; N/A GL192354.1 samtools variation 1155952 1155952 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 80 ; unknown ; N/A GL192354.1 samtools variation 1159792 1159792 . . . alleles " T C"; frequencies " 0.525 0.475"; depth 40 ; unknown ; N/A GL192354.1 samtools variation 1160858 1160858 . . . alleles " T C"; frequencies " 0.563636363636364 0.436363636363636"; depth 55 ; unknown ; N/A GL192354.1 samtools variation 1161610 1161610 . . . alleles " C A"; frequencies " 0.676056338028169 0.323943661971831"; depth 71 ; unknown ; N/A GL192354.1 samtools variation 1164284 1164284 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 91 ; unknown ; N/A GL192354.1 samtools variation 1168157 1168157 . . . alleles " C G"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL192354.1 samtools variation 1168427 1168427 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192354.1 samtools variation 1168472 1168472 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192354.1 samtools variation 1168859 1168859 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192354.1 samtools variation 1198367 1198367 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 1413089 1413089 . . . alleles " C A"; frequencies " 0.358974358974359 0.641025641025641"; depth 39 ; known ; non-synonymous GL192354.1 samtools variation 1418027 1418027 . . . alleles " G A"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; known ; non-synonymous GL192354.1 samtools variation 1418223 1418223 . . . alleles " G T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; non-synonymous GL192354.1 samtools variation 1446796 1446796 . . . alleles " C T"; frequencies " 0.327586206896552 0.672413793103448"; depth 58 ; unknown ; synonymous GL192354.1 samtools variation 1447614 1447614 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192354.1 samtools variation 1448709 1448709 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192354.1 samtools variation 1448714 1448714 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192354.1 samtools variation 1484665 1484665 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192354.1 samtools variation 1594655 1594655 . . . alleles " G T"; frequencies " 0.246376811594203 0.753623188405797"; depth 69 ; unknown ; non-synonymous GL192354.1 samtools variation 1594661 1594661 . . . alleles " G T"; frequencies " 0.732394366197183 0.267605633802817"; depth 71 ; unknown ; non-synonymous GL192354.1 samtools variation 1602358 1602358 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192354.1 samtools variation 1605748 1605748 . . . alleles " G A"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192354.1 samtools variation 1650009 1650009 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; synonymous GL192354.1 samtools variation 1767747 1767747 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192354.1 samtools variation 1841641 1841641 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192354.1 samtools variation 1841686 1841686 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192354.1 samtools variation 1842073 1842073 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192354.1 samtools variation 1842440 1842440 . . . alleles " T C"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; known ; N/A GL192354.1 samtools variation 1845978 1845978 . . . alleles " G C"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; N/A GL192354.1 samtools variation 1848117 1848117 . . . alleles " G A"; frequencies " 0.489795918367347 0.510204081632653"; depth 49 ; unknown ; N/A GL192354.1 samtools variation 1848268 1848268 . . . alleles " C T"; frequencies " 0.443478260869565 0.556521739130435"; depth 115 ; unknown ; N/A GL192354.1 samtools variation 1851060 1851060 . . . alleles " T C"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192354.1 samtools variation 1851088 1851088 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192354.1 samtools variation 1871595 1871595 . . . alleles " C T"; frequencies " 0.757142857142857 0.242857142857143"; depth 70 ; unknown ; synonymous GL192354.1 samtools variation 1877425 1877425 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 24 ; unknown ; synonymous GL192354.1 samtools variation 1878275 1878275 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192354.1 samtools variation 1882247 1882247 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192354.1 samtools variation 1883883 1883883 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 1887489 1887489 . . . alleles " A G"; frequencies " 0.257425742574257 0.742574257425743"; depth 101 ; unknown ; N/A GL192354.1 samtools variation 1941188 1941188 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192354.1 samtools variation 1944357 1944357 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192354.1 samtools variation 1944802 1944802 . . . alleles " T C"; frequencies " 0.389221556886228 0.610778443113772"; depth 167 ; unknown ; synonymous GL192354.1 samtools variation 1947893 1947893 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192354.1 samtools variation 1956059 1956059 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192354.1 samtools variation 1956737 1956737 . . . alleles " C T"; frequencies " 0.436363636363636 0.563636363636364"; depth 55 ; unknown ; N/A GL192354.1 samtools variation 1956977 1956977 . . . alleles " C G"; frequencies " 0.398773006134969 0.601226993865031"; depth 163 ; unknown ; N/A GL192354.1 samtools variation 1957669 1957669 . . . alleles " T C"; frequencies " 0.325581395348837 0.674418604651163"; depth 43 ; unknown ; N/A GL192354.1 samtools variation 1957875 1957875 . . . alleles " A G"; frequencies " 0.350649350649351 0.649350649350649"; depth 154 ; unknown ; N/A GL192354.1 samtools variation 1958024 1958024 . . . alleles " A G"; frequencies " 0.439189189189189 0.560810810810811"; depth 148 ; unknown ; N/A GL192354.1 samtools variation 2030550 2030550 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192354.1 samtools variation 2126719 2126719 . . . alleles " C A"; frequencies " 0.633858267716535 0.366141732283465"; depth 254 ; unknown ; non-synonymous GL192354.1 samtools variation 2129934 2129934 . . . alleles " T C"; frequencies " 0.217821782178218 0.782178217821782"; depth 101 ; unknown ; synonymous GL192354.1 samtools variation 2130729 2130729 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192354.1 samtools variation 2133441 2133441 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 112 ; unknown ; N/A GL192354.1 samtools variation 2177473 2177473 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192354.1 samtools variation 2193974 2193974 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192354.1 samtools variation 2198195 2198195 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 143 ; unknown ; N/A GL192354.1 samtools variation 2201135 2201135 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 90 ; unknown ; synonymous GL192354.1 samtools variation 2224751 2224751 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192354.1 samtools variation 2226423 2226423 . . . alleles " A C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192354.1 samtools variation 2228728 2228728 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192354.1 samtools variation 2228765 2228765 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192354.1 samtools variation 2228883 2228883 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 2243948 2243948 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192354.1 samtools variation 2255751 2255751 . . . alleles " A G"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL192354.1 samtools variation 2262850 2262850 . . . alleles " C A"; frequencies " 0.521739130434783 0.478260869565217"; depth 483 ; unknown ; non-synonymous GL192354.1 samtools variation 2262875 2262875 . . . alleles " C T"; frequencies " 0.303675048355899 0.696324951644101"; depth 517 ; unknown ; non-synonymous GL192354.1 samtools variation 2270681 2270681 . . . alleles " C T"; frequencies " 0.68 0.32"; depth 100 ; unknown ; non-synonymous GL192354.1 samtools variation 2271435 2271435 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192354.1 samtools variation 2360234 2360234 . . . alleles " T G"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL192354.1 samtools variation 2362077 2362077 . . . alleles " G C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192354.1 samtools variation 2370365 2370365 . . . alleles " A G"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; known ; N/A GL192354.1 samtools variation 2379851 2379851 . . . alleles " T G"; frequencies " 0.479166666666667 0.520833333333333"; depth 48 ; unknown ; non-synonymous GL192354.1 samtools variation 2406026 2406026 . . . alleles " T C"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL192354.1 samtools variation 2515050 2515050 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; N/A GL192354.1 samtools variation 2515869 2515869 . . . alleles " T C"; frequencies " 0.660714285714286 0.339285714285714"; depth 56 ; unknown ; synonymous GL192354.1 samtools variation 2552889 2552889 . . . alleles " A C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192354.1 samtools variation 2563514 2563514 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192354.1 samtools variation 2563515 2563515 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192354.1 samtools variation 2565743 2565743 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192354.1 samtools variation 2611102 2611102 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 2627558 2627558 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; synonymous GL192354.1 samtools variation 2661018 2661018 . . . alleles " C A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192354.1 samtools variation 2722570 2722570 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192354.1 samtools variation 2727752 2727752 . . . alleles " T C"; frequencies " 0.258426966292135 0.741573033707865"; depth 89 ; unknown ; N/A GL192354.1 samtools variation 2729167 2729167 . . . alleles " G A"; frequencies " 0.391304347826087 0.608695652173913"; depth 138 ; unknown ; N/A GL192354.1 samtools variation 2730703 2730703 . . . alleles " C T"; frequencies " 0.609375 0.390625"; depth 64 ; unknown ; synonymous GL192354.1 samtools variation 2730940 2730940 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 40 ; unknown ; synonymous GL192354.1 samtools variation 2925488 2925488 . . . alleles " T C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192354.1 samtools variation 2925503 2925503 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL192354.1 samtools variation 2956683 2956683 . . . alleles " G A"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; unknown ; N/A GL192354.1 samtools variation 2956823 2956823 . . . alleles " T C"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; known ; N/A GL192354.1 samtools variation 2957142 2957142 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192354.1 samtools variation 2959702 2959702 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192354.1 samtools variation 2971922 2971922 . . . alleles " A G"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; unknown ; synonymous GL192354.1 samtools variation 3036685 3036685 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192354.1 samtools variation 3036839 3036839 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192354.1 samtools variation 3037666 3037666 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192354.1 samtools variation 3037803 3037803 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192354.1 samtools variation 3039350 3039350 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192354.1 samtools variation 3039476 3039476 . . . alleles " T C"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; known ; N/A GL192354.1 samtools variation 3039663 3039663 . . . alleles " A G"; frequencies " 0.514705882352941 0.485294117647059"; depth 68 ; known ; N/A GL192354.1 samtools variation 3039759 3039759 . . . alleles " A G"; frequencies " 0.552238805970149 0.447761194029851"; depth 67 ; known ; N/A GL192354.1 samtools variation 3039814 3039814 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192354.1 samtools variation 3039911 3039911 . . . alleles " T G"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL192354.1 samtools variation 3039924 3039924 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192354.1 samtools variation 3041553 3041553 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192354.1 samtools variation 3042826 3042826 . . . alleles " C T"; frequencies " 0.548387096774194 0.451612903225806"; depth 124 ; known ; N/A GL192354.1 samtools variation 3043564 3043564 . . . alleles " C A"; frequencies " 0.58695652173913 0.41304347826087"; depth 184 ; known ; N/A GL192354.1 samtools variation 3043668 3043668 . . . alleles " A G"; frequencies " 0.592105263157895 0.407894736842105"; depth 76 ; known ; N/A GL192354.1 samtools variation 3046140 3046140 . . . alleles " G T"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL192354.1 samtools variation 3048103 3048103 . . . alleles " G T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192354.1 samtools variation 3048424 3048424 . . . alleles " T G"; frequencies " 0.775478927203065 0.224521072796935"; depth 1305 ; known ; N/A GL192354.1 samtools variation 3048486 3048486 . . . alleles " C G"; frequencies " 0.771197007481297 0.228802992518703"; depth 1604 ; unknown ; N/A GL192354.1 samtools variation 3048743 3048743 . . . alleles " T C"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL192354.1 samtools variation 3057650 3057650 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192354.1 samtools variation 3057663 3057663 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192354.1 samtools variation 3057756 3057756 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192354.1 samtools variation 3084133 3084133 . . . alleles " C G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192354.1 samtools variation 3084165 3084165 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192354.1 samtools variation 3087832 3087832 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192354.1 samtools variation 3093980 3093980 . . . alleles " C T"; frequencies " 0.330827067669173 0.669172932330827"; depth 133 ; known ; synonymous GL192354.1 samtools variation 3094437 3094437 . . . alleles " C T"; frequencies " 0.341317365269461 0.658682634730539"; depth 501 ; known ; non-synonymous GL192354.1 samtools variation 3094623 3094623 . . . alleles " C G"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; N/A GL192354.1 samtools variation 3179546 3179546 . . . alleles " G T"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; unknown ; synonymous GL192354.1 samtools variation 3180256 3180256 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; known ; synonymous GL192354.1 samtools variation 3186679 3186679 . . . alleles " G A"; frequencies " 0.794871794871795 0.205128205128205"; depth 78 ; unknown ; N/A GL192354.1 samtools variation 3219050 3219050 . . . alleles " G C"; frequencies " 0.650602409638554 0.337349397590361"; depth 83 ; known ; N/A GL192354.1 samtools variation 3219681 3219681 . . . alleles " G T"; frequencies " 0.486842105263158 0.513157894736842"; depth 76 ; unknown ; N/A GL192354.1 samtools variation 3219975 3219975 . . . alleles " A T"; frequencies " 0.543478260869565 0.456521739130435"; depth 46 ; unknown ; N/A GL192354.1 samtools variation 3220304 3220304 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192354.1 samtools variation 3268745 3268745 . . . alleles " G A"; frequencies " 0.213872832369942 0.786127167630058"; depth 173 ; unknown ; non-synonymous GL192354.1 samtools variation 3272188 3272188 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192354.1 samtools variation 3273320 3273320 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192354.1 samtools variation 3275740 3275740 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192354.1 samtools variation 3276380 3276380 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192354.1 samtools variation 3276405 3276405 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192354.1 samtools variation 3277838 3277838 . . . alleles " A T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192354.1 samtools variation 3283750 3283750 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 3287576 3287576 . . . alleles " T G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192354.1 samtools variation 3287935 3287935 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192354.1 samtools variation 3288081 3288081 . . . alleles " C T"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL192354.1 samtools variation 3288459 3288459 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192354.1 samtools variation 3288875 3288875 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192354.1 samtools variation 3288879 3288879 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192354.1 samtools variation 3491198 3491198 . . . alleles " C T"; frequencies " 0.326530612244898 0.673469387755102"; depth 49 ; unknown ; N/A GL192354.1 samtools variation 3699334 3699334 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192354.1 samtools variation 3758779 3758779 . . . alleles " C T"; frequencies " 0.578512396694215 0.421487603305785"; depth 121 ; known ; synonymous GL192354.1 samtools variation 3829834 3829834 . . . alleles " G T"; frequencies " 0.622222222222222 0.377777777777778"; depth 45 ; unknown ; synonymous GL192354.1 samtools variation 4035202 4035202 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192354.1 samtools variation 4037558 4037558 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192354.1 samtools variation 4037917 4037917 . . . alleles " C T"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; N/A GL192354.1 samtools variation 4041788 4041788 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192354.1 samtools variation 4041824 4041824 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192354.1 samtools variation 4042086 4042086 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192354.1 samtools variation 4065814 4065814 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; unknown ; N/A GL192354.1 samtools variation 4065883 4065883 . . . alleles " C T"; frequencies " 0.27027027027027 0.72972972972973"; depth 37 ; unknown ; N/A GL192354.1 samtools variation 4065915 4065915 . . . alleles " C G"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; unknown ; N/A GL192354.1 samtools variation 4066510 4066510 . . . alleles " G A"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; unknown ; N/A GL192354.1 samtools variation 4066962 4066962 . . . alleles " C A"; frequencies " 0.574074074074074 0.425925925925926"; depth 54 ; unknown ; N/A GL192354.1 samtools variation 4071030 4071030 . . . alleles " G A"; frequencies " 0.51702786377709 0.48297213622291"; depth 323 ; unknown ; synonymous GL192354.1 samtools variation 4132216 4132216 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192354.1 samtools variation 4172569 4172569 . . . alleles " A G"; frequencies " 0.736654804270463 0.263345195729537"; depth 281 ; unknown ; synonymous GL192354.1 samtools variation 4172602 4172602 . . . alleles " C G"; frequencies " 0.296296296296296 0.703703703703704"; depth 216 ; unknown ; synonymous GL192354.1 samtools variation 4172626 4172626 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 126 ; unknown ; synonymous GL192354.1 samtools variation 4172674 4172674 . . . alleles " G A"; frequencies " 0.343283582089552 0.656716417910448"; depth 67 ; unknown ; synonymous GL192354.1 samtools variation 4188522 4188522 . . . alleles " G T"; frequencies " 0.540540540540541 0.459459459459459"; depth 37 ; known ; N/A GL192354.1 samtools variation 4188852 4188852 . . . alleles " A G"; frequencies " 0.372093023255814 0.627906976744186"; depth 43 ; known ; synonymous GL192354.1 samtools variation 4190642 4190642 . . . alleles " A G"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; synonymous GL192354.1 samtools variation 4191443 4191443 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192354.1 samtools variation 4196266 4196266 . . . alleles " T C"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; synonymous GL192354.1 samtools variation 4196473 4196473 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192354.1 samtools variation 4202114 4202114 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; synonymous GL192354.1 samtools variation 4240776 4240776 . . . alleles " T C"; frequencies " 0.547619047619048 0.452380952380952"; depth 42 ; unknown ; synonymous GL192354.1 samtools variation 4240782 4240782 . . . alleles " C T"; frequencies " 0.56 0.44"; depth 50 ; unknown ; synonymous GL192354.1 samtools variation 4241675 4241675 . . . alleles " C T"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192354.1 samtools variation 4241767 4241767 . . . alleles " C T"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; unknown ; N/A GL192354.1 samtools variation 4243671 4243671 . . . alleles " A G"; frequencies " 0.394736842105263 0.605263157894737"; depth 38 ; unknown ; N/A GL192354.1 samtools variation 4243986 4243986 . . . alleles " T C"; frequencies " 0.269230769230769 0.730769230769231"; depth 52 ; unknown ; N/A GL192354.1 samtools variation 4244457 4244457 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192354.1 samtools variation 4244463 4244463 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192354.1 samtools variation 4244677 4244677 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192355.1 samtools variation 109002 109002 . . . alleles " A G"; frequencies " 0.423076923076923 0.576923076923077"; depth 52 ; known ; non-synonymous GL192355.1 samtools variation 126957 126957 . . . alleles " T C"; frequencies " 0.462962962962963 0.537037037037037"; depth 54 ; known ; N/A GL192355.1 samtools variation 140418 140418 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL192355.1 samtools variation 140491 140491 . . . alleles " G A"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; known ; N/A GL192355.1 samtools variation 140596 140596 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; known ; N/A GL192355.1 samtools variation 149756 149756 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192355.1 samtools variation 216889 216889 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL192355.1 samtools variation 317700 317700 . . . alleles " T A"; frequencies " 0.56 0.44"; depth 50 ; unknown ; N/A GL192355.1 samtools variation 317701 317701 . . . alleles " C A"; frequencies " 0.568627450980392 0.431372549019608"; depth 51 ; unknown ; N/A GL192355.1 samtools variation 318740 318740 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192355.1 samtools variation 319152 319152 . . . alleles " A T"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192355.1 samtools variation 320207 320207 . . . alleles " A T"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL192355.1 samtools variation 353209 353209 . . . alleles " C T"; frequencies " 0.711864406779661 0.288135593220339"; depth 59 ; known ; N/A GL192355.1 samtools variation 385727 385727 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192355.1 samtools variation 385952 385952 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192355.1 samtools variation 387126 387126 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192355.1 samtools variation 415853 415853 . . . alleles " G T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192355.1 samtools variation 480240 480240 . . . alleles " G A"; frequencies " 0.531645569620253 0.468354430379747"; depth 158 ; known ; non-synonymous GL192355.1 samtools variation 496440 496440 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192355.1 samtools variation 529434 529434 . . . alleles " T C"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; synonymous GL192355.1 samtools variation 531093 531093 . . . alleles " T A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192355.1 samtools variation 668461 668461 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 51 ; known ; N/A GL192355.1 samtools variation 668515 668515 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 42 ; known ; N/A GL192355.1 samtools variation 669261 669261 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192355.1 samtools variation 669267 669267 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192355.1 samtools variation 725249 725249 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192355.1 samtools variation 725263 725263 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL192355.1 samtools variation 737738 737738 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 64 ; unknown ; N/A GL192355.1 samtools variation 737812 737812 . . . alleles " T C"; frequencies " 0.765957446808511 0.234042553191489"; depth 47 ; unknown ; N/A GL192355.1 samtools variation 738575 738575 . . . alleles " C T"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; unknown ; N/A GL192355.1 samtools variation 738612 738612 . . . alleles " C T"; frequencies " 0.688888888888889 0.311111111111111"; depth 45 ; unknown ; N/A GL192355.1 samtools variation 739610 739610 . . . alleles " G A"; frequencies " 0.737373737373737 0.262626262626263"; depth 99 ; known ; N/A GL192355.1 samtools variation 740069 740069 . . . alleles " C T"; frequencies " 0.782608695652174 0.202898550724638"; depth 69 ; unknown ; N/A GL192355.1 samtools variation 741094 741094 . . . alleles " C T"; frequencies " 0.725490196078431 0.274509803921569"; depth 51 ; unknown ; N/A GL192355.1 samtools variation 742155 742155 . . . alleles " T C"; frequencies " 0.309090909090909 0.690909090909091"; depth 55 ; known ; N/A GL192355.1 samtools variation 742311 742311 . . . alleles " G A"; frequencies " 0.788461538461538 0.211538461538462"; depth 104 ; unknown ; N/A GL192355.1 samtools variation 742395 742395 . . . alleles " A G"; frequencies " 0.716666666666667 0.283333333333333"; depth 60 ; unknown ; N/A GL192355.1 samtools variation 743657 743657 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL192355.1 samtools variation 743714 743714 . . . alleles " G A"; frequencies " 0.68 0.32"; depth 50 ; unknown ; N/A GL192355.1 samtools variation 744681 744681 . . . alleles " C G"; frequencies " 0.795918367346939 0.204081632653061"; depth 49 ; known ; N/A GL192355.1 samtools variation 745669 745669 . . . alleles " C T"; frequencies " 0.722627737226277 0.277372262773723"; depth 137 ; unknown ; N/A GL192355.1 samtools variation 745755 745755 . . . alleles " C T"; frequencies " 0.726457399103139 0.273542600896861"; depth 223 ; unknown ; N/A GL192355.1 samtools variation 746501 746501 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 132 ; unknown ; N/A GL192355.1 samtools variation 746656 746656 . . . alleles " G A"; frequencies " 0.760683760683761 0.239316239316239"; depth 351 ; unknown ; N/A GL192355.1 samtools variation 1789602 1789602 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192355.1 samtools variation 1800313 1800313 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192355.1 samtools variation 1809622 1809622 . . . alleles " T C"; frequencies " 0.46551724137931 0.53448275862069"; depth 116 ; unknown ; synonymous GL192355.1 samtools variation 1926035 1926035 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192355.1 samtools variation 1946457 1946457 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 25 ; known ; N/A GL192355.1 samtools variation 1946477 1946477 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; known ; N/A GL192355.1 samtools variation 1947117 1947117 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192355.1 samtools variation 1948844 1948844 . . . alleles " T C"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; known ; non-synonymous GL192355.1 samtools variation 1949064 1949064 . . . alleles " C T"; frequencies " 0.381165919282511 0.618834080717489"; depth 223 ; known ; non-synonymous GL192355.1 samtools variation 1971238 1971238 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192355.1 samtools variation 1973425 1973425 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 87 ; unknown ; non-synonymous GL192355.1 samtools variation 1994350 1994350 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192355.1 samtools variation 2617478 2617478 . . . alleles " T C"; frequencies " 0.694323144104803 0.305676855895196"; depth 229 ; unknown ; N/A GL192355.1 samtools variation 2621765 2621765 . . . alleles " C G"; frequencies " 0.285714285714286 0.714285714285714"; depth 35 ; known ; N/A GL192355.1 samtools variation 2631919 2631919 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192355.1 samtools variation 2677088 2677088 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL192355.1 samtools variation 2677487 2677487 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192355.1 samtools variation 2712253 2712253 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192355.1 samtools variation 2713997 2713997 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192355.1 samtools variation 2714352 2714352 . . . alleles " G A"; frequencies " 0.28 0.72"; depth 25 ; unknown ; N/A GL192355.1 samtools variation 2714549 2714549 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 25 ; known ; N/A GL192355.1 samtools variation 2719014 2719014 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192355.1 samtools variation 2719999 2719999 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192355.1 samtools variation 2721926 2721926 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192355.1 samtools variation 2730184 2730184 . . . alleles " T A"; frequencies " 0.782608695652174 0.217391304347826"; depth 92 ; unknown ; N/A GL192355.1 samtools variation 2731248 2731248 . . . alleles " G A"; frequencies " 0.752941176470588 0.247058823529412"; depth 85 ; unknown ; N/A GL192355.1 samtools variation 2731451 2731451 . . . alleles " G A"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; unknown ; N/A GL192355.1 samtools variation 2732733 2732733 . . . alleles " A C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192355.1 samtools variation 2776655 2776655 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192355.1 samtools variation 2782187 2782187 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192355.1 samtools variation 2782210 2782210 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192355.1 samtools variation 2782252 2782252 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192355.1 samtools variation 2782256 2782256 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192355.1 samtools variation 2782549 2782549 . . . alleles " G T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192355.1 samtools variation 2782577 2782577 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192355.1 samtools variation 2782648 2782648 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192355.1 samtools variation 2782717 2782717 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL192355.1 samtools variation 2788065 2788065 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192355.1 samtools variation 2788135 2788135 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192355.1 samtools variation 3107540 3107540 . . . alleles " T C"; frequencies " 0.679012345679012 0.320987654320988"; depth 81 ; unknown ; N/A GL192355.1 samtools variation 3107813 3107813 . . . alleles " A G"; frequencies " 0.490909090909091 0.509090909090909"; depth 55 ; unknown ; N/A GL192355.1 samtools variation 3107853 3107853 . . . alleles " G A"; frequencies " 0.573333333333333 0.426666666666667"; depth 75 ; known ; N/A GL192355.1 samtools variation 4317266 4317266 . . . alleles " A T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL192355.1 samtools variation 4317637 4317637 . . . alleles " T C"; frequencies " 0.761194029850746 0.238805970149254"; depth 67 ; known ; synonymous GL192355.1 samtools variation 4319139 4319139 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 32 ; known ; non-synonymous GL192355.1 samtools variation 4319300 4319300 . . . alleles " A G"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; known ; non-synonymous GL192355.1 samtools variation 4319341 4319341 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 30 ; known ; synonymous GL192355.1 samtools variation 4319366 4319366 . . . alleles " A G"; frequencies " 0.246153846153846 0.753846153846154"; depth 65 ; known ; non-synonymous GL192355.1 samtools variation 4355089 4355089 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 30 ; known ; non-synonymous GL192356.1 samtools variation 27280 27280 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192356.1 samtools variation 27847 27847 . . . alleles " C G"; frequencies " 0.781818181818182 0.218181818181818"; depth 55 ; unknown ; N/A GL192356.1 samtools variation 27895 27895 . . . alleles " A T"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192356.1 samtools variation 28556 28556 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192356.1 samtools variation 31667 31667 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192356.1 samtools variation 32538 32538 . . . alleles " A G"; frequencies " 0.758620689655172 0.241379310344828"; depth 174 ; unknown ; N/A GL192356.1 samtools variation 33774 33774 . . . alleles " G A"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL192356.1 samtools variation 177227 177227 . . . alleles " T C"; frequencies " 0.779005524861878 0.220994475138122"; depth 362 ; unknown ; non-synonymous GL192356.1 samtools variation 177395 177395 . . . alleles " C T"; frequencies " 0.220703125 0.77734375"; depth 512 ; known ; non-synonymous GL192356.1 samtools variation 195815 195815 . . . alleles " A G"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; unknown ; N/A GL192356.1 samtools variation 196950 196950 . . . alleles " G A"; frequencies " 0.7521815008726 0.2478184991274"; depth 573 ; unknown ; N/A GL192356.1 samtools variation 197702 197702 . . . alleles " C A"; frequencies " 0.765957446808511 0.234042553191489"; depth 94 ; unknown ; N/A GL192356.1 samtools variation 198018 198018 . . . alleles " C A"; frequencies " 0.693877551020408 0.306122448979592"; depth 392 ; unknown ; N/A GL192356.1 samtools variation 198128 198128 . . . alleles " T G"; frequencies " 0.61734693877551 0.38265306122449"; depth 196 ; unknown ; N/A GL192356.1 samtools variation 198550 198550 . . . alleles " C T"; frequencies " 0.783505154639175 0.216494845360825"; depth 97 ; unknown ; N/A GL192356.1 samtools variation 201073 201073 . . . alleles " G T"; frequencies " 0.244444444444444 0.755555555555556"; depth 45 ; known ; N/A GL192356.1 samtools variation 267473 267473 . . . alleles " A G"; frequencies " 0.596153846153846 0.403846153846154"; depth 52 ; known ; synonymous GL192356.1 samtools variation 292109 292109 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; synonymous GL192356.1 samtools variation 305041 305041 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 75 ; unknown ; synonymous GL192356.1 samtools variation 919559 919559 . . . alleles " C T"; frequencies " 0.405405405405405 0.594594594594595"; depth 37 ; unknown ; N/A GL192356.1 samtools variation 976955 976955 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192356.1 samtools variation 977452 977452 . . . alleles " T G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192356.1 samtools variation 978165 978165 . . . alleles " C T"; frequencies " 0.741379310344828 0.258620689655172"; depth 116 ; unknown ; N/A GL192356.1 samtools variation 978487 978487 . . . alleles " A G"; frequencies " 0.644444444444444 0.355555555555556"; depth 45 ; unknown ; N/A GL192356.1 samtools variation 983118 983118 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192356.1 samtools variation 983452 983452 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; non-synonymous GL192356.1 samtools variation 983940 983940 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; synonymous GL192356.1 samtools variation 986094 986094 . . . alleles " T C"; frequencies " 0.627906976744186 0.372093023255814"; depth 43 ; unknown ; N/A GL192356.1 samtools variation 987145 987145 . . . alleles " A G"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL192356.1 samtools variation 987493 987493 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL192356.1 samtools variation 987521 987521 . . . alleles " A G"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL192356.1 samtools variation 1009358 1009358 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 48 ; unknown ; non-synonymous GL192356.1 samtools variation 1037342 1037342 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; synonymous GL192356.1 samtools variation 1135806 1135806 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192356.1 samtools variation 1138608 1138608 . . . alleles " A C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192356.1 samtools variation 1274224 1274224 . . . alleles " A G"; frequencies " 0.528571428571429 0.471428571428571"; depth 70 ; unknown ; synonymous GL192356.1 samtools variation 1290703 1290703 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192356.1 samtools variation 1443881 1443881 . . . alleles " C A"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192356.1 samtools variation 1744315 1744315 . . . alleles " C T"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; unknown ; N/A GL192356.1 samtools variation 1782969 1782969 . . . alleles " C T"; frequencies " 0.746478873239437 0.253521126760563"; depth 71 ; unknown ; synonymous GL192356.1 samtools variation 1793446 1793446 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL192356.1 samtools variation 1978319 1978319 . . . alleles " G T"; frequencies " 0.55 0.45"; depth 60 ; unknown ; N/A GL192356.1 samtools variation 2073125 2073125 . . . alleles " A G"; frequencies " 0.56 0.44"; depth 50 ; unknown ; N/A GL192356.1 samtools variation 2144202 2144202 . . . alleles " A G"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192356.1 samtools variation 2152515 2152515 . . . alleles " C T"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL192356.1 samtools variation 2205047 2205047 . . . alleles " T A"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL192356.1 samtools variation 2210123 2210123 . . . alleles " C T"; frequencies " 0.486486486486487 0.513513513513513"; depth 37 ; unknown ; N/A GL192356.1 samtools variation 2259936 2259936 . . . alleles " G A"; frequencies " 0.51063829787234 0.48936170212766"; depth 47 ; unknown ; N/A GL192356.1 samtools variation 2460133 2460133 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 45 ; unknown ; synonymous GL192356.1 samtools variation 2538620 2538620 . . . alleles " A G"; frequencies " 0.780748663101604 0.219251336898396"; depth 187 ; unknown ; N/A GL192356.1 samtools variation 2923206 2923206 . . . alleles " C T"; frequencies " 0.797101449275362 0.202898550724638"; depth 69 ; unknown ; N/A GL192356.1 samtools variation 2923993 2923993 . . . alleles " A G"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL192356.1 samtools variation 3293758 3293758 . . . alleles " A G"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; unknown ; synonymous GL192356.1 samtools variation 3315771 3315771 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192356.1 samtools variation 3322426 3322426 . . . alleles " C T"; frequencies " 0.557377049180328 0.442622950819672"; depth 61 ; unknown ; synonymous GL192356.1 samtools variation 3323327 3323327 . . . alleles " G T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; non-synonymous GL192356.1 samtools variation 3325974 3325974 . . . alleles " G C"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; N/A GL192356.1 samtools variation 3396403 3396403 . . . alleles " T G"; frequencies " 0.58 0.42"; depth 50 ; unknown ; synonymous GL192356.1 samtools variation 3397315 3397315 . . . alleles " A G"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; synonymous GL192356.1 samtools variation 3397762 3397762 . . . alleles " T G"; frequencies " 0.428571428571429 0.571428571428571"; depth 42 ; unknown ; synonymous GL192356.1 samtools variation 3402369 3402369 . . . alleles " A G"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; unknown ; synonymous GL192356.1 samtools variation 3402476 3402476 . . . alleles " C G"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL192356.1 samtools variation 3419448 3419448 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; synonymous GL192356.1 samtools variation 3432793 3432793 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 72 ; unknown ; N/A GL192356.1 samtools variation 3467266 3467266 . . . alleles " G A"; frequencies " 0.425 0.575"; depth 40 ; unknown ; N/A GL192356.1 samtools variation 3467834 3467834 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192356.1 samtools variation 3468605 3468605 . . . alleles " T C"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL192356.1 samtools variation 3499962 3499962 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; unknown ; N/A GL192356.1 samtools variation 3500106 3500106 . . . alleles " A C"; frequencies " 0.441860465116279 0.558139534883721"; depth 43 ; unknown ; N/A GL192356.1 samtools variation 3500635 3500635 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192356.1 samtools variation 3501389 3501389 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192356.1 samtools variation 3503933 3503933 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192356.1 samtools variation 3504518 3504518 . . . alleles " A C"; frequencies " 0.60655737704918 0.39344262295082"; depth 61 ; unknown ; N/A GL192356.1 samtools variation 3505280 3505280 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 54 ; unknown ; N/A GL192356.1 samtools variation 3505998 3505998 . . . alleles " T G"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; non-synonymous GL192356.1 samtools variation 3505999 3505999 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; synonymous GL192356.1 samtools variation 3506401 3506401 . . . alleles " C A"; frequencies " 0.651515151515151 0.348484848484849"; depth 66 ; unknown ; N/A GL192356.1 samtools variation 3506678 3506678 . . . alleles " G C"; frequencies " 0.512820512820513 0.487179487179487"; depth 39 ; unknown ; N/A GL192356.1 samtools variation 3506800 3506800 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192356.1 samtools variation 3507107 3507107 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192356.1 samtools variation 3507186 3507186 . . . alleles " G A"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL192356.1 samtools variation 3507793 3507793 . . . alleles " A T"; frequencies " 0.583333333333333 0.416666666666667"; depth 60 ; unknown ; N/A GL192356.1 samtools variation 3507838 3507838 . . . alleles " C T"; frequencies " 0.673076923076923 0.326923076923077"; depth 52 ; unknown ; N/A GL192356.1 samtools variation 3507982 3507982 . . . alleles " C T"; frequencies " 0.492537313432836 0.507462686567164"; depth 67 ; unknown ; N/A GL192356.1 samtools variation 3509029 3509029 . . . alleles " G C"; frequencies " 0.702439024390244 0.297560975609756"; depth 205 ; unknown ; N/A GL192356.1 samtools variation 3509138 3509138 . . . alleles " G A"; frequencies " 0.637065637065637 0.362934362934363"; depth 259 ; unknown ; N/A GL192356.1 samtools variation 3510329 3510329 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192356.1 samtools variation 3510339 3510339 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192356.1 samtools variation 3512292 3512292 . . . alleles " G C"; frequencies " 0.646153846153846 0.353846153846154"; depth 195 ; unknown ; N/A GL192356.1 samtools variation 3519402 3519402 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192356.1 samtools variation 3533037 3533037 . . . alleles " T C"; frequencies " 0.456521739130435 0.543478260869565"; depth 92 ; unknown ; N/A GL192356.1 samtools variation 3533256 3533256 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 50 ; unknown ; N/A GL192356.1 samtools variation 3533506 3533506 . . . alleles " A G"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; unknown ; N/A GL192356.1 samtools variation 3602637 3602637 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; synonymous GL192356.1 samtools variation 3645945 3645945 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; synonymous GL192356.1 samtools variation 3646251 3646251 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; synonymous GL192356.1 samtools variation 3649607 3649607 . . . alleles " G C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; non-synonymous GL192356.1 samtools variation 3740810 3740810 . . . alleles " A T"; frequencies " 0.525641025641026 0.474358974358974"; depth 78 ; unknown ; N/A GL192356.1 samtools variation 3741340 3741340 . . . alleles " G T"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; unknown ; N/A GL192356.1 samtools variation 3742445 3742445 . . . alleles " G A"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; unknown ; synonymous GL192356.1 samtools variation 3743230 3743230 . . . alleles " C A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192356.1 samtools variation 3745070 3745070 . . . alleles " G T"; frequencies " 0.7125 0.2875"; depth 80 ; unknown ; synonymous GL192356.1 samtools variation 3747557 3747557 . . . alleles " A G"; frequencies " 0.576271186440678 0.423728813559322"; depth 59 ; unknown ; synonymous GL192356.1 samtools variation 3781875 3781875 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192356.1 samtools variation 3782450 3782450 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192356.1 samtools variation 3782726 3782726 . . . alleles " G A"; frequencies " 0.756410256410256 0.217948717948718"; depth 78 ; unknown ; synonymous GL192356.1 samtools variation 3784053 3784053 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192356.1 samtools variation 3884916 3884916 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192356.1 samtools variation 3886751 3886751 . . . alleles " T C"; frequencies " 0.611940298507463 0.388059701492537"; depth 201 ; unknown ; N/A GL192356.1 samtools variation 3890687 3890687 . . . alleles " C A"; frequencies " 0.63265306122449 0.36734693877551"; depth 98 ; unknown ; N/A GL192356.1 samtools variation 3894350 3894350 . . . alleles " G A"; frequencies " 0.611290322580645 0.388709677419355"; depth 620 ; unknown ; synonymous GL192356.1 samtools variation 3896087 3896087 . . . alleles " C T"; frequencies " 0.680327868852459 0.319672131147541"; depth 488 ; unknown ; N/A GL192356.1 samtools variation 3905798 3905798 . . . alleles " G C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192356.1 samtools variation 3907522 3907522 . . . alleles " C T"; frequencies " 0.630434782608696 0.369565217391304"; depth 46 ; unknown ; N/A GL192356.1 samtools variation 3908411 3908411 . . . alleles " T C"; frequencies " 0.619718309859155 0.380281690140845"; depth 142 ; unknown ; non-synonymous GL192356.1 samtools variation 3952191 3952191 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192356.1 samtools variation 4057335 4057335 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 30 ; known ; N/A GL192356.1 samtools variation 4057503 4057503 . . . alleles " G T"; frequencies " 0.239130434782609 0.760869565217391"; depth 92 ; unknown ; N/A GL192356.1 samtools variation 4057504 4057504 . . . alleles " C T"; frequencies " 0.239130434782609 0.760869565217391"; depth 92 ; unknown ; N/A GL192356.1 samtools variation 4057566 4057566 . . . alleles " C T"; frequencies " 0.229357798165138 0.770642201834862"; depth 109 ; known ; N/A GL192356.1 samtools variation 4058885 4058885 . . . alleles " G T"; frequencies " 0.201754385964912 0.798245614035088"; depth 114 ; known ; N/A GL192356.1 samtools variation 4058941 4058941 . . . alleles " T C"; frequencies " 0.201754385964912 0.798245614035088"; depth 114 ; known ; N/A GL192356.1 samtools variation 4549128 4549128 . . . alleles " A G"; frequencies " 0.577540106951872 0.422459893048128"; depth 187 ; known ; synonymous GL192356.1 samtools variation 4550883 4550883 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 187 ; known ; synonymous GL192357.1 samtools variation 133084 133084 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 48 ; unknown ; non-synonymous GL192357.1 samtools variation 256355 256355 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192357.1 samtools variation 346846 346846 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192357.1 samtools variation 409198 409198 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192357.1 samtools variation 417854 417854 . . . alleles " C T"; frequencies " 0.782077393075356 0.217922606924644"; depth 491 ; unknown ; synonymous GL192357.1 samtools variation 418827 418827 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192357.1 samtools variation 427843 427843 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192357.1 samtools variation 427925 427925 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192357.1 samtools variation 429361 429361 . . . alleles " G C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192357.1 samtools variation 430914 430914 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192357.1 samtools variation 436808 436808 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 30 ; unknown ; non-synonymous GL192357.1 samtools variation 469378 469378 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192357.1 samtools variation 476736 476736 . . . alleles " T G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192357.1 samtools variation 476755 476755 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192357.1 samtools variation 480550 480550 . . . alleles " T A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192357.1 samtools variation 521673 521673 . . . alleles " A C"; frequencies " 0.466417910447761 0.533582089552239"; depth 268 ; unknown ; N/A GL192357.1 samtools variation 672918 672918 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192357.1 samtools variation 866928 866928 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; non-synonymous GL192357.1 samtools variation 877110 877110 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192357.1 samtools variation 905762 905762 . . . alleles " G A"; frequencies " 0.673913043478261 0.326086956521739"; depth 46 ; unknown ; N/A GL192357.1 samtools variation 905856 905856 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 56 ; known ; N/A GL192357.1 samtools variation 906015 906015 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192357.1 samtools variation 906959 906959 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192357.1 samtools variation 912664 912664 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192357.1 samtools variation 913874 913874 . . . alleles " G A"; frequencies " 0.737864077669903 0.262135922330097"; depth 206 ; unknown ; synonymous GL192357.1 samtools variation 914565 914565 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192357.1 samtools variation 915771 915771 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192357.1 samtools variation 920241 920241 . . . alleles " C T"; frequencies " 0.296482412060302 0.703517587939699"; depth 199 ; unknown ; N/A GL192357.1 samtools variation 920419 920419 . . . alleles " C T"; frequencies " 0.41304347826087 0.58695652173913"; depth 46 ; unknown ; N/A GL192357.1 samtools variation 920428 920428 . . . alleles " C G"; frequencies " 0.404761904761905 0.571428571428571"; depth 42 ; unknown ; N/A GL192357.1 samtools variation 920552 920552 . . . alleles " A C"; frequencies " 0.242424242424242 0.757575757575758"; depth 66 ; unknown ; N/A GL192357.1 samtools variation 920753 920753 . . . alleles " A G"; frequencies " 0.336322869955157 0.663677130044843"; depth 223 ; unknown ; N/A GL192357.1 samtools variation 920792 920792 . . . alleles " A G"; frequencies " 0.353932584269663 0.646067415730337"; depth 178 ; unknown ; N/A GL192357.1 samtools variation 921773 921773 . . . alleles " C T"; frequencies " 0.311258278145695 0.688741721854305"; depth 151 ; unknown ; N/A GL192357.1 samtools variation 922211 922211 . . . alleles " T C"; frequencies " 0.52258064516129 0.47741935483871"; depth 155 ; unknown ; N/A GL192357.1 samtools variation 922268 922268 . . . alleles " C A"; frequencies " 0.287037037037037 0.712962962962963"; depth 108 ; unknown ; N/A GL192357.1 samtools variation 922521 922521 . . . alleles " T A"; frequencies " 0.354838709677419 0.645161290322581"; depth 62 ; unknown ; N/A GL192357.1 samtools variation 922677 922677 . . . alleles " C T"; frequencies " 0.388888888888889 0.601851851851852"; depth 108 ; unknown ; N/A GL192357.1 samtools variation 922838 922838 . . . alleles " G T"; frequencies " 0.305555555555556 0.694444444444444"; depth 108 ; unknown ; N/A GL192357.1 samtools variation 923120 923120 . . . alleles " G C"; frequencies " 0.650793650793651 0.349206349206349"; depth 63 ; unknown ; N/A GL192357.1 samtools variation 923164 923164 . . . alleles " G A"; frequencies " 0.459459459459459 0.540540540540541"; depth 37 ; unknown ; N/A GL192357.1 samtools variation 923259 923259 . . . alleles " C T"; frequencies " 0.569444444444444 0.430555555555556"; depth 72 ; known ; N/A GL192357.1 samtools variation 923416 923416 . . . alleles " C T"; frequencies " 0.394736842105263 0.605263157894737"; depth 152 ; unknown ; N/A GL192357.1 samtools variation 923417 923417 . . . alleles " C G"; frequencies " 0.386666666666667 0.613333333333333"; depth 150 ; unknown ; N/A GL192357.1 samtools variation 923633 923633 . . . alleles " G A"; frequencies " 0.285046728971963 0.714953271028037"; depth 214 ; unknown ; N/A GL192357.1 samtools variation 948865 948865 . . . alleles " T G"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; known ; non-synonymous GL192357.1 samtools variation 958986 958986 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192357.1 samtools variation 969424 969424 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192357.1 samtools variation 970412 970412 . . . alleles " G A"; frequencies " 0.773584905660377 0.226415094339623"; depth 53 ; unknown ; N/A GL192357.1 samtools variation 970447 970447 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 49 ; unknown ; N/A GL192357.1 samtools variation 970522 970522 . . . alleles " C T"; frequencies " 0.649122807017544 0.350877192982456"; depth 57 ; known ; N/A GL192357.1 samtools variation 971364 971364 . . . alleles " A G"; frequencies " 0.675 0.325"; depth 40 ; unknown ; N/A GL192357.1 samtools variation 971721 971721 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 54 ; unknown ; N/A GL192357.1 samtools variation 973055 973055 . . . alleles " C T"; frequencies " 0.527093596059113 0.472906403940887"; depth 203 ; unknown ; N/A GL192357.1 samtools variation 973256 973256 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 138 ; unknown ; N/A GL192357.1 samtools variation 973983 973983 . . . alleles " T C"; frequencies " 0.47008547008547 0.52991452991453"; depth 117 ; unknown ; N/A GL192357.1 samtools variation 1080056 1080056 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192357.1 samtools variation 1240321 1240321 . . . alleles " A G"; frequencies " 0.323943661971831 0.676056338028169"; depth 213 ; unknown ; N/A GL192357.1 samtools variation 1241517 1241517 . . . alleles " A G"; frequencies " 0.763440860215054 0.236559139784946"; depth 93 ; unknown ; synonymous GL192357.1 samtools variation 1241823 1241823 . . . alleles " C T"; frequencies " 0.62 0.38"; depth 200 ; unknown ; synonymous GL192357.1 samtools variation 1526017 1526017 . . . alleles " A C"; frequencies " 0.476489028213166 0.523510971786834"; depth 319 ; unknown ; synonymous GL192357.1 samtools variation 1528286 1528286 . . . alleles " G A"; frequencies " 0.520435967302452 0.479564032697548"; depth 367 ; unknown ; synonymous GL192357.1 samtools variation 1555329 1555329 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 57 ; unknown ; non-synonymous GL192357.1 samtools variation 1575436 1575436 . . . alleles " G T"; frequencies " 0.712418300653595 0.287581699346405"; depth 153 ; unknown ; N/A GL192357.1 samtools variation 1575731 1575731 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL192357.1 samtools variation 1754150 1754150 . . . alleles " T C"; frequencies " 0.537634408602151 0.462365591397849"; depth 93 ; known ; N/A GL192357.1 samtools variation 1754464 1754464 . . . alleles " G A"; frequencies " 0.691823899371069 0.308176100628931"; depth 159 ; unknown ; N/A GL192357.1 samtools variation 1896820 1896820 . . . alleles " A C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192357.1 samtools variation 1902414 1902414 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192357.1 samtools variation 1930828 1930828 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192357.1 samtools variation 1954338 1954338 . . . alleles " A G"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; synonymous GL192357.1 samtools variation 1954404 1954404 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; synonymous GL192357.1 samtools variation 1959584 1959584 . . . alleles " A C"; frequencies " 0.797101449275362 0.202898550724638"; depth 69 ; unknown ; N/A GL192357.1 samtools variation 1959874 1959874 . . . alleles " C G"; frequencies " 0.533980582524272 0.466019417475728"; depth 206 ; known ; N/A GL192357.1 samtools variation 1979853 1979853 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192357.1 samtools variation 2004586 2004586 . . . alleles " G T"; frequencies " 0.575 0.425"; depth 40 ; known ; N/A GL192357.1 samtools variation 2004604 2004604 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 85 ; unknown ; N/A GL192357.1 samtools variation 2004644 2004644 . . . alleles " G C"; frequencies " 0.486238532110092 0.513761467889908"; depth 109 ; unknown ; N/A GL192357.1 samtools variation 2024364 2024364 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; known ; N/A GL192357.1 samtools variation 2040273 2040273 . . . alleles " G C"; frequencies " 0.491525423728814 0.508474576271186"; depth 59 ; unknown ; N/A GL192357.1 samtools variation 2040349 2040349 . . . alleles " G A"; frequencies " 0.48936170212766 0.51063829787234"; depth 47 ; unknown ; N/A GL192357.1 samtools variation 2040350 2040350 . . . alleles " G T"; frequencies " 0.48936170212766 0.51063829787234"; depth 47 ; unknown ; N/A GL192357.1 samtools variation 2040667 2040667 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192357.1 samtools variation 2040684 2040684 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192357.1 samtools variation 2046942 2046942 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192357.1 samtools variation 2048873 2048873 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192357.1 samtools variation 2081183 2081183 . . . alleles " A C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192357.1 samtools variation 2081369 2081369 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192357.1 samtools variation 2086722 2086722 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192357.1 samtools variation 2087658 2087658 . . . alleles " C T"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192357.1 samtools variation 2087887 2087887 . . . alleles " A G"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192357.1 samtools variation 2088743 2088743 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192357.1 samtools variation 2089199 2089199 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192357.1 samtools variation 2089309 2089309 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192357.1 samtools variation 2090727 2090727 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL192357.1 samtools variation 2091339 2091339 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192357.1 samtools variation 2091810 2091810 . . . alleles " C A"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192357.1 samtools variation 2091980 2091980 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL192357.1 samtools variation 2092056 2092056 . . . alleles " A G"; frequencies " 0.62962962962963 0.37037037037037"; depth 54 ; unknown ; N/A GL192357.1 samtools variation 2092118 2092118 . . . alleles " G T"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; N/A GL192357.1 samtools variation 2092185 2092185 . . . alleles " G A"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL192357.1 samtools variation 2092212 2092212 . . . alleles " T C"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; unknown ; N/A GL192357.1 samtools variation 2092303 2092303 . . . alleles " G A"; frequencies " 0.383333333333333 0.616666666666667"; depth 60 ; unknown ; N/A GL192357.1 samtools variation 2092317 2092317 . . . alleles " A G"; frequencies " 0.702127659574468 0.297872340425532"; depth 47 ; unknown ; N/A GL192357.1 samtools variation 2092524 2092524 . . . alleles " T G"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192357.1 samtools variation 2092574 2092574 . . . alleles " C T"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192357.1 samtools variation 2106159 2106159 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192357.1 samtools variation 2112792 2112792 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; non-synonymous GL192357.1 samtools variation 2114566 2114566 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; synonymous GL192357.1 samtools variation 2114625 2114625 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; non-synonymous GL192357.1 samtools variation 2325880 2325880 . . . alleles " A G"; frequencies " 0.775 0.225"; depth 40 ; unknown ; N/A GL192357.1 samtools variation 2330256 2330256 . . . alleles " T A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192357.1 samtools variation 2331349 2331349 . . . alleles " A G"; frequencies " 0.730769230769231 0.269230769230769"; depth 78 ; unknown ; N/A GL192357.1 samtools variation 2334302 2334302 . . . alleles " A G"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192357.1 samtools variation 2340431 2340431 . . . alleles " C G"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192357.1 samtools variation 2341070 2341070 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192357.1 samtools variation 2346569 2346569 . . . alleles " C T"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; unknown ; N/A GL192357.1 samtools variation 2346648 2346648 . . . alleles " A G"; frequencies " 0.522388059701492 0.477611940298507"; depth 67 ; unknown ; N/A GL192357.1 samtools variation 2346697 2346697 . . . alleles " A G"; frequencies " 0.52 0.48"; depth 50 ; unknown ; N/A GL192357.1 samtools variation 2386181 2386181 . . . alleles " T A"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; non-synonymous GL192357.1 samtools variation 2398275 2398275 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192357.1 samtools variation 2399478 2399478 . . . alleles " T C"; frequencies " 0.606382978723404 0.393617021276596"; depth 94 ; unknown ; non-synonymous GL192357.1 samtools variation 2402801 2402801 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 45 ; unknown ; synonymous GL192357.1 samtools variation 2405111 2405111 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 32 ; unknown ; non-synonymous GL192357.1 samtools variation 2477158 2477158 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192357.1 samtools variation 2480646 2480646 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192357.1 samtools variation 2482584 2482584 . . . alleles " G A"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192357.1 samtools variation 2543175 2543175 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192357.1 samtools variation 2544786 2544786 . . . alleles " C G"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL192357.1 samtools variation 2546322 2546322 . . . alleles " A C"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL192357.1 samtools variation 2546448 2546448 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192357.1 samtools variation 2546723 2546723 . . . alleles " G A"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; known ; N/A GL192357.1 samtools variation 2554202 2554202 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192357.1 samtools variation 2555288 2555288 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192357.1 samtools variation 2555320 2555320 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192357.1 samtools variation 2555669 2555669 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 32 ; known ; N/A GL192357.1 samtools variation 2555766 2555766 . . . alleles " T G"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; known ; N/A GL192357.1 samtools variation 2555853 2555853 . . . alleles " C T"; frequencies " 0.268292682926829 0.731707317073171"; depth 41 ; known ; N/A GL192357.1 samtools variation 2555867 2555867 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 40 ; known ; N/A GL192357.1 samtools variation 2567070 2567070 . . . alleles " C G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192357.1 samtools variation 2722775 2722775 . . . alleles " A G"; frequencies " 0.659090909090909 0.340909090909091"; depth 88 ; unknown ; synonymous GL192357.1 samtools variation 2736879 2736879 . . . alleles " G C"; frequencies " 0.789473684210526 0.210526315789474"; depth 190 ; unknown ; non-synonymous GL192357.1 samtools variation 2760288 2760288 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192357.1 samtools variation 2774284 2774284 . . . alleles " G A"; frequencies " 0.783382789317507 0.216617210682493"; depth 337 ; unknown ; N/A GL192357.1 samtools variation 2792431 2792431 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192357.1 samtools variation 2792741 2792741 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192357.1 samtools variation 2800675 2800675 . . . alleles " C G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; synonymous GL192357.1 samtools variation 2826214 2826214 . . . alleles " A C"; frequencies " 0.260204081632653 0.739795918367347"; depth 196 ; unknown ; N/A GL192357.1 samtools variation 2836194 2836194 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192357.1 samtools variation 2837494 2837494 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192357.1 samtools variation 2837520 2837520 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192357.1 samtools variation 2838359 2838359 . . . alleles " C T"; frequencies " 0.40072202166065 0.592057761732852"; depth 277 ; unknown ; synonymous GL192357.1 samtools variation 2838985 2838985 . . . alleles " A G"; frequencies " 0.406779661016949 0.593220338983051"; depth 118 ; unknown ; N/A GL192357.1 samtools variation 2839064 2839064 . . . alleles " C T"; frequencies " 0.469387755102041 0.530612244897959"; depth 49 ; unknown ; N/A GL192357.1 samtools variation 2948386 2948386 . . . alleles " G A"; frequencies " 0.331658291457286 0.668341708542714"; depth 199 ; unknown ; synonymous GL192357.1 samtools variation 3060162 3060162 . . . alleles " G T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192357.1 samtools variation 3074451 3074451 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL192357.1 samtools variation 3080294 3080294 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192357.1 samtools variation 3080301 3080301 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192357.1 samtools variation 3093207 3093207 . . . alleles " C G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192357.1 samtools variation 3101189 3101189 . . . alleles " T C"; frequencies " 0.290697674418605 0.709302325581395"; depth 86 ; unknown ; N/A GL192357.1 samtools variation 3104677 3104677 . . . alleles " A G"; frequencies " 0.374439461883408 0.625560538116592"; depth 446 ; unknown ; N/A GL192357.1 samtools variation 3118748 3118748 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL192357.1 samtools variation 3129358 3129358 . . . alleles " C T"; frequencies " 0.732484076433121 0.267515923566879"; depth 157 ; unknown ; N/A GL192357.1 samtools variation 3131462 3131462 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192357.1 samtools variation 3180609 3180609 . . . alleles " G A"; frequencies " 0.661111111111111 0.338888888888889"; depth 180 ; unknown ; N/A GL192357.1 samtools variation 3186624 3186624 . . . alleles " G A"; frequencies " 0.729794933655006 0.270205066344994"; depth 829 ; unknown ; synonymous GL192357.1 samtools variation 3194460 3194460 . . . alleles " C A"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL192357.1 samtools variation 3196364 3196364 . . . alleles " T C"; frequencies " 0.771428571428571 0.228571428571429"; depth 105 ; unknown ; N/A GL192357.1 samtools variation 3212375 3212375 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192357.1 samtools variation 3220241 3220241 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192357.1 samtools variation 3294543 3294543 . . . alleles " G C"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; synonymous GL192357.1 samtools variation 3349590 3349590 . . . alleles " G A"; frequencies " 0.776119402985075 0.223880597014925"; depth 268 ; unknown ; N/A GL192357.1 samtools variation 3351044 3351044 . . . alleles " A G"; frequencies " 0.67065868263473 0.329341317365269"; depth 167 ; unknown ; N/A GL192357.1 samtools variation 3352769 3352769 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 209 ; unknown ; N/A GL192357.1 samtools variation 3366544 3366544 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192357.1 samtools variation 3367417 3367417 . . . alleles " T C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192357.1 samtools variation 3372006 3372006 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192357.1 samtools variation 3469721 3469721 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192357.1 samtools variation 3472446 3472446 . . . alleles " T G"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192357.1 samtools variation 3478299 3478299 . . . alleles " T A"; frequencies " 0.625 0.3125"; depth 16 ; unknown ; N/A GL192357.1 samtools variation 3514781 3514781 . . . alleles " G A"; frequencies " 0.641304347826087 0.358695652173913"; depth 184 ; unknown ; synonymous GL192357.1 samtools variation 3515625 3515625 . . . alleles " A G"; frequencies " 0.735632183908046 0.264367816091954"; depth 87 ; unknown ; N/A GL192357.1 samtools variation 3515714 3515714 . . . alleles " T C"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL192357.1 samtools variation 3515748 3515748 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 72 ; unknown ; N/A GL192357.1 samtools variation 3515867 3515867 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; N/A GL192357.1 samtools variation 3515923 3515923 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 63 ; unknown ; N/A GL192357.1 samtools variation 3536141 3536141 . . . alleles " G A"; frequencies " 0.514541387024608 0.485458612975392"; depth 447 ; unknown ; synonymous GL192357.1 samtools variation 3539395 3539395 . . . alleles " G A"; frequencies " 0.492822966507177 0.507177033492823"; depth 627 ; unknown ; non-synonymous GL192357.1 samtools variation 3539765 3539765 . . . alleles " A G"; frequencies " 0.540540540540541 0.459459459459459"; depth 74 ; unknown ; N/A GL192357.1 samtools variation 3541685 3541685 . . . alleles " T C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192357.1 samtools variation 3542836 3542836 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192357.1 samtools variation 3543448 3543448 . . . alleles " T C"; frequencies " 0.529616724738676 0.470383275261324"; depth 287 ; unknown ; synonymous GL192357.1 samtools variation 3544371 3544371 . . . alleles " T C"; frequencies " 0.523809523809524 0.476190476190476"; depth 189 ; unknown ; N/A GL192357.1 samtools variation 3544442 3544442 . . . alleles " G A"; frequencies " 0.606896551724138 0.393103448275862"; depth 145 ; unknown ; N/A GL192357.1 samtools variation 3545101 3545101 . . . alleles " T C"; frequencies " 0.577981651376147 0.422018348623853"; depth 109 ; unknown ; N/A GL192357.1 samtools variation 3545358 3545358 . . . alleles " G C"; frequencies " 0.590361445783133 0.409638554216867"; depth 83 ; unknown ; N/A GL192357.1 samtools variation 3545953 3545953 . . . alleles " G A"; frequencies " 0.602150537634409 0.397849462365591"; depth 186 ; unknown ; N/A GL192357.1 samtools variation 3546395 3546395 . . . alleles " T A"; frequencies " 0.564293304994687 0.435706695005314"; depth 941 ; unknown ; non-synonymous GL192357.1 samtools variation 3546397 3546397 . . . alleles " C T"; frequencies " 0.585129310344828 0.414870689655172"; depth 928 ; unknown ; synonymous GL192357.1 samtools variation 3547314 3547314 . . . alleles " T C"; frequencies " 0.52191235059761 0.47808764940239"; depth 251 ; unknown ; N/A GL192357.1 samtools variation 3547316 3547316 . . . alleles " T C"; frequencies " 0.52755905511811 0.47244094488189"; depth 254 ; unknown ; N/A GL192357.1 samtools variation 3547525 3547525 . . . alleles " T C"; frequencies " 0.552204176334107 0.447022428460944"; depth 1293 ; unknown ; N/A GL192357.1 samtools variation 3547532 3547532 . . . alleles " G A"; frequencies " 0.559729526671675 0.440270473328325"; depth 1331 ; unknown ; N/A GL192357.1 samtools variation 3547868 3547868 . . . alleles " A T"; frequencies " 0.678062678062678 0.321937321937322"; depth 351 ; unknown ; N/A GL192357.1 samtools variation 3548220 3548220 . . . alleles " C T"; frequencies " 0.742574257425743 0.257425742574257"; depth 101 ; unknown ; N/A GL192357.1 samtools variation 3548241 3548241 . . . alleles " C T"; frequencies " 0.612403100775194 0.387596899224806"; depth 129 ; unknown ; N/A GL192357.1 samtools variation 3548410 3548410 . . . alleles " C T"; frequencies " 0.612903225806452 0.387096774193548"; depth 155 ; unknown ; N/A GL192357.1 samtools variation 3548502 3548502 . . . alleles " C T"; frequencies " 0.528735632183908 0.471264367816092"; depth 87 ; unknown ; N/A GL192357.1 samtools variation 3549006 3549006 . . . alleles " A C"; frequencies " 0.372239747634069 0.627760252365931"; depth 317 ; unknown ; N/A GL192357.1 samtools variation 3549386 3549386 . . . alleles " T G"; frequencies " 0.674603174603175 0.325396825396825"; depth 126 ; unknown ; N/A GL192357.1 samtools variation 3550051 3550051 . . . alleles " A G"; frequencies " 0.693333333333333 0.306666666666667"; depth 75 ; unknown ; N/A GL192357.1 samtools variation 3550058 3550058 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 81 ; unknown ; N/A GL192357.1 samtools variation 3550197 3550197 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 46 ; unknown ; N/A GL192357.1 samtools variation 3550281 3550281 . . . alleles " T G"; frequencies " 0.213114754098361 0.786885245901639"; depth 61 ; unknown ; N/A GL192357.1 samtools variation 3550305 3550305 . . . alleles " A G"; frequencies " 0.418604651162791 0.581395348837209"; depth 43 ; unknown ; N/A GL192357.1 samtools variation 3550521 3550521 . . . alleles " G A"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; unknown ; N/A GL192357.1 samtools variation 3550809 3550809 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192357.1 samtools variation 3551522 3551522 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 30 ; unknown ; N/A GL192357.1 samtools variation 3551929 3551929 . . . alleles " C T"; frequencies " 0.532608695652174 0.467391304347826"; depth 92 ; unknown ; N/A GL192357.1 samtools variation 3552399 3552399 . . . alleles " A G"; frequencies " 0.724770642201835 0.275229357798165"; depth 109 ; unknown ; N/A GL192357.1 samtools variation 3552848 3552848 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192357.1 samtools variation 3554232 3554232 . . . alleles " A G"; frequencies " 0.479674796747967 0.520325203252033"; depth 123 ; unknown ; synonymous GL192357.1 samtools variation 3555352 3555352 . . . alleles " C A"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192357.1 samtools variation 3555409 3555409 . . . alleles " C A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192357.1 samtools variation 3555482 3555482 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192357.1 samtools variation 3559069 3559069 . . . alleles " A G"; frequencies " 0.393700787401575 0.606299212598425"; depth 127 ; unknown ; synonymous GL192357.1 samtools variation 3608270 3608270 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; non-synonymous GL192357.1 samtools variation 3612776 3612776 . . . alleles " A G"; frequencies " 0.411149825783972 0.588850174216028"; depth 287 ; unknown ; N/A GL192357.1 samtools variation 3613938 3613938 . . . alleles " G A"; frequencies " 0.356521739130435 0.643478260869565"; depth 115 ; unknown ; N/A GL192357.1 samtools variation 3614138 3614138 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL192357.1 samtools variation 3614714 3614714 . . . alleles " G T"; frequencies " 0.369047619047619 0.630952380952381"; depth 84 ; unknown ; N/A GL192357.1 samtools variation 3617755 3617755 . . . alleles " G C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192357.1 samtools variation 3709561 3709561 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192357.1 samtools variation 3723946 3723946 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL192357.1 samtools variation 3730655 3730655 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192357.1 samtools variation 3791600 3791600 . . . alleles " G A"; frequencies " 0.660660660660661 0.339339339339339"; depth 333 ; unknown ; N/A GL192357.1 samtools variation 3832604 3832604 . . . alleles " G T"; frequencies " 0.55 0.45"; depth 60 ; unknown ; N/A GL192357.1 samtools variation 3843037 3843037 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192357.1 samtools variation 3847441 3847441 . . . alleles " G A"; frequencies " 0.671428571428571 0.328571428571429"; depth 70 ; unknown ; N/A GL192357.1 samtools variation 3847611 3847611 . . . alleles " A G"; frequencies " 0.209016393442623 0.790983606557377"; depth 244 ; unknown ; N/A GL192357.1 samtools variation 3847841 3847841 . . . alleles " T C"; frequencies " 0.513513513513513 0.486486486486487"; depth 111 ; unknown ; N/A GL192357.1 samtools variation 3847977 3847977 . . . alleles " G A"; frequencies " 0.698224852071006 0.301775147928994"; depth 169 ; unknown ; N/A GL192357.1 samtools variation 3848114 3848114 . . . alleles " A G"; frequencies " 0.641025641025641 0.358974358974359"; depth 195 ; unknown ; N/A GL192357.1 samtools variation 3848739 3848739 . . . alleles " C T"; frequencies " 0.558823529411765 0.441176470588235"; depth 68 ; unknown ; N/A GL192357.1 samtools variation 3973787 3973787 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192357.1 samtools variation 3986863 3986863 . . . alleles " A G"; frequencies " 0.652777777777778 0.347222222222222"; depth 72 ; unknown ; synonymous GL192357.1 samtools variation 3991482 3991482 . . . alleles " C T"; frequencies " 0.342105263157895 0.657894736842105"; depth 38 ; unknown ; synonymous GL192357.1 samtools variation 3993023 3993023 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 46 ; unknown ; non-synonymous GL192357.1 samtools variation 4006497 4006497 . . . alleles " A G"; frequencies " 0.586206896551724 0.413793103448276"; depth 58 ; unknown ; N/A GL192357.1 samtools variation 4007081 4007081 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; N/A GL192357.1 samtools variation 4007088 4007088 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL192357.1 samtools variation 4007190 4007190 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 85 ; unknown ; N/A GL192357.1 samtools variation 4007351 4007351 . . . alleles " A C"; frequencies " 0.479166666666667 0.520833333333333"; depth 96 ; unknown ; N/A GL192357.1 samtools variation 4014919 4014919 . . . alleles " G T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192357.1 samtools variation 4014935 4014935 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192357.1 samtools variation 4016189 4016189 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192357.1 samtools variation 4037168 4037168 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; synonymous GL192357.1 samtools variation 4038031 4038031 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; known ; synonymous GL192357.1 samtools variation 4040178 4040178 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 26 ; known ; N/A GL192357.1 samtools variation 4040538 4040538 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL192357.1 samtools variation 4040675 4040675 . . . alleles " G T"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; N/A GL192357.1 samtools variation 4040913 4040913 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192357.1 samtools variation 4069426 4069426 . . . alleles " G C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192357.1 samtools variation 4070192 4070192 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192357.1 samtools variation 4071439 4071439 . . . alleles " T C"; frequencies " 0.76510067114094 0.23489932885906"; depth 149 ; unknown ; N/A GL192357.1 samtools variation 4119237 4119237 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192357.1 samtools variation 4149479 4149479 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192357.1 samtools variation 4154710 4154710 . . . alleles " A G"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; synonymous GL192357.1 samtools variation 4303493 4303493 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192357.1 samtools variation 4359267 4359267 . . . alleles " C A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192357.1 samtools variation 4359346 4359346 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192357.1 samtools variation 4359347 4359347 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192357.1 samtools variation 4359413 4359413 . . . alleles " T A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192357.1 samtools variation 4359414 4359414 . . . alleles " A C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192357.1 samtools variation 4421023 4421023 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192357.1 samtools variation 4426056 4426056 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192357.1 samtools variation 4444679 4444679 . . . alleles " A G"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192357.1 samtools variation 4478878 4478878 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192357.1 samtools variation 4486831 4486831 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192357.1 samtools variation 4492741 4492741 . . . alleles " A C"; frequencies " 0.728291316526611 0.271708683473389"; depth 357 ; known ; N/A GL192357.1 samtools variation 4493018 4493018 . . . alleles " C T"; frequencies " 0.673202614379085 0.326797385620915"; depth 153 ; known ; N/A GL192358.1 samtools variation 2257 2257 . . . alleles " T A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; non-synonymous GL192358.1 samtools variation 15176 15176 . . . alleles " T C"; frequencies " 0.75 0.23876404494382"; depth 356 ; known ; synonymous GL192358.1 samtools variation 16558 16558 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 57 ; unknown ; N/A GL192358.1 samtools variation 18531 18531 . . . alleles " G C"; frequencies " 0.206611570247934 0.793388429752066"; depth 121 ; known ; non-synonymous GL192358.1 samtools variation 21142 21142 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192358.1 samtools variation 21151 21151 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192358.1 samtools variation 25774 25774 . . . alleles " A G"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL192358.1 samtools variation 26538 26538 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192358.1 samtools variation 26585 26585 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192358.1 samtools variation 27885 27885 . . . alleles " A G"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; unknown ; N/A GL192358.1 samtools variation 27902 27902 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 30 ; unknown ; N/A GL192358.1 samtools variation 28101 28101 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192358.1 samtools variation 30296 30296 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192358.1 samtools variation 30391 30391 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192358.1 samtools variation 30705 30705 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192358.1 samtools variation 31038 31038 . . . alleles " T C"; frequencies " 0.66304347826087 0.33695652173913"; depth 276 ; unknown ; synonymous GL192358.1 samtools variation 31994 31994 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192358.1 samtools variation 32352 32352 . . . alleles " C G"; frequencies " 0.640718562874252 0.359281437125749"; depth 167 ; unknown ; N/A GL192358.1 samtools variation 64763 64763 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 32 ; unknown ; N/A GL192358.1 samtools variation 64946 64946 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192358.1 samtools variation 66012 66012 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192358.1 samtools variation 68646 68646 . . . alleles " C G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192358.1 samtools variation 70324 70324 . . . alleles " G A"; frequencies " 0.207317073170732 0.792682926829268"; depth 82 ; known ; N/A GL192358.1 samtools variation 74642 74642 . . . alleles " C T"; frequencies " 0.721649484536082 0.278350515463918"; depth 194 ; unknown ; N/A GL192358.1 samtools variation 78476 78476 . . . alleles " G A"; frequencies " 0.760180995475113 0.239819004524887"; depth 221 ; unknown ; N/A GL192358.1 samtools variation 78898 78898 . . . alleles " C A"; frequencies " 0.619047619047619 0.380952380952381"; depth 63 ; unknown ; N/A GL192358.1 samtools variation 117578 117578 . . . alleles " G C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192358.1 samtools variation 634790 634790 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192358.1 samtools variation 718059 718059 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; synonymous GL192358.1 samtools variation 723942 723942 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192358.1 samtools variation 724000 724000 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192358.1 samtools variation 724642 724642 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192358.1 samtools variation 724706 724706 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192358.1 samtools variation 724900 724900 . . . alleles " C G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192358.1 samtools variation 725271 725271 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192358.1 samtools variation 809949 809949 . . . alleles " C T"; frequencies " 0.342857142857143 0.657142857142857"; depth 70 ; known ; synonymous GL192358.1 samtools variation 1025431 1025431 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; non-synonymous GL192358.1 samtools variation 1029976 1029976 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192358.1 samtools variation 1030276 1030276 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL192358.1 samtools variation 1031343 1031343 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192358.1 samtools variation 1042216 1042216 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192358.1 samtools variation 1086757 1086757 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192358.1 samtools variation 1092164 1092164 . . . alleles " C T"; frequencies " 0.456521739130435 0.543478260869565"; depth 46 ; unknown ; N/A GL192358.1 samtools variation 2138353 2138353 . . . alleles " G A"; frequencies " 0.396984924623116 0.603015075376884"; depth 199 ; known ; N/A GL192358.1 samtools variation 2138496 2138496 . . . alleles " A G"; frequencies " 0.349693251533742 0.650306748466258"; depth 163 ; known ; N/A GL192358.1 samtools variation 2138958 2138958 . . . alleles " A G"; frequencies " 0.284090909090909 0.715909090909091"; depth 88 ; known ; N/A GL192358.1 samtools variation 2139518 2139518 . . . alleles " A G"; frequencies " 0.663793103448276 0.336206896551724"; depth 116 ; known ; N/A GL192358.1 samtools variation 2139897 2139897 . . . alleles " G C"; frequencies " 0.685057471264368 0.314942528735632"; depth 435 ; known ; non-synonymous GL192358.1 samtools variation 2141909 2141909 . . . alleles " T C"; frequencies " 0.569230769230769 0.430769230769231"; depth 65 ; known ; N/A GL192358.1 samtools variation 2143003 2143003 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; N/A GL192358.1 samtools variation 2143800 2143800 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192358.1 samtools variation 2144073 2144073 . . . alleles " G A"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; known ; N/A GL192358.1 samtools variation 2148530 2148530 . . . alleles " T C"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL192358.1 samtools variation 2150087 2150087 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192358.1 samtools variation 2229865 2229865 . . . alleles " C A"; frequencies " 0.35719298245614 0.64280701754386"; depth 1425 ; known ; non-synonymous GL192358.1 samtools variation 2252826 2252826 . . . alleles " T C"; frequencies " 0.707317073170732 0.292682926829268"; depth 123 ; known ; N/A GL192358.1 samtools variation 2309161 2309161 . . . alleles " G A"; frequencies " 0.69 0.31"; depth 100 ; unknown ; N/A GL192358.1 samtools variation 2338394 2338394 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 54 ; unknown ; N/A GL192358.1 samtools variation 2339663 2339663 . . . alleles " G A"; frequencies " 0.572815533980582 0.427184466019417"; depth 103 ; unknown ; N/A GL192358.1 samtools variation 2339762 2339762 . . . alleles " C A"; frequencies " 0.540983606557377 0.459016393442623"; depth 61 ; unknown ; N/A GL192358.1 samtools variation 2345949 2345949 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; non-synonymous GL192358.1 samtools variation 2345981 2345981 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; non-synonymous GL192358.1 samtools variation 2348703 2348703 . . . alleles " T G"; frequencies " 0.269565217391304 0.730434782608696"; depth 115 ; unknown ; synonymous GL192358.1 samtools variation 2439517 2439517 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192358.1 samtools variation 2785885 2785885 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192358.1 samtools variation 2804293 2804293 . . . alleles " C T"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL192358.1 samtools variation 2804386 2804386 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL192358.1 samtools variation 2804395 2804395 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; known ; N/A GL192358.1 samtools variation 2805089 2805089 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192358.1 samtools variation 2805091 2805091 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192358.1 samtools variation 2807880 2807880 . . . alleles " G A"; frequencies " 0.371320037986705 0.628679962013295"; depth 1053 ; known ; N/A GL192358.1 samtools variation 2810676 2810676 . . . alleles " C T"; frequencies " 0.775280898876405 0.224719101123595"; depth 89 ; known ; N/A GL192358.1 samtools variation 2810681 2810681 . . . alleles " T C"; frequencies " 0.765432098765432 0.234567901234568"; depth 81 ; known ; N/A GL192358.1 samtools variation 2810748 2810748 . . . alleles " C T"; frequencies " 0.244186046511628 0.755813953488372"; depth 86 ; unknown ; N/A GL192358.1 samtools variation 2810751 2810751 . . . alleles " T C"; frequencies " 0.244186046511628 0.755813953488372"; depth 86 ; unknown ; N/A GL192358.1 samtools variation 2810894 2810894 . . . alleles " A G"; frequencies " 0.257668711656442 0.742331288343558"; depth 163 ; known ; N/A GL192358.1 samtools variation 2811913 2811913 . . . alleles " T C"; frequencies " 0.212053571428571 0.787946428571429"; depth 448 ; known ; N/A GL192358.1 samtools variation 2815102 2815102 . . . alleles " C A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192358.1 samtools variation 2815722 2815722 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192358.1 samtools variation 2815858 2815858 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192358.1 samtools variation 2817139 2817139 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192358.1 samtools variation 2817180 2817180 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192358.1 samtools variation 2817211 2817211 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL192358.1 samtools variation 2817399 2817399 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192358.1 samtools variation 2821816 2821816 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192358.1 samtools variation 2821848 2821848 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192358.1 samtools variation 2822475 2822475 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192358.1 samtools variation 2828943 2828943 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192358.1 samtools variation 2830663 2830663 . . . alleles " A G"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; known ; N/A GL192358.1 samtools variation 2837892 2837892 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192358.1 samtools variation 2842851 2842851 . . . alleles " G T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192358.1 samtools variation 2842868 2842868 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192358.1 samtools variation 2846178 2846178 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192358.1 samtools variation 2847034 2847034 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192358.1 samtools variation 2858820 2858820 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192358.1 samtools variation 2859900 2859900 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192358.1 samtools variation 2887277 2887277 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192358.1 samtools variation 2887305 2887305 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192358.1 samtools variation 2889031 2889031 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192358.1 samtools variation 2889997 2889997 . . . alleles " T A"; frequencies " 0.2 0.8"; depth 30 ; known ; N/A GL192358.1 samtools variation 2891661 2891661 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192358.1 samtools variation 2893148 2893148 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192358.1 samtools variation 2894155 2894155 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 57 ; known ; N/A GL192358.1 samtools variation 2896121 2896121 . . . alleles " T G"; frequencies " 0.352941176470588 0.647058823529412"; depth 34 ; known ; N/A GL192358.1 samtools variation 2896196 2896196 . . . alleles " A G"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; unknown ; N/A GL192358.1 samtools variation 2899757 2899757 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 80 ; unknown ; N/A GL192358.1 samtools variation 2900249 2900249 . . . alleles " A G"; frequencies " 0.758064516129032 0.241935483870968"; depth 62 ; known ; N/A GL192358.1 samtools variation 2903120 2903120 . . . alleles " C G"; frequencies " 0.622448979591837 0.377551020408163"; depth 98 ; known ; N/A GL192358.1 samtools variation 2903718 2903718 . . . alleles " T C"; frequencies " 0.784615384615385 0.215384615384615"; depth 65 ; known ; N/A GL192358.1 samtools variation 2903916 2903916 . . . alleles " G A"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; known ; N/A GL192358.1 samtools variation 2904757 2904757 . . . alleles " T C"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; known ; N/A GL192358.1 samtools variation 2911580 2911580 . . . alleles " T G"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL192358.1 samtools variation 2966012 2966012 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192358.1 samtools variation 2976540 2976540 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 171 ; unknown ; synonymous GL192358.1 samtools variation 3003655 3003655 . . . alleles " G A"; frequencies " 0.327586206896552 0.672413793103448"; depth 174 ; unknown ; synonymous GL192358.1 samtools variation 3053932 3053932 . . . alleles " G C"; frequencies " 0.516666666666667 0.483333333333333"; depth 60 ; known ; N/A GL192358.1 samtools variation 3054509 3054509 . . . alleles " C A"; frequencies " 0.537142857142857 0.462857142857143"; depth 175 ; known ; synonymous GL192358.1 samtools variation 3064283 3064283 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192358.1 samtools variation 3081371 3081371 . . . alleles " T C"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; known ; synonymous GL192358.1 samtools variation 3081812 3081812 . . . alleles " A G"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; known ; synonymous GL192358.1 samtools variation 3082133 3082133 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; synonymous GL192358.1 samtools variation 3144120 3144120 . . . alleles " G A"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; unknown ; N/A GL192358.1 samtools variation 3144638 3144638 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192358.1 samtools variation 3147452 3147452 . . . alleles " C T"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL192358.1 samtools variation 3147478 3147478 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 36 ; unknown ; N/A GL192358.1 samtools variation 3147575 3147575 . . . alleles " G A"; frequencies " 0.377049180327869 0.622950819672131"; depth 61 ; unknown ; N/A GL192358.1 samtools variation 3148063 3148063 . . . alleles " A T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192358.1 samtools variation 3148562 3148562 . . . alleles " G A"; frequencies " 0.761006289308176 0.238993710691824"; depth 159 ; known ; N/A GL192358.1 samtools variation 3148642 3148642 . . . alleles " A G"; frequencies " 0.30625 0.69375"; depth 160 ; unknown ; synonymous GL192358.1 samtools variation 3148714 3148714 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 238 ; unknown ; synonymous GL192358.1 samtools variation 3148921 3148921 . . . alleles " G A"; frequencies " 0.398305084745763 0.601694915254237"; depth 118 ; unknown ; synonymous GL192358.1 samtools variation 3149254 3149254 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 40 ; unknown ; N/A GL192358.1 samtools variation 3149337 3149337 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL192358.1 samtools variation 3149466 3149466 . . . alleles " G A"; frequencies " 0.324324324324324 0.675675675675676"; depth 37 ; unknown ; N/A GL192358.1 samtools variation 3149919 3149919 . . . alleles " A G"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192358.1 samtools variation 3150389 3150389 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192358.1 samtools variation 3150468 3150468 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192358.1 samtools variation 3150502 3150502 . . . alleles " T G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192358.1 samtools variation 3150537 3150537 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192358.1 samtools variation 3150593 3150593 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192358.1 samtools variation 3150796 3150796 . . . alleles " G C"; frequencies " 0.295454545454545 0.704545454545455"; depth 44 ; unknown ; N/A GL192358.1 samtools variation 3150958 3150958 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 44 ; unknown ; N/A GL192358.1 samtools variation 3152065 3152065 . . . alleles " C A"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; unknown ; N/A GL192358.1 samtools variation 3152272 3152272 . . . alleles " G A"; frequencies " 0.276595744680851 0.723404255319149"; depth 47 ; unknown ; N/A GL192358.1 samtools variation 3152805 3152805 . . . alleles " G A"; frequencies " 0.289473684210526 0.710526315789474"; depth 38 ; unknown ; N/A GL192358.1 samtools variation 3152868 3152868 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 52 ; known ; N/A GL192358.1 samtools variation 3153009 3153009 . . . alleles " T C"; frequencies " 0.691780821917808 0.308219178082192"; depth 146 ; known ; synonymous GL192358.1 samtools variation 3153204 3153204 . . . alleles " A C"; frequencies " 0.568421052631579 0.431578947368421"; depth 95 ; known ; synonymous GL192358.1 samtools variation 3153966 3153966 . . . alleles " G C"; frequencies " 0.542372881355932 0.457627118644068"; depth 59 ; unknown ; synonymous GL192358.1 samtools variation 3156301 3156301 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192358.1 samtools variation 3156328 3156328 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192358.1 samtools variation 3191338 3191338 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192358.1 samtools variation 3191392 3191392 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192358.1 samtools variation 3194784 3194784 . . . alleles " T G"; frequencies " 0.338983050847458 0.661016949152542"; depth 59 ; unknown ; N/A GL192358.1 samtools variation 3194817 3194817 . . . alleles " T A"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; unknown ; N/A GL192358.1 samtools variation 3197959 3197959 . . . alleles " C T"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; unknown ; N/A GL192358.1 samtools variation 3198328 3198328 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192358.1 samtools variation 3198721 3198721 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192358.1 samtools variation 3200205 3200205 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192358.1 samtools variation 3200366 3200366 . . . alleles " G A"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL192358.1 samtools variation 3200406 3200406 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192358.1 samtools variation 3200984 3200984 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192358.1 samtools variation 3201304 3201304 . . . alleles " C G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192358.1 samtools variation 3201316 3201316 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192358.1 samtools variation 3202453 3202453 . . . alleles " C T"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192358.1 samtools variation 3203249 3203249 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 25 ; unknown ; N/A GL192358.1 samtools variation 3204070 3204070 . . . alleles " C T"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; N/A GL192358.1 samtools variation 3204333 3204333 . . . alleles " A G"; frequencies " 0.342105263157895 0.657894736842105"; depth 38 ; unknown ; N/A GL192358.1 samtools variation 3204416 3204416 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL192358.1 samtools variation 3204442 3204442 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL192358.1 samtools variation 3204609 3204609 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192358.1 samtools variation 3204650 3204650 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; N/A GL192358.1 samtools variation 3204730 3204730 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192358.1 samtools variation 3204803 3204803 . . . alleles " A C"; frequencies " 0.722222222222222 0.222222222222222"; depth 18 ; unknown ; N/A GL192358.1 samtools variation 3205881 3205881 . . . alleles " G A"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; unknown ; N/A GL192358.1 samtools variation 3207144 3207144 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192358.1 samtools variation 3208953 3208953 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192358.1 samtools variation 3209358 3209358 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; N/A GL192358.1 samtools variation 3209407 3209407 . . . alleles " C T"; frequencies " 0.409090909090909 0.590909090909091"; depth 44 ; unknown ; N/A GL192358.1 samtools variation 3209577 3209577 . . . alleles " C T"; frequencies " 0.452380952380952 0.547619047619048"; depth 42 ; unknown ; N/A GL192358.1 samtools variation 3210024 3210024 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192358.1 samtools variation 3210333 3210333 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 48 ; unknown ; N/A GL192358.1 samtools variation 3210409 3210409 . . . alleles " C T"; frequencies " 0.655737704918033 0.344262295081967"; depth 61 ; unknown ; N/A GL192358.1 samtools variation 3210626 3210626 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL192358.1 samtools variation 3210733 3210733 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 65 ; unknown ; N/A GL192358.1 samtools variation 3210837 3210837 . . . alleles " G T"; frequencies " 0.470588235294118 0.529411764705882"; depth 102 ; unknown ; N/A GL192358.1 samtools variation 3211618 3211618 . . . alleles " C T"; frequencies " 0.716049382716049 0.283950617283951"; depth 81 ; unknown ; N/A GL192358.1 samtools variation 3211620 3211620 . . . alleles " G A"; frequencies " 0.630952380952381 0.369047619047619"; depth 84 ; unknown ; N/A GL192358.1 samtools variation 3211696 3211696 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL192358.1 samtools variation 3212087 3212087 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192358.1 samtools variation 3213111 3213111 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192358.1 samtools variation 3213130 3213130 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192358.1 samtools variation 3213145 3213145 . . . alleles " C A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192358.1 samtools variation 3213162 3213162 . . . alleles " G C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192358.1 samtools variation 3213361 3213361 . . . alleles " T C"; frequencies " 0.377049180327869 0.622950819672131"; depth 61 ; unknown ; N/A GL192358.1 samtools variation 3213875 3213875 . . . alleles " G A"; frequencies " 0.634920634920635 0.365079365079365"; depth 63 ; unknown ; N/A GL192358.1 samtools variation 3213919 3213919 . . . alleles " G A"; frequencies " 0.509090909090909 0.490909090909091"; depth 55 ; unknown ; N/A GL192358.1 samtools variation 3213977 3213977 . . . alleles " C T"; frequencies " 0.557142857142857 0.442857142857143"; depth 70 ; unknown ; N/A GL192358.1 samtools variation 3214090 3214090 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL192358.1 samtools variation 3214254 3214254 . . . alleles " A T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192358.1 samtools variation 3214272 3214272 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192358.1 samtools variation 3214381 3214381 . . . alleles " C G"; frequencies " 0.454545454545455 0.545454545454545"; depth 55 ; unknown ; N/A GL192358.1 samtools variation 3214493 3214493 . . . alleles " T C"; frequencies " 0.477272727272727 0.522727272727273"; depth 44 ; unknown ; N/A GL192358.1 samtools variation 3214494 3214494 . . . alleles " G A"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; unknown ; N/A GL192358.1 samtools variation 3214761 3214761 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 63 ; unknown ; N/A GL192358.1 samtools variation 3214811 3214811 . . . alleles " G T"; frequencies " 0.522222222222222 0.477777777777778"; depth 90 ; unknown ; N/A GL192358.1 samtools variation 3215766 3215766 . . . alleles " T C"; frequencies " 0.564516129032258 0.435483870967742"; depth 62 ; unknown ; N/A GL192358.1 samtools variation 3215864 3215864 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 76 ; unknown ; N/A GL192358.1 samtools variation 3216939 3216939 . . . alleles " C T"; frequencies " 0.403846153846154 0.596153846153846"; depth 52 ; unknown ; N/A GL192358.1 samtools variation 3219148 3219148 . . . alleles " G A"; frequencies " 0.582278481012658 0.417721518987342"; depth 79 ; unknown ; N/A GL192358.1 samtools variation 3220126 3220126 . . . alleles " C T"; frequencies " 0.247524752475248 0.752475247524752"; depth 101 ; unknown ; N/A GL192358.1 samtools variation 3220272 3220272 . . . alleles " A G"; frequencies " 0.426229508196721 0.573770491803279"; depth 61 ; unknown ; N/A GL192358.1 samtools variation 3220457 3220457 . . . alleles " G C"; frequencies " 0.321739130434783 0.678260869565217"; depth 115 ; unknown ; N/A GL192358.1 samtools variation 3222267 3222267 . . . alleles " T C"; frequencies " 0.208333333333333 0.791666666666667"; depth 48 ; unknown ; N/A GL192358.1 samtools variation 3223438 3223438 . . . alleles " C T"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; unknown ; N/A GL192358.1 samtools variation 3225129 3225129 . . . alleles " A G"; frequencies " 0.682944090587403 0.317055909412597"; depth 1413 ; unknown ; N/A GL192358.1 samtools variation 3225170 3225170 . . . alleles " C T"; frequencies " 0.380038387715931 0.619961612284069"; depth 1563 ; unknown ; N/A GL192358.1 samtools variation 3226956 3226956 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192358.1 samtools variation 3300845 3300845 . . . alleles " A G"; frequencies " 0.412844036697248 0.587155963302752"; depth 109 ; unknown ; N/A GL192359.1 samtools variation 882312 882312 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; unknown ; N/A GL192359.1 samtools variation 925945 925945 . . . alleles " A G"; frequencies " 0.340425531914894 0.659574468085106"; depth 47 ; unknown ; N/A GL192359.1 samtools variation 926068 926068 . . . alleles " C T"; frequencies " 0.734375 0.265625"; depth 64 ; known ; N/A GL192359.1 samtools variation 927310 927310 . . . alleles " A T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192359.1 samtools variation 1048093 1048093 . . . alleles " A C"; frequencies " 0.565217391304348 0.41304347826087"; depth 46 ; unknown ; N/A GL192359.1 samtools variation 1058336 1058336 . . . alleles " C T"; frequencies " 0.650793650793651 0.349206349206349"; depth 63 ; unknown ; N/A GL192359.1 samtools variation 1411253 1411253 . . . alleles " A T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192359.1 samtools variation 1413052 1413052 . . . alleles " A C"; frequencies " 0.340425531914894 0.659574468085106"; depth 47 ; unknown ; N/A GL192359.1 samtools variation 1415334 1415334 . . . alleles " G A"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192359.1 samtools variation 1416747 1416747 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192359.1 samtools variation 1417279 1417279 . . . alleles " A C"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL192359.1 samtools variation 1418756 1418756 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192359.1 samtools variation 1419182 1419182 . . . alleles " G C"; frequencies " 0.408163265306122 0.591836734693878"; depth 49 ; unknown ; N/A GL192359.1 samtools variation 1419801 1419801 . . . alleles " C T"; frequencies " 0.508196721311475 0.491803278688525"; depth 61 ; unknown ; N/A GL192359.1 samtools variation 1421438 1421438 . . . alleles " G A"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; unknown ; N/A GL192359.1 samtools variation 1421964 1421964 . . . alleles " C A"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192359.1 samtools variation 1421981 1421981 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192359.1 samtools variation 1422250 1422250 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192359.1 samtools variation 1423670 1423670 . . . alleles " G A"; frequencies " 0.513513513513513 0.486486486486487"; depth 37 ; unknown ; N/A GL192359.1 samtools variation 1424354 1424354 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192359.1 samtools variation 1424978 1424978 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192359.1 samtools variation 1426236 1426236 . . . alleles " C G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192359.1 samtools variation 1426287 1426287 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192359.1 samtools variation 1429720 1429720 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192359.1 samtools variation 1430614 1430614 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192359.1 samtools variation 1431756 1431756 . . . alleles " G T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192359.1 samtools variation 1432995 1432995 . . . alleles " A G"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL192359.1 samtools variation 1438721 1438721 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192359.1 samtools variation 1438749 1438749 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192359.1 samtools variation 1442225 1442225 . . . alleles " A T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192359.1 samtools variation 1447537 1447537 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192359.1 samtools variation 1451295 1451295 . . . alleles " T C"; frequencies " 0.462311557788945 0.537688442211055"; depth 199 ; unknown ; N/A GL192359.1 samtools variation 1452146 1452146 . . . alleles " C G"; frequencies " 0.768421052631579 0.231578947368421"; depth 95 ; unknown ; N/A GL192359.1 samtools variation 1456019 1456019 . . . alleles " G A"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL192359.1 samtools variation 1507313 1507313 . . . alleles " T C"; frequencies " 0.326923076923077 0.673076923076923"; depth 208 ; unknown ; synonymous GL192359.1 samtools variation 1507580 1507580 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192359.1 samtools variation 1513825 1513825 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192359.1 samtools variation 1513827 1513827 . . . alleles " T A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192359.1 samtools variation 1640882 1640882 . . . alleles " T C"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192359.1 samtools variation 1642250 1642250 . . . alleles " T G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192359.1 samtools variation 1698933 1698933 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192359.1 samtools variation 1704014 1704014 . . . alleles " G A"; frequencies " 0.710144927536232 0.289855072463768"; depth 69 ; unknown ; N/A GL192359.1 samtools variation 1704212 1704212 . . . alleles " G A"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; non-synonymous GL192359.1 samtools variation 1710650 1710650 . . . alleles " T A"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; non-synonymous GL192359.1 samtools variation 1713288 1713288 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; synonymous GL192359.1 samtools variation 1720605 1720605 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 33 ; unknown ; synonymous GL192359.1 samtools variation 1728221 1728221 . . . alleles " T G"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; non-synonymous GL192359.1 samtools variation 1762506 1762506 . . . alleles " G C"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; unknown ; N/A GL192359.1 samtools variation 1763110 1763110 . . . alleles " G A"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL192359.1 samtools variation 1763156 1763156 . . . alleles " C A"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL192359.1 samtools variation 1764467 1764467 . . . alleles " C G"; frequencies " 0.775862068965517 0.224137931034483"; depth 58 ; unknown ; synonymous GL192359.1 samtools variation 1764470 1764470 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; unknown ; synonymous GL192359.1 samtools variation 1766324 1766324 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192359.1 samtools variation 1766784 1766784 . . . alleles " A C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192359.1 samtools variation 1768185 1768185 . . . alleles " T C"; frequencies " 0.388451443569554 0.611548556430446"; depth 381 ; unknown ; synonymous GL192359.1 samtools variation 1768480 1768480 . . . alleles " T G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192359.1 samtools variation 1768493 1768493 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192359.1 samtools variation 1768578 1768578 . . . alleles " T G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192359.1 samtools variation 1894115 1894115 . . . alleles " C T"; frequencies " 0.608108108108108 0.391891891891892"; depth 74 ; unknown ; synonymous GL192359.1 samtools variation 1896182 1896182 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 49 ; unknown ; N/A GL192359.1 samtools variation 1897514 1897514 . . . alleles " T C"; frequencies " 0.779816513761468 0.220183486238532"; depth 109 ; unknown ; N/A GL192359.1 samtools variation 1965210 1965210 . . . alleles " A C"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL192359.1 samtools variation 1969493 1969493 . . . alleles " T G"; frequencies " 0.264705882352941 0.735294117647059"; depth 34 ; unknown ; N/A GL192359.1 samtools variation 1972008 1972008 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192359.1 samtools variation 1991280 1991280 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; synonymous GL192359.1 samtools variation 1999009 1999009 . . . alleles " G A"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; non-synonymous GL192359.1 samtools variation 2012047 2012047 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; synonymous GL192359.1 samtools variation 2033712 2033712 . . . alleles " T C"; frequencies " 0.783505154639175 0.216494845360825"; depth 97 ; unknown ; N/A GL192359.1 samtools variation 2034597 2034597 . . . alleles " C T"; frequencies " 0.576086956521739 0.423913043478261"; depth 92 ; unknown ; N/A GL192359.1 samtools variation 2037078 2037078 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 52 ; known ; N/A GL192359.1 samtools variation 2038192 2038192 . . . alleles " C T"; frequencies " 0.554455445544555 0.445544554455446"; depth 101 ; unknown ; N/A GL192359.1 samtools variation 2038199 2038199 . . . alleles " C T"; frequencies " 0.554455445544555 0.445544554455446"; depth 101 ; unknown ; N/A GL192359.1 samtools variation 2039417 2039417 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL192359.1 samtools variation 2039420 2039420 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL192359.1 samtools variation 2039976 2039976 . . . alleles " T G"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192359.1 samtools variation 2043276 2043276 . . . alleles " G A"; frequencies " 0.634920634920635 0.365079365079365"; depth 126 ; known ; N/A GL192359.1 samtools variation 2045438 2045438 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL192359.1 samtools variation 2046395 2046395 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192359.1 samtools variation 2046890 2046890 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192359.1 samtools variation 2252240 2252240 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192359.1 samtools variation 2406185 2406185 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192359.1 samtools variation 2627666 2627666 . . . alleles " G C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192359.1 samtools variation 2631854 2631854 . . . alleles " A C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192359.1 samtools variation 2668076 2668076 . . . alleles " G C"; frequencies " 0.495145631067961 0.504854368932039"; depth 103 ; known ; N/A GL192359.1 samtools variation 2730867 2730867 . . . alleles " C T"; frequencies " 0.446428571428571 0.553571428571429"; depth 56 ; known ; N/A GL192359.1 samtools variation 2731281 2731281 . . . alleles " A G"; frequencies " 0.706896551724138 0.293103448275862"; depth 58 ; unknown ; N/A GL192359.1 samtools variation 2731727 2731727 . . . alleles " A T"; frequencies " 0.781094527363184 0.218905472636816"; depth 201 ; unknown ; N/A GL192359.1 samtools variation 2740213 2740213 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192359.1 samtools variation 2740611 2740611 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192359.1 samtools variation 2743531 2743531 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192359.1 samtools variation 2743756 2743756 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192359.1 samtools variation 2743852 2743852 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192359.1 samtools variation 2778112 2778112 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192359.1 samtools variation 2783056 2783056 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192359.1 samtools variation 2796462 2796462 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; known ; N/A GL192359.1 samtools variation 2807458 2807458 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192359.1 samtools variation 2884034 2884034 . . . alleles " C A"; frequencies " 0.366197183098592 0.633802816901408"; depth 71 ; known ; N/A GL192359.1 samtools variation 3017977 3017977 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; synonymous GL192359.1 samtools variation 3279734 3279734 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; N/A GL192359.1 samtools variation 3287487 3287487 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192359.1 samtools variation 3297696 3297696 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192359.1 samtools variation 3310333 3310333 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192359.1 samtools variation 3535151 3535151 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192359.1 samtools variation 3537256 3537256 . . . alleles " G C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192359.1 samtools variation 3543672 3543672 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192359.1 samtools variation 3548154 3548154 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 60 ; known ; N/A GL192359.1 samtools variation 3550598 3550598 . . . alleles " A C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192359.1 samtools variation 3552746 3552746 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192359.1 samtools variation 3556750 3556750 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192359.1 samtools variation 3561806 3561806 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192359.1 samtools variation 3561807 3561807 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192359.1 samtools variation 3579812 3579812 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192359.1 samtools variation 3590149 3590149 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL192359.1 samtools variation 3598778 3598778 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192359.1 samtools variation 3601964 3601964 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192359.1 samtools variation 3607701 3607701 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL192359.1 samtools variation 3631545 3631545 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192359.1 samtools variation 3663786 3663786 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL192359.1 samtools variation 3664924 3664924 . . . alleles " C T"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL192359.1 samtools variation 3665751 3665751 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192359.1 samtools variation 3699807 3699807 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192359.1 samtools variation 3701592 3701592 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192359.1 samtools variation 3728038 3728038 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL192359.1 samtools variation 3728344 3728344 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192359.1 samtools variation 3734475 3734475 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192359.1 samtools variation 3736688 3736688 . . . alleles " A T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192359.1 samtools variation 3753376 3753376 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192359.1 samtools variation 3803917 3803917 . . . alleles " G A"; frequencies " 0.692737430167598 0.307262569832402"; depth 179 ; unknown ; N/A GL192359.1 samtools variation 3820163 3820163 . . . alleles " A G"; frequencies " 0.480769230769231 0.519230769230769"; depth 52 ; unknown ; N/A GL192359.1 samtools variation 3823012 3823012 . . . alleles " C T"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; known ; N/A GL192359.1 samtools variation 3823348 3823348 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192359.1 samtools variation 3834660 3834660 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192359.1 samtools variation 4056111 4056111 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL192359.1 samtools variation 4075981 4075981 . . . alleles " T C"; frequencies " 0.48 0.52"; depth 25 ; known ; N/A GL192359.1 samtools variation 4077373 4077373 . . . alleles " G T"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; unknown ; N/A GL192359.1 samtools variation 4077968 4077968 . . . alleles " C G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL192359.1 samtools variation 4079405 4079405 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 92 ; known ; N/A GL192359.1 samtools variation 4079438 4079438 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 38 ; known ; N/A GL192359.1 samtools variation 4080319 4080319 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192359.1 samtools variation 4080378 4080378 . . . alleles " T C"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; N/A GL192359.1 samtools variation 4081098 4081098 . . . alleles " A G"; frequencies " 0.577777777777778 0.422222222222222"; depth 90 ; unknown ; N/A GL192359.1 samtools variation 4081346 4081346 . . . alleles " C T"; frequencies " 0.370967741935484 0.629032258064516"; depth 62 ; known ; N/A GL192359.1 samtools variation 4085938 4085938 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192359.1 samtools variation 4089617 4089617 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192359.1 samtools variation 4092735 4092735 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192359.1 samtools variation 4094832 4094832 . . . alleles " T A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192360.1 samtools variation 570380 570380 . . . alleles " C A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192360.1 samtools variation 570736 570736 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192360.1 samtools variation 750375 750375 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192360.1 samtools variation 918113 918113 . . . alleles " C G"; frequencies " 0.53030303030303 0.46969696969697"; depth 66 ; unknown ; N/A GL192360.1 samtools variation 919578 919578 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 48 ; known ; N/A GL192360.1 samtools variation 1026657 1026657 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL192360.1 samtools variation 1084481 1084481 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192360.1 samtools variation 1494862 1494862 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 126 ; unknown ; synonymous GL192360.1 samtools variation 1510323 1510323 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192360.1 samtools variation 1510340 1510340 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192360.1 samtools variation 1513757 1513757 . . . alleles " G C"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL192360.1 samtools variation 1514348 1514348 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192360.1 samtools variation 1515995 1515995 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192360.1 samtools variation 1518722 1518722 . . . alleles " A G"; frequencies " 0.603658536585366 0.396341463414634"; depth 164 ; unknown ; synonymous GL192360.1 samtools variation 1519210 1519210 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192360.1 samtools variation 1519936 1519936 . . . alleles " A G"; frequencies " 0.677966101694915 0.322033898305085"; depth 59 ; unknown ; N/A GL192360.1 samtools variation 1522507 1522507 . . . alleles " G A"; frequencies " 0.447368421052632 0.552631578947368"; depth 38 ; unknown ; N/A GL192360.1 samtools variation 1522692 1522692 . . . alleles " C T"; frequencies " 0.788732394366197 0.211267605633803"; depth 71 ; unknown ; N/A GL192360.1 samtools variation 1525071 1525071 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; unknown ; N/A GL192360.1 samtools variation 1533515 1533515 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192360.1 samtools variation 1534305 1534305 . . . alleles " T C"; frequencies " 0.529850746268657 0.470149253731343"; depth 134 ; unknown ; N/A GL192360.1 samtools variation 1534630 1534630 . . . alleles " A G"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; N/A GL192360.1 samtools variation 1535285 1535285 . . . alleles " G T"; frequencies " 0.656565656565657 0.343434343434343"; depth 99 ; unknown ; N/A GL192360.1 samtools variation 1535426 1535426 . . . alleles " G A"; frequencies " 0.655737704918033 0.344262295081967"; depth 61 ; unknown ; N/A GL192360.1 samtools variation 1562242 1562242 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192360.1 samtools variation 1563380 1563380 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192360.1 samtools variation 1564001 1564001 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192360.1 samtools variation 1567551 1567551 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192360.1 samtools variation 1569091 1569091 . . . alleles " T A"; frequencies " 0.425 0.575"; depth 40 ; unknown ; N/A GL192360.1 samtools variation 1735122 1735122 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 40 ; unknown ; N/A GL192360.1 samtools variation 1738544 1738544 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192360.1 samtools variation 1984569 1984569 . . . alleles " C T"; frequencies " 0.370967741935484 0.629032258064516"; depth 62 ; unknown ; synonymous GL192360.1 samtools variation 3046718 3046718 . . . alleles " A G"; frequencies " 0.640394088669951 0.359605911330049"; depth 203 ; unknown ; N/A GL192360.1 samtools variation 3534061 3534061 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 26 ; known ; non-synonymous GL192360.1 samtools variation 4030686 4030686 . . . alleles " C T"; frequencies " 0.768647281921618 0.231352718078382"; depth 791 ; unknown ; N/A GL192360.1 samtools variation 4093985 4093985 . . . alleles " T A"; frequencies " 0.602941176470588 0.397058823529412"; depth 68 ; unknown ; N/A GL192360.1 samtools variation 4094059 4094059 . . . alleles " C T"; frequencies " 0.666666666666667 0.307692307692308"; depth 39 ; unknown ; N/A GL192360.1 samtools variation 4095081 4095081 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192360.1 samtools variation 4095328 4095328 . . . alleles " T C"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL192361.1 samtools variation 39951 39951 . . . alleles " T G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192361.1 samtools variation 62041 62041 . . . alleles " A C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192361.1 samtools variation 62153 62153 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192361.1 samtools variation 69253 69253 . . . alleles " G T"; frequencies " 0.229166666666667 0.770833333333333"; depth 48 ; unknown ; N/A GL192361.1 samtools variation 71338 71338 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; known ; N/A GL192361.1 samtools variation 71851 71851 . . . alleles " T C"; frequencies " 0.464419475655431 0.535580524344569"; depth 267 ; unknown ; N/A GL192361.1 samtools variation 166957 166957 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 85 ; unknown ; synonymous GL192361.1 samtools variation 177692 177692 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; synonymous GL192361.1 samtools variation 178562 178562 . . . alleles " C T"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; known ; synonymous GL192361.1 samtools variation 179578 179578 . . . alleles " C T"; frequencies " 0.630952380952381 0.369047619047619"; depth 84 ; unknown ; synonymous GL192361.1 samtools variation 180052 180052 . . . alleles " A C"; frequencies " 0.541176470588235 0.458823529411765"; depth 85 ; known ; N/A GL192361.1 samtools variation 180461 180461 . . . alleles " A G"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; known ; N/A GL192361.1 samtools variation 180713 180713 . . . alleles " G A"; frequencies " 0.687203791469194 0.312796208530806"; depth 211 ; known ; N/A GL192361.1 samtools variation 341696 341696 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192361.1 samtools variation 346878 346878 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192361.1 samtools variation 346900 346900 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192361.1 samtools variation 346997 346997 . . . alleles " A T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192361.1 samtools variation 347125 347125 . . . alleles " G C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192361.1 samtools variation 347204 347204 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192361.1 samtools variation 350119 350119 . . . alleles " T C"; frequencies " 0.614035087719298 0.385964912280702"; depth 57 ; unknown ; N/A GL192361.1 samtools variation 350933 350933 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192361.1 samtools variation 357925 357925 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192361.1 samtools variation 359371 359371 . . . alleles " T C"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192361.1 samtools variation 379562 379562 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192361.1 samtools variation 380045 380045 . . . alleles " T C"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; known ; N/A GL192361.1 samtools variation 381686 381686 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192361.1 samtools variation 381743 381743 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL192361.1 samtools variation 381786 381786 . . . alleles " C T"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL192361.1 samtools variation 382841 382841 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192361.1 samtools variation 383254 383254 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192361.1 samtools variation 383438 383438 . . . alleles " G C"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; known ; N/A GL192361.1 samtools variation 384325 384325 . . . alleles " A C"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL192361.1 samtools variation 384413 384413 . . . alleles " G T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192361.1 samtools variation 384694 384694 . . . alleles " A G"; frequencies " 0.527777777777778 0.472222222222222"; depth 108 ; known ; non-synonymous GL192361.1 samtools variation 384778 384778 . . . alleles " A G"; frequencies " 0.51685393258427 0.48314606741573"; depth 89 ; known ; non-synonymous GL192361.1 samtools variation 384810 384810 . . . alleles " G C"; frequencies " 0.546218487394958 0.453781512605042"; depth 119 ; known ; synonymous GL192361.1 samtools variation 385004 385004 . . . alleles " T C"; frequencies " 0.398809523809524 0.601190476190476"; depth 168 ; known ; N/A GL192361.1 samtools variation 385034 385034 . . . alleles " G A"; frequencies " 0.5662100456621 0.4337899543379"; depth 219 ; known ; N/A GL192361.1 samtools variation 385213 385213 . . . alleles " T G"; frequencies " 0.564516129032258 0.435483870967742"; depth 124 ; known ; N/A GL192361.1 samtools variation 385252 385252 . . . alleles " G A"; frequencies " 0.387096774193548 0.612903225806452"; depth 124 ; known ; N/A GL192361.1 samtools variation 386109 386109 . . . alleles " C T"; frequencies " 0.595555555555556 0.404444444444444"; depth 225 ; known ; N/A GL192361.1 samtools variation 386135 386135 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 234 ; known ; N/A GL192361.1 samtools variation 399524 399524 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192361.1 samtools variation 401773 401773 . . . alleles " G A"; frequencies " 0.34251968503937 0.65748031496063"; depth 254 ; known ; synonymous GL192361.1 samtools variation 402087 402087 . . . alleles " A G"; frequencies " 0.412322274881517 0.587677725118483"; depth 211 ; known ; non-synonymous GL192361.1 samtools variation 402336 402336 . . . alleles " T G"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; known ; N/A GL192361.1 samtools variation 402449 402449 . . . alleles " T C"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; known ; N/A GL192361.1 samtools variation 402480 402480 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192361.1 samtools variation 403008 403008 . . . alleles " T C"; frequencies " 0.306122448979592 0.693877551020408"; depth 49 ; known ; N/A GL192361.1 samtools variation 403124 403124 . . . alleles " G C"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL192361.1 samtools variation 403669 403669 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 40 ; known ; N/A GL192361.1 samtools variation 403705 403705 . . . alleles " G A"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL192361.1 samtools variation 404177 404177 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL192361.1 samtools variation 404366 404366 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 45 ; known ; N/A GL192361.1 samtools variation 404849 404849 . . . alleles " A G"; frequencies " 0.569620253164557 0.430379746835443"; depth 79 ; known ; N/A GL192361.1 samtools variation 404896 404896 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 85 ; known ; N/A GL192361.1 samtools variation 404973 404973 . . . alleles " T C"; frequencies " 0.395833333333333 0.604166666666667"; depth 96 ; known ; N/A GL192361.1 samtools variation 405109 405109 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192361.1 samtools variation 406952 406952 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL192361.1 samtools variation 408693 408693 . . . alleles " T C"; frequencies " 0.315789473684211 0.684210526315789"; depth 76 ; known ; N/A GL192361.1 samtools variation 408761 408761 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 40 ; unknown ; N/A GL192361.1 samtools variation 408910 408910 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 56 ; known ; N/A GL192361.1 samtools variation 409887 409887 . . . alleles " G A"; frequencies " 0.361111111111111 0.638888888888889"; depth 36 ; known ; N/A GL192361.1 samtools variation 411019 411019 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192361.1 samtools variation 411623 411623 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; N/A GL192361.1 samtools variation 411643 411643 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL192361.1 samtools variation 412336 412336 . . . alleles " T C"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL192361.1 samtools variation 412932 412932 . . . alleles " C A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192361.1 samtools variation 413991 413991 . . . alleles " A C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192361.1 samtools variation 414851 414851 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192361.1 samtools variation 415212 415212 . . . alleles " G T"; frequencies " 0.688311688311688 0.311688311688312"; depth 154 ; unknown ; N/A GL192361.1 samtools variation 415960 415960 . . . alleles " G A"; frequencies " 0.544444444444444 0.455555555555556"; depth 270 ; unknown ; synonymous GL192361.1 samtools variation 415995 415995 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 325 ; unknown ; N/A GL192361.1 samtools variation 416129 416129 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 40 ; unknown ; N/A GL192361.1 samtools variation 418832 418832 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192361.1 samtools variation 418990 418990 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192361.1 samtools variation 419199 419199 . . . alleles " C T"; frequencies " 0.643916913946588 0.356083086053412"; depth 337 ; unknown ; non-synonymous GL192361.1 samtools variation 419295 419295 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192361.1 samtools variation 419411 419411 . . . alleles " A G"; frequencies " 0.548387096774194 0.451612903225806"; depth 62 ; unknown ; N/A GL192361.1 samtools variation 419545 419545 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 34 ; unknown ; N/A GL192361.1 samtools variation 419556 419556 . . . alleles " G A"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192361.1 samtools variation 419836 419836 . . . alleles " A C"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL192361.1 samtools variation 420186 420186 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL192361.1 samtools variation 421064 421064 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192361.1 samtools variation 421170 421170 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL192361.1 samtools variation 423979 423979 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 120 ; unknown ; N/A GL192361.1 samtools variation 424012 424012 . . . alleles " C A"; frequencies " 0.613793103448276 0.386206896551724"; depth 145 ; unknown ; N/A GL192361.1 samtools variation 424048 424048 . . . alleles " C G"; frequencies " 0.563636363636364 0.436363636363636"; depth 110 ; unknown ; N/A GL192361.1 samtools variation 424547 424547 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192361.1 samtools variation 424566 424566 . . . alleles " G C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192361.1 samtools variation 425356 425356 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192361.1 samtools variation 432983 432983 . . . alleles " C A"; frequencies " 0.60377358490566 0.39622641509434"; depth 53 ; unknown ; N/A GL192361.1 samtools variation 433373 433373 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192361.1 samtools variation 441243 441243 . . . alleles " T C"; frequencies " 0.241379310344828 0.758620689655172"; depth 29 ; unknown ; N/A GL192361.1 samtools variation 452695 452695 . . . alleles " A G"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192361.1 samtools variation 452753 452753 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192361.1 samtools variation 453407 453407 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192361.1 samtools variation 453438 453438 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192361.1 samtools variation 453617 453617 . . . alleles " G T"; frequencies " 0.684210526315789 0.315789473684211"; depth 57 ; unknown ; N/A GL192361.1 samtools variation 454415 454415 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; non-synonymous GL192361.1 samtools variation 458482 458482 . . . alleles " G C"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192361.1 samtools variation 458579 458579 . . . alleles " T C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; N/A GL192361.1 samtools variation 476271 476271 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192361.1 samtools variation 517735 517735 . . . alleles " A T"; frequencies " 0.218181818181818 0.781818181818182"; depth 55 ; known ; non-synonymous GL192361.1 samtools variation 518859 518859 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192361.1 samtools variation 651850 651850 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192361.1 samtools variation 651884 651884 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192361.1 samtools variation 678289 678289 . . . alleles " G A"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192361.1 samtools variation 2672150 2672150 . . . alleles " G A"; frequencies " 0.426829268292683 0.573170731707317"; depth 82 ; known ; synonymous GL192361.1 samtools variation 2842831 2842831 . . . alleles " G C"; frequencies " 0.716417910447761 0.283582089552239"; depth 67 ; unknown ; N/A GL192361.1 samtools variation 2848012 2848012 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; non-synonymous GL192361.1 samtools variation 2854311 2854311 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; synonymous GL192361.1 samtools variation 2854338 2854338 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; synonymous GL192361.1 samtools variation 2874322 2874322 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 35 ; unknown ; synonymous GL192361.1 samtools variation 2925061 2925061 . . . alleles " C T"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; unknown ; N/A GL192361.1 samtools variation 2938253 2938253 . . . alleles " G T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192361.1 samtools variation 3345067 3345067 . . . alleles " G A"; frequencies " 0.526923076923077 0.473076923076923"; depth 520 ; unknown ; N/A GL192361.1 samtools variation 3399817 3399817 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192361.1 samtools variation 3414102 3414102 . . . alleles " T G"; frequencies " 0.666223404255319 0.333776595744681"; depth 752 ; unknown ; N/A GL192361.1 samtools variation 3582718 3582718 . . . alleles " G A"; frequencies " 0.387096774193548 0.612903225806452"; depth 124 ; unknown ; synonymous GL192361.1 samtools variation 3582742 3582742 . . . alleles " G A"; frequencies " 0.349056603773585 0.650943396226415"; depth 106 ; unknown ; synonymous GL192361.1 samtools variation 3615255 3615255 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; synonymous GL192362.1 samtools variation 1797549 1797549 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL192362.1 samtools variation 1809425 1809425 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192362.1 samtools variation 1845724 1845724 . . . alleles " C T"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; known ; N/A GL192362.1 samtools variation 1879453 1879453 . . . alleles " T C"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; unknown ; N/A GL192362.1 samtools variation 1879579 1879579 . . . alleles " T C"; frequencies " 0.568627450980392 0.431372549019608"; depth 51 ; unknown ; N/A GL192362.1 samtools variation 1880313 1880313 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; N/A GL192362.1 samtools variation 1880416 1880416 . . . alleles " T G"; frequencies " 0.621621621621622 0.378378378378378"; depth 74 ; unknown ; N/A GL192362.1 samtools variation 1883961 1883961 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 85 ; known ; non-synonymous GL192362.1 samtools variation 1887296 1887296 . . . alleles " G A"; frequencies " 0.490196078431373 0.509803921568627"; depth 51 ; unknown ; synonymous GL192362.1 samtools variation 1892757 1892757 . . . alleles " A T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192362.1 samtools variation 1892892 1892892 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192362.1 samtools variation 1903854 1903854 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192362.1 samtools variation 1913156 1913156 . . . alleles " A C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192362.1 samtools variation 2340855 2340855 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 68 ; unknown ; synonymous GL192362.1 samtools variation 2349492 2349492 . . . alleles " G A"; frequencies " 0.746031746031746 0.253968253968254"; depth 63 ; unknown ; synonymous GL192362.1 samtools variation 2354696 2354696 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192362.1 samtools variation 2354752 2354752 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192362.1 samtools variation 2357344 2357344 . . . alleles " A T"; frequencies " 0.699152542372881 0.300847457627119"; depth 236 ; unknown ; N/A GL192362.1 samtools variation 2586197 2586197 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192362.1 samtools variation 2677644 2677644 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 38 ; unknown ; synonymous GL192362.1 samtools variation 2742038 2742038 . . . alleles " G T"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; N/A GL192362.1 samtools variation 2825586 2825586 . . . alleles " G C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192362.1 samtools variation 3017307 3017307 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 28 ; unknown ; synonymous GL192362.1 samtools variation 3042958 3042958 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 55 ; unknown ; synonymous GL192362.1 samtools variation 3068520 3068520 . . . alleles " C T"; frequencies " 0.432835820895522 0.567164179104478"; depth 67 ; unknown ; synonymous GL192362.1 samtools variation 3070909 3070909 . . . alleles " A G"; frequencies " 0.69811320754717 0.30188679245283"; depth 106 ; unknown ; non-synonymous GL192362.1 samtools variation 3076257 3076257 . . . alleles " C T"; frequencies " 0.573770491803279 0.426229508196721"; depth 122 ; unknown ; synonymous GL192362.1 samtools variation 3083116 3083116 . . . alleles " G A"; frequencies " 0.552631578947368 0.447368421052632"; depth 114 ; unknown ; N/A GL192362.1 samtools variation 3284410 3284410 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192362.1 samtools variation 3289358 3289358 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192362.1 samtools variation 3291459 3291459 . . . alleles " C T"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL192362.1 samtools variation 3591413 3591413 . . . alleles " C T"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; synonymous GL192363.1 samtools variation 357927 357927 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192363.1 samtools variation 364396 364396 . . . alleles " C A"; frequencies " 0.789473684210526 0.210526315789474"; depth 76 ; unknown ; non-synonymous GL192363.1 samtools variation 371084 371084 . . . alleles " T C"; frequencies " 0.701298701298701 0.298701298701299"; depth 77 ; unknown ; synonymous GL192363.1 samtools variation 688120 688120 . . . alleles " T G"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192363.1 samtools variation 688236 688236 . . . alleles " T C"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; unknown ; N/A GL192363.1 samtools variation 689891 689891 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL192363.1 samtools variation 690145 690145 . . . alleles " G C"; frequencies " 0.725806451612903 0.274193548387097"; depth 62 ; unknown ; N/A GL192363.1 samtools variation 722177 722177 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192363.1 samtools variation 722371 722371 . . . alleles " A G"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL192363.1 samtools variation 723934 723934 . . . alleles " T A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192363.1 samtools variation 724391 724391 . . . alleles " C G"; frequencies " 0.794871794871795 0.205128205128205"; depth 351 ; unknown ; N/A GL192363.1 samtools variation 726489 726489 . . . alleles " G A"; frequencies " 0.291457286432161 0.708542713567839"; depth 398 ; known ; N/A GL192363.1 samtools variation 727216 727216 . . . alleles " C G"; frequencies " 0.301136363636364 0.696022727272727"; depth 352 ; known ; N/A GL192363.1 samtools variation 727897 727897 . . . alleles " G T"; frequencies " 0.224431818181818 0.775568181818182"; depth 352 ; known ; N/A GL192363.1 samtools variation 727925 727925 . . . alleles " C A"; frequencies " 0.448529411764706 0.549019607843137"; depth 408 ; known ; N/A GL192363.1 samtools variation 960345 960345 . . . alleles " A T"; frequencies " 0.521739130434783 0.478260869565217"; depth 46 ; unknown ; non-synonymous GL192363.1 samtools variation 960366 960366 . . . alleles " C T"; frequencies " 0.558139534883721 0.441860465116279"; depth 43 ; unknown ; non-synonymous GL192363.1 samtools variation 960635 960635 . . . alleles " A C"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; unknown ; synonymous GL192363.1 samtools variation 982876 982876 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192363.1 samtools variation 997820 997820 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 52 ; unknown ; N/A GL192363.1 samtools variation 999514 999514 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192363.1 samtools variation 999903 999903 . . . alleles " G A"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192363.1 samtools variation 1061300 1061300 . . . alleles " T C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192363.1 samtools variation 1197570 1197570 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 32 ; unknown ; N/A GL192363.1 samtools variation 1268630 1268630 . . . alleles " A G"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; non-synonymous GL192363.1 samtools variation 1358258 1358258 . . . alleles " C T"; frequencies " 0.38423645320197 0.61576354679803"; depth 203 ; known ; synonymous GL192363.1 samtools variation 1359181 1359181 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 240 ; known ; synonymous GL192363.1 samtools variation 1359451 1359451 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192363.1 samtools variation 1359681 1359681 . . . alleles " T C"; frequencies " 0.202429149797571 0.797570850202429"; depth 247 ; known ; synonymous GL192363.1 samtools variation 1361256 1361256 . . . alleles " A G"; frequencies " 0.745664739884393 0.254335260115607"; depth 173 ; known ; synonymous GL192363.1 samtools variation 1363628 1363628 . . . alleles " G A"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; known ; N/A GL192363.1 samtools variation 1363678 1363678 . . . alleles " C G"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; N/A GL192363.1 samtools variation 1363752 1363752 . . . alleles " A T"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; known ; N/A GL192363.1 samtools variation 1363799 1363799 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL192363.1 samtools variation 1363805 1363805 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192363.1 samtools variation 1364267 1364267 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192363.1 samtools variation 1366531 1366531 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192363.1 samtools variation 1371801 1371801 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192363.1 samtools variation 1380231 1380231 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 78 ; known ; non-synonymous GL192363.1 samtools variation 1453688 1453688 . . . alleles " C T"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; synonymous GL192363.1 samtools variation 1455088 1455088 . . . alleles " T C"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; non-synonymous GL192363.1 samtools variation 1461743 1461743 . . . alleles " G A"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL192363.1 samtools variation 1461906 1461906 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192363.1 samtools variation 2112499 2112499 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192363.1 samtools variation 2115576 2115576 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 33 ; known ; N/A GL192363.1 samtools variation 2119295 2119295 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192363.1 samtools variation 2119697 2119697 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192363.1 samtools variation 2222181 2222181 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192363.1 samtools variation 2461814 2461814 . . . alleles " C T"; frequencies " 0.506849315068493 0.493150684931507"; depth 73 ; unknown ; non-synonymous GL192363.1 samtools variation 2471482 2471482 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL192363.1 samtools variation 2473135 2473135 . . . alleles " T C"; frequencies " 0.507537688442211 0.492462311557789"; depth 199 ; unknown ; synonymous GL192363.1 samtools variation 2473687 2473687 . . . alleles " C A"; frequencies " 0.52 0.48"; depth 125 ; unknown ; N/A GL192363.1 samtools variation 2474137 2474137 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL192363.1 samtools variation 2476324 2476324 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192363.1 samtools variation 2476375 2476375 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192363.1 samtools variation 2476756 2476756 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192363.1 samtools variation 2479767 2479767 . . . alleles " G A"; frequencies " 0.525252525252525 0.474747474747475"; depth 99 ; unknown ; synonymous GL192363.1 samtools variation 2486946 2486946 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192363.1 samtools variation 2491730 2491730 . . . alleles " A C"; frequencies " 0.609375 0.390625"; depth 128 ; unknown ; N/A GL192363.1 samtools variation 2492603 2492603 . . . alleles " C T"; frequencies " 0.735294117647059 0.264705882352941"; depth 102 ; unknown ; N/A GL192363.1 samtools variation 2492625 2492625 . . . alleles " T C"; frequencies " 0.675438596491228 0.324561403508772"; depth 114 ; unknown ; N/A GL192363.1 samtools variation 2496154 2496154 . . . alleles " A G"; frequencies " 0.602564102564103 0.397435897435897"; depth 78 ; known ; N/A GL192363.1 samtools variation 2498211 2498211 . . . alleles " G A"; frequencies " 0.617283950617284 0.382716049382716"; depth 81 ; unknown ; N/A GL192363.1 samtools variation 2498513 2498513 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192363.1 samtools variation 2498940 2498940 . . . alleles " T C"; frequencies " 0.759626604434072 0.239206534422404"; depth 857 ; unknown ; non-synonymous GL192363.1 samtools variation 2501814 2501814 . . . alleles " G C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192363.1 samtools variation 2502826 2502826 . . . alleles " G T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL192363.1 samtools variation 2504325 2504325 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192363.1 samtools variation 2504647 2504647 . . . alleles " A G"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; known ; N/A GL192363.1 samtools variation 2504817 2504817 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192363.1 samtools variation 2504962 2504962 . . . alleles " T C"; frequencies " 0.706407137064071 0.292781832927818"; depth 1233 ; unknown ; synonymous GL192363.1 samtools variation 2505650 2505650 . . . alleles " G C"; frequencies " 0.352941176470588 0.647058823529412"; depth 34 ; known ; N/A GL192363.1 samtools variation 2507863 2507863 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192363.1 samtools variation 2509004 2509004 . . . alleles " A G"; frequencies " 0.536842105263158 0.463157894736842"; depth 760 ; known ; synonymous GL192363.1 samtools variation 2509295 2509295 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192363.1 samtools variation 2510734 2510734 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192363.1 samtools variation 2511973 2511973 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192363.1 samtools variation 2512645 2512645 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192363.1 samtools variation 2513465 2513465 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192363.1 samtools variation 2515068 2515068 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192363.1 samtools variation 2516367 2516367 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192363.1 samtools variation 2516864 2516864 . . . alleles " G C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; N/A GL192363.1 samtools variation 2517227 2517227 . . . alleles " C A"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL192363.1 samtools variation 2517256 2517256 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192363.1 samtools variation 2518717 2518717 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192363.1 samtools variation 2520613 2520613 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 55 ; unknown ; N/A GL192363.1 samtools variation 2520648 2520648 . . . alleles " T C"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; N/A GL192363.1 samtools variation 2522937 2522937 . . . alleles " T A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192363.1 samtools variation 2524769 2524769 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 33 ; unknown ; N/A GL192363.1 samtools variation 2526373 2526373 . . . alleles " A C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192363.1 samtools variation 2528504 2528504 . . . alleles " A C"; frequencies " 0.225 0.775"; depth 40 ; unknown ; N/A GL192363.1 samtools variation 2529846 2529846 . . . alleles " G T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192363.1 samtools variation 2532993 2532993 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 36 ; unknown ; N/A GL192363.1 samtools variation 3610320 3610320 . . . alleles " A G"; frequencies " 0.361702127659574 0.638297872340426"; depth 47 ; known ; N/A GL192363.1 samtools variation 3612999 3612999 . . . alleles " T C"; frequencies " 0.639175257731959 0.360824742268041"; depth 194 ; known ; synonymous GL192363.1 samtools variation 3722268 3722268 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 42 ; known ; N/A GL192363.1 samtools variation 4019096 4019096 . . . alleles " A G"; frequencies " 0.575 0.425"; depth 80 ; known ; synonymous GL192363.1 samtools variation 4040547 4040547 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192363.1 samtools variation 4042831 4042831 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 48 ; known ; N/A GL192363.1 samtools variation 4068996 4068996 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192363.1 samtools variation 4084052 4084052 . . . alleles " C A"; frequencies " 0.726495726495726 0.273504273504274"; depth 117 ; unknown ; N/A GL192363.1 samtools variation 4127124 4127124 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192363.1 samtools variation 4137985 4137985 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192363.1 samtools variation 4137998 4137998 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192363.1 samtools variation 4140099 4140099 . . . alleles " T C"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL192363.1 samtools variation 4140778 4140778 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192363.1 samtools variation 4141625 4141625 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; known ; N/A GL192363.1 samtools variation 4142363 4142363 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192363.1 samtools variation 4143903 4143903 . . . alleles " G T"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; known ; N/A GL192363.1 samtools variation 4143919 4143919 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 35 ; known ; N/A GL192364.1 samtools variation 126942 126942 . . . alleles " G T"; frequencies " 0.354581673306773 0.645418326693227"; depth 251 ; unknown ; N/A GL192364.1 samtools variation 127646 127646 . . . alleles " A G"; frequencies " 0.440251572327044 0.559748427672956"; depth 159 ; unknown ; N/A GL192364.1 samtools variation 171990 171990 . . . alleles " A T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192364.1 samtools variation 180321 180321 . . . alleles " A G"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; unknown ; N/A GL192364.1 samtools variation 180592 180592 . . . alleles " T G"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL192364.1 samtools variation 180607 180607 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL192364.1 samtools variation 300080 300080 . . . alleles " A G"; frequencies " 0.502164502164502 0.497835497835498"; depth 231 ; unknown ; non-synonymous GL192364.1 samtools variation 300214 300214 . . . alleles " C T"; frequencies " 0.786069651741294 0.213930348258706"; depth 201 ; unknown ; N/A GL192364.1 samtools variation 300901 300901 . . . alleles " C A"; frequencies " 0.493827160493827 0.506172839506173"; depth 81 ; unknown ; N/A GL192364.1 samtools variation 383492 383492 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192364.1 samtools variation 407882 407882 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 65 ; unknown ; N/A GL192364.1 samtools variation 417236 417236 . . . alleles " G C"; frequencies " 0.513661202185792 0.480874316939891"; depth 183 ; unknown ; N/A GL192364.1 samtools variation 638852 638852 . . . alleles " C T"; frequencies " 0.536082474226804 0.463917525773196"; depth 97 ; unknown ; synonymous GL192364.1 samtools variation 646432 646432 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192364.1 samtools variation 655376 655376 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192364.1 samtools variation 662734 662734 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; synonymous GL192364.1 samtools variation 1184617 1184617 . . . alleles " C T"; frequencies " 0.351351351351351 0.648648648648649"; depth 37 ; unknown ; N/A GL192364.1 samtools variation 1191446 1191446 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 30 ; unknown ; N/A GL192364.1 samtools variation 1191467 1191467 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL192364.1 samtools variation 1192387 1192387 . . . alleles " C T"; frequencies " 0.242718446601942 0.757281553398058"; depth 103 ; unknown ; N/A GL192364.1 samtools variation 1192391 1192391 . . . alleles " G A"; frequencies " 0.336538461538462 0.663461538461538"; depth 104 ; unknown ; N/A GL192364.1 samtools variation 1192818 1192818 . . . alleles " C T"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192364.1 samtools variation 1193192 1193192 . . . alleles " T C"; frequencies " 0.78030303030303 0.21969696969697"; depth 132 ; unknown ; N/A GL192364.1 samtools variation 1194321 1194321 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL192364.1 samtools variation 1194400 1194400 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192364.1 samtools variation 1200598 1200598 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 100 ; unknown ; N/A GL192364.1 samtools variation 1203317 1203317 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL192364.1 samtools variation 1204516 1204516 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 91 ; unknown ; N/A GL192364.1 samtools variation 1255664 1255664 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192364.1 samtools variation 1256820 1256820 . . . alleles " T C"; frequencies " 0.386363636363636 0.613636363636364"; depth 44 ; unknown ; N/A GL192364.1 samtools variation 1271145 1271145 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192364.1 samtools variation 1271146 1271146 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192364.1 samtools variation 1286010 1286010 . . . alleles " C T"; frequencies " 0.268292682926829 0.731707317073171"; depth 41 ; unknown ; N/A GL192364.1 samtools variation 1286369 1286369 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 42 ; unknown ; N/A GL192364.1 samtools variation 1286930 1286930 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192364.1 samtools variation 1410438 1410438 . . . alleles " G T"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; unknown ; N/A GL192364.1 samtools variation 1426659 1426659 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192364.1 samtools variation 1427636 1427636 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192364.1 samtools variation 1433452 1433452 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192364.1 samtools variation 1433483 1433483 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192364.1 samtools variation 1435032 1435032 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192364.1 samtools variation 1439293 1439293 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192364.1 samtools variation 1439343 1439343 . . . alleles " C T"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; unknown ; N/A GL192364.1 samtools variation 1441150 1441150 . . . alleles " G A"; frequencies " 0.784615384615385 0.215384615384615"; depth 65 ; unknown ; N/A GL192364.1 samtools variation 1448895 1448895 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192364.1 samtools variation 1461240 1461240 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; non-synonymous GL192364.1 samtools variation 1462923 1462923 . . . alleles " T A"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192364.1 samtools variation 1468742 1468742 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192364.1 samtools variation 2521813 2521813 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192364.1 samtools variation 2565751 2565751 . . . alleles " G T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192364.1 samtools variation 2578348 2578348 . . . alleles " G T"; frequencies " 0.357142857142857 0.642857142857143"; depth 42 ; known ; N/A GL192364.1 samtools variation 2578705 2578705 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192364.1 samtools variation 2578725 2578725 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192364.1 samtools variation 2579398 2579398 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192364.1 samtools variation 2583772 2583772 . . . alleles " G T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL192364.1 samtools variation 2605565 2605565 . . . alleles " G T"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; N/A GL192364.1 samtools variation 2605981 2605981 . . . alleles " C T"; frequencies " 0.397435897435897 0.602564102564103"; depth 78 ; unknown ; N/A GL192364.1 samtools variation 2606006 2606006 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 56 ; unknown ; N/A GL192364.1 samtools variation 2607291 2607291 . . . alleles " C A"; frequencies " 0.547619047619048 0.452380952380952"; depth 42 ; unknown ; N/A GL192364.1 samtools variation 2607316 2607316 . . . alleles " T C"; frequencies " 0.469387755102041 0.530612244897959"; depth 49 ; unknown ; N/A GL192364.1 samtools variation 2608762 2608762 . . . alleles " T C"; frequencies " 0.584905660377358 0.415094339622642"; depth 53 ; unknown ; N/A GL192364.1 samtools variation 2608896 2608896 . . . alleles " A G"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; N/A GL192364.1 samtools variation 2609451 2609451 . . . alleles " T G"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL192364.1 samtools variation 2609452 2609452 . . . alleles " T C"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL192364.1 samtools variation 2627108 2627108 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192364.1 samtools variation 2627247 2627247 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192364.1 samtools variation 2627253 2627253 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192364.1 samtools variation 2630907 2630907 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192364.1 samtools variation 2632787 2632787 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192364.1 samtools variation 2634005 2634005 . . . alleles " A C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192364.1 samtools variation 2641721 2641721 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192364.1 samtools variation 2642598 2642598 . . . alleles " A C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192364.1 samtools variation 2644598 2644598 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192364.1 samtools variation 2644652 2644652 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192364.1 samtools variation 2672608 2672608 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192364.1 samtools variation 2672667 2672667 . . . alleles " T A"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL192364.1 samtools variation 2672830 2672830 . . . alleles " C A"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL192364.1 samtools variation 2672901 2672901 . . . alleles " C T"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192364.1 samtools variation 2673585 2673585 . . . alleles " G C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192364.1 samtools variation 2673881 2673881 . . . alleles " C T"; frequencies " 0.413793103448276 0.586206896551724"; depth 58 ; unknown ; N/A GL192364.1 samtools variation 2674174 2674174 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192364.1 samtools variation 2682033 2682033 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192364.1 samtools variation 2682898 2682898 . . . alleles " C G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192364.1 samtools variation 2682914 2682914 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192364.1 samtools variation 2686355 2686355 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192364.1 samtools variation 2686539 2686539 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192364.1 samtools variation 2687886 2687886 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL192364.1 samtools variation 2687898 2687898 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192364.1 samtools variation 2687940 2687940 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192364.1 samtools variation 2688519 2688519 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192364.1 samtools variation 2688797 2688797 . . . alleles " G A"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; N/A GL192364.1 samtools variation 2688808 2688808 . . . alleles " T C"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL192364.1 samtools variation 2691630 2691630 . . . alleles " T G"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; N/A GL192364.1 samtools variation 2691718 2691718 . . . alleles " C T"; frequencies " 0.710526315789474 0.289473684210526"; depth 114 ; unknown ; N/A GL192364.1 samtools variation 2692446 2692446 . . . alleles " C T"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL192364.1 samtools variation 2692457 2692457 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL192364.1 samtools variation 2692588 2692588 . . . alleles " T C"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192364.1 samtools variation 2692948 2692948 . . . alleles " C T"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192364.1 samtools variation 2693139 2693139 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192364.1 samtools variation 2693357 2693357 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192364.1 samtools variation 2697310 2697310 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192364.1 samtools variation 2702215 2702215 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 42 ; unknown ; N/A GL192364.1 samtools variation 2703514 2703514 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192364.1 samtools variation 2706363 2706363 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192364.1 samtools variation 2706418 2706418 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192364.1 samtools variation 2709130 2709130 . . . alleles " T C"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL192364.1 samtools variation 2710826 2710826 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192364.1 samtools variation 2714411 2714411 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; N/A GL192364.1 samtools variation 2714418 2714418 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; unknown ; N/A GL192364.1 samtools variation 2715108 2715108 . . . alleles " T A"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192364.1 samtools variation 2715179 2715179 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192364.1 samtools variation 2716954 2716954 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL192364.1 samtools variation 2718450 2718450 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; unknown ; N/A GL192364.1 samtools variation 2718965 2718965 . . . alleles " C T"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192364.1 samtools variation 2719027 2719027 . . . alleles " C T"; frequencies " 0.358208955223881 0.641791044776119"; depth 67 ; unknown ; N/A GL192364.1 samtools variation 2719176 2719176 . . . alleles " T C"; frequencies " 0.637931034482759 0.362068965517241"; depth 58 ; unknown ; N/A GL192364.1 samtools variation 2719213 2719213 . . . alleles " T C"; frequencies " 0.761904761904762 0.238095238095238"; depth 63 ; unknown ; N/A GL192364.1 samtools variation 2719379 2719379 . . . alleles " A C"; frequencies " 0.43859649122807 0.56140350877193"; depth 57 ; unknown ; N/A GL192364.1 samtools variation 2721406 2721406 . . . alleles " G A"; frequencies " 0.663461538461538 0.336538461538462"; depth 104 ; unknown ; N/A GL192364.1 samtools variation 2721522 2721522 . . . alleles " G A"; frequencies " 0.607594936708861 0.392405063291139"; depth 79 ; unknown ; N/A GL192364.1 samtools variation 2721905 2721905 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 75 ; unknown ; N/A GL192364.1 samtools variation 2723137 2723137 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192364.1 samtools variation 2729769 2729769 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192364.1 samtools variation 2729875 2729875 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192364.1 samtools variation 2732840 2732840 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192364.1 samtools variation 2732866 2732866 . . . alleles " A C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192364.1 samtools variation 2733770 2733770 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192364.1 samtools variation 2738762 2738762 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192364.1 samtools variation 2739002 2739002 . . . alleles " G A"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL192364.1 samtools variation 2739010 2739010 . . . alleles " G C"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192364.1 samtools variation 2764798 2764798 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192364.1 samtools variation 2768981 2768981 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL192364.1 samtools variation 2789361 2789361 . . . alleles " G T"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; N/A GL192364.1 samtools variation 2789852 2789852 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192364.1 samtools variation 2801907 2801907 . . . alleles " G A"; frequencies " 0.604166666666667 0.395833333333333"; depth 48 ; unknown ; N/A GL192364.1 samtools variation 2849159 2849159 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192364.1 samtools variation 2875289 2875289 . . . alleles " G T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192364.1 samtools variation 2952949 2952949 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192364.1 samtools variation 3406274 3406274 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192364.1 samtools variation 3419633 3419633 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192364.1 samtools variation 3614450 3614450 . . . alleles " T C"; frequencies " 0.419642857142857 0.580357142857143"; depth 112 ; unknown ; synonymous GL192364.1 samtools variation 3619895 3619895 . . . alleles " G A"; frequencies " 0.797665369649806 0.202334630350195"; depth 257 ; unknown ; non-synonymous GL192364.1 samtools variation 3627120 3627120 . . . alleles " G T"; frequencies " 0.751633986928105 0.248366013071895"; depth 153 ; unknown ; non-synonymous GL192364.1 samtools variation 3631765 3631765 . . . alleles " C G"; frequencies " 0.2 0.8"; depth 45 ; unknown ; N/A GL192364.1 samtools variation 3634516 3634516 . . . alleles " G A"; frequencies " 0.634408602150538 0.365591397849462"; depth 279 ; unknown ; N/A GL192364.1 samtools variation 3647337 3647337 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192364.1 samtools variation 3652808 3652808 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192364.1 samtools variation 3655602 3655602 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL192365.1 samtools variation 3513 3513 . . . alleles " G A"; frequencies " 0.73469387755102 0.26530612244898"; depth 49 ; known ; N/A GL192365.1 samtools variation 8758 8758 . . . alleles " T G"; frequencies " 0.29 0.71"; depth 100 ; unknown ; N/A GL192365.1 samtools variation 18922 18922 . . . alleles " T A"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL192365.1 samtools variation 20113 20113 . . . alleles " C A"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL192365.1 samtools variation 21536 21536 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192365.1 samtools variation 21764 21764 . . . alleles " T A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192365.1 samtools variation 26408 26408 . . . alleles " A C"; frequencies " 0.361111111111111 0.638888888888889"; depth 36 ; unknown ; N/A GL192365.1 samtools variation 39748 39748 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192365.1 samtools variation 62209 62209 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 44 ; unknown ; N/A GL192365.1 samtools variation 62448 62448 . . . alleles " A G"; frequencies " 0.675 0.325"; depth 80 ; known ; N/A GL192365.1 samtools variation 62515 62515 . . . alleles " C G"; frequencies " 0.312820512820513 0.687179487179487"; depth 195 ; unknown ; N/A GL192365.1 samtools variation 62670 62670 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; unknown ; N/A GL192365.1 samtools variation 64383 64383 . . . alleles " T C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192365.1 samtools variation 64817 64817 . . . alleles " G A"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; known ; N/A GL192365.1 samtools variation 70222 70222 . . . alleles " A G"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL192365.1 samtools variation 70565 70565 . . . alleles " T C"; frequencies " 0.396825396825397 0.603174603174603"; depth 126 ; known ; N/A GL192365.1 samtools variation 73415 73415 . . . alleles " C A"; frequencies " 0.367647058823529 0.632352941176471"; depth 68 ; known ; N/A GL192365.1 samtools variation 73464 73464 . . . alleles " C G"; frequencies " 0.297297297297297 0.702702702702703"; depth 74 ; known ; N/A GL192365.1 samtools variation 74646 74646 . . . alleles " T C"; frequencies " 0.757396449704142 0.242603550295858"; depth 169 ; known ; N/A GL192365.1 samtools variation 75131 75131 . . . alleles " G A"; frequencies " 0.627118644067797 0.372881355932203"; depth 59 ; known ; N/A GL192365.1 samtools variation 75187 75187 . . . alleles " G A"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; known ; N/A GL192365.1 samtools variation 75231 75231 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192365.1 samtools variation 90280 90280 . . . alleles " A G"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; known ; N/A GL192365.1 samtools variation 90395 90395 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192365.1 samtools variation 91397 91397 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 35 ; known ; N/A GL192365.1 samtools variation 91540 91540 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 38 ; known ; N/A GL192365.1 samtools variation 91737 91737 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192365.1 samtools variation 91852 91852 . . . alleles " A T"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL192365.1 samtools variation 91932 91932 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 42 ; unknown ; N/A GL192365.1 samtools variation 91934 91934 . . . alleles " A G"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; unknown ; N/A GL192365.1 samtools variation 98627 98627 . . . alleles " G A"; frequencies " 0.32258064516129 0.67741935483871"; depth 62 ; known ; N/A GL192365.1 samtools variation 99632 99632 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192365.1 samtools variation 103262 103262 . . . alleles " G A"; frequencies " 0.622641509433962 0.377358490566038"; depth 53 ; unknown ; N/A GL192365.1 samtools variation 104929 104929 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192365.1 samtools variation 111808 111808 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 24 ; known ; N/A GL192365.1 samtools variation 117432 117432 . . . alleles " C A"; frequencies " 0.758620689655172 0.241379310344828"; depth 58 ; known ; N/A GL192365.1 samtools variation 117716 117716 . . . alleles " G C"; frequencies " 0.2 0.8"; depth 45 ; known ; N/A GL192365.1 samtools variation 119667 119667 . . . alleles " A G"; frequencies " 0.328947368421053 0.671052631578947"; depth 76 ; unknown ; N/A GL192365.1 samtools variation 120795 120795 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192365.1 samtools variation 122527 122527 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192365.1 samtools variation 123335 123335 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL192365.1 samtools variation 126860 126860 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192365.1 samtools variation 127189 127189 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192365.1 samtools variation 127855 127855 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192365.1 samtools variation 129112 129112 . . . alleles " A C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192365.1 samtools variation 130631 130631 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192365.1 samtools variation 166486 166486 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192365.1 samtools variation 166500 166500 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192365.1 samtools variation 715183 715183 . . . alleles " A T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192365.1 samtools variation 715231 715231 . . . alleles " T G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192365.1 samtools variation 716839 716839 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192365.1 samtools variation 718128 718128 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192365.1 samtools variation 718162 718162 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192365.1 samtools variation 768712 768712 . . . alleles " C T"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; N/A GL192365.1 samtools variation 768872 768872 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 48 ; known ; N/A GL192365.1 samtools variation 813729 813729 . . . alleles " C G"; frequencies " 0.74468085106383 0.25531914893617"; depth 47 ; known ; N/A GL192365.1 samtools variation 2075898 2075898 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192365.1 samtools variation 2075903 2075903 . . . alleles " A C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192365.1 samtools variation 2077382 2077382 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192365.1 samtools variation 2211531 2211531 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192365.1 samtools variation 2226479 2226479 . . . alleles " C T"; frequencies " 0.783783783783784 0.216216216216216"; depth 148 ; unknown ; N/A GL192365.1 samtools variation 2616414 2616414 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192365.1 samtools variation 2681669 2681669 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; non-synonymous GL192365.1 samtools variation 2681707 2681707 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; synonymous GL192365.1 samtools variation 2691652 2691652 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192365.1 samtools variation 2691665 2691665 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192365.1 samtools variation 3348675 3348675 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192365.1 samtools variation 3350769 3350769 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192365.1 samtools variation 3365800 3365800 . . . alleles " C T"; frequencies " 0.634920634920635 0.365079365079365"; depth 63 ; unknown ; synonymous GL192365.1 samtools variation 3976545 3976545 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192366.1 samtools variation 544681 544681 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192366.1 samtools variation 546722 546722 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192366.1 samtools variation 549521 549521 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 60 ; unknown ; N/A GL192366.1 samtools variation 550507 550507 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192366.1 samtools variation 551619 551619 . . . alleles " G A"; frequencies " 0.674418604651163 0.325581395348837"; depth 86 ; unknown ; N/A GL192366.1 samtools variation 556180 556180 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192366.1 samtools variation 556466 556466 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL192366.1 samtools variation 557422 557422 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192366.1 samtools variation 566841 566841 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192366.1 samtools variation 569188 569188 . . . alleles " A C"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; N/A GL192366.1 samtools variation 610294 610294 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192366.1 samtools variation 644894 644894 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192366.1 samtools variation 646346 646346 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 30 ; known ; N/A GL192366.1 samtools variation 647167 647167 . . . alleles " T A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192366.1 samtools variation 651303 651303 . . . alleles " T A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192366.1 samtools variation 655652 655652 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192366.1 samtools variation 661374 661374 . . . alleles " T C"; frequencies " 0.22 0.76"; depth 50 ; known ; N/A GL192366.1 samtools variation 663114 663114 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 60 ; unknown ; N/A GL192366.1 samtools variation 664098 664098 . . . alleles " G C"; frequencies " 0.681818181818182 0.318181818181818"; depth 66 ; unknown ; N/A GL192366.1 samtools variation 664793 664793 . . . alleles " A G"; frequencies " 0.425531914893617 0.574468085106383"; depth 47 ; known ; N/A GL192366.1 samtools variation 665054 665054 . . . alleles " G A"; frequencies " 0.660847880299252 0.336658354114713"; depth 401 ; known ; synonymous GL192366.1 samtools variation 665096 665096 . . . alleles " G A"; frequencies " 0.679916317991632 0.320083682008368"; depth 478 ; known ; synonymous GL192366.1 samtools variation 668004 668004 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 52 ; unknown ; N/A GL192366.1 samtools variation 668485 668485 . . . alleles " C T"; frequencies " 0.646341463414634 0.353658536585366"; depth 82 ; known ; N/A GL192366.1 samtools variation 668982 668982 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192366.1 samtools variation 670206 670206 . . . alleles " C G"; frequencies " 0.605504587155963 0.394495412844037"; depth 109 ; known ; N/A GL192366.1 samtools variation 675267 675267 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192366.1 samtools variation 675848 675848 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 36 ; known ; N/A GL192366.1 samtools variation 675935 675935 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; N/A GL192366.1 samtools variation 678183 678183 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 28 ; known ; N/A GL192366.1 samtools variation 678279 678279 . . . alleles " T G"; frequencies " 0.58695652173913 0.41304347826087"; depth 46 ; unknown ; N/A GL192366.1 samtools variation 678391 678391 . . . alleles " G A"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; known ; N/A GL192366.1 samtools variation 679353 679353 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192366.1 samtools variation 679826 679826 . . . alleles " G A"; frequencies " 0.58695652173913 0.41304347826087"; depth 46 ; unknown ; N/A GL192366.1 samtools variation 695085 695085 . . . alleles " C A"; frequencies " 0.25 0.75"; depth 68 ; known ; N/A GL192366.1 samtools variation 737860 737860 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192366.1 samtools variation 796711 796711 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192366.1 samtools variation 818695 818695 . . . alleles " C T"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL192366.1 samtools variation 818975 818975 . . . alleles " G C"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL192366.1 samtools variation 948391 948391 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; synonymous GL192366.1 samtools variation 1020408 1020408 . . . alleles " G A"; frequencies " 0.405940594059406 0.594059405940594"; depth 101 ; known ; synonymous GL192366.1 samtools variation 1025527 1025527 . . . alleles " T C"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; known ; N/A GL192366.1 samtools variation 1051234 1051234 . . . alleles " T C"; frequencies " 0.630434782608696 0.369565217391304"; depth 46 ; known ; N/A GL192366.1 samtools variation 1051567 1051567 . . . alleles " A C"; frequencies " 0.272727272727273 0.727272727272727"; depth 66 ; known ; N/A GL192366.1 samtools variation 1052057 1052057 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; N/A GL192366.1 samtools variation 1078877 1078877 . . . alleles " C A"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL192366.1 samtools variation 1289506 1289506 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192366.1 samtools variation 1313497 1313497 . . . alleles " C A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192366.1 samtools variation 1313585 1313585 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192366.1 samtools variation 1467314 1467314 . . . alleles " A G"; frequencies " 0.741721854304636 0.258278145695364"; depth 453 ; unknown ; N/A GL192366.1 samtools variation 1483069 1483069 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192366.1 samtools variation 1490370 1490370 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192366.1 samtools variation 1671874 1671874 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 96 ; known ; N/A GL192366.1 samtools variation 1672420 1672420 . . . alleles " C T"; frequencies " 0.737179487179487 0.262820512820513"; depth 156 ; unknown ; N/A GL192366.1 samtools variation 1674160 1674160 . . . alleles " T A"; frequencies " 0.765060240963855 0.234939759036145"; depth 166 ; unknown ; N/A GL192366.1 samtools variation 1677825 1677825 . . . alleles " T A"; frequencies " 0.585585585585586 0.414414414414414"; depth 111 ; unknown ; N/A GL192366.1 samtools variation 1681136 1681136 . . . alleles " C A"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; known ; N/A GL192366.1 samtools variation 1686003 1686003 . . . alleles " G A"; frequencies " 0.767441860465116 0.232558139534884"; depth 129 ; unknown ; N/A GL192366.1 samtools variation 1689438 1689438 . . . alleles " C T"; frequencies " 0.576576576576577 0.423423423423423"; depth 222 ; unknown ; N/A GL192366.1 samtools variation 1691285 1691285 . . . alleles " T G"; frequencies " 0.799703264094956 0.200296735905045"; depth 674 ; unknown ; synonymous GL192366.1 samtools variation 1713080 1713080 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192366.1 samtools variation 1714278 1714278 . . . alleles " G T"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; unknown ; N/A GL192366.1 samtools variation 2098980 2098980 . . . alleles " G T"; frequencies " 0.758620689655172 0.241379310344828"; depth 87 ; unknown ; N/A GL192366.1 samtools variation 2099998 2099998 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL192366.1 samtools variation 2101905 2101905 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192366.1 samtools variation 2102272 2102272 . . . alleles " C A"; frequencies " 0.742424242424242 0.257575757575758"; depth 264 ; unknown ; N/A GL192366.1 samtools variation 2247500 2247500 . . . alleles " T G"; frequencies " 0.590909090909091 0.409090909090909"; depth 44 ; unknown ; N/A GL192366.1 samtools variation 2251304 2251304 . . . alleles " T A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192366.1 samtools variation 2251307 2251307 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192366.1 samtools variation 2252161 2252161 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192366.1 samtools variation 2253488 2253488 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 52 ; unknown ; synonymous GL192366.1 samtools variation 2253524 2253524 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 56 ; known ; synonymous GL192366.1 samtools variation 2253557 2253557 . . . alleles " C T"; frequencies " 0.245283018867925 0.754716981132076"; depth 53 ; known ; synonymous GL192366.1 samtools variation 2254559 2254559 . . . alleles " C T"; frequencies " 0.792307692307692 0.207692307692308"; depth 130 ; known ; synonymous GL192366.1 samtools variation 2255112 2255112 . . . alleles " G A"; frequencies " 0.576271186440678 0.423728813559322"; depth 118 ; unknown ; non-synonymous GL192366.1 samtools variation 2257205 2257205 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 65 ; unknown ; N/A GL192366.1 samtools variation 2258153 2258153 . . . alleles " A G"; frequencies " 0.796875 0.203125"; depth 64 ; unknown ; N/A GL192366.1 samtools variation 2281523 2281523 . . . alleles " G T"; frequencies " 0.784 0.216"; depth 125 ; unknown ; N/A GL192366.1 samtools variation 2282626 2282626 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192366.1 samtools variation 2284308 2284308 . . . alleles " T C"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL192366.1 samtools variation 2286658 2286658 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192366.1 samtools variation 2348885 2348885 . . . alleles " T G"; frequencies " 0.55 0.45"; depth 40 ; known ; N/A GL192366.1 samtools variation 2383990 2383990 . . . alleles " C G"; frequencies " 0.735849056603774 0.264150943396226"; depth 53 ; unknown ; N/A GL192366.1 samtools variation 2507573 2507573 . . . alleles " T A"; frequencies " 0.760869565217391 0.239130434782609"; depth 46 ; known ; N/A GL192366.1 samtools variation 2819553 2819553 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; synonymous GL192366.1 samtools variation 2981090 2981090 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL192366.1 samtools variation 3107708 3107708 . . . alleles " C T"; frequencies " 0.651515151515151 0.348484848484849"; depth 66 ; known ; synonymous GL192366.1 samtools variation 3123663 3123663 . . . alleles " A G"; frequencies " 0.716666666666667 0.283333333333333"; depth 60 ; unknown ; N/A GL192366.1 samtools variation 3123856 3123856 . . . alleles " T C"; frequencies " 0.787234042553192 0.212765957446809"; depth 94 ; unknown ; N/A GL192366.1 samtools variation 3702051 3702051 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192366.1 samtools variation 3776403 3776403 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192366.1 samtools variation 3798257 3798257 . . . alleles " G A"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; N/A GL192366.1 samtools variation 3812592 3812592 . . . alleles " C T"; frequencies " 0.798449612403101 0.2"; depth 645 ; known ; N/A GL192366.1 samtools variation 4072703 4072703 . . . alleles " C T"; frequencies " 0.790123456790123 0.209876543209877"; depth 81 ; unknown ; N/A GL192366.1 samtools variation 4103989 4103989 . . . alleles " T G"; frequencies " 0.525423728813559 0.474576271186441"; depth 59 ; unknown ; N/A GL192366.1 samtools variation 4104066 4104066 . . . alleles " G A"; frequencies " 0.661290322580645 0.338709677419355"; depth 62 ; unknown ; N/A GL192366.1 samtools variation 4104071 4104071 . . . alleles " T C"; frequencies " 0.655172413793103 0.344827586206897"; depth 58 ; unknown ; N/A GL192366.1 samtools variation 4104133 4104133 . . . alleles " G T"; frequencies " 0.652777777777778 0.347222222222222"; depth 72 ; unknown ; N/A GL192367.1 samtools variation 180 180 . . . alleles " G C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192367.1 samtools variation 193 193 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192367.1 samtools variation 13434 13434 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; known ; non-synonymous GL192367.1 samtools variation 17441 17441 . . . alleles " C A"; frequencies " 0.212121212121212 0.787878787878788"; depth 33 ; known ; N/A GL192367.1 samtools variation 18418 18418 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; non-synonymous GL192367.1 samtools variation 18682 18682 . . . alleles " G A"; frequencies " 0.767123287671233 0.232876712328767"; depth 73 ; known ; synonymous GL192367.1 samtools variation 19132 19132 . . . alleles " G A"; frequencies " 0.791044776119403 0.208955223880597"; depth 67 ; known ; non-synonymous GL192367.1 samtools variation 19150 19150 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; known ; non-synonymous GL192367.1 samtools variation 25934 25934 . . . alleles " T C"; frequencies " 0.564853556485356 0.435146443514644"; depth 239 ; known ; synonymous GL192367.1 samtools variation 29733 29733 . . . alleles " G C"; frequencies " 0.584656084656085 0.415343915343915"; depth 378 ; known ; N/A GL192367.1 samtools variation 30258 30258 . . . alleles " G A"; frequencies " 0.470967741935484 0.529032258064516"; depth 155 ; known ; N/A GL192367.1 samtools variation 33856 33856 . . . alleles " C T"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; known ; N/A GL192367.1 samtools variation 38704 38704 . . . alleles " G A"; frequencies " 0.555066079295154 0.444933920704846"; depth 227 ; known ; N/A GL192367.1 samtools variation 38761 38761 . . . alleles " G A"; frequencies " 0.568627450980392 0.431372549019608"; depth 204 ; known ; N/A GL192367.1 samtools variation 59455 59455 . . . alleles " G T"; frequencies " 0.554913294797688 0.445086705202312"; depth 173 ; known ; N/A GL192367.1 samtools variation 59752 59752 . . . alleles " T C"; frequencies " 0.457894736842105 0.542105263157895"; depth 190 ; known ; N/A GL192367.1 samtools variation 61803 61803 . . . alleles " C T"; frequencies " 0.694581280788177 0.305418719211823"; depth 203 ; known ; synonymous GL192367.1 samtools variation 69868 69868 . . . alleles " G T"; frequencies " 0.462857142857143 0.537142857142857"; depth 175 ; known ; N/A GL192367.1 samtools variation 70283 70283 . . . alleles " G A"; frequencies " 0.748091603053435 0.251908396946565"; depth 131 ; unknown ; N/A GL192367.1 samtools variation 72157 72157 . . . alleles " T C"; frequencies " 0.32 0.68"; depth 25 ; known ; non-synonymous GL192367.1 samtools variation 80998 80998 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192367.1 samtools variation 82781 82781 . . . alleles " T G"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; known ; synonymous GL192367.1 samtools variation 157715 157715 . . . alleles " G A"; frequencies " 0.797872340425532 0.202127659574468"; depth 94 ; unknown ; N/A GL192367.1 samtools variation 458133 458133 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL192367.1 samtools variation 524572 524572 . . . alleles " T C"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; synonymous GL192367.1 samtools variation 536069 536069 . . . alleles " T C"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; unknown ; N/A GL192367.1 samtools variation 537466 537466 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192367.1 samtools variation 678059 678059 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192367.1 samtools variation 713673 713673 . . . alleles " T C"; frequencies " 0.656716417910448 0.343283582089552"; depth 201 ; unknown ; synonymous GL192367.1 samtools variation 718696 718696 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192367.1 samtools variation 720897 720897 . . . alleles " A G"; frequencies " 0.775 0.225"; depth 160 ; unknown ; N/A GL192367.1 samtools variation 816408 816408 . . . alleles " T C"; frequencies " 0.202072538860104 0.797927461139896"; depth 193 ; unknown ; synonymous GL192367.1 samtools variation 818581 818581 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192367.1 samtools variation 820474 820474 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; unknown ; N/A GL192367.1 samtools variation 827803 827803 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL192367.1 samtools variation 828283 828283 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192367.1 samtools variation 833297 833297 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 72 ; unknown ; N/A GL192367.1 samtools variation 835786 835786 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL192367.1 samtools variation 836744 836744 . . . alleles " G A"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL192367.1 samtools variation 838294 838294 . . . alleles " T C"; frequencies " 0.517857142857143 0.482142857142857"; depth 112 ; unknown ; N/A GL192367.1 samtools variation 842799 842799 . . . alleles " C G"; frequencies " 0.586538461538462 0.413461538461538"; depth 104 ; unknown ; N/A GL192367.1 samtools variation 874415 874415 . . . alleles " A G"; frequencies " 0.205882352941176 0.794117647058823"; depth 34 ; unknown ; N/A GL192367.1 samtools variation 874849 874849 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192367.1 samtools variation 890424 890424 . . . alleles " A C"; frequencies " 0.4149377593361 0.5850622406639"; depth 482 ; unknown ; synonymous GL192367.1 samtools variation 890838 890838 . . . alleles " C T"; frequencies " 0.611028315946349 0.388971684053651"; depth 671 ; unknown ; synonymous GL192367.1 samtools variation 890913 890913 . . . alleles " C T"; frequencies " 0.766778523489933 0.233221476510067"; depth 596 ; unknown ; synonymous GL192367.1 samtools variation 891370 891370 . . . alleles " C G"; frequencies " 0.63353115727003 0.36646884272997"; depth 674 ; unknown ; N/A GL192367.1 samtools variation 891426 891426 . . . alleles " G A"; frequencies " 0.631313131313131 0.368686868686869"; depth 396 ; unknown ; N/A GL192367.1 samtools variation 891427 891427 . . . alleles " C T"; frequencies " 0.631043256997455 0.368956743002545"; depth 393 ; unknown ; N/A GL192367.1 samtools variation 910146 910146 . . . alleles " C T"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192367.1 samtools variation 910197 910197 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 36 ; unknown ; N/A GL192367.1 samtools variation 912575 912575 . . . alleles " C T"; frequencies " 0.285261489698891 0.714738510301109"; depth 1262 ; unknown ; N/A GL192367.1 samtools variation 912609 912609 . . . alleles " A C"; frequencies " 0.278726708074534 0.720496894409938"; depth 1288 ; unknown ; N/A GL192367.1 samtools variation 913217 913217 . . . alleles " G A"; frequencies " 0.623188405797101 0.376811594202899"; depth 552 ; unknown ; N/A GL192367.1 samtools variation 913218 913218 . . . alleles " C T"; frequencies " 0.630630630630631 0.369369369369369"; depth 555 ; unknown ; N/A GL192367.1 samtools variation 913289 913289 . . . alleles " C T"; frequencies " 0.739316239316239 0.260683760683761"; depth 936 ; unknown ; N/A GL192367.1 samtools variation 913345 913345 . . . alleles " C A"; frequencies " 0.401486988847584 0.598513011152416"; depth 807 ; unknown ; N/A GL192367.1 samtools variation 913549 913549 . . . alleles " A G"; frequencies " 0.504950495049505 0.495049504950495"; depth 606 ; unknown ; synonymous GL192367.1 samtools variation 914307 914307 . . . alleles " C T"; frequencies " 0.642553191489362 0.357446808510638"; depth 470 ; unknown ; non-synonymous GL192367.1 samtools variation 914550 914550 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192367.1 samtools variation 914696 914696 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192367.1 samtools variation 915445 915445 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192367.1 samtools variation 918179 918179 . . . alleles " G C"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192367.1 samtools variation 919136 919136 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192367.1 samtools variation 919269 919269 . . . alleles " C T"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL192367.1 samtools variation 919341 919341 . . . alleles " A G"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192367.1 samtools variation 919369 919369 . . . alleles " T G"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL192367.1 samtools variation 919410 919410 . . . alleles " A C"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192367.1 samtools variation 919558 919558 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192367.1 samtools variation 919936 919936 . . . alleles " T G"; frequencies " 0.426229508196721 0.573770491803279"; depth 61 ; known ; N/A GL192367.1 samtools variation 919986 919986 . . . alleles " C T"; frequencies " 0.519230769230769 0.480769230769231"; depth 52 ; unknown ; N/A GL192367.1 samtools variation 920673 920673 . . . alleles " T G"; frequencies " 0.384615384615385 0.615384615384615"; depth 52 ; unknown ; N/A GL192367.1 samtools variation 926284 926284 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192367.1 samtools variation 926294 926294 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192367.1 samtools variation 1171547 1171547 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192367.1 samtools variation 2310077 2310077 . . . alleles " G A"; frequencies " 0.782051282051282 0.217948717948718"; depth 78 ; unknown ; N/A GL192367.1 samtools variation 2322154 2322154 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL192367.1 samtools variation 2322235 2322235 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; non-synonymous GL192367.1 samtools variation 2322245 2322245 . . . alleles " C T"; frequencies " 0.244444444444444 0.755555555555556"; depth 45 ; unknown ; synonymous GL192367.1 samtools variation 2327346 2327346 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; synonymous GL192367.1 samtools variation 2347991 2347991 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; synonymous GL192367.1 samtools variation 2376095 2376095 . . . alleles " C A"; frequencies " 0.402985074626866 0.597014925373134"; depth 67 ; unknown ; synonymous GL192367.1 samtools variation 2589498 2589498 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 40 ; known ; synonymous GL192367.1 samtools variation 2642834 2642834 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; synonymous GL192367.1 samtools variation 2750959 2750959 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; unknown ; synonymous GL192367.1 samtools variation 2751050 2751050 . . . alleles " G A"; frequencies " 0.36 0.64"; depth 25 ; unknown ; non-synonymous GL192367.1 samtools variation 3192017 3192017 . . . alleles " A C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; synonymous GL192367.1 samtools variation 3193465 3193465 . . . alleles " G A"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; synonymous GL192367.1 samtools variation 3199143 3199143 . . . alleles " A G"; frequencies " 0.243243243243243 0.756756756756757"; depth 37 ; unknown ; synonymous GL192367.1 samtools variation 3218884 3218884 . . . alleles " C T"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; unknown ; synonymous GL192367.1 samtools variation 3756687 3756687 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192367.1 samtools variation 3756914 3756914 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192368.1 samtools variation 26084 26084 . . . alleles " G A"; frequencies " 0.783132530120482 0.216867469879518"; depth 83 ; unknown ; N/A GL192368.1 samtools variation 26306 26306 . . . alleles " T C"; frequencies " 0.793103448275862 0.206896551724138"; depth 145 ; unknown ; N/A GL192368.1 samtools variation 26512 26512 . . . alleles " T C"; frequencies " 0.736111111111111 0.263888888888889"; depth 72 ; unknown ; N/A GL192368.1 samtools variation 27113 27113 . . . alleles " T C"; frequencies " 0.706521739130435 0.293478260869565"; depth 92 ; unknown ; N/A GL192368.1 samtools variation 28729 28729 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192368.1 samtools variation 45005 45005 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192368.1 samtools variation 51488 51488 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192368.1 samtools variation 115025 115025 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192368.1 samtools variation 123151 123151 . . . alleles " G A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192368.1 samtools variation 126991 126991 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192368.1 samtools variation 137535 137535 . . . alleles " G C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192368.1 samtools variation 138540 138540 . . . alleles " C T"; frequencies " 0.530612244897959 0.469387755102041"; depth 49 ; unknown ; N/A GL192368.1 samtools variation 138799 138799 . . . alleles " G A"; frequencies " 0.784313725490196 0.215686274509804"; depth 153 ; known ; N/A GL192368.1 samtools variation 140017 140017 . . . alleles " C T"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; known ; N/A GL192368.1 samtools variation 140636 140636 . . . alleles " C T"; frequencies " 0.746031746031746 0.253968253968254"; depth 126 ; unknown ; N/A GL192368.1 samtools variation 140886 140886 . . . alleles " G A"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; unknown ; N/A GL192368.1 samtools variation 145648 145648 . . . alleles " A G"; frequencies " 0.208333333333333 0.791666666666667"; depth 96 ; known ; N/A GL192368.1 samtools variation 145723 145723 . . . alleles " C T"; frequencies " 0.515151515151515 0.484848484848485"; depth 99 ; unknown ; N/A GL192368.1 samtools variation 148712 148712 . . . alleles " C T"; frequencies " 0.610169491525424 0.389830508474576"; depth 59 ; unknown ; synonymous GL192368.1 samtools variation 148912 148912 . . . alleles " C T"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; unknown ; non-synonymous GL192368.1 samtools variation 150909 150909 . . . alleles " G A"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL192368.1 samtools variation 152032 152032 . . . alleles " G T"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; non-synonymous GL192368.1 samtools variation 152192 152192 . . . alleles " G C"; frequencies " 0.2 0.8"; depth 45 ; known ; non-synonymous GL192368.1 samtools variation 187147 187147 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192368.1 samtools variation 188908 188908 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192368.1 samtools variation 202249 202249 . . . alleles " T G"; frequencies " 0.298701298701299 0.701298701298701"; depth 77 ; known ; N/A GL192368.1 samtools variation 205615 205615 . . . alleles " G A"; frequencies " 0.753846153846154 0.246153846153846"; depth 65 ; unknown ; N/A GL192368.1 samtools variation 207903 207903 . . . alleles " C T"; frequencies " 0.741176470588235 0.258823529411765"; depth 85 ; unknown ; N/A GL192368.1 samtools variation 209674 209674 . . . alleles " T C"; frequencies " 0.240740740740741 0.759259259259259"; depth 162 ; known ; N/A GL192368.1 samtools variation 209766 209766 . . . alleles " A C"; frequencies " 0.447004608294931 0.552995391705069"; depth 217 ; known ; N/A GL192368.1 samtools variation 210647 210647 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 68 ; known ; N/A GL192368.1 samtools variation 211594 211594 . . . alleles " G A"; frequencies " 0.637755102040816 0.362244897959184"; depth 196 ; known ; N/A GL192368.1 samtools variation 212557 212557 . . . alleles " G C"; frequencies " 0.725806451612903 0.274193548387097"; depth 248 ; unknown ; N/A GL192368.1 samtools variation 213736 213736 . . . alleles " G A"; frequencies " 0.524096385542169 0.475903614457831"; depth 332 ; known ; N/A GL192368.1 samtools variation 224404 224404 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192368.1 samtools variation 237931 237931 . . . alleles " T C"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192368.1 samtools variation 238266 238266 . . . alleles " T A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192368.1 samtools variation 573993 573993 . . . alleles " A T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192368.1 samtools variation 574176 574176 . . . alleles " T C"; frequencies " 0.243243243243243 0.756756756756757"; depth 37 ; known ; N/A GL192368.1 samtools variation 574206 574206 . . . alleles " C T"; frequencies " 0.763636363636364 0.236363636363636"; depth 55 ; known ; N/A GL192368.1 samtools variation 574246 574246 . . . alleles " G A"; frequencies " 0.744186046511628 0.255813953488372"; depth 43 ; known ; N/A GL192368.1 samtools variation 574786 574786 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192368.1 samtools variation 994528 994528 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192368.1 samtools variation 994927 994927 . . . alleles " G A"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; synonymous GL192368.1 samtools variation 995456 995456 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192368.1 samtools variation 995471 995471 . . . alleles " T A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192368.1 samtools variation 995591 995591 . . . alleles " T C"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; known ; N/A GL192368.1 samtools variation 995649 995649 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192368.1 samtools variation 995781 995781 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192368.1 samtools variation 996247 996247 . . . alleles " G A"; frequencies " 0.398496240601504 0.601503759398496"; depth 266 ; known ; N/A GL192368.1 samtools variation 997356 997356 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192368.1 samtools variation 998350 998350 . . . alleles " G A"; frequencies " 0.404761904761905 0.595238095238095"; depth 84 ; known ; N/A GL192368.1 samtools variation 998476 998476 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 50 ; known ; N/A GL192368.1 samtools variation 998686 998686 . . . alleles " A C"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL192368.1 samtools variation 998803 998803 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; known ; N/A GL192368.1 samtools variation 998911 998911 . . . alleles " G T"; frequencies " 0.547413793103448 0.452586206896552"; depth 464 ; unknown ; N/A GL192368.1 samtools variation 999358 999358 . . . alleles " C T"; frequencies " 0.510373443983402 0.489626556016597"; depth 241 ; known ; N/A GL192368.1 samtools variation 999860 999860 . . . alleles " A G"; frequencies " 0.510309278350515 0.489690721649485"; depth 194 ; known ; N/A GL192368.1 samtools variation 1000779 1000779 . . . alleles " G A"; frequencies " 0.554545454545455 0.445454545454545"; depth 110 ; known ; N/A GL192368.1 samtools variation 1002066 1002066 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192368.1 samtools variation 1003539 1003539 . . . alleles " C T"; frequencies " 0.354838709677419 0.645161290322581"; depth 62 ; known ; N/A GL192368.1 samtools variation 1003972 1003972 . . . alleles " T C"; frequencies " 0.36 0.64"; depth 25 ; known ; N/A GL192368.1 samtools variation 1004017 1004017 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192368.1 samtools variation 1004034 1004034 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192368.1 samtools variation 1004066 1004066 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL192368.1 samtools variation 1004685 1004685 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; known ; N/A GL192368.1 samtools variation 1005020 1005020 . . . alleles " G C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192368.1 samtools variation 1005136 1005136 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192368.1 samtools variation 1005188 1005188 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192368.1 samtools variation 1005646 1005646 . . . alleles " C T"; frequencies " 0.484444444444444 0.515555555555556"; depth 450 ; known ; non-synonymous GL192368.1 samtools variation 1006606 1006606 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192368.1 samtools variation 1006608 1006608 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192368.1 samtools variation 1009467 1009467 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 52 ; known ; N/A GL192368.1 samtools variation 1012043 1012043 . . . alleles " C T"; frequencies " 0.446428571428571 0.553571428571429"; depth 56 ; known ; N/A GL192368.1 samtools variation 1012083 1012083 . . . alleles " C T"; frequencies " 0.627906976744186 0.372093023255814"; depth 43 ; known ; N/A GL192368.1 samtools variation 1012468 1012468 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 34 ; known ; N/A GL192368.1 samtools variation 1013305 1013305 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL192368.1 samtools variation 1014795 1014795 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192368.1 samtools variation 1017071 1017071 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192368.1 samtools variation 1018692 1018692 . . . alleles " G A"; frequencies " 0.579505300353357 0.420494699646643"; depth 283 ; known ; synonymous GL192368.1 samtools variation 1021768 1021768 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192368.1 samtools variation 1021977 1021977 . . . alleles " A T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL192368.1 samtools variation 1022237 1022237 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192368.1 samtools variation 1024375 1024375 . . . alleles " T C"; frequencies " 0.48951048951049 0.510489510489511"; depth 143 ; known ; non-synonymous GL192368.1 samtools variation 1026320 1026320 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192368.1 samtools variation 1027195 1027195 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192368.1 samtools variation 1034657 1034657 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL192368.1 samtools variation 1036622 1036622 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192368.1 samtools variation 1036692 1036692 . . . alleles " T A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192368.1 samtools variation 1050970 1050970 . . . alleles " A G"; frequencies " 0.566037735849057 0.433962264150943"; depth 53 ; known ; N/A GL192368.1 samtools variation 1051063 1051063 . . . alleles " A G"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; known ; N/A GL192368.1 samtools variation 1209376 1209376 . . . alleles " T C"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192368.1 samtools variation 1209495 1209495 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 69 ; unknown ; N/A GL192368.1 samtools variation 1336913 1336913 . . . alleles " T C"; frequencies " 0.702222222222222 0.297777777777778"; depth 450 ; unknown ; N/A GL192368.1 samtools variation 1338342 1338342 . . . alleles " C T"; frequencies " 0.664658634538153 0.329317269076305"; depth 498 ; unknown ; N/A GL192368.1 samtools variation 1338408 1338408 . . . alleles " G T"; frequencies " 0.20508166969147 0.79491833030853"; depth 551 ; known ; N/A GL192368.1 samtools variation 1340617 1340617 . . . alleles " C T"; frequencies " 0.513761467889908 0.486238532110092"; depth 109 ; unknown ; N/A GL192368.1 samtools variation 1576144 1576144 . . . alleles " A C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192368.1 samtools variation 1581261 1581261 . . . alleles " G A"; frequencies " 0.53125 0.46875"; depth 32 ; known ; N/A GL192368.1 samtools variation 1588040 1588040 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192368.1 samtools variation 1589668 1589668 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 39 ; known ; N/A GL192368.1 samtools variation 1592566 1592566 . . . alleles " A G"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192368.1 samtools variation 1592675 1592675 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192368.1 samtools variation 1594332 1594332 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192368.1 samtools variation 1608247 1608247 . . . alleles " T C"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; known ; synonymous GL192368.1 samtools variation 1614570 1614570 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; non-synonymous GL192368.1 samtools variation 2003295 2003295 . . . alleles " G A"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; known ; N/A GL192368.1 samtools variation 2003370 2003370 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; synonymous GL192368.1 samtools variation 2003506 2003506 . . . alleles " G A"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; known ; non-synonymous GL192368.1 samtools variation 2086563 2086563 . . . alleles " A C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192368.1 samtools variation 2171307 2171307 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192368.1 samtools variation 2172162 2172162 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL192368.1 samtools variation 2172388 2172388 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL192368.1 samtools variation 2172598 2172598 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; unknown ; N/A GL192368.1 samtools variation 2178484 2178484 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 104 ; known ; synonymous GL192368.1 samtools variation 2188841 2188841 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192368.1 samtools variation 2193620 2193620 . . . alleles " C G"; frequencies " 0.751243781094527 0.248756218905473"; depth 201 ; known ; synonymous GL192368.1 samtools variation 2199605 2199605 . . . alleles " T C"; frequencies " 0.595652173913043 0.404347826086957"; depth 230 ; known ; synonymous GL192368.1 samtools variation 2203513 2203513 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 130 ; known ; synonymous GL192368.1 samtools variation 2391476 2391476 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192368.1 samtools variation 2407331 2407331 . . . alleles " A G"; frequencies " 0.490384615384615 0.509615384615385"; depth 104 ; unknown ; synonymous GL192368.1 samtools variation 2407460 2407460 . . . alleles " C T"; frequencies " 0.58273381294964 0.41726618705036"; depth 139 ; unknown ; synonymous GL192368.1 samtools variation 2443072 2443072 . . . alleles " G A"; frequencies " 0.263157894736842 0.736842105263158"; depth 380 ; known ; N/A GL192368.1 samtools variation 2443241 2443241 . . . alleles " C T"; frequencies " 0.416186556927298 0.583813443072702"; depth 3645 ; unknown ; synonymous GL192368.1 samtools variation 2446228 2446228 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 48 ; unknown ; N/A GL192368.1 samtools variation 2453529 2453529 . . . alleles " G A"; frequencies " 0.790419161676647 0.209580838323353"; depth 167 ; known ; N/A GL192368.1 samtools variation 2453758 2453758 . . . alleles " A G"; frequencies " 0.725490196078431 0.274509803921569"; depth 51 ; known ; N/A GL192368.1 samtools variation 2454430 2454430 . . . alleles " C T"; frequencies " 0.693333333333333 0.306666666666667"; depth 150 ; known ; N/A GL192368.1 samtools variation 2506362 2506362 . . . alleles " G A"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; known ; N/A GL192368.1 samtools variation 2507128 2507128 . . . alleles " C T"; frequencies " 0.54 0.46"; depth 50 ; known ; synonymous GL192368.1 samtools variation 2507308 2507308 . . . alleles " A G"; frequencies " 0.511111111111111 0.488888888888889"; depth 45 ; known ; synonymous GL192368.1 samtools variation 2511564 2511564 . . . alleles " T C"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; synonymous GL192368.1 samtools variation 2539386 2539386 . . . alleles " G C"; frequencies " 0.725 0.275"; depth 40 ; unknown ; non-synonymous GL192368.1 samtools variation 2546758 2546758 . . . alleles " T A"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; known ; N/A GL192368.1 samtools variation 2547361 2547361 . . . alleles " C T"; frequencies " 0.759036144578313 0.240963855421687"; depth 83 ; unknown ; N/A GL192368.1 samtools variation 2547914 2547914 . . . alleles " T A"; frequencies " 0.76 0.24"; depth 75 ; unknown ; N/A GL192368.1 samtools variation 2547958 2547958 . . . alleles " T C"; frequencies " 0.640449438202247 0.359550561797753"; depth 89 ; unknown ; N/A GL192368.1 samtools variation 2569113 2569113 . . . alleles " C T"; frequencies " 0.798561151079137 0.201438848920863"; depth 139 ; unknown ; non-synonymous GL192368.1 samtools variation 2578434 2578434 . . . alleles " G C"; frequencies " 0.697674418604651 0.302325581395349"; depth 43 ; unknown ; N/A GL192368.1 samtools variation 3077729 3077729 . . . alleles " T C"; frequencies " 0.627118644067797 0.372881355932203"; depth 59 ; unknown ; N/A GL192368.1 samtools variation 3086660 3086660 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 48 ; unknown ; N/A GL192368.1 samtools variation 3289439 3289439 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL192368.1 samtools variation 3368759 3368759 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192368.1 samtools variation 3368783 3368783 . . . alleles " C A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192368.1 samtools variation 3428251 3428251 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192368.1 samtools variation 3429356 3429356 . . . alleles " A C"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; N/A GL192368.1 samtools variation 3432366 3432366 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192369.1 samtools variation 191981 191981 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192369.1 samtools variation 207354 207354 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192369.1 samtools variation 255273 255273 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192369.1 samtools variation 256547 256547 . . . alleles " G A"; frequencies " 0.525974025974026 0.474025974025974"; depth 308 ; known ; N/A GL192369.1 samtools variation 260101 260101 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192369.1 samtools variation 300027 300027 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL192369.1 samtools variation 312743 312743 . . . alleles " G C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192369.1 samtools variation 315513 315513 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192369.1 samtools variation 328650 328650 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192369.1 samtools variation 335817 335817 . . . alleles " T C"; frequencies " 0.450704225352113 0.549295774647887"; depth 71 ; unknown ; synonymous GL192369.1 samtools variation 363683 363683 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192369.1 samtools variation 367358 367358 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192369.1 samtools variation 367979 367979 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192369.1 samtools variation 389744 389744 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; non-synonymous GL192369.1 samtools variation 395234 395234 . . . alleles " C T"; frequencies " 0.338983050847458 0.661016949152542"; depth 59 ; known ; N/A GL192369.1 samtools variation 517154 517154 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; synonymous GL192369.1 samtools variation 526906 526906 . . . alleles " G A"; frequencies " 0.647668393782383 0.341968911917098"; depth 193 ; known ; non-synonymous GL192369.1 samtools variation 571085 571085 . . . alleles " C T"; frequencies " 0.663265306122449 0.336734693877551"; depth 196 ; unknown ; synonymous GL192369.1 samtools variation 577382 577382 . . . alleles " T G"; frequencies " 0.693693693693694 0.306306306306306"; depth 111 ; known ; synonymous GL192369.1 samtools variation 577854 577854 . . . alleles " G C"; frequencies " 0.621301775147929 0.378698224852071"; depth 169 ; unknown ; non-synonymous GL192369.1 samtools variation 681278 681278 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192369.1 samtools variation 688307 688307 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; synonymous GL192369.1 samtools variation 689636 689636 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; synonymous GL192369.1 samtools variation 704578 704578 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 60 ; unknown ; N/A GL192369.1 samtools variation 706105 706105 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 87 ; known ; non-synonymous GL192369.1 samtools variation 710814 710814 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192369.1 samtools variation 710894 710894 . . . alleles " G C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL192369.1 samtools variation 721769 721769 . . . alleles " T C"; frequencies " 0.67 0.33"; depth 100 ; unknown ; N/A GL192369.1 samtools variation 841705 841705 . . . alleles " C T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; synonymous GL192369.1 samtools variation 851833 851833 . . . alleles " G T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192369.1 samtools variation 852018 852018 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192369.1 samtools variation 852459 852459 . . . alleles " A C"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL192369.1 samtools variation 852804 852804 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192369.1 samtools variation 853107 853107 . . . alleles " G A"; frequencies " 0.472727272727273 0.527272727272727"; depth 55 ; unknown ; N/A GL192369.1 samtools variation 853781 853781 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192369.1 samtools variation 854829 854829 . . . alleles " C T"; frequencies " 0.434782608695652 0.565217391304348"; depth 46 ; unknown ; synonymous GL192369.1 samtools variation 855001 855001 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192369.1 samtools variation 857419 857419 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192369.1 samtools variation 857699 857699 . . . alleles " G A"; frequencies " 0.792307692307692 0.207692307692308"; depth 130 ; unknown ; synonymous GL192369.1 samtools variation 1067477 1067477 . . . alleles " T C"; frequencies " 0.797979797979798 0.202020202020202"; depth 99 ; known ; N/A GL192369.1 samtools variation 1067604 1067604 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 152 ; known ; N/A GL192369.1 samtools variation 1068368 1068368 . . . alleles " G C"; frequencies " 0.564102564102564 0.435897435897436"; depth 39 ; known ; N/A GL192369.1 samtools variation 1068577 1068577 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 44 ; unknown ; N/A GL192369.1 samtools variation 1068682 1068682 . . . alleles " T C"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192369.1 samtools variation 1068972 1068972 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL192369.1 samtools variation 1069259 1069259 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192369.1 samtools variation 1069260 1069260 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192369.1 samtools variation 1069646 1069646 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; known ; N/A GL192369.1 samtools variation 1069661 1069661 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; N/A GL192369.1 samtools variation 1069838 1069838 . . . alleles " T C"; frequencies " 0.448979591836735 0.551020408163265"; depth 49 ; known ; N/A GL192369.1 samtools variation 1070170 1070170 . . . alleles " A G"; frequencies " 0.72992700729927 0.27007299270073"; depth 137 ; unknown ; N/A GL192369.1 samtools variation 1070212 1070212 . . . alleles " A G"; frequencies " 0.486301369863014 0.513698630136986"; depth 146 ; known ; N/A GL192369.1 samtools variation 1071359 1071359 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; synonymous GL192369.1 samtools variation 1072843 1072843 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192369.1 samtools variation 1073787 1073787 . . . alleles " G A"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; synonymous GL192369.1 samtools variation 1073922 1073922 . . . alleles " G A"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; known ; synonymous GL192369.1 samtools variation 1074357 1074357 . . . alleles " G A"; frequencies " 0.701298701298701 0.298701298701299"; depth 77 ; known ; synonymous GL192369.1 samtools variation 1390277 1390277 . . . alleles " A T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192369.1 samtools variation 1390382 1390382 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL192369.1 samtools variation 1390587 1390587 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192369.1 samtools variation 1390604 1390604 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192369.1 samtools variation 1391006 1391006 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192369.1 samtools variation 1391266 1391266 . . . alleles " T C"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192369.1 samtools variation 1392723 1392723 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 36 ; unknown ; N/A GL192369.1 samtools variation 1392757 1392757 . . . alleles " A T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192369.1 samtools variation 1394327 1394327 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192369.1 samtools variation 1394608 1394608 . . . alleles " T G"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192369.1 samtools variation 1394624 1394624 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192369.1 samtools variation 1396334 1396334 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192369.1 samtools variation 1507753 1507753 . . . alleles " A C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192369.1 samtools variation 1544024 1544024 . . . alleles " G C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192369.1 samtools variation 1547014 1547014 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192369.1 samtools variation 1554925 1554925 . . . alleles " A C"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192369.1 samtools variation 1554928 1554928 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL192369.1 samtools variation 1591592 1591592 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192369.1 samtools variation 1604455 1604455 . . . alleles " C T"; frequencies " 0.369565217391304 0.630434782608696"; depth 46 ; unknown ; N/A GL192369.1 samtools variation 1680292 1680292 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 108 ; unknown ; N/A GL192369.1 samtools variation 1726543 1726543 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; synonymous GL192369.1 samtools variation 1726621 1726621 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; synonymous GL192369.1 samtools variation 1744325 1744325 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; synonymous GL192369.1 samtools variation 1883627 1883627 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192369.1 samtools variation 1896975 1896975 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192369.1 samtools variation 1905987 1905987 . . . alleles " G T"; frequencies " 0.653846153846154 0.346153846153846"; depth 52 ; unknown ; non-synonymous GL192369.1 samtools variation 1909549 1909549 . . . alleles " G C"; frequencies " 0.753846153846154 0.246153846153846"; depth 65 ; unknown ; N/A GL192369.1 samtools variation 1909750 1909750 . . . alleles " T C"; frequencies " 0.654761904761905 0.345238095238095"; depth 84 ; known ; N/A GL192369.1 samtools variation 1909803 1909803 . . . alleles " C T"; frequencies " 0.66304347826087 0.33695652173913"; depth 92 ; unknown ; N/A GL192369.1 samtools variation 1914469 1914469 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL192369.1 samtools variation 1914644 1914644 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192369.1 samtools variation 1915555 1915555 . . . alleles " T C"; frequencies " 0.494047619047619 0.505952380952381"; depth 168 ; unknown ; N/A GL192369.1 samtools variation 2186194 2186194 . . . alleles " A G"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; unknown ; non-synonymous GL192369.1 samtools variation 2186465 2186465 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192369.1 samtools variation 2319463 2319463 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192369.1 samtools variation 2625574 2625574 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; non-synonymous GL192369.1 samtools variation 2625815 2625815 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192369.1 samtools variation 2626155 2626155 . . . alleles " C T"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; unknown ; N/A GL192369.1 samtools variation 2627201 2627201 . . . alleles " G T"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192369.1 samtools variation 2627425 2627425 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192369.1 samtools variation 2630592 2630592 . . . alleles " C A"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; unknown ; N/A GL192369.1 samtools variation 2631262 2631262 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192369.1 samtools variation 2631289 2631289 . . . alleles " A G"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL192369.1 samtools variation 2631377 2631377 . . . alleles " C T"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL192369.1 samtools variation 2655163 2655163 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192369.1 samtools variation 2705710 2705710 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192369.1 samtools variation 2709319 2709319 . . . alleles " A C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192369.1 samtools variation 2709320 2709320 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192369.1 samtools variation 2716083 2716083 . . . alleles " T C"; frequencies " 0.793103448275862 0.206896551724138"; depth 145 ; unknown ; synonymous GL192369.1 samtools variation 2738823 2738823 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192369.1 samtools variation 2743149 2743149 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192369.1 samtools variation 2847727 2847727 . . . alleles " G T"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL192369.1 samtools variation 2877970 2877970 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192369.1 samtools variation 2966989 2966989 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192369.1 samtools variation 2967112 2967112 . . . alleles " T C"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL192369.1 samtools variation 3026402 3026402 . . . alleles " T C"; frequencies " 0.735849056603774 0.264150943396226"; depth 53 ; known ; N/A GL192369.1 samtools variation 3034592 3034592 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192369.1 samtools variation 3068936 3068936 . . . alleles " A G"; frequencies " 0.44 0.56"; depth 25 ; known ; N/A GL192369.1 samtools variation 3075662 3075662 . . . alleles " G T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192369.1 samtools variation 3105090 3105090 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192369.1 samtools variation 3113150 3113150 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192369.1 samtools variation 3115166 3115166 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192369.1 samtools variation 3129176 3129176 . . . alleles " C G"; frequencies " 0.650887573964497 0.349112426035503"; depth 169 ; unknown ; N/A GL192369.1 samtools variation 3133759 3133759 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192369.1 samtools variation 3145037 3145037 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192369.1 samtools variation 3145383 3145383 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192369.1 samtools variation 3147265 3147265 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192369.1 samtools variation 3147746 3147746 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192369.1 samtools variation 3153339 3153339 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192369.1 samtools variation 3160248 3160248 . . . alleles " A G"; frequencies " 0.709090909090909 0.290909090909091"; depth 55 ; unknown ; N/A GL192369.1 samtools variation 3160376 3160376 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 84 ; known ; N/A GL192369.1 samtools variation 3161047 3161047 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192369.1 samtools variation 3162275 3162275 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 32 ; unknown ; N/A GL192369.1 samtools variation 3282003 3282003 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192369.1 samtools variation 3288561 3288561 . . . alleles " C T"; frequencies " 0.781818181818182 0.218181818181818"; depth 110 ; unknown ; N/A GL192369.1 samtools variation 3289490 3289490 . . . alleles " A G"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; N/A GL192369.1 samtools variation 3299963 3299963 . . . alleles " G C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192369.1 samtools variation 3302293 3302293 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 30 ; known ; N/A GL192369.1 samtools variation 3306246 3306246 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192369.1 samtools variation 3306705 3306705 . . . alleles " A C"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; unknown ; N/A GL192369.1 samtools variation 3529059 3529059 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192370.1 samtools variation 169119 169119 . . . alleles " C T"; frequencies " 0.323076923076923 0.676923076923077"; depth 65 ; unknown ; synonymous GL192370.1 samtools variation 202960 202960 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192370.1 samtools variation 1293193 1293193 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192370.1 samtools variation 1293196 1293196 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192370.1 samtools variation 1294662 1294662 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192370.1 samtools variation 1296006 1296006 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192370.1 samtools variation 1296152 1296152 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192370.1 samtools variation 1297368 1297368 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192370.1 samtools variation 1297574 1297574 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192370.1 samtools variation 1297616 1297616 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192370.1 samtools variation 1298149 1298149 . . . alleles " G T"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; known ; N/A GL192370.1 samtools variation 1900062 1900062 . . . alleles " A G"; frequencies " 0.206349206349206 0.793650793650794"; depth 63 ; known ; non-synonymous GL192370.1 samtools variation 2120961 2120961 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192370.1 samtools variation 2124969 2124969 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192370.1 samtools variation 2168962 2168962 . . . alleles " T C"; frequencies " 0.46 0.54"; depth 800 ; unknown ; N/A GL192370.1 samtools variation 2172725 2172725 . . . alleles " G C"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL192370.1 samtools variation 2194927 2194927 . . . alleles " C A"; frequencies " 0.224537037037037 0.774305555555556"; depth 864 ; known ; N/A GL192370.1 samtools variation 2195072 2195072 . . . alleles " G A"; frequencies " 0.569948186528497 0.430051813471503"; depth 386 ; unknown ; N/A GL192370.1 samtools variation 2195093 2195093 . . . alleles " C T"; frequencies " 0.548302872062663 0.451697127937337"; depth 383 ; unknown ; N/A GL192370.1 samtools variation 2195354 2195354 . . . alleles " A T"; frequencies " 0.268240343347639 0.731759656652361"; depth 466 ; known ; N/A GL192370.1 samtools variation 2195922 2195922 . . . alleles " A G"; frequencies " 0.367021276595745 0.632978723404255"; depth 188 ; known ; N/A GL192370.1 samtools variation 2196567 2196567 . . . alleles " A G"; frequencies " 0.393258426966292 0.606741573033708"; depth 89 ; known ; N/A GL192370.1 samtools variation 2197213 2197213 . . . alleles " C T"; frequencies " 0.588343558282209 0.411656441717791"; depth 1630 ; unknown ; N/A GL192370.1 samtools variation 2197287 2197287 . . . alleles " A G"; frequencies " 0.631185807656396 0.368814192343604"; depth 1071 ; unknown ; N/A GL192370.1 samtools variation 2197636 2197636 . . . alleles " G A"; frequencies " 0.707612456747405 0.292387543252595"; depth 578 ; unknown ; N/A GL192370.1 samtools variation 2197742 2197742 . . . alleles " C T"; frequencies " 0.643577673167451 0.356422326832549"; depth 1487 ; unknown ; N/A GL192370.1 samtools variation 2198076 2198076 . . . alleles " G A"; frequencies " 0.548265460030166 0.451734539969834"; depth 1326 ; known ; N/A GL192370.1 samtools variation 2198307 2198307 . . . alleles " C A"; frequencies " 0.522179974651457 0.477820025348542"; depth 789 ; known ; N/A GL192370.1 samtools variation 2198505 2198505 . . . alleles " C A"; frequencies " 0.608225108225108 0.391774891774892"; depth 924 ; unknown ; N/A GL192370.1 samtools variation 2198819 2198819 . . . alleles " C G"; frequencies " 0.540540540540541 0.459459459459459"; depth 37 ; known ; N/A GL192370.1 samtools variation 2198839 2198839 . . . alleles " A G"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192370.1 samtools variation 2198891 2198891 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192370.1 samtools variation 2199436 2199436 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 104 ; known ; N/A GL192370.1 samtools variation 2199521 2199521 . . . alleles " A C"; frequencies " 0.292134831460674 0.707865168539326"; depth 89 ; known ; N/A GL192370.1 samtools variation 2199571 2199571 . . . alleles " A T"; frequencies " 0.75968992248062 0.24031007751938"; depth 129 ; known ; N/A GL192370.1 samtools variation 2199687 2199687 . . . alleles " T G"; frequencies " 0.309090909090909 0.690909090909091"; depth 55 ; known ; N/A GL192370.1 samtools variation 2199776 2199776 . . . alleles " G A"; frequencies " 0.629370629370629 0.370629370629371"; depth 143 ; unknown ; N/A GL192370.1 samtools variation 2201624 2201624 . . . alleles " G A"; frequencies " 0.446428571428571 0.553571428571429"; depth 112 ; known ; N/A GL192370.1 samtools variation 2202221 2202221 . . . alleles " C A"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192370.1 samtools variation 2202224 2202224 . . . alleles " T G"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192370.1 samtools variation 2202740 2202740 . . . alleles " C G"; frequencies " 0.526315789473684 0.473684210526316"; depth 57 ; known ; N/A GL192370.1 samtools variation 2202763 2202763 . . . alleles " A G"; frequencies " 0.568181818181818 0.431818181818182"; depth 44 ; known ; N/A GL192370.1 samtools variation 2202865 2202865 . . . alleles " A T"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; known ; N/A GL192370.1 samtools variation 2202966 2202966 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192370.1 samtools variation 2202971 2202971 . . . alleles " A C"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192370.1 samtools variation 2203085 2203085 . . . alleles " C T"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; known ; N/A GL192370.1 samtools variation 2203127 2203127 . . . alleles " T A"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; known ; N/A GL192370.1 samtools variation 2203744 2203744 . . . alleles " A G"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL192370.1 samtools variation 2203857 2203857 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192370.1 samtools variation 2207116 2207116 . . . alleles " G A"; frequencies " 0.530120481927711 0.469879518072289"; depth 83 ; known ; N/A GL192370.1 samtools variation 2209868 2209868 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 30 ; known ; N/A GL192370.1 samtools variation 2211392 2211392 . . . alleles " C T"; frequencies " 0.757575757575758 0.242424242424242"; depth 165 ; known ; N/A GL192370.1 samtools variation 2211659 2211659 . . . alleles " C T"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; known ; N/A GL192370.1 samtools variation 2213252 2213252 . . . alleles " T A"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192370.1 samtools variation 2213486 2213486 . . . alleles " G A"; frequencies " 0.771929824561403 0.228070175438596"; depth 57 ; unknown ; N/A GL192370.1 samtools variation 2213747 2213747 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192370.1 samtools variation 2213901 2213901 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192370.1 samtools variation 2214156 2214156 . . . alleles " A G"; frequencies " 0.721518987341772 0.278481012658228"; depth 79 ; unknown ; N/A GL192370.1 samtools variation 2214182 2214182 . . . alleles " G T"; frequencies " 0.626506024096386 0.373493975903614"; depth 83 ; unknown ; N/A GL192370.1 samtools variation 2214247 2214247 . . . alleles " T C"; frequencies " 0.56 0.44"; depth 50 ; unknown ; N/A GL192370.1 samtools variation 2214273 2214273 . . . alleles " C T"; frequencies " 0.63013698630137 0.36986301369863"; depth 73 ; unknown ; N/A GL192370.1 samtools variation 2214339 2214339 . . . alleles " A G"; frequencies " 0.702702702702703 0.297297297297297"; depth 74 ; unknown ; N/A GL192370.1 samtools variation 2215058 2215058 . . . alleles " A G"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192370.1 samtools variation 2215539 2215539 . . . alleles " A G"; frequencies " 0.752577319587629 0.247422680412371"; depth 97 ; unknown ; N/A GL192370.1 samtools variation 2216939 2216939 . . . alleles " T C"; frequencies " 0.675 0.325"; depth 40 ; unknown ; N/A GL192370.1 samtools variation 2218699 2218699 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192370.1 samtools variation 2218794 2218794 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192370.1 samtools variation 2219354 2219354 . . . alleles " C T"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL192370.1 samtools variation 2221679 2221679 . . . alleles " T C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192370.1 samtools variation 2222334 2222334 . . . alleles " G A"; frequencies " 0.71875 0.28125"; depth 32 ; known ; N/A GL192370.1 samtools variation 2223039 2223039 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192370.1 samtools variation 2223048 2223048 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192370.1 samtools variation 2223414 2223414 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192370.1 samtools variation 2224968 2224968 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192370.1 samtools variation 2225159 2225159 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192370.1 samtools variation 2225299 2225299 . . . alleles " A C"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; known ; N/A GL192370.1 samtools variation 2232329 2232329 . . . alleles " T G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192370.1 samtools variation 2233158 2233158 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192370.1 samtools variation 2234019 2234019 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192370.1 samtools variation 2234612 2234612 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 39 ; unknown ; N/A GL192370.1 samtools variation 2237027 2237027 . . . alleles " A T"; frequencies " 0.36734693877551 0.63265306122449"; depth 49 ; unknown ; N/A GL192370.1 samtools variation 2237039 2237039 . . . alleles " G T"; frequencies " 0.358974358974359 0.641025641025641"; depth 39 ; unknown ; N/A GL192370.1 samtools variation 2310606 2310606 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; synonymous GL192370.1 samtools variation 2310843 2310843 . . . alleles " G T"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; known ; synonymous GL192370.1 samtools variation 2311911 2311911 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192370.1 samtools variation 2312068 2312068 . . . alleles " T C"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL192370.1 samtools variation 2363980 2363980 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192370.1 samtools variation 2843793 2843793 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; known ; non-synonymous GL192370.1 samtools variation 2953053 2953053 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192370.1 samtools variation 2972360 2972360 . . . alleles " G T"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL192370.1 samtools variation 2975998 2975998 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192370.1 samtools variation 2980252 2980252 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192370.1 samtools variation 2997322 2997322 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192370.1 samtools variation 3001055 3001055 . . . alleles " T G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192370.1 samtools variation 3001342 3001342 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192370.1 samtools variation 3008162 3008162 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192370.1 samtools variation 3014999 3014999 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192370.1 samtools variation 3025944 3025944 . . . alleles " T C"; frequencies " 0.772151898734177 0.227848101265823"; depth 79 ; unknown ; synonymous GL192370.1 samtools variation 3033648 3033648 . . . alleles " A G"; frequencies " 0.746835443037975 0.253164556962025"; depth 79 ; unknown ; synonymous GL192370.1 samtools variation 3037077 3037077 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192370.1 samtools variation 3038510 3038510 . . . alleles " C G"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192370.1 samtools variation 3038531 3038531 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192370.1 samtools variation 3039761 3039761 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192370.1 samtools variation 3040033 3040033 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; N/A GL192370.1 samtools variation 3040072 3040072 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192370.1 samtools variation 3074767 3074767 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192370.1 samtools variation 3112121 3112121 . . . alleles " T G"; frequencies " 0.516129032258065 0.483870967741935"; depth 62 ; unknown ; synonymous GL192371.1 samtools variation 212743 212743 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; non-synonymous GL192371.1 samtools variation 247218 247218 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 91 ; unknown ; N/A GL192371.1 samtools variation 917251 917251 . . . alleles " T A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192371.1 samtools variation 936773 936773 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192371.1 samtools variation 941577 941577 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 135 ; known ; non-synonymous GL192371.1 samtools variation 945865 945865 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192371.1 samtools variation 947031 947031 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL192371.1 samtools variation 947782 947782 . . . alleles " C T"; frequencies " 0.694444444444444 0.305555555555556"; depth 72 ; known ; N/A GL192371.1 samtools variation 953992 953992 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192371.1 samtools variation 955016 955016 . . . alleles " T C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; known ; N/A GL192371.1 samtools variation 959723 959723 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192371.1 samtools variation 964725 964725 . . . alleles " A T"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; known ; N/A GL192371.1 samtools variation 969285 969285 . . . alleles " A G"; frequencies " 0.35632183908046 0.64367816091954"; depth 87 ; known ; N/A GL192371.1 samtools variation 972633 972633 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; known ; N/A GL192371.1 samtools variation 1143749 1143749 . . . alleles " C G"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; known ; non-synonymous GL192371.1 samtools variation 1206765 1206765 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192371.1 samtools variation 1207061 1207061 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192371.1 samtools variation 1215612 1215612 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192371.1 samtools variation 1219383 1219383 . . . alleles " G A"; frequencies " 0.619718309859155 0.380281690140845"; depth 71 ; unknown ; synonymous GL192371.1 samtools variation 1390698 1390698 . . . alleles " A T"; frequencies " 0.621951219512195 0.378048780487805"; depth 82 ; known ; synonymous GL192371.1 samtools variation 1407280 1407280 . . . alleles " A G"; frequencies " 0.659574468085106 0.340425531914894"; depth 47 ; known ; synonymous GL192371.1 samtools variation 1409642 1409642 . . . alleles " T C"; frequencies " 0.351851851851852 0.648148148148148"; depth 162 ; known ; N/A GL192371.1 samtools variation 1422975 1422975 . . . alleles " A G"; frequencies " 0.341880341880342 0.658119658119658"; depth 117 ; known ; non-synonymous GL192371.1 samtools variation 1476960 1476960 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192371.1 samtools variation 1483244 1483244 . . . alleles " C A"; frequencies " 0.679012345679012 0.320987654320988"; depth 162 ; known ; N/A GL192371.1 samtools variation 1484025 1484025 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192371.1 samtools variation 1582480 1582480 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; synonymous GL192371.1 samtools variation 1583772 1583772 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192371.1 samtools variation 1614941 1614941 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192371.1 samtools variation 1625260 1625260 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192371.1 samtools variation 1635851 1635851 . . . alleles " T C"; frequencies " 0.227272727272727 0.681818181818182"; depth 22 ; known ; N/A GL192371.1 samtools variation 1636505 1636505 . . . alleles " G T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192371.1 samtools variation 1711455 1711455 . . . alleles " T C"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL192371.1 samtools variation 1711798 1711798 . . . alleles " A G"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL192371.1 samtools variation 1711887 1711887 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192371.1 samtools variation 1763862 1763862 . . . alleles " G A"; frequencies " 0.617021276595745 0.382978723404255"; depth 47 ; unknown ; N/A GL192371.1 samtools variation 1824808 1824808 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192371.1 samtools variation 1836435 1836435 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192371.1 samtools variation 1837879 1837879 . . . alleles " C T"; frequencies " 0.652542372881356 0.347457627118644"; depth 354 ; known ; N/A GL192371.1 samtools variation 1998164 1998164 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192371.1 samtools variation 2001552 2001552 . . . alleles " T G"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; unknown ; N/A GL192371.1 samtools variation 2002176 2002176 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; N/A GL192371.1 samtools variation 2002375 2002375 . . . alleles " G T"; frequencies " 0.741573033707865 0.258426966292135"; depth 89 ; unknown ; N/A GL192371.1 samtools variation 2002560 2002560 . . . alleles " C T"; frequencies " 0.656862745098039 0.343137254901961"; depth 102 ; unknown ; N/A GL192371.1 samtools variation 2023672 2023672 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192371.1 samtools variation 2080908 2080908 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192371.1 samtools variation 2210081 2210081 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL192371.1 samtools variation 2211265 2211265 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192371.1 samtools variation 2212475 2212475 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192371.1 samtools variation 2259821 2259821 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 36 ; unknown ; N/A GL192371.1 samtools variation 2260356 2260356 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192371.1 samtools variation 2357126 2357126 . . . alleles " C T"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; unknown ; synonymous GL192371.1 samtools variation 2375073 2375073 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192371.1 samtools variation 2860077 2860077 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192371.1 samtools variation 2860748 2860748 . . . alleles " A T"; frequencies " 0.231884057971014 0.768115942028985"; depth 69 ; unknown ; non-synonymous GL192371.1 samtools variation 2861523 2861523 . . . alleles " T C"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; synonymous GL192371.1 samtools variation 2861530 2861530 . . . alleles " A C"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; non-synonymous GL192371.1 samtools variation 2863260 2863260 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192371.1 samtools variation 2976829 2976829 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192371.1 samtools variation 2977533 2977533 . . . alleles " C T"; frequencies " 0.570175438596491 0.429824561403509"; depth 114 ; unknown ; synonymous GL192371.1 samtools variation 2981400 2981400 . . . alleles " T C"; frequencies " 0.716417910447761 0.283582089552239"; depth 67 ; unknown ; synonymous GL192371.1 samtools variation 3017130 3017130 . . . alleles " C T"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; N/A GL192371.1 samtools variation 3018143 3018143 . . . alleles " C G"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL192371.1 samtools variation 3020491 3020491 . . . alleles " G C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192371.1 samtools variation 3022481 3022481 . . . alleles " T C"; frequencies " 0.587443946188341 0.412556053811659"; depth 223 ; unknown ; N/A GL192371.1 samtools variation 3023272 3023272 . . . alleles " C T"; frequencies " 0.718232044198895 0.281767955801105"; depth 181 ; unknown ; synonymous GL192372.1 samtools variation 2147722 2147722 . . . alleles " A T"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; known ; N/A GL192372.1 samtools variation 2148371 2148371 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 63 ; known ; N/A GL192372.1 samtools variation 2149245 2149245 . . . alleles " C T"; frequencies " 0.528301886792453 0.471698113207547"; depth 53 ; unknown ; N/A GL192372.1 samtools variation 2182701 2182701 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192372.1 samtools variation 2182981 2182981 . . . alleles " G A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL192372.1 samtools variation 2184207 2184207 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192372.1 samtools variation 2331892 2331892 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; non-synonymous GL192372.1 samtools variation 2556053 2556053 . . . alleles " C A"; frequencies " 0.655963302752294 0.344036697247706"; depth 218 ; unknown ; synonymous GL192372.1 samtools variation 2581441 2581441 . . . alleles " C T"; frequencies " 0.574931880108992 0.425068119891008"; depth 367 ; unknown ; synonymous GL192372.1 samtools variation 2634903 2634903 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192372.1 samtools variation 2635403 2635403 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192372.1 samtools variation 2635443 2635443 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192372.1 samtools variation 2649285 2649285 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192372.1 samtools variation 2650171 2650171 . . . alleles " T C"; frequencies " 0.346153846153846 0.653846153846154"; depth 52 ; unknown ; N/A GL192372.1 samtools variation 2651141 2651141 . . . alleles " T C"; frequencies " 0.528813559322034 0.471186440677966"; depth 295 ; unknown ; synonymous GL192372.1 samtools variation 2696900 2696900 . . . alleles " C A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192372.1 samtools variation 2754006 2754006 . . . alleles " C T"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; unknown ; synonymous GL192372.1 samtools variation 2772556 2772556 . . . alleles " G T"; frequencies " 0.641509433962264 0.358490566037736"; depth 53 ; unknown ; non-synonymous GL192372.1 samtools variation 2778313 2778313 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 56 ; unknown ; synonymous GL192372.1 samtools variation 2781652 2781652 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192372.1 samtools variation 2801971 2801971 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 33 ; known ; synonymous GL192372.1 samtools variation 2825115 2825115 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192372.1 samtools variation 2829963 2829963 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192372.1 samtools variation 2851222 2851222 . . . alleles " T G"; frequencies " 0.209016393442623 0.790983606557377"; depth 244 ; unknown ; N/A GL192372.1 samtools variation 2851762 2851762 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL192372.1 samtools variation 2852286 2852286 . . . alleles " A G"; frequencies " 0.291866028708134 0.708133971291866"; depth 209 ; unknown ; N/A GL192372.1 samtools variation 2855741 2855741 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192372.1 samtools variation 2857522 2857522 . . . alleles " A G"; frequencies " 0.205882352941176 0.794117647058823"; depth 68 ; unknown ; N/A GL192372.1 samtools variation 2858891 2858891 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192372.1 samtools variation 2862243 2862243 . . . alleles " G C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; non-synonymous GL192372.1 samtools variation 3188822 3188822 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 25 ; unknown ; synonymous GL192372.1 samtools variation 3830210 3830210 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL192373.1 samtools variation 2889446 2889446 . . . alleles " G C"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; unknown ; N/A GL192373.1 samtools variation 2893881 2893881 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192373.1 samtools variation 2897961 2897961 . . . alleles " A G"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; N/A GL192373.1 samtools variation 3474729 3474729 . . . alleles " A T"; frequencies " 0.560606060606061 0.439393939393939"; depth 66 ; unknown ; non-synonymous GL192373.1 samtools variation 3700255 3700255 . . . alleles " G A"; frequencies " 0.709876543209877 0.290123456790123"; depth 486 ; unknown ; N/A GL192373.1 samtools variation 3700495 3700495 . . . alleles " C T"; frequencies " 0.617293835068054 0.382706164931946"; depth 1249 ; unknown ; N/A GL192373.1 samtools variation 3705876 3705876 . . . alleles " T G"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL192373.1 samtools variation 3706704 3706704 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192373.1 samtools variation 3706999 3706999 . . . alleles " T A"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192373.1 samtools variation 3746988 3746988 . . . alleles " G A"; frequencies " 0.687150837988827 0.312849162011173"; depth 179 ; unknown ; N/A GL192373.1 samtools variation 3748317 3748317 . . . alleles " C T"; frequencies " 0.744525547445255 0.255474452554745"; depth 137 ; unknown ; N/A GL192373.1 samtools variation 3749348 3749348 . . . alleles " G T"; frequencies " 0.655405405405405 0.344594594594595"; depth 1036 ; unknown ; N/A GL192373.1 samtools variation 3751574 3751574 . . . alleles " T C"; frequencies " 0.784546805349183 0.215453194650817"; depth 673 ; unknown ; synonymous GL192373.1 samtools variation 3752959 3752959 . . . alleles " G A"; frequencies " 0.626506024096386 0.373493975903614"; depth 332 ; unknown ; N/A GL192373.1 samtools variation 3753106 3753106 . . . alleles " C T"; frequencies " 0.565853658536585 0.434146341463415"; depth 205 ; unknown ; N/A GL192373.1 samtools variation 3753152 3753152 . . . alleles " C T"; frequencies " 0.561181434599156 0.438818565400844"; depth 237 ; unknown ; N/A GL192373.1 samtools variation 3754614 3754614 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 138 ; unknown ; N/A GL192373.1 samtools variation 3755300 3755300 . . . alleles " A G"; frequencies " 0.634799235181644 0.365200764818356"; depth 523 ; unknown ; synonymous GL192373.1 samtools variation 3755913 3755913 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 90 ; unknown ; N/A GL192373.1 samtools variation 3756747 3756747 . . . alleles " A G"; frequencies " 0.697309417040359 0.302690582959641"; depth 892 ; unknown ; non-synonymous GL192373.1 samtools variation 3759170 3759170 . . . alleles " G A"; frequencies " 0.711864406779661 0.288135593220339"; depth 59 ; unknown ; N/A GL192373.1 samtools variation 3759365 3759365 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192373.1 samtools variation 3759858 3759858 . . . alleles " A C"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL192373.1 samtools variation 3759900 3759900 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192373.1 samtools variation 3765858 3765858 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192373.1 samtools variation 3767234 3767234 . . . alleles " T C"; frequencies " 0.206896551724138 0.793103448275862"; depth 87 ; known ; N/A GL192373.1 samtools variation 3767338 3767338 . . . alleles " T G"; frequencies " 0.746987951807229 0.253012048192771"; depth 83 ; unknown ; N/A GL192373.1 samtools variation 3767849 3767849 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192373.1 samtools variation 3768396 3768396 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 60 ; unknown ; N/A GL192373.1 samtools variation 3768432 3768432 . . . alleles " A G"; frequencies " 0.759493670886076 0.240506329113924"; depth 79 ; unknown ; N/A GL192373.1 samtools variation 3768482 3768482 . . . alleles " A T"; frequencies " 0.746666666666667 0.253333333333333"; depth 75 ; unknown ; N/A GL192373.1 samtools variation 3768549 3768549 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 55 ; known ; N/A GL192373.1 samtools variation 3768961 3768961 . . . alleles " C A"; frequencies " 0.690582959641256 0.309417040358744"; depth 223 ; unknown ; N/A GL192373.1 samtools variation 3769532 3769532 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192373.1 samtools variation 3769768 3769768 . . . alleles " G C"; frequencies " 0.611510791366906 0.388489208633094"; depth 139 ; unknown ; N/A GL192373.1 samtools variation 3770681 3770681 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 80 ; known ; N/A GL192373.1 samtools variation 3770743 3770743 . . . alleles " C T"; frequencies " 0.586854460093897 0.413145539906103"; depth 213 ; known ; N/A GL192373.1 samtools variation 3773176 3773176 . . . alleles " A G"; frequencies " 0.581818181818182 0.418181818181818"; depth 55 ; unknown ; N/A GL192374.1 samtools variation 505947 505947 . . . alleles " C G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192374.1 samtools variation 534121 534121 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL192374.1 samtools variation 555609 555609 . . . alleles " G A"; frequencies " 0.702127659574468 0.297872340425532"; depth 47 ; known ; N/A GL192374.1 samtools variation 711409 711409 . . . alleles " G A"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL192374.1 samtools variation 715472 715472 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192374.1 samtools variation 733061 733061 . . . alleles " T A"; frequencies " 0.63921568627451 0.36078431372549"; depth 255 ; unknown ; N/A GL192374.1 samtools variation 851707 851707 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192374.1 samtools variation 869558 869558 . . . alleles " T G"; frequencies " 0.797101449275362 0.202898550724638"; depth 69 ; unknown ; N/A GL192374.1 samtools variation 870514 870514 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 76 ; unknown ; N/A GL192374.1 samtools variation 870609 870609 . . . alleles " A G"; frequencies " 0.725806451612903 0.274193548387097"; depth 62 ; unknown ; N/A GL192374.1 samtools variation 889928 889928 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192374.1 samtools variation 900963 900963 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192374.1 samtools variation 1281605 1281605 . . . alleles " G A"; frequencies " 0.339285714285714 0.660714285714286"; depth 56 ; known ; synonymous GL192374.1 samtools variation 1319796 1319796 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192374.1 samtools variation 1320858 1320858 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192374.1 samtools variation 1334620 1334620 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192374.1 samtools variation 1336051 1336051 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192374.1 samtools variation 1337880 1337880 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192374.1 samtools variation 1664266 1664266 . . . alleles " A G"; frequencies " 0.712328767123288 0.287671232876712"; depth 73 ; unknown ; synonymous GL192374.1 samtools variation 1780559 1780559 . . . alleles " A T"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; non-synonymous GL192374.1 samtools variation 1937382 1937382 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; synonymous GL192374.1 samtools variation 1977896 1977896 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; non-synonymous GL192374.1 samtools variation 3167772 3167772 . . . alleles " A G"; frequencies " 0.20891364902507 0.79108635097493"; depth 1077 ; known ; synonymous GL192374.1 samtools variation 3174327 3174327 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192374.1 samtools variation 3329843 3329843 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192374.1 samtools variation 3425513 3425513 . . . alleles " C G"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; N/A GL192374.1 samtools variation 3426316 3426316 . . . alleles " A G"; frequencies " 0.430656934306569 0.569343065693431"; depth 137 ; known ; N/A GL192374.1 samtools variation 3426467 3426467 . . . alleles " T C"; frequencies " 0.696969696969697 0.303030303030303"; depth 66 ; unknown ; N/A GL192374.1 samtools variation 3426649 3426649 . . . alleles " C T"; frequencies " 0.716417910447761 0.283582089552239"; depth 67 ; known ; N/A GL192374.1 samtools variation 3427083 3427083 . . . alleles " A G"; frequencies " 0.756410256410256 0.243589743589744"; depth 78 ; unknown ; N/A GL192374.1 samtools variation 3440532 3440532 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192374.1 samtools variation 3443150 3443150 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192374.1 samtools variation 3446139 3446139 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192374.1 samtools variation 3462374 3462374 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192374.1 samtools variation 3483265 3483265 . . . alleles " C T"; frequencies " 0.26219512195122 0.73780487804878"; depth 328 ; known ; non-synonymous GL192374.1 samtools variation 3483564 3483564 . . . alleles " C T"; frequencies " 0.735849056603774 0.264150943396226"; depth 53 ; unknown ; synonymous GL192374.1 samtools variation 3549617 3549617 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192374.1 samtools variation 3726599 3726599 . . . alleles " T G"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192374.1 samtools variation 3726646 3726646 . . . alleles " A G"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL192374.1 samtools variation 3727973 3727973 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192374.1 samtools variation 3728259 3728259 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 36 ; unknown ; N/A GL192374.1 samtools variation 3728482 3728482 . . . alleles " A G"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; unknown ; N/A GL192374.1 samtools variation 3728804 3728804 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192374.1 samtools variation 3728896 3728896 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192374.1 samtools variation 3728902 3728902 . . . alleles " A T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192374.1 samtools variation 3728913 3728913 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192374.1 samtools variation 3729023 3729023 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192374.1 samtools variation 3729898 3729898 . . . alleles " C T"; frequencies " 0.7625 0.2375"; depth 80 ; unknown ; N/A GL192374.1 samtools variation 3730206 3730206 . . . alleles " A G"; frequencies " 0.348837209302326 0.651162790697674"; depth 43 ; unknown ; N/A GL192374.1 samtools variation 3730297 3730297 . . . alleles " C G"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; unknown ; N/A GL192374.1 samtools variation 3731179 3731179 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192375.1 samtools variation 1984082 1984082 . . . alleles " C T"; frequencies " 0.459459459459459 0.540540540540541"; depth 37 ; unknown ; N/A GL192375.1 samtools variation 1984504 1984504 . . . alleles " G A"; frequencies " 0.259259259259259 0.740740740740741"; depth 81 ; unknown ; N/A GL192375.1 samtools variation 1984620 1984620 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; N/A GL192375.1 samtools variation 1984657 1984657 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 26 ; unknown ; N/A GL192375.1 samtools variation 1984852 1984852 . . . alleles " G A"; frequencies " 0.496732026143791 0.503267973856209"; depth 153 ; unknown ; N/A GL192375.1 samtools variation 2042253 2042253 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192375.1 samtools variation 2042427 2042427 . . . alleles " C G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192375.1 samtools variation 2266130 2266130 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; non-synonymous GL192375.1 samtools variation 2277882 2277882 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; unknown ; non-synonymous GL192375.1 samtools variation 2307050 2307050 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL192375.1 samtools variation 2411387 2411387 . . . alleles " C T"; frequencies " 0.24390243902439 0.75609756097561"; depth 41 ; known ; non-synonymous GL192375.1 samtools variation 2554101 2554101 . . . alleles " A C"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; unknown ; synonymous GL192375.1 samtools variation 3157358 3157358 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192375.1 samtools variation 3158849 3158849 . . . alleles " T C"; frequencies " 0.432432432432432 0.567567567567568"; depth 37 ; unknown ; N/A GL192375.1 samtools variation 3159496 3159496 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192375.1 samtools variation 3159605 3159605 . . . alleles " C A"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192375.1 samtools variation 3160763 3160763 . . . alleles " T G"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL192375.1 samtools variation 3161178 3161178 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192375.1 samtools variation 3161628 3161628 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192375.1 samtools variation 3164654 3164654 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192375.1 samtools variation 3165115 3165115 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192375.1 samtools variation 3165242 3165242 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192375.1 samtools variation 3167684 3167684 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192375.1 samtools variation 3168535 3168535 . . . alleles " T C"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192375.1 samtools variation 3168675 3168675 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192375.1 samtools variation 3169027 3169027 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192375.1 samtools variation 3172038 3172038 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192375.1 samtools variation 3172713 3172713 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192375.1 samtools variation 3173486 3173486 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192375.1 samtools variation 3173529 3173529 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192375.1 samtools variation 3173821 3173821 . . . alleles " G C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192375.1 samtools variation 3175461 3175461 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192375.1 samtools variation 3175465 3175465 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192375.1 samtools variation 3175561 3175561 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192375.1 samtools variation 3176247 3176247 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; known ; N/A GL192375.1 samtools variation 3177243 3177243 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192375.1 samtools variation 3177314 3177314 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192375.1 samtools variation 3177402 3177402 . . . alleles " G T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192375.1 samtools variation 3178327 3178327 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; known ; N/A GL192375.1 samtools variation 3178452 3178452 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 38 ; unknown ; N/A GL192375.1 samtools variation 3178595 3178595 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192375.1 samtools variation 3179396 3179396 . . . alleles " T A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192375.1 samtools variation 3194458 3194458 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192375.1 samtools variation 3194674 3194674 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; unknown ; N/A GL192375.1 samtools variation 3194758 3194758 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 52 ; unknown ; N/A GL192375.1 samtools variation 3195401 3195401 . . . alleles " T G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192375.1 samtools variation 3195488 3195488 . . . alleles " G C"; frequencies " 0.463768115942029 0.536231884057971"; depth 69 ; unknown ; N/A GL192375.1 samtools variation 3195619 3195619 . . . alleles " C T"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; N/A GL192375.1 samtools variation 3195690 3195690 . . . alleles " G T"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192375.1 samtools variation 3195809 3195809 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192375.1 samtools variation 3196606 3196606 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; unknown ; N/A GL192375.1 samtools variation 3197031 3197031 . . . alleles " T C"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; N/A GL192375.1 samtools variation 3199180 3199180 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192375.1 samtools variation 3200027 3200027 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192375.1 samtools variation 3200028 3200028 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192375.1 samtools variation 3200237 3200237 . . . alleles " A T"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL192375.1 samtools variation 3200441 3200441 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192375.1 samtools variation 3200890 3200890 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192375.1 samtools variation 3200894 3200894 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192375.1 samtools variation 3200941 3200941 . . . alleles " T C"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL192375.1 samtools variation 3201312 3201312 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; unknown ; N/A GL192375.1 samtools variation 3201512 3201512 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192375.1 samtools variation 3202838 3202838 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 30 ; known ; N/A GL192375.1 samtools variation 3203084 3203084 . . . alleles " G A"; frequencies " 0.5 0.470588235294118"; depth 68 ; unknown ; N/A GL192375.1 samtools variation 3203143 3203143 . . . alleles " A G"; frequencies " 0.516666666666667 0.483333333333333"; depth 60 ; unknown ; N/A GL192375.1 samtools variation 3203448 3203448 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 40 ; unknown ; N/A GL192375.1 samtools variation 3203485 3203485 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 56 ; unknown ; N/A GL192375.1 samtools variation 3205038 3205038 . . . alleles " T G"; frequencies " 0.425287356321839 0.574712643678161"; depth 87 ; unknown ; N/A GL192375.1 samtools variation 3205381 3205381 . . . alleles " T C"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; known ; N/A GL192375.1 samtools variation 3206598 3206598 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL192375.1 samtools variation 3206631 3206631 . . . alleles " T G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192375.1 samtools variation 3209137 3209137 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192375.1 samtools variation 3209452 3209452 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192375.1 samtools variation 3209785 3209785 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192375.1 samtools variation 3210227 3210227 . . . alleles " G C"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL192375.1 samtools variation 3210955 3210955 . . . alleles " T A"; frequencies " 0.225 0.775"; depth 40 ; known ; N/A GL192375.1 samtools variation 3213243 3213243 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192375.1 samtools variation 3213261 3213261 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192375.1 samtools variation 3214710 3214710 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192375.1 samtools variation 3218086 3218086 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192375.1 samtools variation 3234604 3234604 . . . alleles " A G"; frequencies " 0.773109243697479 0.226890756302521"; depth 119 ; unknown ; N/A GL192375.1 samtools variation 3234715 3234715 . . . alleles " C A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192375.1 samtools variation 3234854 3234854 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 60 ; unknown ; N/A GL192375.1 samtools variation 3235094 3235094 . . . alleles " T A"; frequencies " 0.483221476510067 0.516778523489933"; depth 149 ; unknown ; N/A GL192375.1 samtools variation 3235269 3235269 . . . alleles " A G"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; N/A GL192375.1 samtools variation 3235496 3235496 . . . alleles " A G"; frequencies " 0.741071428571429 0.258928571428571"; depth 112 ; unknown ; N/A GL192375.1 samtools variation 3236862 3236862 . . . alleles " A G"; frequencies " 0.577777777777778 0.422222222222222"; depth 45 ; unknown ; N/A GL192375.1 samtools variation 3238287 3238287 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192375.1 samtools variation 3238327 3238327 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192375.1 samtools variation 3239909 3239909 . . . alleles " T G"; frequencies " 0.591549295774648 0.394366197183099"; depth 71 ; known ; N/A GL192375.1 samtools variation 3241507 3241507 . . . alleles " A G"; frequencies " 0.314814814814815 0.666666666666667"; depth 54 ; known ; N/A GL192375.1 samtools variation 3241622 3241622 . . . alleles " T A"; frequencies " 0.651515151515151 0.348484848484849"; depth 66 ; unknown ; N/A GL192375.1 samtools variation 3241642 3241642 . . . alleles " G C"; frequencies " 0.697674418604651 0.302325581395349"; depth 43 ; known ; N/A GL192375.1 samtools variation 3243136 3243136 . . . alleles " C G"; frequencies " 0.355769230769231 0.644230769230769"; depth 104 ; known ; N/A GL192375.1 samtools variation 3243572 3243572 . . . alleles " A T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192375.1 samtools variation 3244296 3244296 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192375.1 samtools variation 3251516 3251516 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192375.1 samtools variation 3251613 3251613 . . . alleles " A G"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192375.1 samtools variation 3253673 3253673 . . . alleles " G C"; frequencies " 0.261538461538462 0.738461538461539"; depth 65 ; known ; N/A GL192375.1 samtools variation 3253844 3253844 . . . alleles " T C"; frequencies " 0.37012987012987 0.62987012987013"; depth 154 ; known ; N/A GL192375.1 samtools variation 3428758 3428758 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192375.1 samtools variation 3451232 3451232 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 40 ; known ; non-synonymous GL192375.1 samtools variation 3483952 3483952 . . . alleles " G A"; frequencies " 0.268292682926829 0.731707317073171"; depth 41 ; known ; N/A GL192375.1 samtools variation 3825862 3825862 . . . alleles " T C"; frequencies " 0.351351351351351 0.648648648648649"; depth 74 ; unknown ; N/A GL192375.1 samtools variation 3851899 3851899 . . . alleles " T A"; frequencies " 0.471698113207547 0.528301886792453"; depth 53 ; unknown ; non-synonymous GL192375.1 samtools variation 3852160 3852160 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 78 ; known ; non-synonymous GL192376.1 samtools variation 1937862 1937862 . . . alleles " T A"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192376.1 samtools variation 1937949 1937949 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192376.1 samtools variation 1995907 1995907 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192376.1 samtools variation 2020393 2020393 . . . alleles " A C"; frequencies " 0.765957446808511 0.234042553191489"; depth 94 ; unknown ; N/A GL192376.1 samtools variation 2062004 2062004 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192376.1 samtools variation 2284839 2284839 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192376.1 samtools variation 2866638 2866638 . . . alleles " C T"; frequencies " 0.601398601398601 0.398601398601399"; depth 143 ; unknown ; synonymous GL192376.1 samtools variation 2866811 2866811 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; unknown ; N/A GL192376.1 samtools variation 2868309 2868309 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL192376.1 samtools variation 2868651 2868651 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192376.1 samtools variation 2870714 2870714 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192376.1 samtools variation 2871920 2871920 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 105 ; unknown ; synonymous GL192376.1 samtools variation 2885051 2885051 . . . alleles " C T"; frequencies " 0.529680365296804 0.470319634703196"; depth 219 ; unknown ; synonymous GL192376.1 samtools variation 3577028 3577028 . . . alleles " C T"; frequencies " 0.75796178343949 0.24203821656051"; depth 157 ; unknown ; N/A GL192376.1 samtools variation 3577103 3577103 . . . alleles " G A"; frequencies " 0.251968503937008 0.748031496062992"; depth 127 ; known ; N/A GL192376.1 samtools variation 3577123 3577123 . . . alleles " G C"; frequencies " 0.553719008264463 0.446280991735537"; depth 121 ; known ; N/A GL192376.1 samtools variation 3582587 3582587 . . . alleles " T C"; frequencies " 0.320754716981132 0.679245283018868"; depth 106 ; known ; non-synonymous GL192376.1 samtools variation 3671702 3671702 . . . alleles " A G"; frequencies " 0.318840579710145 0.681159420289855"; depth 69 ; known ; N/A GL192376.1 samtools variation 3671749 3671749 . . . alleles " A G"; frequencies " 0.644736842105263 0.355263157894737"; depth 76 ; known ; N/A GL192376.1 samtools variation 3673445 3673445 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL192376.1 samtools variation 3676052 3676052 . . . alleles " A G"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; known ; N/A GL192376.1 samtools variation 3678145 3678145 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192376.1 samtools variation 3678435 3678435 . . . alleles " G C"; frequencies " 0.388888888888889 0.611111111111111"; depth 72 ; known ; N/A GL192376.1 samtools variation 3678639 3678639 . . . alleles " T G"; frequencies " 0.797101449275362 0.202898550724638"; depth 69 ; unknown ; N/A GL192376.1 samtools variation 3681183 3681183 . . . alleles " C G"; frequencies " 0.661764705882353 0.338235294117647"; depth 68 ; known ; N/A GL192376.1 samtools variation 3681995 3681995 . . . alleles " G A"; frequencies " 0.761061946902655 0.238938053097345"; depth 113 ; known ; synonymous GL192376.1 samtools variation 3705517 3705517 . . . alleles " G A"; frequencies " 0.436619718309859 0.563380281690141"; depth 71 ; known ; N/A GL192376.1 samtools variation 3706278 3706278 . . . alleles " A C"; frequencies " 0.476744186046512 0.523255813953488"; depth 258 ; known ; N/A GL192378.1 samtools variation 484355 484355 . . . alleles " G T"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL192378.1 samtools variation 539921 539921 . . . alleles " G A"; frequencies " 0.408163265306122 0.591836734693878"; depth 49 ; unknown ; N/A GL192378.1 samtools variation 540006 540006 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192378.1 samtools variation 540141 540141 . . . alleles " A G"; frequencies " 0.458333333333333 0.541666666666667"; depth 48 ; unknown ; N/A GL192378.1 samtools variation 540150 540150 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 32 ; unknown ; N/A GL192378.1 samtools variation 540268 540268 . . . alleles " A C"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; unknown ; N/A GL192378.1 samtools variation 540286 540286 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192378.1 samtools variation 540742 540742 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; non-synonymous GL192378.1 samtools variation 540777 540777 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; synonymous GL192378.1 samtools variation 540978 540978 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 24 ; unknown ; synonymous GL192378.1 samtools variation 541218 541218 . . . alleles " G A"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; unknown ; synonymous GL192378.1 samtools variation 565640 565640 . . . alleles " C T"; frequencies " 0.418604651162791 0.581395348837209"; depth 43 ; unknown ; N/A GL192378.1 samtools variation 565748 565748 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192378.1 samtools variation 565772 565772 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL192378.1 samtools variation 565859 565859 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192378.1 samtools variation 565978 565978 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; synonymous GL192378.1 samtools variation 566026 566026 . . . alleles " C G"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; non-synonymous GL192378.1 samtools variation 574279 574279 . . . alleles " C T"; frequencies " 0.741935483870968 0.258064516129032"; depth 341 ; unknown ; N/A GL192378.1 samtools variation 577211 577211 . . . alleles " G A"; frequencies " 0.282608695652174 0.717391304347826"; depth 92 ; known ; N/A GL192378.1 samtools variation 609768 609768 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; N/A GL192378.1 samtools variation 623796 623796 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192378.1 samtools variation 1108314 1108314 . . . alleles " C T"; frequencies " 0.761363636363636 0.238636363636364"; depth 88 ; unknown ; synonymous GL192378.1 samtools variation 1112818 1112818 . . . alleles " A G"; frequencies " 0.698924731182796 0.301075268817204"; depth 93 ; unknown ; N/A GL192378.1 samtools variation 1114157 1114157 . . . alleles " A G"; frequencies " 0.649122807017544 0.350877192982456"; depth 171 ; unknown ; N/A GL192378.1 samtools variation 1860377 1860377 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 1906915 1906915 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 1939980 1939980 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192378.1 samtools variation 1942290 1942290 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL192378.1 samtools variation 1942331 1942331 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL192378.1 samtools variation 1958478 1958478 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 1959191 1959191 . . . alleles " T A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192378.1 samtools variation 1961046 1961046 . . . alleles " A T"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL192378.1 samtools variation 1961928 1961928 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; N/A GL192378.1 samtools variation 1962941 1962941 . . . alleles " T G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL192378.1 samtools variation 1963939 1963939 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192378.1 samtools variation 1965328 1965328 . . . alleles " A G"; frequencies " 0.37280701754386 0.62719298245614"; depth 228 ; known ; N/A GL192378.1 samtools variation 1965358 1965358 . . . alleles " A G"; frequencies " 0.365765765765766 0.634234234234234"; depth 555 ; known ; N/A GL192378.1 samtools variation 1966389 1966389 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192378.1 samtools variation 1966820 1966820 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL192378.1 samtools variation 1973648 1973648 . . . alleles " C T"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; unknown ; N/A GL192378.1 samtools variation 1975159 1975159 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 36 ; unknown ; N/A GL192378.1 samtools variation 1978481 1978481 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192378.1 samtools variation 1979907 1979907 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192378.1 samtools variation 1979913 1979913 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192378.1 samtools variation 1981800 1981800 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192378.1 samtools variation 1981824 1981824 . . . alleles " G A"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL192378.1 samtools variation 1982579 1982579 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192378.1 samtools variation 1983465 1983465 . . . alleles " T C"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL192378.1 samtools variation 1983491 1983491 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL192378.1 samtools variation 1984155 1984155 . . . alleles " A G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192378.1 samtools variation 1984654 1984654 . . . alleles " G T"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192378.1 samtools variation 1984655 1984655 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL192378.1 samtools variation 1987839 1987839 . . . alleles " T C"; frequencies " 0.289782244556114 0.710217755443886"; depth 1194 ; known ; synonymous GL192378.1 samtools variation 1991655 1991655 . . . alleles " T C"; frequencies " 0.525 0.475"; depth 40 ; known ; N/A GL192378.1 samtools variation 1992245 1992245 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 25 ; known ; N/A GL192378.1 samtools variation 1992744 1992744 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192378.1 samtools variation 1992903 1992903 . . . alleles " C T"; frequencies " 0.372093023255814 0.627906976744186"; depth 43 ; known ; N/A GL192378.1 samtools variation 1995273 1995273 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192378.1 samtools variation 1995306 1995306 . . . alleles " C T"; frequencies " 0.288930581613508 0.711069418386492"; depth 1066 ; known ; synonymous GL192378.1 samtools variation 1995384 1995384 . . . alleles " C T"; frequencies " 0.751448808757244 0.248551191242756"; depth 1553 ; known ; synonymous GL192378.1 samtools variation 1996431 1996431 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192378.1 samtools variation 1999612 1999612 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 2001177 2001177 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192378.1 samtools variation 2001473 2001473 . . . alleles " A G"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192378.1 samtools variation 2002129 2002129 . . . alleles " A C"; frequencies " 0.211565585331453 0.788434414668547"; depth 709 ; unknown ; non-synonymous GL192378.1 samtools variation 2002130 2002130 . . . alleles " T C"; frequencies " 0.212857142857143 0.787142857142857"; depth 700 ; unknown ; non-synonymous GL192378.1 samtools variation 2002203 2002203 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 518 ; unknown ; synonymous GL192378.1 samtools variation 2002574 2002574 . . . alleles " A G"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; N/A GL192378.1 samtools variation 2003381 2003381 . . . alleles " A G"; frequencies " 0.691489361702128 0.308510638297872"; depth 94 ; unknown ; N/A GL192378.1 samtools variation 2003439 2003439 . . . alleles " T C"; frequencies " 0.373015873015873 0.626984126984127"; depth 126 ; unknown ; N/A GL192378.1 samtools variation 2003448 2003448 . . . alleles " A G"; frequencies " 0.689922480620155 0.310077519379845"; depth 129 ; unknown ; N/A GL192378.1 samtools variation 2003757 2003757 . . . alleles " G A"; frequencies " 0.273972602739726 0.726027397260274"; depth 73 ; unknown ; N/A GL192378.1 samtools variation 2003912 2003912 . . . alleles " C A"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL192378.1 samtools variation 2004084 2004084 . . . alleles " G A"; frequencies " 0.422222222222222 0.577777777777778"; depth 45 ; unknown ; N/A GL192378.1 samtools variation 2004473 2004473 . . . alleles " G T"; frequencies " 0.564102564102564 0.435897435897436"; depth 39 ; unknown ; N/A GL192378.1 samtools variation 2004492 2004492 . . . alleles " G A"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL192378.1 samtools variation 2008125 2008125 . . . alleles " C T"; frequencies " 0.775510204081633 0.224489795918367"; depth 98 ; unknown ; N/A GL192378.1 samtools variation 2008492 2008492 . . . alleles " G A"; frequencies " 0.34 0.66"; depth 100 ; unknown ; N/A GL192378.1 samtools variation 2008848 2008848 . . . alleles " C A"; frequencies " 0.691729323308271 0.308270676691729"; depth 133 ; unknown ; N/A GL192378.1 samtools variation 2010543 2010543 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 2013568 2013568 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192378.1 samtools variation 2014511 2014511 . . . alleles " G T"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL192378.1 samtools variation 2014516 2014516 . . . alleles " C T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL192378.1 samtools variation 2014949 2014949 . . . alleles " T A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192378.1 samtools variation 2015876 2015876 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192378.1 samtools variation 2016021 2016021 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192378.1 samtools variation 2016224 2016224 . . . alleles " A G"; frequencies " 0.276595744680851 0.723404255319149"; depth 47 ; unknown ; N/A GL192378.1 samtools variation 2016262 2016262 . . . alleles " C G"; frequencies " 0.425531914893617 0.574468085106383"; depth 47 ; unknown ; N/A GL192378.1 samtools variation 2019929 2019929 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; known ; N/A GL192378.1 samtools variation 2020222 2020222 . . . alleles " C T"; frequencies " 0.394736842105263 0.605263157894737"; depth 38 ; known ; N/A GL192378.1 samtools variation 2020284 2020284 . . . alleles " G A"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; known ; N/A GL192378.1 samtools variation 2021314 2021314 . . . alleles " G C"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; N/A GL192378.1 samtools variation 2022943 2022943 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192378.1 samtools variation 2022968 2022968 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192378.1 samtools variation 2023054 2023054 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192378.1 samtools variation 2023156 2023156 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 65 ; known ; N/A GL192378.1 samtools variation 2030812 2030812 . . . alleles " T G"; frequencies " 0.384972170686456 0.61317254174397"; depth 1078 ; known ; synonymous GL192378.1 samtools variation 2031965 2031965 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192378.1 samtools variation 2032002 2032002 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192378.1 samtools variation 2032023 2032023 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192378.1 samtools variation 2032813 2032813 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL192378.1 samtools variation 2033301 2033301 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192378.1 samtools variation 2033367 2033367 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192378.1 samtools variation 2033507 2033507 . . . alleles " C A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL192378.1 samtools variation 2034576 2034576 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192378.1 samtools variation 2034971 2034971 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; known ; N/A GL192378.1 samtools variation 2035105 2035105 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; known ; N/A GL192378.1 samtools variation 2038870 2038870 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192378.1 samtools variation 2039009 2039009 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192378.1 samtools variation 2040565 2040565 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192378.1 samtools variation 2041472 2041472 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192378.1 samtools variation 2041528 2041528 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192378.1 samtools variation 2042643 2042643 . . . alleles " A T"; frequencies " 0.4375 0.5625"; depth 32 ; unknown ; N/A GL192378.1 samtools variation 2043135 2043135 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL192378.1 samtools variation 2043985 2043985 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 2043987 2043987 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 2044283 2044283 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192378.1 samtools variation 2044658 2044658 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 2046576 2046576 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 2046968 2046968 . . . alleles " G A"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL192378.1 samtools variation 2047186 2047186 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192378.1 samtools variation 2047206 2047206 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192378.1 samtools variation 2047733 2047733 . . . alleles " T C"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL192378.1 samtools variation 2047861 2047861 . . . alleles " G A"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; unknown ; N/A GL192378.1 samtools variation 2048034 2048034 . . . alleles " C T"; frequencies " 0.696969696969697 0.303030303030303"; depth 66 ; unknown ; N/A GL192378.1 samtools variation 2048182 2048182 . . . alleles " G C"; frequencies " 0.752577319587629 0.247422680412371"; depth 97 ; unknown ; N/A GL192378.1 samtools variation 2048788 2048788 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192378.1 samtools variation 2048925 2048925 . . . alleles " T G"; frequencies " 0.742857142857143 0.257142857142857"; depth 70 ; unknown ; N/A GL192378.1 samtools variation 2050275 2050275 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192378.1 samtools variation 2051225 2051225 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192378.1 samtools variation 2051469 2051469 . . . alleles " C A"; frequencies " 0.585365853658537 0.365853658536585"; depth 41 ; unknown ; N/A GL192378.1 samtools variation 2051597 2051597 . . . alleles " G C"; frequencies " 0.576271186440678 0.423728813559322"; depth 59 ; known ; N/A GL192378.1 samtools variation 2052047 2052047 . . . alleles " A G"; frequencies " 0.330434782608696 0.669565217391304"; depth 115 ; known ; N/A GL192378.1 samtools variation 2052142 2052142 . . . alleles " G A"; frequencies " 0.628571428571429 0.371428571428571"; depth 70 ; unknown ; N/A GL192378.1 samtools variation 2052766 2052766 . . . alleles " T C"; frequencies " 0.751381215469613 0.248618784530387"; depth 181 ; unknown ; N/A GL192378.1 samtools variation 2054259 2054259 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192378.1 samtools variation 2054349 2054349 . . . alleles " A G"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL192378.1 samtools variation 2054560 2054560 . . . alleles " A G"; frequencies " 0.654545454545455 0.345454545454545"; depth 55 ; unknown ; N/A GL192378.1 samtools variation 2054792 2054792 . . . alleles " G C"; frequencies " 0.669833729216152 0.330166270783848"; depth 1263 ; unknown ; non-synonymous GL192378.1 samtools variation 2054902 2054902 . . . alleles " C T"; frequencies " 0.712871287128713 0.287128712871287"; depth 909 ; unknown ; synonymous GL192378.1 samtools variation 2055126 2055126 . . . alleles " T C"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192378.1 samtools variation 2055769 2055769 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 2055935 2055935 . . . alleles " T C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192378.1 samtools variation 2057220 2057220 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 2057307 2057307 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192378.1 samtools variation 2057356 2057356 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 2057872 2057872 . . . alleles " G T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 2057881 2057881 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 2058577 2058577 . . . alleles " T G"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192378.1 samtools variation 2058772 2058772 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 2059829 2059829 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192378.1 samtools variation 2060499 2060499 . . . alleles " T C"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; N/A GL192378.1 samtools variation 2060553 2060553 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192378.1 samtools variation 2060600 2060600 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL192378.1 samtools variation 2060705 2060705 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL192378.1 samtools variation 2060818 2060818 . . . alleles " G C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 2060905 2060905 . . . alleles " T A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192378.1 samtools variation 2060915 2060915 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192378.1 samtools variation 2061567 2061567 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 48 ; unknown ; N/A GL192378.1 samtools variation 2061633 2061633 . . . alleles " C T"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL192378.1 samtools variation 2062434 2062434 . . . alleles " T C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192378.1 samtools variation 2062714 2062714 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192378.1 samtools variation 2062715 2062715 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192378.1 samtools variation 2063899 2063899 . . . alleles " T A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192378.1 samtools variation 2064128 2064128 . . . alleles " G C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192378.1 samtools variation 2064243 2064243 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 2065201 2065201 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192378.1 samtools variation 2066167 2066167 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL192378.1 samtools variation 2067551 2067551 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192378.1 samtools variation 2070371 2070371 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192378.1 samtools variation 2070988 2070988 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192378.1 samtools variation 2072407 2072407 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192378.1 samtools variation 2073411 2073411 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 44 ; known ; N/A GL192378.1 samtools variation 2074303 2074303 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192378.1 samtools variation 2074396 2074396 . . . alleles " C T"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; known ; N/A GL192378.1 samtools variation 2074414 2074414 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192378.1 samtools variation 2074584 2074584 . . . alleles " G A"; frequencies " 0.751043115438109 0.248956884561892"; depth 719 ; unknown ; synonymous GL192378.1 samtools variation 2074729 2074729 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192378.1 samtools variation 2075010 2075010 . . . alleles " C T"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL192378.1 samtools variation 2076705 2076705 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192378.1 samtools variation 2076735 2076735 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192378.1 samtools variation 2076814 2076814 . . . alleles " T A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192378.1 samtools variation 2077707 2077707 . . . alleles " G A"; frequencies " 0.52046332046332 0.47953667953668"; depth 1295 ; unknown ; synonymous GL192378.1 samtools variation 2077768 2077768 . . . alleles " C G"; frequencies " 0.724137931034483 0.275862068965517"; depth 145 ; unknown ; N/A GL192378.1 samtools variation 2078087 2078087 . . . alleles " A G"; frequencies " 0.613636363636364 0.386363636363636"; depth 132 ; unknown ; N/A GL192378.1 samtools variation 2079338 2079338 . . . alleles " G A"; frequencies " 0.744694533762058 0.254662379421222"; depth 1555 ; unknown ; synonymous GL192378.1 samtools variation 2080925 2080925 . . . alleles " C T"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192378.1 samtools variation 2080926 2080926 . . . alleles " A G"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL192378.1 samtools variation 2080997 2080997 . . . alleles " G A"; frequencies " 0.620420888542479 0.378020265003897"; depth 1283 ; unknown ; synonymous GL192378.1 samtools variation 2081185 2081185 . . . alleles " T G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192378.1 samtools variation 2081317 2081317 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192378.1 samtools variation 2082579 2082579 . . . alleles " A G"; frequencies " 0.294117647058824 0.686274509803922"; depth 51 ; unknown ; N/A GL192378.1 samtools variation 2082656 2082656 . . . alleles " A G"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL192378.1 samtools variation 2082773 2082773 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192378.1 samtools variation 2082897 2082897 . . . alleles " G A"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; unknown ; N/A GL192378.1 samtools variation 2082997 2082997 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL192378.1 samtools variation 2083145 2083145 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; known ; N/A GL192378.1 samtools variation 2083308 2083308 . . . alleles " G T"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192378.1 samtools variation 2083985 2083985 . . . alleles " C A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192378.1 samtools variation 2084030 2084030 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192378.1 samtools variation 2084174 2084174 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 40 ; unknown ; N/A GL192378.1 samtools variation 2084233 2084233 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL192378.1 samtools variation 2084893 2084893 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 2086227 2086227 . . . alleles " T C"; frequencies " 0.579701120797011 0.420298879202989"; depth 1606 ; unknown ; synonymous GL192378.1 samtools variation 2086398 2086398 . . . alleles " T C"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; unknown ; N/A GL192378.1 samtools variation 2086710 2086710 . . . alleles " A T"; frequencies " 0.75609756097561 0.24390243902439"; depth 82 ; unknown ; N/A GL192378.1 samtools variation 2087911 2087911 . . . alleles " C A"; frequencies " 0.474576271186441 0.525423728813559"; depth 59 ; unknown ; N/A GL192378.1 samtools variation 2088253 2088253 . . . alleles " A G"; frequencies " 0.524590163934426 0.475409836065574"; depth 122 ; unknown ; N/A GL192378.1 samtools variation 2088441 2088441 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 165 ; unknown ; N/A GL192378.1 samtools variation 2088458 2088458 . . . alleles " A G"; frequencies " 0.561643835616438 0.438356164383562"; depth 146 ; unknown ; N/A GL192378.1 samtools variation 2089642 2089642 . . . alleles " G A"; frequencies " 0.535318559556787 0.463296398891967"; depth 1444 ; unknown ; synonymous GL192378.1 samtools variation 2089661 2089661 . . . alleles " G A"; frequencies " 0.539393939393939 0.460606060606061"; depth 1320 ; unknown ; non-synonymous GL192378.1 samtools variation 2089747 2089747 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192378.1 samtools variation 2090162 2090162 . . . alleles " A G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192378.1 samtools variation 2090225 2090225 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL192378.1 samtools variation 2090855 2090855 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL192378.1 samtools variation 2091396 2091396 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 2092411 2092411 . . . alleles " G A"; frequencies " 0.676641729010806 0.323358270989194"; depth 1203 ; known ; non-synonymous GL192378.1 samtools variation 2093000 2093000 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192378.1 samtools variation 2093018 2093018 . . . alleles " C T"; frequencies " 0.425 0.575"; depth 40 ; unknown ; N/A GL192378.1 samtools variation 2093134 2093134 . . . alleles " G T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192378.1 samtools variation 2093539 2093539 . . . alleles " G A"; frequencies " 0.746268656716418 0.253731343283582"; depth 67 ; unknown ; N/A GL192378.1 samtools variation 2093955 2093955 . . . alleles " A G"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL192378.1 samtools variation 2094082 2094082 . . . alleles " C G"; frequencies " 0.326086956521739 0.673913043478261"; depth 46 ; unknown ; N/A GL192378.1 samtools variation 2094363 2094363 . . . alleles " A T"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; unknown ; N/A GL192378.1 samtools variation 2094383 2094383 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192378.1 samtools variation 2094481 2094481 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192378.1 samtools variation 2094508 2094508 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192378.1 samtools variation 2094579 2094579 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192378.1 samtools variation 2094608 2094608 . . . alleles " T C"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; unknown ; N/A GL192378.1 samtools variation 2095028 2095028 . . . alleles " G A"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL192378.1 samtools variation 2095111 2095111 . . . alleles " G A"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; N/A GL192378.1 samtools variation 2095669 2095669 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; unknown ; N/A GL192378.1 samtools variation 2096122 2096122 . . . alleles " G A"; frequencies " 0.776859504132231 0.223140495867769"; depth 121 ; unknown ; N/A GL192378.1 samtools variation 2096227 2096227 . . . alleles " G A"; frequencies " 0.739583333333333 0.260416666666667"; depth 96 ; unknown ; N/A GL192378.1 samtools variation 2096288 2096288 . . . alleles " G A"; frequencies " 0.236842105263158 0.763157894736842"; depth 38 ; unknown ; N/A GL192378.1 samtools variation 2096840 2096840 . . . alleles " C T"; frequencies " 0.524590163934426 0.475409836065574"; depth 61 ; unknown ; N/A GL192378.1 samtools variation 2097540 2097540 . . . alleles " A C"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL192378.1 samtools variation 2097564 2097564 . . . alleles " C T"; frequencies " 0.390243902439024 0.609756097560976"; depth 41 ; unknown ; N/A GL192378.1 samtools variation 2097893 2097893 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192378.1 samtools variation 2098050 2098050 . . . alleles " C G"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; unknown ; N/A GL192378.1 samtools variation 2098244 2098244 . . . alleles " G C"; frequencies " 0.556603773584906 0.443396226415094"; depth 106 ; unknown ; N/A GL192378.1 samtools variation 2098246 2098246 . . . alleles " C T"; frequencies " 0.560747663551402 0.439252336448598"; depth 107 ; unknown ; N/A GL192378.1 samtools variation 2098458 2098458 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 44 ; unknown ; N/A GL192378.1 samtools variation 2098536 2098536 . . . alleles " T C"; frequencies " 0.237113402061856 0.762886597938144"; depth 97 ; unknown ; N/A GL192378.1 samtools variation 2100497 2100497 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 2100585 2100585 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 2100759 2100759 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL192378.1 samtools variation 2100842 2100842 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192378.1 samtools variation 2100928 2100928 . . . alleles " G T"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL192378.1 samtools variation 2101304 2101304 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192378.1 samtools variation 2101955 2101955 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192378.1 samtools variation 2102002 2102002 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192378.1 samtools variation 2102046 2102046 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192378.1 samtools variation 2102216 2102216 . . . alleles " T C"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL192378.1 samtools variation 2102421 2102421 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; unknown ; N/A GL192378.1 samtools variation 2102506 2102506 . . . alleles " A G"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; unknown ; N/A GL192378.1 samtools variation 2102590 2102590 . . . alleles " C G"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; known ; N/A GL192378.1 samtools variation 2103774 2103774 . . . alleles " G C"; frequencies " 0.533256880733945 0.466743119266055"; depth 872 ; unknown ; non-synonymous GL192378.1 samtools variation 2104936 2104936 . . . alleles " G A"; frequencies " 0.479012345679012 0.520987654320988"; depth 1215 ; unknown ; synonymous GL192378.1 samtools variation 2105281 2105281 . . . alleles " G T"; frequencies " 0.51063829787234 0.48936170212766"; depth 94 ; unknown ; N/A GL192378.1 samtools variation 2106142 2106142 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192378.1 samtools variation 2106263 2106263 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 2107626 2107626 . . . alleles " A G"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192378.1 samtools variation 2111268 2111268 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192378.1 samtools variation 2112164 2112164 . . . alleles " G A"; frequencies " 0.212936046511628 0.787063953488372"; depth 1376 ; known ; synonymous GL192378.1 samtools variation 2112283 2112283 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; known ; N/A GL192378.1 samtools variation 2112412 2112412 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192378.1 samtools variation 2113729 2113729 . . . alleles " C T"; frequencies " 0.752071383046526 0.247928616953474"; depth 1569 ; known ; synonymous GL192378.1 samtools variation 2113762 2113762 . . . alleles " T C"; frequencies " 0.296517412935323 0.703482587064677"; depth 1005 ; known ; N/A GL192378.1 samtools variation 2114318 2114318 . . . alleles " A G"; frequencies " 0.799136069114471 0.200863930885529"; depth 463 ; known ; N/A GL192378.1 samtools variation 2114355 2114355 . . . alleles " C T"; frequencies " 0.697478991596639 0.302521008403361"; depth 595 ; unknown ; N/A GL192378.1 samtools variation 2114538 2114538 . . . alleles " C T"; frequencies " 0.78488982161595 0.21511017838405"; depth 953 ; known ; N/A GL192378.1 samtools variation 2114545 2114545 . . . alleles " C T"; frequencies " 0.752564102564103 0.247435897435897"; depth 780 ; known ; N/A GL192378.1 samtools variation 2114675 2114675 . . . alleles " G A"; frequencies " 0.696245733788396 0.303754266211604"; depth 293 ; known ; N/A GL192378.1 samtools variation 2115279 2115279 . . . alleles " G A"; frequencies " 0.737642585551331 0.262357414448669"; depth 1315 ; known ; N/A GL192378.1 samtools variation 2115793 2115793 . . . alleles " G A"; frequencies " 0.370036101083032 0.629963898916967"; depth 1108 ; known ; N/A GL192378.1 samtools variation 2115811 2115811 . . . alleles " T C"; frequencies " 0.50109409190372 0.49671772428884"; depth 457 ; known ; N/A GL192378.1 samtools variation 2116260 2116260 . . . alleles " C T"; frequencies " 0.475300400534045 0.524699599465955"; depth 749 ; unknown ; N/A GL192378.1 samtools variation 2116261 2116261 . . . alleles " G A"; frequencies " 0.470350404312668 0.529649595687331"; depth 742 ; unknown ; N/A GL192378.1 samtools variation 2116400 2116400 . . . alleles " T A"; frequencies " 0.345441595441595 0.653846153846154"; depth 1404 ; known ; N/A GL192378.1 samtools variation 2116456 2116456 . . . alleles " T C"; frequencies " 0.651770168311085 0.348229831688915"; depth 1723 ; known ; N/A GL192378.1 samtools variation 2116495 2116495 . . . alleles " C T"; frequencies " 0.67037037037037 0.32962962962963"; depth 1890 ; known ; N/A GL192378.1 samtools variation 2116832 2116832 . . . alleles " T G"; frequencies " 0.300534759358289 0.699465240641711"; depth 935 ; known ; N/A GL192378.1 samtools variation 2116864 2116864 . . . alleles " G T"; frequencies " 0.304007820136852 0.695992179863148"; depth 1023 ; known ; N/A GL192378.1 samtools variation 2116924 2116924 . . . alleles " A G"; frequencies " 0.323770491803279 0.674863387978142"; depth 732 ; known ; N/A GL192378.1 samtools variation 2117015 2117015 . . . alleles " T C"; frequencies " 0.730188679245283 0.269811320754717"; depth 1060 ; known ; N/A GL192378.1 samtools variation 2117125 2117125 . . . alleles " C T"; frequencies " 0.642675698560542 0.357324301439458"; depth 1181 ; known ; N/A GL192378.1 samtools variation 2117162 2117162 . . . alleles " T A"; frequencies " 0.356748224151539 0.643251775848461"; depth 1267 ; known ; N/A GL192378.1 samtools variation 2117438 2117438 . . . alleles " A G"; frequencies " 0.361134995700774 0.638865004299226"; depth 1163 ; known ; N/A GL192378.1 samtools variation 2117724 2117724 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 1696 ; known ; N/A GL192378.1 samtools variation 2117904 2117904 . . . alleles " C T"; frequencies " 0.424242424242424 0.575757575757576"; depth 231 ; known ; N/A GL192378.1 samtools variation 2117988 2117988 . . . alleles " T C"; frequencies " 0.519230769230769 0.480769230769231"; depth 156 ; known ; N/A GL192378.1 samtools variation 2118115 2118115 . . . alleles " G A"; frequencies " 0.5125 0.4875"; depth 80 ; known ; N/A GL192378.1 samtools variation 2118129 2118129 . . . alleles " T C"; frequencies " 0.490566037735849 0.509433962264151"; depth 53 ; known ; N/A GL192378.1 samtools variation 2119695 2119695 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192378.1 samtools variation 2119704 2119704 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 2954721 2954721 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192378.1 samtools variation 2958151 2958151 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192378.1 samtools variation 2959110 2959110 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192378.1 samtools variation 2964508 2964508 . . . alleles " A C"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL192378.1 samtools variation 2966687 2966687 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192378.1 samtools variation 2966770 2966770 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 24 ; known ; N/A GL192378.1 samtools variation 2968997 2968997 . . . alleles " G A"; frequencies " 0.256410256410256 0.743589743589744"; depth 39 ; known ; N/A GL192378.1 samtools variation 2969791 2969791 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 48 ; unknown ; N/A GL192378.1 samtools variation 2970568 2970568 . . . alleles " C T"; frequencies " 0.355371900826446 0.644628099173554"; depth 121 ; known ; N/A GL192378.1 samtools variation 2973523 2973523 . . . alleles " C G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192378.1 samtools variation 2980774 2980774 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 2986986 2986986 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192378.1 samtools variation 2987467 2987467 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192378.1 samtools variation 2994889 2994889 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192378.1 samtools variation 2997722 2997722 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192378.1 samtools variation 3012395 3012395 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192378.1 samtools variation 3016299 3016299 . . . alleles " C A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192378.1 samtools variation 3025687 3025687 . . . alleles " G A"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; N/A GL192378.1 samtools variation 3030421 3030421 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192378.1 samtools variation 3032270 3032270 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192378.1 samtools variation 3046211 3046211 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192378.1 samtools variation 3046418 3046418 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192378.1 samtools variation 3048072 3048072 . . . alleles " G C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192378.1 samtools variation 3050737 3050737 . . . alleles " C T"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL192378.1 samtools variation 3055280 3055280 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192378.1 samtools variation 3062582 3062582 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192378.1 samtools variation 3063113 3063113 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 3068416 3068416 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192378.1 samtools variation 3069085 3069085 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192378.1 samtools variation 3069292 3069292 . . . alleles " A G"; frequencies " 0.596273291925466 0.403726708074534"; depth 161 ; unknown ; synonymous GL192378.1 samtools variation 3069669 3069669 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192378.1 samtools variation 3069993 3069993 . . . alleles " G T"; frequencies " 0.557692307692308 0.442307692307692"; depth 52 ; known ; N/A GL192378.1 samtools variation 3070856 3070856 . . . alleles " C T"; frequencies " 0.737704918032787 0.262295081967213"; depth 122 ; unknown ; synonymous GL192378.1 samtools variation 3071841 3071841 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 3075891 3075891 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 3077979 3077979 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192378.1 samtools variation 3078016 3078016 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192378.1 samtools variation 3082175 3082175 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192378.1 samtools variation 3083334 3083334 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 112 ; unknown ; N/A GL192378.1 samtools variation 3083438 3083438 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL192378.1 samtools variation 3085223 3085223 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192378.1 samtools variation 3085663 3085663 . . . alleles " T C"; frequencies " 0.779141104294479 0.220858895705521"; depth 163 ; unknown ; N/A GL192378.1 samtools variation 3085866 3085866 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 90 ; unknown ; N/A GL192378.1 samtools variation 3086444 3086444 . . . alleles " A C"; frequencies " 0.742690058479532 0.257309941520468"; depth 171 ; unknown ; N/A GL192378.1 samtools variation 3087697 3087697 . . . alleles " C G"; frequencies " 0.718181818181818 0.281818181818182"; depth 110 ; unknown ; N/A GL192378.1 samtools variation 3087750 3087750 . . . alleles " C T"; frequencies " 0.261682242990654 0.728971962616822"; depth 107 ; known ; N/A GL192378.1 samtools variation 3089527 3089527 . . . alleles " A G"; frequencies " 0.689393939393939 0.310606060606061"; depth 132 ; unknown ; N/A GL192378.1 samtools variation 3090055 3090055 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192378.1 samtools variation 3126433 3126433 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 64 ; unknown ; N/A GL192378.1 samtools variation 3280643 3280643 . . . alleles " G A"; frequencies " 0.725405405405405 0.274594594594595"; depth 1850 ; unknown ; synonymous GL192378.1 samtools variation 3281068 3281068 . . . alleles " G A"; frequencies " 0.762997974341661 0.237002025658339"; depth 1481 ; unknown ; synonymous GL192378.1 samtools variation 3282014 3282014 . . . alleles " T C"; frequencies " 0.685714285714286 0.3125"; depth 560 ; unknown ; synonymous GL192378.1 samtools variation 3283211 3283211 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 3284365 3284365 . . . alleles " T G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192378.1 samtools variation 3529493 3529493 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 30 ; unknown ; N/A GL192378.1 samtools variation 3529534 3529534 . . . alleles " T C"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; unknown ; N/A GL192378.1 samtools variation 3568150 3568150 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192378.1 samtools variation 3581764 3581764 . . . alleles " C A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192378.1 samtools variation 3584550 3584550 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 3585248 3585248 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192378.1 samtools variation 3585528 3585528 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 3587005 3587005 . . . alleles " G C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192378.1 samtools variation 3587332 3587332 . . . alleles " G C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192378.1 samtools variation 3587421 3587421 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192378.1 samtools variation 3630054 3630054 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192378.1 samtools variation 3652972 3652972 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 3669367 3669367 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192378.1 samtools variation 3738238 3738238 . . . alleles " C G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192378.1 samtools variation 3743949 3743949 . . . alleles " A G"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; known ; N/A GL192378.1 samtools variation 3744464 3744464 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192378.1 samtools variation 3745707 3745707 . . . alleles " T G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192378.1 samtools variation 3747283 3747283 . . . alleles " A T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192378.1 samtools variation 3747777 3747777 . . . alleles " T C"; frequencies " 0.347107438016529 0.652892561983471"; depth 121 ; known ; N/A GL192378.1 samtools variation 3748196 3748196 . . . alleles " G A"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; unknown ; N/A GL192378.1 samtools variation 3748212 3748212 . . . alleles " C T"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL192378.1 samtools variation 3748801 3748801 . . . alleles " C G"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL192378.1 samtools variation 3748965 3748965 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 46 ; known ; N/A GL192378.1 samtools variation 3749994 3749994 . . . alleles " C T"; frequencies " 0.720588235294118 0.279411764705882"; depth 68 ; unknown ; N/A GL192378.1 samtools variation 3751615 3751615 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 69 ; known ; N/A GL192378.1 samtools variation 3753031 3753031 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192378.1 samtools variation 3753109 3753109 . . . alleles " G C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192378.1 samtools variation 3753457 3753457 . . . alleles " G C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 3754323 3754323 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192378.1 samtools variation 3837382 3837382 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192378.1 samtools variation 3838351 3838351 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; known ; synonymous GL192379.1 samtools variation 146033 146033 . . . alleles " G T"; frequencies " 0.586538461538462 0.413461538461538"; depth 104 ; known ; non-synonymous GL192379.1 samtools variation 150710 150710 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192379.1 samtools variation 151058 151058 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; known ; N/A GL192379.1 samtools variation 152848 152848 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192379.1 samtools variation 163729 163729 . . . alleles " T C"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; known ; N/A GL192379.1 samtools variation 165477 165477 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192379.1 samtools variation 210803 210803 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192379.1 samtools variation 230218 230218 . . . alleles " C G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192379.1 samtools variation 232594 232594 . . . alleles " G A"; frequencies " 0.734375 0.265625"; depth 64 ; unknown ; N/A GL192379.1 samtools variation 232633 232633 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL192379.1 samtools variation 234605 234605 . . . alleles " G C"; frequencies " 0.263508512213175 0.735751295336788"; depth 1351 ; known ; N/A GL192379.1 samtools variation 240492 240492 . . . alleles " G A"; frequencies " 0.704 0.296"; depth 125 ; unknown ; N/A GL192379.1 samtools variation 240874 240874 . . . alleles " G A"; frequencies " 0.494339622641509 0.505660377358491"; depth 265 ; unknown ; N/A GL192379.1 samtools variation 240913 240913 . . . alleles " C G"; frequencies " 0.257142857142857 0.742857142857143"; depth 70 ; known ; N/A GL192379.1 samtools variation 241945 241945 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192379.1 samtools variation 242860 242860 . . . alleles " A G"; frequencies " 0.742268041237113 0.257731958762887"; depth 97 ; known ; N/A GL192379.1 samtools variation 244837 244837 . . . alleles " T A"; frequencies " 0.798561151079137 0.201438848920863"; depth 278 ; unknown ; N/A GL192379.1 samtools variation 247356 247356 . . . alleles " G A"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL192379.1 samtools variation 247592 247592 . . . alleles " G A"; frequencies " 0.269498069498069 0.73050193050193"; depth 1295 ; known ; synonymous GL192379.1 samtools variation 250793 250793 . . . alleles " T C"; frequencies " 0.265822784810127 0.734177215189873"; depth 79 ; known ; N/A GL192379.1 samtools variation 254330 254330 . . . alleles " C T"; frequencies " 0.236363636363636 0.763636363636364"; depth 55 ; known ; N/A GL192379.1 samtools variation 255615 255615 . . . alleles " G T"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; known ; N/A GL192379.1 samtools variation 1031701 1031701 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; synonymous GL192379.1 samtools variation 1032107 1032107 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; non-synonymous GL192379.1 samtools variation 1032290 1032290 . . . alleles " G A"; frequencies " 0.744186046511628 0.255813953488372"; depth 43 ; unknown ; non-synonymous GL192379.1 samtools variation 1380593 1380593 . . . alleles " G C"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL192379.1 samtools variation 1382548 1382548 . . . alleles " T C"; frequencies " 0.408163265306122 0.591836734693878"; depth 196 ; known ; synonymous GL192379.1 samtools variation 1383066 1383066 . . . alleles " C T"; frequencies " 0.471042471042471 0.528957528957529"; depth 259 ; known ; N/A GL192379.1 samtools variation 1384176 1384176 . . . alleles " C T"; frequencies " 0.656779661016949 0.343220338983051"; depth 236 ; known ; N/A GL192379.1 samtools variation 1384342 1384342 . . . alleles " C T"; frequencies " 0.64 0.36"; depth 175 ; known ; N/A GL192379.1 samtools variation 1384916 1384916 . . . alleles " C T"; frequencies " 0.463768115942029 0.536231884057971"; depth 69 ; known ; N/A GL192379.1 samtools variation 1848567 1848567 . . . alleles " A T"; frequencies " 0.773584905660377 0.226415094339623"; depth 53 ; unknown ; synonymous GL192379.1 samtools variation 2078445 2078445 . . . alleles " A G"; frequencies " 0.390243902439024 0.609756097560976"; depth 82 ; known ; non-synonymous GL192379.1 samtools variation 2080389 2080389 . . . alleles " G A"; frequencies " 0.69811320754717 0.30188679245283"; depth 53 ; unknown ; synonymous GL192379.1 samtools variation 2081466 2081466 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 40 ; known ; N/A GL192379.1 samtools variation 2083348 2083348 . . . alleles " C A"; frequencies " 0.339366515837104 0.660633484162896"; depth 221 ; known ; N/A GL192379.1 samtools variation 2084779 2084779 . . . alleles " C G"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; known ; N/A GL192379.1 samtools variation 2085801 2085801 . . . alleles " G A"; frequencies " 0.641463414634146 0.358536585365854"; depth 410 ; known ; synonymous GL192379.1 samtools variation 2094778 2094778 . . . alleles " G C"; frequencies " 0.221238938053097 0.778761061946903"; depth 113 ; known ; non-synonymous GL192379.1 samtools variation 2108053 2108053 . . . alleles " T A"; frequencies " 0.779411764705882 0.220588235294118"; depth 68 ; unknown ; synonymous GL192379.1 samtools variation 2171162 2171162 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192379.1 samtools variation 2227017 2227017 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192379.1 samtools variation 2227503 2227503 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 40 ; known ; N/A GL192379.1 samtools variation 2469645 2469645 . . . alleles " T C"; frequencies " 0.44 0.56"; depth 25 ; known ; N/A GL192379.1 samtools variation 2605675 2605675 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 25 ; known ; N/A GL192379.1 samtools variation 2843499 2843499 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192379.1 samtools variation 2854613 2854613 . . . alleles " C T"; frequencies " 0.543147208121827 0.456852791878173"; depth 197 ; unknown ; synonymous GL192379.1 samtools variation 2854918 2854918 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 70 ; unknown ; synonymous GL192379.1 samtools variation 2855547 2855547 . . . alleles " T C"; frequencies " 0.565217391304348 0.434782608695652"; depth 46 ; unknown ; N/A GL192379.1 samtools variation 2855616 2855616 . . . alleles " A G"; frequencies " 0.607843137254902 0.392156862745098"; depth 51 ; unknown ; N/A GL192379.1 samtools variation 2856931 2856931 . . . alleles " A G"; frequencies " 0.655737704918033 0.340163934426229"; depth 488 ; unknown ; synonymous GL192379.1 samtools variation 2857235 2857235 . . . alleles " G A"; frequencies " 0.643031784841076 0.356968215158924"; depth 409 ; unknown ; N/A GL192379.1 samtools variation 2857678 2857678 . . . alleles " G A"; frequencies " 0.774647887323944 0.225352112676056"; depth 71 ; unknown ; N/A GL192379.1 samtools variation 2857935 2857935 . . . alleles " G A"; frequencies " 0.701298701298701 0.298701298701299"; depth 77 ; unknown ; N/A GL192379.1 samtools variation 2860584 2860584 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192379.1 samtools variation 3006059 3006059 . . . alleles " T C"; frequencies " 0.377777777777778 0.622222222222222"; depth 135 ; known ; synonymous GL192379.1 samtools variation 3006737 3006737 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192379.1 samtools variation 3007145 3007145 . . . alleles " C T"; frequencies " 0.651851851851852 0.348148148148148"; depth 135 ; known ; synonymous GL192379.1 samtools variation 3007660 3007660 . . . alleles " G A"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; known ; N/A GL192379.1 samtools variation 3008748 3008748 . . . alleles " G A"; frequencies " 0.731034482758621 0.268965517241379"; depth 145 ; unknown ; synonymous GL192379.1 samtools variation 3022445 3022445 . . . alleles " T G"; frequencies " 0.403225806451613 0.596774193548387"; depth 62 ; unknown ; N/A GL192379.1 samtools variation 3026086 3026086 . . . alleles " A T"; frequencies " 0.554545454545455 0.445454545454545"; depth 110 ; unknown ; N/A GL192379.1 samtools variation 3072683 3072683 . . . alleles " T C"; frequencies " 0.469387755102041 0.530612244897959"; depth 98 ; known ; synonymous GL192379.1 samtools variation 3425749 3425749 . . . alleles " A C"; frequencies " 0.361702127659574 0.638297872340426"; depth 47 ; known ; N/A GL192379.1 samtools variation 3720565 3720565 . . . alleles " A G"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL192379.1 samtools variation 3720632 3720632 . . . alleles " C T"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; unknown ; N/A GL192379.1 samtools variation 3720649 3720649 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; unknown ; N/A GL192379.1 samtools variation 3721288 3721288 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192379.1 samtools variation 3726218 3726218 . . . alleles " A G"; frequencies " 0.431034482758621 0.568965517241379"; depth 58 ; unknown ; N/A GL192379.1 samtools variation 3727148 3727148 . . . alleles " G T"; frequencies " 0.361904761904762 0.638095238095238"; depth 105 ; unknown ; N/A GL192379.1 samtools variation 3727516 3727516 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192379.1 samtools variation 3727934 3727934 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; N/A GL192379.1 samtools variation 3728784 3728784 . . . alleles " T C"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL192379.1 samtools variation 3731148 3731148 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192379.1 samtools variation 3731821 3731821 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 54 ; unknown ; N/A GL192379.1 samtools variation 3732748 3732748 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192379.1 samtools variation 3734264 3734264 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192379.1 samtools variation 3734593 3734593 . . . alleles " A G"; frequencies " 0.21875 0.78125"; depth 32 ; unknown ; N/A GL192380.1 samtools variation 1411 1411 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192380.1 samtools variation 1414 1414 . . . alleles " T A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192380.1 samtools variation 1513 1513 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL192380.1 samtools variation 1775 1775 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192380.1 samtools variation 2101 2101 . . . alleles " C T"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; unknown ; N/A GL192380.1 samtools variation 2339 2339 . . . alleles " C A"; frequencies " 0.4375 0.5625"; depth 48 ; unknown ; N/A GL192380.1 samtools variation 3023 3023 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192380.1 samtools variation 3462 3462 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192380.1 samtools variation 5811 5811 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192380.1 samtools variation 5988 5988 . . . alleles " G C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192380.1 samtools variation 5995 5995 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL192380.1 samtools variation 6031 6031 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192380.1 samtools variation 6257 6257 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192380.1 samtools variation 6951 6951 . . . alleles " G T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192380.1 samtools variation 10544 10544 . . . alleles " A G"; frequencies " 0.358974358974359 0.641025641025641"; depth 39 ; unknown ; N/A GL192380.1 samtools variation 10973 10973 . . . alleles " C T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL192380.1 samtools variation 13278 13278 . . . alleles " A C"; frequencies " 0.299145299145299 0.700854700854701"; depth 234 ; unknown ; non-synonymous GL192380.1 samtools variation 40011 40011 . . . alleles " C T"; frequencies " 0.369565217391304 0.630434782608696"; depth 46 ; unknown ; non-synonymous GL192380.1 samtools variation 40042 40042 . . . alleles " T C"; frequencies " 0.227272727272727 0.772727272727273"; depth 66 ; unknown ; synonymous GL192380.1 samtools variation 51734 51734 . . . alleles " C A"; frequencies " 0.26271186440678 0.73728813559322"; depth 236 ; unknown ; N/A GL192380.1 samtools variation 104829 104829 . . . alleles " A G"; frequencies " 0.741784037558685 0.258215962441315"; depth 213 ; unknown ; N/A GL192380.1 samtools variation 115658 115658 . . . alleles " C T"; frequencies " 0.740350877192982 0.259649122807018"; depth 285 ; known ; non-synonymous GL192380.1 samtools variation 144926 144926 . . . alleles " G A"; frequencies " 0.786666666666667 0.213333333333333"; depth 75 ; unknown ; N/A GL192380.1 samtools variation 144932 144932 . . . alleles " C G"; frequencies " 0.780821917808219 0.219178082191781"; depth 73 ; unknown ; N/A GL192380.1 samtools variation 455653 455653 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192380.1 samtools variation 458075 458075 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL192380.1 samtools variation 458089 458089 . . . alleles " A G"; frequencies " 0.359375 0.640625"; depth 64 ; known ; N/A GL192380.1 samtools variation 482779 482779 . . . alleles " C T"; frequencies " 0.795620437956204 0.204379562043796"; depth 137 ; unknown ; synonymous GL192380.1 samtools variation 500865 500865 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192380.1 samtools variation 529549 529549 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 50 ; known ; non-synonymous GL192380.1 samtools variation 587421 587421 . . . alleles " C T"; frequencies " 0.552238805970149 0.447761194029851"; depth 67 ; unknown ; non-synonymous GL192380.1 samtools variation 1358826 1358826 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL192380.1 samtools variation 1358890 1358890 . . . alleles " C T"; frequencies " 0.659574468085106 0.340425531914894"; depth 47 ; known ; N/A GL192380.1 samtools variation 1359220 1359220 . . . alleles " G T"; frequencies " 0.604166666666667 0.395833333333333"; depth 48 ; unknown ; N/A GL192380.1 samtools variation 1359221 1359221 . . . alleles " G T"; frequencies " 0.612244897959184 0.387755102040816"; depth 49 ; unknown ; N/A GL192380.1 samtools variation 1359924 1359924 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 96 ; unknown ; N/A GL192380.1 samtools variation 1559461 1559461 . . . alleles " A G"; frequencies " 0.708542713567839 0.291457286432161"; depth 199 ; unknown ; synonymous GL192381.1 samtools variation 661657 661657 . . . alleles " T C"; frequencies " 0.722627737226277 0.277372262773723"; depth 137 ; unknown ; non-synonymous GL192381.1 samtools variation 661685 661685 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 125 ; known ; synonymous GL192381.1 samtools variation 670257 670257 . . . alleles " C T"; frequencies " 0.728813559322034 0.271186440677966"; depth 118 ; unknown ; synonymous GL192381.1 samtools variation 977718 977718 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192381.1 samtools variation 1042053 1042053 . . . alleles " T G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192381.1 samtools variation 1064034 1064034 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192381.1 samtools variation 1158077 1158077 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL192381.1 samtools variation 1184449 1184449 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192381.1 samtools variation 1185496 1185496 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192381.1 samtools variation 1189505 1189505 . . . alleles " T C"; frequencies " 0.668896321070234 0.331103678929766"; depth 299 ; known ; N/A GL192381.1 samtools variation 1201937 1201937 . . . alleles " G C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192381.1 samtools variation 1202441 1202441 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192381.1 samtools variation 1298573 1298573 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192381.1 samtools variation 1303969 1303969 . . . alleles " C T"; frequencies " 0.487684729064039 0.512315270935961"; depth 406 ; known ; N/A GL192381.1 samtools variation 1304406 1304406 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192381.1 samtools variation 1311016 1311016 . . . alleles " G T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192381.1 samtools variation 1452761 1452761 . . . alleles " G A"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL192381.1 samtools variation 1452938 1452938 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192381.1 samtools variation 1459725 1459725 . . . alleles " T C"; frequencies " 0.337837837837838 0.662162162162162"; depth 74 ; known ; N/A GL192381.1 samtools variation 1460806 1460806 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192381.1 samtools variation 1461944 1461944 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 28 ; known ; N/A GL192381.1 samtools variation 1467215 1467215 . . . alleles " G A"; frequencies " 0.661538461538462 0.338461538461538"; depth 325 ; unknown ; non-synonymous GL192381.1 samtools variation 1475351 1475351 . . . alleles " C T"; frequencies " 0.721915285451197 0.278084714548803"; depth 1086 ; unknown ; synonymous GL192381.1 samtools variation 1507637 1507637 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192381.1 samtools variation 1509040 1509040 . . . alleles " G A"; frequencies " 0.564102564102564 0.435897435897436"; depth 39 ; known ; N/A GL192381.1 samtools variation 1527534 1527534 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 78 ; known ; N/A GL192381.1 samtools variation 1583265 1583265 . . . alleles " C A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192381.1 samtools variation 1640599 1640599 . . . alleles " G A"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; synonymous GL192381.1 samtools variation 1651271 1651271 . . . alleles " A G"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; N/A GL192381.1 samtools variation 1657245 1657245 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 165 ; known ; synonymous GL192381.1 samtools variation 1660350 1660350 . . . alleles " T C"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; unknown ; N/A GL192381.1 samtools variation 1685229 1685229 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192381.1 samtools variation 1685885 1685885 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192381.1 samtools variation 1691641 1691641 . . . alleles " C T"; frequencies " 0.78 0.22"; depth 50 ; unknown ; N/A GL192381.1 samtools variation 1692460 1692460 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 48 ; unknown ; N/A GL192381.1 samtools variation 1693093 1693093 . . . alleles " T C"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL192381.1 samtools variation 1733840 1733840 . . . alleles " G A"; frequencies " 0.557894736842105 0.431578947368421"; depth 95 ; known ; synonymous GL192381.1 samtools variation 1769393 1769393 . . . alleles " A G"; frequencies " 0.756756756756757 0.243243243243243"; depth 111 ; unknown ; N/A GL192381.1 samtools variation 1805277 1805277 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192381.1 samtools variation 1811236 1811236 . . . alleles " G A"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; known ; non-synonymous GL192381.1 samtools variation 1811385 1811385 . . . alleles " G A"; frequencies " 0.479166666666667 0.520833333333333"; depth 48 ; known ; non-synonymous GL192381.1 samtools variation 1812483 1812483 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 44 ; known ; synonymous GL192381.1 samtools variation 1812518 1812518 . . . alleles " C T"; frequencies " 0.53125 0.46875"; depth 32 ; known ; non-synonymous GL192381.1 samtools variation 1816194 1816194 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; non-synonymous GL192381.1 samtools variation 1919565 1919565 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192381.1 samtools variation 1922877 1922877 . . . alleles " C G"; frequencies " 0.642857142857143 0.342857142857143"; depth 70 ; unknown ; N/A GL192381.1 samtools variation 1928549 1928549 . . . alleles " C T"; frequencies " 0.607843137254902 0.392156862745098"; depth 102 ; unknown ; non-synonymous GL192381.1 samtools variation 1933441 1933441 . . . alleles " G A"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; synonymous GL192381.1 samtools variation 1934919 1934919 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192381.1 samtools variation 1935963 1935963 . . . alleles " A G"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; known ; N/A GL192381.1 samtools variation 1937854 1937854 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; synonymous GL192381.1 samtools variation 1938478 1938478 . . . alleles " C T"; frequencies " 0.607142857142857 0.392857142857143"; depth 56 ; known ; synonymous GL192381.1 samtools variation 2577742 2577742 . . . alleles " A C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192382.1 samtools variation 1064235 1064235 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192382.1 samtools variation 1252200 1252200 . . . alleles " A G"; frequencies " 0.637931034482759 0.362068965517241"; depth 58 ; unknown ; N/A GL192382.1 samtools variation 1252981 1252981 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192382.1 samtools variation 1253258 1253258 . . . alleles " C A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192382.1 samtools variation 1253764 1253764 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192382.1 samtools variation 1255120 1255120 . . . alleles " C T"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; unknown ; N/A GL192382.1 samtools variation 1255129 1255129 . . . alleles " A G"; frequencies " 0.783333333333333 0.216666666666667"; depth 60 ; unknown ; N/A GL192382.1 samtools variation 1255139 1255139 . . . alleles " A G"; frequencies " 0.666666666666667 0.315789473684211"; depth 57 ; unknown ; N/A GL192382.1 samtools variation 1256026 1256026 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192382.1 samtools variation 1256365 1256365 . . . alleles " G C"; frequencies " 0.73972602739726 0.26027397260274"; depth 73 ; unknown ; N/A GL192382.1 samtools variation 1739841 1739841 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 15 ; unknown ; synonymous GL192382.1 samtools variation 1745654 1745654 . . . alleles " C A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192382.1 samtools variation 1745735 1745735 . . . alleles " C G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192382.1 samtools variation 1761778 1761778 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; synonymous GL192382.1 samtools variation 1969213 1969213 . . . alleles " C T"; frequencies " 0.738703339882122 0.261296660117878"; depth 1018 ; unknown ; synonymous GL192382.1 samtools variation 1969219 1969219 . . . alleles " C T"; frequencies " 0.752302968270215 0.247697031729785"; depth 977 ; unknown ; synonymous GL192382.1 samtools variation 1969461 1969461 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192382.1 samtools variation 1969510 1969510 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL192382.1 samtools variation 1973437 1973437 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192382.1 samtools variation 1973519 1973519 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192382.1 samtools variation 1973876 1973876 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192382.1 samtools variation 1974040 1974040 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192382.1 samtools variation 1974734 1974734 . . . alleles " T A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192382.1 samtools variation 1974894 1974894 . . . alleles " G A"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192382.1 samtools variation 1974939 1974939 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192382.1 samtools variation 1980665 1980665 . . . alleles " G A"; frequencies " 0.468085106382979 0.531914893617021"; depth 47 ; unknown ; N/A GL192382.1 samtools variation 1980767 1980767 . . . alleles " A G"; frequencies " 0.525252525252525 0.474747474747475"; depth 99 ; unknown ; N/A GL192382.1 samtools variation 1980981 1980981 . . . alleles " T C"; frequencies " 0.637931034482759 0.362068965517241"; depth 58 ; unknown ; N/A GL192382.1 samtools variation 1980989 1980989 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 70 ; unknown ; N/A GL192382.1 samtools variation 1988409 1988409 . . . alleles " C T"; frequencies " 0.669565217391304 0.330434782608696"; depth 115 ; unknown ; synonymous GL192382.1 samtools variation 1991570 1991570 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 57 ; unknown ; synonymous GL192382.1 samtools variation 1993078 1993078 . . . alleles " C T"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; unknown ; synonymous GL192382.1 samtools variation 2017613 2017613 . . . alleles " G C"; frequencies " 0.209302325581395 0.790697674418605"; depth 86 ; known ; N/A GL192382.1 samtools variation 2018888 2018888 . . . alleles " C T"; frequencies " 0.259259259259259 0.740740740740741"; depth 81 ; known ; N/A GL192382.1 samtools variation 2018894 2018894 . . . alleles " G A"; frequencies " 0.241379310344828 0.758620689655172"; depth 87 ; known ; N/A GL192382.1 samtools variation 2019940 2019940 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192382.1 samtools variation 2020659 2020659 . . . alleles " A G"; frequencies " 0.229074889867841 0.770925110132159"; depth 227 ; known ; N/A GL192382.1 samtools variation 2044994 2044994 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192382.1 samtools variation 2169388 2169388 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192382.1 samtools variation 2169622 2169622 . . . alleles " T C"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192382.1 samtools variation 2650571 2650571 . . . alleles " G A"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL192382.1 samtools variation 2650717 2650717 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192382.1 samtools variation 2698620 2698620 . . . alleles " C T"; frequencies " 0.788732394366197 0.211267605633803"; depth 71 ; unknown ; N/A GL192382.1 samtools variation 2706571 2706571 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192382.1 samtools variation 2706787 2706787 . . . alleles " C T"; frequencies " 0.525 0.475"; depth 40 ; unknown ; N/A GL192382.1 samtools variation 2715419 2715419 . . . alleles " C T"; frequencies " 0.697674418604651 0.302325581395349"; depth 43 ; unknown ; N/A GL192382.1 samtools variation 2746703 2746703 . . . alleles " C G"; frequencies " 0.796875 0.203125"; depth 64 ; known ; non-synonymous GL192382.1 samtools variation 2746716 2746716 . . . alleles " T C"; frequencies " 0.787234042553192 0.212765957446809"; depth 47 ; known ; non-synonymous GL192382.1 samtools variation 2747118 2747118 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; non-synonymous GL192382.1 samtools variation 2747214 2747214 . . . alleles " T G"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; known ; non-synonymous GL192382.1 samtools variation 2747367 2747367 . . . alleles " T C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; non-synonymous GL192382.1 samtools variation 2747649 2747649 . . . alleles " G A"; frequencies " 0.53125 0.46875"; depth 64 ; known ; non-synonymous GL192382.1 samtools variation 2747927 2747927 . . . alleles " G T"; frequencies " 0.3 0.7"; depth 10 ; known ; non-synonymous GL192382.1 samtools variation 2748159 2748159 . . . alleles " C T"; frequencies " 0.607594936708861 0.392405063291139"; depth 79 ; unknown ; non-synonymous GL192382.1 samtools variation 3421296 3421296 . . . alleles " T C"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; known ; synonymous GL192383.1 samtools variation 21665 21665 . . . alleles " T C"; frequencies " 0.489795918367347 0.510204081632653"; depth 49 ; unknown ; synonymous GL192383.1 samtools variation 22345 22345 . . . alleles " T G"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; unknown ; N/A GL192383.1 samtools variation 171737 171737 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192383.1 samtools variation 172541 172541 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192383.1 samtools variation 173146 173146 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192383.1 samtools variation 174326 174326 . . . alleles " C T"; frequencies " 0.754385964912281 0.245614035087719"; depth 57 ; unknown ; N/A GL192383.1 samtools variation 174358 174358 . . . alleles " A G"; frequencies " 0.234375 0.765625"; depth 64 ; unknown ; N/A GL192383.1 samtools variation 175490 175490 . . . alleles " A G"; frequencies " 0.548484848484848 0.451515151515152"; depth 330 ; unknown ; N/A GL192383.1 samtools variation 247543 247543 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192383.1 samtools variation 248193 248193 . . . alleles " T A"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192383.1 samtools variation 248350 248350 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192383.1 samtools variation 325991 325991 . . . alleles " G A"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL192383.1 samtools variation 399937 399937 . . . alleles " T G"; frequencies " 0.775 0.225"; depth 40 ; unknown ; N/A GL192383.1 samtools variation 435392 435392 . . . alleles " T A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192383.1 samtools variation 441984 441984 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192383.1 samtools variation 444914 444914 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192383.1 samtools variation 458204 458204 . . . alleles " T A"; frequencies " 0.557377049180328 0.442622950819672"; depth 122 ; unknown ; N/A GL192383.1 samtools variation 477204 477204 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192383.1 samtools variation 493598 493598 . . . alleles " T A"; frequencies " 0.441176470588235 0.558823529411765"; depth 68 ; unknown ; N/A GL192383.1 samtools variation 497272 497272 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192383.1 samtools variation 499569 499569 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192383.1 samtools variation 500039 500039 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192383.1 samtools variation 500040 500040 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192383.1 samtools variation 501014 501014 . . . alleles " G A"; frequencies " 0.42156862745098 0.57843137254902"; depth 306 ; unknown ; N/A GL192383.1 samtools variation 507319 507319 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192383.1 samtools variation 510418 510418 . . . alleles " A T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192383.1 samtools variation 656484 656484 . . . alleles " C T"; frequencies " 0.591111111111111 0.408888888888889"; depth 225 ; unknown ; N/A GL192383.1 samtools variation 820675 820675 . . . alleles " C T"; frequencies " 0.407407407407407 0.592592592592593"; depth 54 ; unknown ; synonymous GL192383.1 samtools variation 830204 830204 . . . alleles " G A"; frequencies " 0.45 0.55"; depth 100 ; unknown ; non-synonymous GL192383.1 samtools variation 847130 847130 . . . alleles " G A"; frequencies " 0.479452054794521 0.520547945205479"; depth 73 ; unknown ; synonymous GL192383.1 samtools variation 850149 850149 . . . alleles " G A"; frequencies " 0.45 0.55"; depth 60 ; unknown ; N/A GL192383.1 samtools variation 877381 877381 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192383.1 samtools variation 881565 881565 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 80 ; unknown ; N/A GL192383.1 samtools variation 962666 962666 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192383.1 samtools variation 1020999 1020999 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192383.1 samtools variation 1059070 1059070 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192383.1 samtools variation 1064857 1064857 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; synonymous GL192383.1 samtools variation 1223241 1223241 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 247 ; unknown ; synonymous GL192383.1 samtools variation 1252940 1252940 . . . alleles " T G"; frequencies " 0.736842105263158 0.263157894736842"; depth 76 ; unknown ; N/A GL192383.1 samtools variation 1708420 1708420 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192383.1 samtools variation 2066222 2066222 . . . alleles " T C"; frequencies " 0.27027027027027 0.72972972972973"; depth 37 ; unknown ; synonymous GL192383.1 samtools variation 2082178 2082178 . . . alleles " G A"; frequencies " 0.233333333333333 0.766666666666667"; depth 30 ; unknown ; N/A GL192383.1 samtools variation 2083324 2083324 . . . alleles " C G"; frequencies " 0.222222222222222 0.777777777777778"; depth 54 ; unknown ; N/A GL192383.1 samtools variation 2086860 2086860 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL192383.1 samtools variation 3599650 3599650 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192383.1 samtools variation 3602627 3602627 . . . alleles " C T"; frequencies " 0.685761047463175 0.314238952536825"; depth 611 ; unknown ; N/A GL192383.1 samtools variation 3603742 3603742 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 429 ; known ; N/A GL192384.1 samtools variation 835280 835280 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192384.1 samtools variation 843047 843047 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192384.1 samtools variation 847400 847400 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192384.1 samtools variation 865090 865090 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192384.1 samtools variation 868615 868615 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192384.1 samtools variation 869317 869317 . . . alleles " A T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192384.1 samtools variation 881171 881171 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192384.1 samtools variation 882297 882297 . . . alleles " A C"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192384.1 samtools variation 891016 891016 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192384.1 samtools variation 895889 895889 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192384.1 samtools variation 897557 897557 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192384.1 samtools variation 897592 897592 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192384.1 samtools variation 902770 902770 . . . alleles " A G"; frequencies " 0.69672131147541 0.30327868852459"; depth 122 ; unknown ; non-synonymous GL192384.1 samtools variation 983267 983267 . . . alleles " T A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192384.1 samtools variation 983923 983923 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192384.1 samtools variation 991579 991579 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192384.1 samtools variation 1140519 1140519 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192384.1 samtools variation 1170982 1170982 . . . alleles " C T"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL192384.1 samtools variation 1171745 1171745 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192384.1 samtools variation 1176813 1176813 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192384.1 samtools variation 1180650 1180650 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192384.1 samtools variation 1180789 1180789 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192384.1 samtools variation 1181739 1181739 . . . alleles " G A"; frequencies " 0.608695652173913 0.369565217391304"; depth 46 ; unknown ; N/A GL192384.1 samtools variation 1181846 1181846 . . . alleles " T C"; frequencies " 0.407894736842105 0.592105263157895"; depth 152 ; unknown ; N/A GL192384.1 samtools variation 1182027 1182027 . . . alleles " T C"; frequencies " 0.645454545454546 0.354545454545455"; depth 110 ; unknown ; synonymous GL192384.1 samtools variation 1184534 1184534 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192384.1 samtools variation 1185373 1185373 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192384.1 samtools variation 1185614 1185614 . . . alleles " C T"; frequencies " 0.532608695652174 0.467391304347826"; depth 184 ; unknown ; synonymous GL192384.1 samtools variation 1190524 1190524 . . . alleles " T C"; frequencies " 0.542314335060449 0.457685664939551"; depth 579 ; unknown ; synonymous GL192384.1 samtools variation 1190618 1190618 . . . alleles " G A"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192384.1 samtools variation 1191485 1191485 . . . alleles " A C"; frequencies " 0.471428571428571 0.528571428571429"; depth 70 ; unknown ; N/A GL192384.1 samtools variation 1191728 1191728 . . . alleles " A G"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192384.1 samtools variation 1191739 1191739 . . . alleles " C T"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL192384.1 samtools variation 1193368 1193368 . . . alleles " T C"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192384.1 samtools variation 1193690 1193690 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192384.1 samtools variation 1194104 1194104 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL192384.1 samtools variation 1194271 1194271 . . . alleles " T C"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192384.1 samtools variation 1194372 1194372 . . . alleles " A G"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192384.1 samtools variation 1194424 1194424 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192384.1 samtools variation 1194597 1194597 . . . alleles " G C"; frequencies " 0.787037037037037 0.212962962962963"; depth 216 ; unknown ; synonymous GL192384.1 samtools variation 1196657 1196657 . . . alleles " C T"; frequencies " 0.365853658536585 0.634146341463415"; depth 41 ; unknown ; N/A GL192384.1 samtools variation 1199733 1199733 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192384.1 samtools variation 1199752 1199752 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192384.1 samtools variation 1200707 1200707 . . . alleles " G A"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192384.1 samtools variation 1201032 1201032 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 80 ; unknown ; N/A GL192384.1 samtools variation 1201760 1201760 . . . alleles " T A"; frequencies " 0.522727272727273 0.477272727272727"; depth 88 ; unknown ; N/A GL192384.1 samtools variation 1202243 1202243 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 176 ; unknown ; N/A GL192384.1 samtools variation 1203233 1203233 . . . alleles " T G"; frequencies " 0.693548387096774 0.306451612903226"; depth 62 ; unknown ; N/A GL192384.1 samtools variation 1204573 1204573 . . . alleles " A G"; frequencies " 0.597014925373134 0.402985074626866"; depth 402 ; unknown ; synonymous GL192384.1 samtools variation 1205098 1205098 . . . alleles " C T"; frequencies " 0.572533849129594 0.427466150870406"; depth 517 ; unknown ; N/A GL192384.1 samtools variation 1205948 1205948 . . . alleles " T G"; frequencies " 0.631901840490798 0.368098159509202"; depth 652 ; unknown ; N/A GL192384.1 samtools variation 1207877 1207877 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 39 ; unknown ; N/A GL192384.1 samtools variation 1208206 1208206 . . . alleles " G C"; frequencies " 0.547619047619048 0.452380952380952"; depth 42 ; unknown ; N/A GL192384.1 samtools variation 1208688 1208688 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192384.1 samtools variation 1209591 1209591 . . . alleles " C T"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; unknown ; N/A GL192384.1 samtools variation 1210200 1210200 . . . alleles " C A"; frequencies " 0.712121212121212 0.287878787878788"; depth 198 ; unknown ; non-synonymous GL192384.1 samtools variation 1211554 1211554 . . . alleles " G C"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192384.1 samtools variation 1211820 1211820 . . . alleles " T A"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; N/A GL192384.1 samtools variation 1213011 1213011 . . . alleles " G A"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192384.1 samtools variation 1213381 1213381 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 35 ; unknown ; N/A GL192384.1 samtools variation 1215286 1215286 . . . alleles " C G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192384.1 samtools variation 1216961 1216961 . . . alleles " C G"; frequencies " 0.48780487804878 0.51219512195122"; depth 41 ; unknown ; N/A GL192384.1 samtools variation 1223328 1223328 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192384.1 samtools variation 1225393 1225393 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192384.1 samtools variation 1231098 1231098 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192384.1 samtools variation 1234782 1234782 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192384.1 samtools variation 1241288 1241288 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192384.1 samtools variation 1274410 1274410 . . . alleles " C T"; frequencies " 0.75366568914956 0.243401759530792"; depth 341 ; unknown ; N/A GL192384.1 samtools variation 1274420 1274420 . . . alleles " C T"; frequencies " 0.621951219512195 0.378048780487805"; depth 328 ; unknown ; N/A GL192384.1 samtools variation 1274518 1274518 . . . alleles " A G"; frequencies " 0.634831460674157 0.365168539325843"; depth 178 ; unknown ; N/A GL192384.1 samtools variation 1275007 1275007 . . . alleles " G T"; frequencies " 0.548076923076923 0.451923076923077"; depth 104 ; unknown ; N/A GL192384.1 samtools variation 1275010 1275010 . . . alleles " T C"; frequencies " 0.543689320388349 0.456310679611651"; depth 103 ; unknown ; N/A GL192384.1 samtools variation 1275282 1275282 . . . alleles " G A"; frequencies " 0.651006711409396 0.348993288590604"; depth 149 ; unknown ; N/A GL192384.1 samtools variation 1472422 1472422 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192384.1 samtools variation 1504965 1504965 . . . alleles " T C"; frequencies " 0.768595041322314 0.231404958677686"; depth 121 ; unknown ; N/A GL192384.1 samtools variation 1506067 1506067 . . . alleles " T C"; frequencies " 0.794871794871795 0.205128205128205"; depth 78 ; unknown ; non-synonymous GL192384.1 samtools variation 1507864 1507864 . . . alleles " A C"; frequencies " 0.25 0.75"; depth 220 ; unknown ; synonymous GL192384.1 samtools variation 1508622 1508622 . . . alleles " T C"; frequencies " 0.51219512195122 0.48780487804878"; depth 41 ; unknown ; N/A GL192384.1 samtools variation 1508913 1508913 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192384.1 samtools variation 1509511 1509511 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 126 ; unknown ; synonymous GL192384.1 samtools variation 1519894 1519894 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192384.1 samtools variation 1536886 1536886 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; synonymous GL192384.1 samtools variation 1537546 1537546 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; synonymous GL192384.1 samtools variation 1554230 1554230 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192384.1 samtools variation 1554436 1554436 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; N/A GL192384.1 samtools variation 1554540 1554540 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 49 ; unknown ; N/A GL192384.1 samtools variation 1554836 1554836 . . . alleles " G A"; frequencies " 0.574712643678161 0.425287356321839"; depth 87 ; unknown ; N/A GL192384.1 samtools variation 1554861 1554861 . . . alleles " C G"; frequencies " 0.607142857142857 0.392857142857143"; depth 112 ; unknown ; N/A GL192384.1 samtools variation 1554971 1554971 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 110 ; unknown ; N/A GL192384.1 samtools variation 1570269 1570269 . . . alleles " T C"; frequencies " 0.696428571428571 0.303571428571429"; depth 112 ; unknown ; non-synonymous GL192384.1 samtools variation 1618512 1618512 . . . alleles " C G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192384.1 samtools variation 1618530 1618530 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL192384.1 samtools variation 1619275 1619275 . . . alleles " A G"; frequencies " 0.383458646616541 0.609022556390977"; depth 133 ; unknown ; N/A GL192384.1 samtools variation 1619329 1619329 . . . alleles " G T"; frequencies " 0.384180790960452 0.615819209039548"; depth 177 ; unknown ; N/A GL192384.1 samtools variation 1622277 1622277 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192384.1 samtools variation 1625778 1625778 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192384.1 samtools variation 1626972 1626972 . . . alleles " T A"; frequencies " 0.783333333333333 0.216666666666667"; depth 60 ; unknown ; N/A GL192384.1 samtools variation 1627105 1627105 . . . alleles " T C"; frequencies " 0.563829787234043 0.436170212765957"; depth 94 ; unknown ; N/A GL192384.1 samtools variation 1627109 1627109 . . . alleles " G A"; frequencies " 0.793814432989691 0.206185567010309"; depth 97 ; unknown ; N/A GL192384.1 samtools variation 1630699 1630699 . . . alleles " T A"; frequencies " 0.217948717948718 0.782051282051282"; depth 78 ; unknown ; N/A GL192385.1 samtools variation 9578 9578 . . . alleles " C A"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; N/A GL192385.1 samtools variation 11137 11137 . . . alleles " G C"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192385.1 samtools variation 13803 13803 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192385.1 samtools variation 16956 16956 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; N/A GL192385.1 samtools variation 19716 19716 . . . alleles " C T"; frequencies " 0.668508287292818 0.331491712707182"; depth 181 ; unknown ; N/A GL192385.1 samtools variation 20743 20743 . . . alleles " A C"; frequencies " 0.706422018348624 0.293577981651376"; depth 109 ; known ; N/A GL192385.1 samtools variation 23144 23144 . . . alleles " G A"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; known ; N/A GL192385.1 samtools variation 23477 23477 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 90 ; known ; N/A GL192385.1 samtools variation 23620 23620 . . . alleles " G A"; frequencies " 0.542553191489362 0.457446808510638"; depth 94 ; known ; N/A GL192385.1 samtools variation 29259 29259 . . . alleles " A G"; frequencies " 0.36231884057971 0.63768115942029"; depth 69 ; known ; N/A GL192385.1 samtools variation 32591 32591 . . . alleles " C A"; frequencies " 0.285714285714286 0.714285714285714"; depth 42 ; known ; N/A GL192385.1 samtools variation 39244 39244 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 52 ; known ; N/A GL192385.1 samtools variation 41283 41283 . . . alleles " T C"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL192385.1 samtools variation 49465 49465 . . . alleles " C T"; frequencies " 0.787234042553192 0.212765957446809"; depth 47 ; unknown ; N/A GL192385.1 samtools variation 51851 51851 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 35 ; known ; N/A GL192385.1 samtools variation 57479 57479 . . . alleles " G T"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; known ; N/A GL192385.1 samtools variation 59013 59013 . . . alleles " C T"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL192385.1 samtools variation 60845 60845 . . . alleles " C T"; frequencies " 0.354961832061069 0.645038167938931"; depth 262 ; known ; N/A GL192385.1 samtools variation 88088 88088 . . . alleles " T A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192385.1 samtools variation 99756 99756 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192385.1 samtools variation 100254 100254 . . . alleles " G C"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL192385.1 samtools variation 100427 100427 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 46 ; unknown ; N/A GL192385.1 samtools variation 344653 344653 . . . alleles " G A"; frequencies " 0.69 0.31"; depth 200 ; unknown ; non-synonymous GL192385.1 samtools variation 356713 356713 . . . alleles " C T"; frequencies " 0.711864406779661 0.288135593220339"; depth 59 ; known ; N/A GL192385.1 samtools variation 358034 358034 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; N/A GL192385.1 samtools variation 368698 368698 . . . alleles " T C"; frequencies " 0.438356164383562 0.561643835616438"; depth 73 ; unknown ; N/A GL192385.1 samtools variation 378038 378038 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192385.1 samtools variation 378669 378669 . . . alleles " G A"; frequencies " 0.797872340425532 0.202127659574468"; depth 94 ; unknown ; N/A GL192385.1 samtools variation 394831 394831 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192385.1 samtools variation 396292 396292 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 63 ; unknown ; N/A GL192385.1 samtools variation 461524 461524 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; synonymous GL192385.1 samtools variation 482470 482470 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192385.1 samtools variation 491905 491905 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192385.1 samtools variation 502286 502286 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 48 ; known ; synonymous GL192385.1 samtools variation 804009 804009 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL192385.1 samtools variation 823192 823192 . . . alleles " T A"; frequencies " 0.734166666666667 0.265833333333333"; depth 1200 ; unknown ; non-synonymous GL192385.1 samtools variation 834090 834090 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192385.1 samtools variation 861824 861824 . . . alleles " G C"; frequencies " 0.634408602150538 0.365591397849462"; depth 93 ; unknown ; non-synonymous GL192385.1 samtools variation 1278518 1278518 . . . alleles " G C"; frequencies " 0.644067796610169 0.355932203389831"; depth 118 ; unknown ; N/A GL192385.1 samtools variation 1279595 1279595 . . . alleles " C T"; frequencies " 0.744525547445255 0.255474452554745"; depth 137 ; unknown ; N/A GL192385.1 samtools variation 1285634 1285634 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192385.1 samtools variation 1384273 1384273 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192385.1 samtools variation 1384290 1384290 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192385.1 samtools variation 1392468 1392468 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192385.1 samtools variation 1414639 1414639 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192385.1 samtools variation 1422864 1422864 . . . alleles " G A"; frequencies " 0.571969696969697 0.428030303030303"; depth 264 ; unknown ; non-synonymous GL192385.1 samtools variation 1424113 1424113 . . . alleles " A C"; frequencies " 0.456475583864119 0.543524416135881"; depth 471 ; unknown ; N/A GL192385.1 samtools variation 1424723 1424723 . . . alleles " C A"; frequencies " 0.623333333333333 0.376666666666667"; depth 300 ; unknown ; N/A GL192385.1 samtools variation 1425127 1425127 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL192385.1 samtools variation 1445308 1445308 . . . alleles " A C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192385.1 samtools variation 1450179 1450179 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192385.1 samtools variation 2040224 2040224 . . . alleles " A G"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL192385.1 samtools variation 2105271 2105271 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192385.1 samtools variation 2112212 2112212 . . . alleles " G A"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; unknown ; N/A GL192385.1 samtools variation 2112981 2112981 . . . alleles " C A"; frequencies " 0.65979381443299 0.34020618556701"; depth 97 ; unknown ; N/A GL192385.1 samtools variation 2113454 2113454 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 39 ; unknown ; N/A GL192385.1 samtools variation 2118582 2118582 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192385.1 samtools variation 2118702 2118702 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192385.1 samtools variation 2137417 2137417 . . . alleles " C T"; frequencies " 0.66875 0.33125"; depth 160 ; unknown ; non-synonymous GL192385.1 samtools variation 2147196 2147196 . . . alleles " T C"; frequencies " 0.645390070921986 0.354609929078014"; depth 141 ; unknown ; synonymous GL192385.1 samtools variation 2249469 2249469 . . . alleles " T G"; frequencies " 0.282051282051282 0.717948717948718"; depth 39 ; unknown ; N/A GL192385.1 samtools variation 2320845 2320845 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192385.1 samtools variation 2324855 2324855 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192385.1 samtools variation 2326262 2326262 . . . alleles " C G"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL192385.1 samtools variation 2326534 2326534 . . . alleles " C A"; frequencies " 0.683333333333333 0.316666666666667"; depth 60 ; unknown ; N/A GL192385.1 samtools variation 2326811 2326811 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 66 ; unknown ; N/A GL192385.1 samtools variation 2332923 2332923 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192385.1 samtools variation 2335029 2335029 . . . alleles " C T"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; unknown ; N/A GL192385.1 samtools variation 2337824 2337824 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192385.1 samtools variation 2337960 2337960 . . . alleles " A G"; frequencies " 0.375 0.4375"; depth 16 ; unknown ; N/A GL192385.1 samtools variation 2341735 2341735 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 75 ; unknown ; N/A GL192385.1 samtools variation 2710558 2710558 . . . alleles " C T"; frequencies " 0.759036144578313 0.240963855421687"; depth 83 ; unknown ; synonymous GL192385.1 samtools variation 2718015 2718015 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192385.1 samtools variation 2723665 2723665 . . . alleles " A G"; frequencies " 0.757575757575758 0.227272727272727"; depth 66 ; unknown ; synonymous GL192385.1 samtools variation 2724933 2724933 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192385.1 samtools variation 2729985 2729985 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 51 ; unknown ; N/A GL192385.1 samtools variation 2730081 2730081 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL192385.1 samtools variation 2837525 2837525 . . . alleles " A G"; frequencies " 0.345454545454545 0.654545454545455"; depth 55 ; unknown ; N/A GL192385.1 samtools variation 2848759 2848759 . . . alleles " T C"; frequencies " 0.761394101876676 0.238605898123324"; depth 1865 ; unknown ; N/A GL192385.1 samtools variation 2849311 2849311 . . . alleles " G T"; frequencies " 0.755500464828014 0.244189649829563"; depth 3227 ; unknown ; N/A GL192385.1 samtools variation 3417960 3417960 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192385.1 samtools variation 3418564 3418564 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192385.1 samtools variation 3418899 3418899 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192385.1 samtools variation 3422238 3422238 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192385.1 samtools variation 3423851 3423851 . . . alleles " C A"; frequencies " 0.252941176470588 0.747058823529412"; depth 170 ; unknown ; N/A GL192385.1 samtools variation 3429593 3429593 . . . alleles " G A"; frequencies " 0.795918367346939 0.204081632653061"; depth 98 ; unknown ; N/A GL192385.1 samtools variation 3430836 3430836 . . . alleles " T C"; frequencies " 0.722972972972973 0.277027027027027"; depth 148 ; known ; N/A GL192385.1 samtools variation 3430887 3430887 . . . alleles " C T"; frequencies " 0.719745222929936 0.280254777070064"; depth 157 ; known ; N/A GL192385.1 samtools variation 3460879 3460879 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192386.1 samtools variation 196345 196345 . . . alleles " T C"; frequencies " 0.796610169491525 0.203389830508475"; depth 59 ; unknown ; N/A GL192386.1 samtools variation 325166 325166 . . . alleles " G T"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192386.1 samtools variation 329048 329048 . . . alleles " A G"; frequencies " 0.329545454545455 0.670454545454545"; depth 88 ; known ; N/A GL192386.1 samtools variation 330714 330714 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; known ; N/A GL192386.1 samtools variation 343977 343977 . . . alleles " T C"; frequencies " 0.472727272727273 0.527272727272727"; depth 55 ; known ; N/A GL192386.1 samtools variation 346902 346902 . . . alleles " A G"; frequencies " 0.610294117647059 0.389705882352941"; depth 272 ; known ; N/A GL192386.1 samtools variation 353908 353908 . . . alleles " A G"; frequencies " 0.579185520361991 0.420814479638009"; depth 221 ; known ; N/A GL192386.1 samtools variation 354844 354844 . . . alleles " T C"; frequencies " 0.71563981042654 0.28436018957346"; depth 211 ; unknown ; N/A GL192386.1 samtools variation 358318 358318 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 135 ; unknown ; synonymous GL192386.1 samtools variation 456728 456728 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192386.1 samtools variation 456835 456835 . . . alleles " G T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL192386.1 samtools variation 589206 589206 . . . alleles " T G"; frequencies " 0.504950495049505 0.495049504950495"; depth 101 ; known ; N/A GL192386.1 samtools variation 589490 589490 . . . alleles " G A"; frequencies " 0.781609195402299 0.218390804597701"; depth 87 ; unknown ; N/A GL192386.1 samtools variation 680930 680930 . . . alleles " A C"; frequencies " 0.57985257985258 0.42014742014742"; depth 407 ; known ; N/A GL192386.1 samtools variation 681041 681041 . . . alleles " G A"; frequencies " 0.47926267281106 0.52073732718894"; depth 434 ; unknown ; N/A GL192386.1 samtools variation 683502 683502 . . . alleles " C T"; frequencies " 0.774774774774775 0.225225225225225"; depth 111 ; unknown ; N/A GL192386.1 samtools variation 683874 683874 . . . alleles " C T"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL192386.1 samtools variation 684495 684495 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; N/A GL192386.1 samtools variation 684523 684523 . . . alleles " C T"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL192386.1 samtools variation 684882 684882 . . . alleles " G A"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL192386.1 samtools variation 685522 685522 . . . alleles " G A"; frequencies " 0.655021834061135 0.344978165938865"; depth 229 ; unknown ; N/A GL192386.1 samtools variation 685945 685945 . . . alleles " T C"; frequencies " 0.722826086956522 0.277173913043478"; depth 184 ; unknown ; N/A GL192386.1 samtools variation 686548 686548 . . . alleles " A G"; frequencies " 0.595238095238095 0.404761904761905"; depth 42 ; unknown ; N/A GL192386.1 samtools variation 686717 686717 . . . alleles " T G"; frequencies " 0.62962962962963 0.37037037037037"; depth 54 ; unknown ; N/A GL192386.1 samtools variation 686808 686808 . . . alleles " G T"; frequencies " 0.650793650793651 0.349206349206349"; depth 63 ; unknown ; N/A GL192386.1 samtools variation 706973 706973 . . . alleles " A C"; frequencies " 0.469230769230769 0.530769230769231"; depth 130 ; unknown ; N/A GL192386.1 samtools variation 707085 707085 . . . alleles " A G"; frequencies " 0.390205371248025 0.609794628751975"; depth 633 ; known ; N/A GL192386.1 samtools variation 707310 707310 . . . alleles " C G"; frequencies " 0.400568181818182 0.599431818181818"; depth 352 ; unknown ; N/A GL192386.1 samtools variation 707314 707314 . . . alleles " A G"; frequencies " 0.391812865497076 0.608187134502924"; depth 342 ; unknown ; N/A GL192386.1 samtools variation 708987 708987 . . . alleles " T G"; frequencies " 0.576399394856278 0.422087745839637"; depth 661 ; unknown ; N/A GL192386.1 samtools variation 711950 711950 . . . alleles " G T"; frequencies " 0.348837209302326 0.651162790697674"; depth 43 ; unknown ; N/A GL192386.1 samtools variation 712206 712206 . . . alleles " A C"; frequencies " 0.454545454545455 0.545454545454545"; depth 44 ; unknown ; N/A GL192386.1 samtools variation 716276 716276 . . . alleles " A G"; frequencies " 0.659574468085106 0.340425531914894"; depth 47 ; known ; N/A GL192386.1 samtools variation 716770 716770 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; unknown ; N/A GL192386.1 samtools variation 717255 717255 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; N/A GL192386.1 samtools variation 717618 717618 . . . alleles " T C"; frequencies " 0.494252873563218 0.505747126436782"; depth 87 ; unknown ; N/A GL192386.1 samtools variation 720007 720007 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 64 ; unknown ; N/A GL192386.1 samtools variation 721486 721486 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192386.1 samtools variation 722535 722535 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL192386.1 samtools variation 724285 724285 . . . alleles " A G"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL192386.1 samtools variation 724376 724376 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192386.1 samtools variation 730841 730841 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192386.1 samtools variation 749575 749575 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192386.1 samtools variation 751603 751603 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192386.1 samtools variation 752662 752662 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192386.1 samtools variation 771263 771263 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192386.1 samtools variation 772187 772187 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192386.1 samtools variation 775692 775692 . . . alleles " C A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192386.1 samtools variation 965648 965648 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192386.1 samtools variation 968187 968187 . . . alleles " T A"; frequencies " 0.340909090909091 0.659090909090909"; depth 44 ; unknown ; N/A GL192386.1 samtools variation 968581 968581 . . . alleles " G T"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; known ; N/A GL192386.1 samtools variation 970345 970345 . . . alleles " A G"; frequencies " 0.323529411764706 0.676470588235294"; depth 34 ; unknown ; N/A GL192386.1 samtools variation 970539 970539 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL192386.1 samtools variation 970614 970614 . . . alleles " C T"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL192386.1 samtools variation 973680 973680 . . . alleles " G A"; frequencies " 0.798941798941799 0.201058201058201"; depth 189 ; unknown ; N/A GL192386.1 samtools variation 1031126 1031126 . . . alleles " G C"; frequencies " 0.43859649122807 0.56140350877193"; depth 114 ; unknown ; N/A GL192386.1 samtools variation 1190426 1190426 . . . alleles " G T"; frequencies " 0.308139534883721 0.691860465116279"; depth 172 ; known ; N/A GL192386.1 samtools variation 1192971 1192971 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192386.1 samtools variation 1306379 1306379 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL192386.1 samtools variation 1342255 1342255 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 51 ; known ; N/A GL192386.1 samtools variation 1343368 1343368 . . . alleles " G C"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; known ; N/A GL192386.1 samtools variation 1350633 1350633 . . . alleles " C A"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192386.1 samtools variation 1432156 1432156 . . . alleles " A C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL192386.1 samtools variation 1433284 1433284 . . . alleles " C G"; frequencies " 0.353139013452915 0.645739910313901"; depth 892 ; known ; N/A GL192386.1 samtools variation 1456111 1456111 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192386.1 samtools variation 1458791 1458791 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192386.1 samtools variation 1637731 1637731 . . . alleles " G A"; frequencies " 0.287671232876712 0.712328767123288"; depth 73 ; known ; N/A GL192386.1 samtools variation 1637880 1637880 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 105 ; known ; N/A GL192386.1 samtools variation 1651015 1651015 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192386.1 samtools variation 1652462 1652462 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192386.1 samtools variation 1653510 1653510 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 40 ; known ; N/A GL192386.1 samtools variation 1792680 1792680 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192386.1 samtools variation 1792842 1792842 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192386.1 samtools variation 1793109 1793109 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL192386.1 samtools variation 1793554 1793554 . . . alleles " C G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192386.1 samtools variation 1794520 1794520 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL192386.1 samtools variation 1794682 1794682 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192386.1 samtools variation 1904948 1904948 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL192386.1 samtools variation 1905034 1905034 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192386.1 samtools variation 2034323 2034323 . . . alleles " T G"; frequencies " 0.558922558922559 0.441077441077441"; depth 297 ; known ; N/A GL192386.1 samtools variation 2034353 2034353 . . . alleles " T C"; frequencies " 0.718832891246684 0.281167108753316"; depth 377 ; unknown ; N/A GL192386.1 samtools variation 2295055 2295055 . . . alleles " C T"; frequencies " 0.582089552238806 0.417910447761194"; depth 67 ; known ; N/A GL192386.1 samtools variation 2295574 2295574 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192386.1 samtools variation 2297108 2297108 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192386.1 samtools variation 2299583 2299583 . . . alleles " A G"; frequencies " 0.763440860215054 0.236559139784946"; depth 93 ; known ; N/A GL192386.1 samtools variation 2299959 2299959 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 65 ; unknown ; N/A GL192386.1 samtools variation 2320507 2320507 . . . alleles " T C"; frequencies " 0.469594594594595 0.530405405405405"; depth 296 ; unknown ; N/A GL192386.1 samtools variation 2728714 2728714 . . . alleles " G A"; frequencies " 0.358974358974359 0.641025641025641"; depth 39 ; known ; N/A GL192386.1 samtools variation 2737230 2737230 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192386.1 samtools variation 2737877 2737877 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192386.1 samtools variation 2738549 2738549 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192386.1 samtools variation 2738591 2738591 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192386.1 samtools variation 2738842 2738842 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192386.1 samtools variation 2739063 2739063 . . . alleles " A G"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; N/A GL192386.1 samtools variation 2739743 2739743 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192386.1 samtools variation 2739784 2739784 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192386.1 samtools variation 2740125 2740125 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192386.1 samtools variation 2740436 2740436 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192386.1 samtools variation 2741134 2741134 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL192386.1 samtools variation 2741776 2741776 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL192386.1 samtools variation 2742366 2742366 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192386.1 samtools variation 2743110 2743110 . . . alleles " A G"; frequencies " 0.364864864864865 0.635135135135135"; depth 74 ; known ; N/A GL192386.1 samtools variation 2743179 2743179 . . . alleles " A G"; frequencies " 0.370786516853933 0.629213483146067"; depth 89 ; known ; N/A GL192386.1 samtools variation 2743322 2743322 . . . alleles " T A"; frequencies " 0.566137566137566 0.433862433862434"; depth 189 ; known ; N/A GL192386.1 samtools variation 2743556 2743556 . . . alleles " G A"; frequencies " 0.584269662921348 0.415730337078652"; depth 89 ; known ; N/A GL192386.1 samtools variation 2802216 2802216 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; known ; N/A GL192386.1 samtools variation 2836123 2836123 . . . alleles " A G"; frequencies " 0.218181818181818 0.781818181818182"; depth 55 ; known ; synonymous GL192386.1 samtools variation 2899455 2899455 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 40 ; known ; N/A GL192386.1 samtools variation 2900627 2900627 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192386.1 samtools variation 2902951 2902951 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192386.1 samtools variation 3141449 3141449 . . . alleles " G A"; frequencies " 0.683544303797468 0.316455696202532"; depth 79 ; unknown ; N/A GL192386.1 samtools variation 3143526 3143526 . . . alleles " G A"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; N/A GL192386.1 samtools variation 3150891 3150891 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192386.1 samtools variation 3151958 3151958 . . . alleles " A T"; frequencies " 0.358974358974359 0.641025641025641"; depth 195 ; known ; N/A GL192386.1 samtools variation 3191112 3191112 . . . alleles " A C"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192386.1 samtools variation 3196228 3196228 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 30 ; unknown ; synonymous GL192386.1 samtools variation 3201653 3201653 . . . alleles " G A"; frequencies " 0.781818181818182 0.218181818181818"; depth 110 ; unknown ; synonymous GL192386.1 samtools variation 3316530 3316530 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 60 ; known ; synonymous GL192386.1 samtools variation 3338899 3338899 . . . alleles " G A"; frequencies " 0.528476821192053 0.471523178807947"; depth 755 ; known ; N/A GL192386.1 samtools variation 3346264 3346264 . . . alleles " A C"; frequencies " 0.504273504273504 0.495726495726496"; depth 117 ; unknown ; N/A GL192386.1 samtools variation 3363532 3363532 . . . alleles " A G"; frequencies " 0.560693641618497 0.427745664739884"; depth 173 ; unknown ; non-synonymous GL192386.1 samtools variation 3366922 3366922 . . . alleles " T C"; frequencies " 0.796875 0.203125"; depth 64 ; unknown ; N/A GL192386.1 samtools variation 3377108 3377108 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL192386.1 samtools variation 3380479 3380479 . . . alleles " A G"; frequencies " 0.527027027027027 0.472972972972973"; depth 74 ; known ; N/A GL192386.1 samtools variation 3380907 3380907 . . . alleles " G A"; frequencies " 0.44311377245509 0.55688622754491"; depth 167 ; known ; N/A GL192386.1 samtools variation 3381241 3381241 . . . alleles " G A"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; known ; N/A GL192386.1 samtools variation 3382103 3382103 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192386.1 samtools variation 3448942 3448942 . . . alleles " T C"; frequencies " 0.518272425249169 0.481727574750831"; depth 301 ; known ; non-synonymous GL192386.1 samtools variation 3450722 3450722 . . . alleles " A G"; frequencies " 0.668421052631579 0.331578947368421"; depth 190 ; known ; N/A GL192386.1 samtools variation 3453606 3453606 . . . alleles " C T"; frequencies " 0.393162393162393 0.606837606837607"; depth 117 ; known ; N/A GL192386.1 samtools variation 3454514 3454514 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 54 ; unknown ; synonymous GL192386.1 samtools variation 3455462 3455462 . . . alleles " T C"; frequencies " 0.413793103448276 0.586206896551724"; depth 377 ; known ; synonymous GL192386.1 samtools variation 3455727 3455727 . . . alleles " T C"; frequencies " 0.37125748502994 0.62874251497006"; depth 501 ; known ; non-synonymous GL192386.1 samtools variation 3455794 3455794 . . . alleles " A G"; frequencies " 0.510416666666667 0.489583333333333"; depth 96 ; unknown ; N/A GL192386.1 samtools variation 3456260 3456260 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 30 ; known ; N/A GL192386.1 samtools variation 3456442 3456442 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 153 ; known ; N/A GL192386.1 samtools variation 3456668 3456668 . . . alleles " G C"; frequencies " 0.688581314878893 0.311418685121107"; depth 289 ; known ; synonymous GL192386.1 samtools variation 3457576 3457576 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192386.1 samtools variation 3457806 3457806 . . . alleles " C G"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; known ; N/A GL192386.1 samtools variation 3458379 3458379 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL192386.1 samtools variation 3460341 3460341 . . . alleles " T A"; frequencies " 0.529411764705882 0.470588235294118"; depth 51 ; known ; N/A GL192386.1 samtools variation 3463427 3463427 . . . alleles " C T"; frequencies " 0.344370860927152 0.655629139072848"; depth 755 ; known ; non-synonymous GL192386.1 samtools variation 3464884 3464884 . . . alleles " A T"; frequencies " 0.496350364963504 0.503649635036496"; depth 137 ; known ; N/A GL192386.1 samtools variation 3465324 3465324 . . . alleles " G A"; frequencies " 0.737704918032787 0.262295081967213"; depth 61 ; known ; N/A GL192386.1 samtools variation 3470371 3470371 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192386.1 samtools variation 3470997 3470997 . . . alleles " A G"; frequencies " 0.792682926829268 0.207317073170732"; depth 82 ; unknown ; non-synonymous GL192386.1 samtools variation 3493627 3493627 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192386.1 samtools variation 3494623 3494623 . . . alleles " T C"; frequencies " 0.759615384615385 0.240384615384615"; depth 104 ; unknown ; synonymous GL192386.1 samtools variation 3537693 3537693 . . . alleles " C G"; frequencies " 0.750816104461371 0.249183895538629"; depth 919 ; unknown ; synonymous GL192386.1 samtools variation 3537951 3537951 . . . alleles " C T"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; N/A GL192386.1 samtools variation 3537990 3537990 . . . alleles " T A"; frequencies " 0.478260869565217 0.521739130434783"; depth 46 ; unknown ; N/A GL192386.1 samtools variation 3538027 3538027 . . . alleles " A C"; frequencies " 0.456140350877193 0.543859649122807"; depth 57 ; unknown ; N/A GL192386.1 samtools variation 3538903 3538903 . . . alleles " A G"; frequencies " 0.325 0.675"; depth 40 ; unknown ; N/A GL192386.1 samtools variation 3543449 3543449 . . . alleles " C G"; frequencies " 0.563636363636364 0.436363636363636"; depth 55 ; known ; N/A GL192387.1 samtools variation 271819 271819 . . . alleles " C T"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192387.1 samtools variation 534148 534148 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192387.1 samtools variation 620554 620554 . . . alleles " G A"; frequencies " 0.546875 0.453125"; depth 64 ; known ; N/A GL192387.1 samtools variation 623836 623836 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192387.1 samtools variation 1403837 1403837 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192387.1 samtools variation 1466519 1466519 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; non-synonymous GL192387.1 samtools variation 2246062 2246062 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 65 ; known ; N/A GL192387.1 samtools variation 2246595 2246595 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; known ; N/A GL192387.1 samtools variation 2246925 2246925 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL192387.1 samtools variation 2247458 2247458 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; unknown ; N/A GL192387.1 samtools variation 2249253 2249253 . . . alleles " C A"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; unknown ; N/A GL192387.1 samtools variation 2250341 2250341 . . . alleles " G A"; frequencies " 0.292307692307692 0.707692307692308"; depth 65 ; unknown ; N/A GL192387.1 samtools variation 2251629 2251629 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192387.1 samtools variation 2252421 2252421 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192387.1 samtools variation 2630012 2630012 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192388.1 samtools variation 956339 956339 . . . alleles " T C"; frequencies " 0.582191780821918 0.417808219178082"; depth 146 ; known ; N/A GL192388.1 samtools variation 957331 957331 . . . alleles " G A"; frequencies " 0.688524590163934 0.311475409836066"; depth 122 ; known ; synonymous GL192388.1 samtools variation 958265 958265 . . . alleles " T G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192388.1 samtools variation 958395 958395 . . . alleles " C T"; frequencies " 0.425 0.575"; depth 40 ; known ; N/A GL192388.1 samtools variation 958533 958533 . . . alleles " G A"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; unknown ; N/A GL192388.1 samtools variation 971468 971468 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192388.1 samtools variation 973229 973229 . . . alleles " T G"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; known ; N/A GL192388.1 samtools variation 973735 973735 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192388.1 samtools variation 976108 976108 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL192388.1 samtools variation 994244 994244 . . . alleles " A G"; frequencies " 0.329032258064516 0.670967741935484"; depth 155 ; known ; synonymous GL192388.1 samtools variation 1005839 1005839 . . . alleles " G C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192388.1 samtools variation 1093622 1093622 . . . alleles " C A"; frequencies " 0.712328767123288 0.287671232876712"; depth 73 ; unknown ; N/A GL192388.1 samtools variation 1179361 1179361 . . . alleles " T A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192388.1 samtools variation 1209981 1209981 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192388.1 samtools variation 1217661 1217661 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192388.1 samtools variation 1341520 1341520 . . . alleles " G A"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; unknown ; non-synonymous GL192388.1 samtools variation 1341855 1341855 . . . alleles " C T"; frequencies " 0.570175438596491 0.429824561403509"; depth 114 ; known ; synonymous GL192388.1 samtools variation 1384193 1384193 . . . alleles " A T"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; N/A GL192388.1 samtools variation 1384267 1384267 . . . alleles " A G"; frequencies " 0.78125 0.21875"; depth 64 ; known ; N/A GL192388.1 samtools variation 1384297 1384297 . . . alleles " C T"; frequencies " 0.771929824561403 0.228070175438596"; depth 57 ; known ; N/A GL192388.1 samtools variation 1519295 1519295 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; synonymous GL192388.1 samtools variation 1520211 1520211 . . . alleles " A T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192388.1 samtools variation 1520404 1520404 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192388.1 samtools variation 1527351 1527351 . . . alleles " C T"; frequencies " 0.594936708860759 0.405063291139241"; depth 79 ; unknown ; N/A GL192388.1 samtools variation 1527832 1527832 . . . alleles " T C"; frequencies " 0.59375 0.40625"; depth 64 ; unknown ; N/A GL192388.1 samtools variation 1527975 1527975 . . . alleles " A G"; frequencies " 0.653846153846154 0.346153846153846"; depth 52 ; unknown ; N/A GL192388.1 samtools variation 1527994 1527994 . . . alleles " T G"; frequencies " 0.697674418604651 0.302325581395349"; depth 43 ; unknown ; N/A GL192388.1 samtools variation 1538027 1538027 . . . alleles " C T"; frequencies " 0.427745664739884 0.572254335260116"; depth 173 ; unknown ; synonymous GL192388.1 samtools variation 1550625 1550625 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 55 ; unknown ; synonymous GL192388.1 samtools variation 1556352 1556352 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 75 ; unknown ; synonymous GL192388.1 samtools variation 1556388 1556388 . . . alleles " T C"; frequencies " 0.471698113207547 0.528301886792453"; depth 53 ; unknown ; synonymous GL192388.1 samtools variation 1561138 1561138 . . . alleles " A G"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL192388.1 samtools variation 1609645 1609645 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192388.1 samtools variation 1612710 1612710 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192388.1 samtools variation 1620060 1620060 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192388.1 samtools variation 1640613 1640613 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192388.1 samtools variation 1641416 1641416 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 55 ; unknown ; N/A GL192388.1 samtools variation 1657439 1657439 . . . alleles " G A"; frequencies " 0.642857142857143 0.285714285714286"; depth 14 ; unknown ; N/A GL192388.1 samtools variation 1679064 1679064 . . . alleles " T C"; frequencies " 0.688888888888889 0.311111111111111"; depth 45 ; unknown ; N/A GL192388.1 samtools variation 1685804 1685804 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL192388.1 samtools variation 1689716 1689716 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192388.1 samtools variation 1775644 1775644 . . . alleles " G C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192388.1 samtools variation 1776335 1776335 . . . alleles " T C"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL192388.1 samtools variation 1776956 1776956 . . . alleles " C T"; frequencies " 0.584615384615385 0.415384615384615"; depth 65 ; unknown ; N/A GL192388.1 samtools variation 1777486 1777486 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192388.1 samtools variation 1777780 1777780 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL192388.1 samtools variation 1782199 1782199 . . . alleles " C T"; frequencies " 0.378048780487805 0.621951219512195"; depth 82 ; unknown ; N/A GL192388.1 samtools variation 1784213 1784213 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 40 ; unknown ; N/A GL192388.1 samtools variation 1784763 1784763 . . . alleles " A G"; frequencies " 0.78125 0.21875"; depth 64 ; unknown ; N/A GL192388.1 samtools variation 1784860 1784860 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 56 ; known ; N/A GL192388.1 samtools variation 1784898 1784898 . . . alleles " T C"; frequencies " 0.537313432835821 0.462686567164179"; depth 67 ; known ; N/A GL192388.1 samtools variation 1785087 1785087 . . . alleles " C T"; frequencies " 0.490909090909091 0.509090909090909"; depth 55 ; unknown ; N/A GL192388.1 samtools variation 1785219 1785219 . . . alleles " A G"; frequencies " 0.455555555555556 0.544444444444444"; depth 90 ; unknown ; N/A GL192388.1 samtools variation 1785529 1785529 . . . alleles " C T"; frequencies " 0.637096774193548 0.362903225806452"; depth 124 ; unknown ; N/A GL192388.1 samtools variation 1785606 1785606 . . . alleles " A C"; frequencies " 0.470588235294118 0.529411764705882"; depth 85 ; unknown ; N/A GL192388.1 samtools variation 1785749 1785749 . . . alleles " G A"; frequencies " 0.716216216216216 0.283783783783784"; depth 74 ; unknown ; N/A GL192388.1 samtools variation 1786476 1786476 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192388.1 samtools variation 1786506 1786506 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192388.1 samtools variation 1787129 1787129 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192388.1 samtools variation 1788057 1788057 . . . alleles " C T"; frequencies " 0.581818181818182 0.418181818181818"; depth 55 ; unknown ; N/A GL192388.1 samtools variation 1793587 1793587 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192388.1 samtools variation 1793822 1793822 . . . alleles " T G"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192388.1 samtools variation 1793917 1793917 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192388.1 samtools variation 1794194 1794194 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; N/A GL192388.1 samtools variation 1794310 1794310 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL192388.1 samtools variation 1795072 1795072 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL192388.1 samtools variation 1797885 1797885 . . . alleles " G C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192388.1 samtools variation 1797886 1797886 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192388.1 samtools variation 1798213 1798213 . . . alleles " T C"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; unknown ; N/A GL192388.1 samtools variation 1800007 1800007 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192388.1 samtools variation 1800487 1800487 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192388.1 samtools variation 1801432 1801432 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192388.1 samtools variation 1801433 1801433 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192388.1 samtools variation 1802770 1802770 . . . alleles " T C"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL192388.1 samtools variation 1802874 1802874 . . . alleles " A T"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192388.1 samtools variation 1804047 1804047 . . . alleles " T A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192388.1 samtools variation 1804133 1804133 . . . alleles " C A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192388.1 samtools variation 1807580 1807580 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 40 ; unknown ; N/A GL192388.1 samtools variation 1809151 1809151 . . . alleles " T G"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; unknown ; N/A GL192388.1 samtools variation 1809284 1809284 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192388.1 samtools variation 1809400 1809400 . . . alleles " A G"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; N/A GL192388.1 samtools variation 1810854 1810854 . . . alleles " C T"; frequencies " 0.584070796460177 0.415929203539823"; depth 113 ; unknown ; N/A GL192388.1 samtools variation 1815669 1815669 . . . alleles " A C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192388.1 samtools variation 1815762 1815762 . . . alleles " G C"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192388.1 samtools variation 1822308 1822308 . . . alleles " G C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192388.1 samtools variation 1948417 1948417 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL192388.1 samtools variation 1976953 1976953 . . . alleles " A G"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; known ; non-synonymous GL192388.1 samtools variation 2057162 2057162 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192388.1 samtools variation 2057387 2057387 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192388.1 samtools variation 2558352 2558352 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192388.1 samtools variation 2633578 2633578 . . . alleles " A T"; frequencies " 0.733333333333333 0.266666666666667"; depth 60 ; unknown ; N/A GL192388.1 samtools variation 2635478 2635478 . . . alleles " G A"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; N/A GL192388.1 samtools variation 2636019 2636019 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192388.1 samtools variation 2637153 2637153 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 64 ; unknown ; N/A GL192388.1 samtools variation 2637623 2637623 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; unknown ; N/A GL192388.1 samtools variation 2643955 2643955 . . . alleles " A T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192388.1 samtools variation 2648953 2648953 . . . alleles " G C"; frequencies " 0.761658031088083 0.233160621761658"; depth 193 ; unknown ; N/A GL192388.1 samtools variation 2836469 2836469 . . . alleles " T C"; frequencies " 0.246666666666667 0.753333333333333"; depth 300 ; known ; N/A GL192388.1 samtools variation 2840436 2840436 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192388.1 samtools variation 2842298 2842298 . . . alleles " C A"; frequencies " 0.737967914438503 0.25668449197861"; depth 187 ; unknown ; synonymous GL192388.1 samtools variation 2858647 2858647 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192388.1 samtools variation 2858749 2858749 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192388.1 samtools variation 2870741 2870741 . . . alleles " A G"; frequencies " 0.784810126582278 0.215189873417722"; depth 79 ; unknown ; N/A GL192388.1 samtools variation 2873801 2873801 . . . alleles " G A"; frequencies " 0.73469387755102 0.26530612244898"; depth 98 ; unknown ; N/A GL192388.1 samtools variation 2873890 2873890 . . . alleles " A G"; frequencies " 0.782608695652174 0.202898550724638"; depth 69 ; unknown ; N/A GL192388.1 samtools variation 2932612 2932612 . . . alleles " T A"; frequencies " 0.541666666666667 0.458333333333333"; depth 144 ; unknown ; N/A GL192388.1 samtools variation 2932854 2932854 . . . alleles " A G"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; known ; N/A GL192388.1 samtools variation 2936997 2936997 . . . alleles " A G"; frequencies " 0.324232081911263 0.675767918088737"; depth 293 ; unknown ; non-synonymous GL192388.1 samtools variation 2938362 2938362 . . . alleles " A C"; frequencies " 0.640449438202247 0.359550561797753"; depth 178 ; known ; N/A GL192388.1 samtools variation 2943334 2943334 . . . alleles " G T"; frequencies " 0.794871794871795 0.205128205128205"; depth 78 ; known ; N/A GL192388.1 samtools variation 2944266 2944266 . . . alleles " G A"; frequencies " 0.564102564102564 0.435897435897436"; depth 39 ; known ; N/A GL192388.1 samtools variation 2960245 2960245 . . . alleles " C T"; frequencies " 0.791208791208791 0.208791208791209"; depth 182 ; unknown ; N/A GL192388.1 samtools variation 2960249 2960249 . . . alleles " T G"; frequencies " 0.687861271676301 0.312138728323699"; depth 173 ; unknown ; N/A GL192388.1 samtools variation 2960337 2960337 . . . alleles " T C"; frequencies " 0.774011299435028 0.225988700564972"; depth 177 ; unknown ; N/A GL192388.1 samtools variation 2971403 2971403 . . . alleles " G A"; frequencies " 0.764920828258222 0.235079171741778"; depth 821 ; known ; N/A GL192388.1 samtools variation 2973740 2973740 . . . alleles " A C"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; known ; N/A GL192388.1 samtools variation 2975067 2975067 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL192388.1 samtools variation 2981784 2981784 . . . alleles " G A"; frequencies " 0.775510204081633 0.224489795918367"; depth 98 ; unknown ; N/A GL192388.1 samtools variation 2984357 2984357 . . . alleles " T C"; frequencies " 0.584245076586433 0.415754923413567"; depth 457 ; unknown ; non-synonymous GL192388.1 samtools variation 3004684 3004684 . . . alleles " G A"; frequencies " 0.559440559440559 0.440559440559441"; depth 143 ; unknown ; non-synonymous GL192388.1 samtools variation 3042651 3042651 . . . alleles " A C"; frequencies " 0.285714285714286 0.714285714285714"; depth 133 ; known ; N/A GL192388.1 samtools variation 3090285 3090285 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192388.1 samtools variation 3090662 3090662 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL192388.1 samtools variation 3112471 3112471 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192388.1 samtools variation 3126684 3126684 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192388.1 samtools variation 3230876 3230876 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192388.1 samtools variation 3264268 3264268 . . . alleles " G C"; frequencies " 0.673076923076923 0.326923076923077"; depth 52 ; unknown ; non-synonymous GL192388.1 samtools variation 3276563 3276563 . . . alleles " A T"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192388.1 samtools variation 3280550 3280550 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192388.1 samtools variation 3282055 3282055 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192388.1 samtools variation 3309865 3309865 . . . alleles " G C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192388.1 samtools variation 3313798 3313798 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192388.1 samtools variation 3313812 3313812 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192388.1 samtools variation 3313893 3313893 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192388.1 samtools variation 3314164 3314164 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192388.1 samtools variation 3316409 3316409 . . . alleles " G T"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192388.1 samtools variation 3316826 3316826 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192389.1 samtools variation 100467 100467 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL192389.1 samtools variation 101173 101173 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 44 ; unknown ; N/A GL192389.1 samtools variation 101218 101218 . . . alleles " C T"; frequencies " 0.563636363636364 0.436363636363636"; depth 55 ; unknown ; synonymous GL192389.1 samtools variation 533235 533235 . . . alleles " G A"; frequencies " 0.283950617283951 0.716049382716049"; depth 81 ; unknown ; N/A GL192389.1 samtools variation 533550 533550 . . . alleles " G A"; frequencies " 0.339805825242718 0.660194174757282"; depth 103 ; unknown ; N/A GL192389.1 samtools variation 533578 533578 . . . alleles " T C"; frequencies " 0.343137254901961 0.656862745098039"; depth 102 ; unknown ; N/A GL192389.1 samtools variation 810850 810850 . . . alleles " G A"; frequencies " 0.725393700787402 0.274606299212598"; depth 1016 ; unknown ; N/A GL192389.1 samtools variation 811008 811008 . . . alleles " T C"; frequencies " 0.732203389830508 0.267796610169492"; depth 295 ; unknown ; N/A GL192389.1 samtools variation 811038 811038 . . . alleles " C T"; frequencies " 0.763392857142857 0.236607142857143"; depth 224 ; unknown ; N/A GL192389.1 samtools variation 811609 811609 . . . alleles " G A"; frequencies " 0.79179810725552 0.20820189274448"; depth 951 ; unknown ; synonymous GL192389.1 samtools variation 813679 813679 . . . alleles " T C"; frequencies " 0.558510638297872 0.441489361702128"; depth 188 ; unknown ; N/A GL192389.1 samtools variation 831493 831493 . . . alleles " T C"; frequencies " 0.673469387755102 0.326530612244898"; depth 49 ; unknown ; N/A GL192389.1 samtools variation 838264 838264 . . . alleles " T A"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL192389.1 samtools variation 839521 839521 . . . alleles " T C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192389.1 samtools variation 839531 839531 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192389.1 samtools variation 842157 842157 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192389.1 samtools variation 896897 896897 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192389.1 samtools variation 898002 898002 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; N/A GL192389.1 samtools variation 898971 898971 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192389.1 samtools variation 899125 899125 . . . alleles " T C"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192389.1 samtools variation 899164 899164 . . . alleles " T A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192389.1 samtools variation 899257 899257 . . . alleles " C T"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL192389.1 samtools variation 900893 900893 . . . alleles " A C"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; unknown ; N/A GL192389.1 samtools variation 901172 901172 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192389.1 samtools variation 918430 918430 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192389.1 samtools variation 919137 919137 . . . alleles " A C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192389.1 samtools variation 924489 924489 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 30 ; unknown ; N/A GL192389.1 samtools variation 925502 925502 . . . alleles " A C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192389.1 samtools variation 925508 925508 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192389.1 samtools variation 932067 932067 . . . alleles " A G"; frequencies " 0.47972972972973 0.52027027027027"; depth 148 ; unknown ; N/A GL192389.1 samtools variation 932109 932109 . . . alleles " A G"; frequencies " 0.480263157894737 0.519736842105263"; depth 152 ; unknown ; N/A GL192389.1 samtools variation 965938 965938 . . . alleles " G A"; frequencies " 0.779220779220779 0.220779220779221"; depth 77 ; unknown ; non-synonymous GL192389.1 samtools variation 967202 967202 . . . alleles " T G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192389.1 samtools variation 967602 967602 . . . alleles " C T"; frequencies " 0.431372549019608 0.568627450980392"; depth 51 ; unknown ; non-synonymous GL192389.1 samtools variation 967816 967816 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; synonymous GL192389.1 samtools variation 1633641 1633641 . . . alleles " T C"; frequencies " 0.524663677130045 0.475336322869955"; depth 223 ; unknown ; N/A GL192389.1 samtools variation 1634800 1634800 . . . alleles " T G"; frequencies " 0.594059405940594 0.405940594059406"; depth 101 ; unknown ; N/A GL192389.1 samtools variation 1635079 1635079 . . . alleles " A G"; frequencies " 0.742857142857143 0.257142857142857"; depth 70 ; unknown ; N/A GL192389.1 samtools variation 1642433 1642433 . . . alleles " A G"; frequencies " 0.718085106382979 0.281914893617021"; depth 188 ; unknown ; synonymous GL192389.1 samtools variation 1846590 1846590 . . . alleles " A C"; frequencies " 0.3 0.7"; depth 120 ; unknown ; N/A GL192389.1 samtools variation 1846754 1846754 . . . alleles " A T"; frequencies " 0.294117647058824 0.705882352941177"; depth 34 ; unknown ; N/A GL192389.1 samtools variation 1847477 1847477 . . . alleles " C T"; frequencies " 0.31615925058548 0.68384074941452"; depth 427 ; unknown ; N/A GL192389.1 samtools variation 1860367 1860367 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL192389.1 samtools variation 1932534 1932534 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192389.1 samtools variation 1939904 1939904 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 60 ; unknown ; N/A GL192389.1 samtools variation 1947286 1947286 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192389.1 samtools variation 1955253 1955253 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 48 ; unknown ; N/A GL192389.1 samtools variation 1957977 1957977 . . . alleles " C A"; frequencies " 0.757396449704142 0.242603550295858"; depth 169 ; unknown ; N/A GL192389.1 samtools variation 1967230 1967230 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192389.1 samtools variation 1971752 1971752 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192389.1 samtools variation 1972756 1972756 . . . alleles " C T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192389.1 samtools variation 1977221 1977221 . . . alleles " T C"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; unknown ; N/A GL192389.1 samtools variation 1977222 1977222 . . . alleles " T C"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL192389.1 samtools variation 2761242 2761242 . . . alleles " T C"; frequencies " 0.353591160220994 0.646408839779006"; depth 181 ; unknown ; N/A GL192389.1 samtools variation 2763713 2763713 . . . alleles " T G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192389.1 samtools variation 2952591 2952591 . . . alleles " T C"; frequencies " 0.622641509433962 0.377358490566038"; depth 53 ; unknown ; N/A GL192389.1 samtools variation 2959640 2959640 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192389.1 samtools variation 2964885 2964885 . . . alleles " C T"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; N/A GL192389.1 samtools variation 2967789 2967789 . . . alleles " T G"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192390.1 samtools variation 191450 191450 . . . alleles " A G"; frequencies " 0.794642857142857 0.205357142857143"; depth 112 ; unknown ; synonymous GL192390.1 samtools variation 333551 333551 . . . alleles " T G"; frequencies " 0.592 0.408"; depth 125 ; unknown ; N/A GL192390.1 samtools variation 336120 336120 . . . alleles " G A"; frequencies " 0.480769230769231 0.519230769230769"; depth 52 ; unknown ; synonymous GL192390.1 samtools variation 465566 465566 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192390.1 samtools variation 465796 465796 . . . alleles " G A"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192390.1 samtools variation 467015 467015 . . . alleles " C A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192390.1 samtools variation 467066 467066 . . . alleles " C G"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192390.1 samtools variation 467138 467138 . . . alleles " T G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192390.1 samtools variation 467204 467204 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192390.1 samtools variation 489957 489957 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192390.1 samtools variation 490295 490295 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192390.1 samtools variation 494192 494192 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192390.1 samtools variation 494196 494196 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192390.1 samtools variation 494316 494316 . . . alleles " C A"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL192390.1 samtools variation 3124153 3124153 . . . alleles " G C"; frequencies " 0.558139534883721 0.441860465116279"; depth 43 ; unknown ; N/A GL192391.1 samtools variation 170557 170557 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192391.1 samtools variation 320201 320201 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 25 ; known ; synonymous GL192391.1 samtools variation 753451 753451 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 82 ; unknown ; N/A GL192391.1 samtools variation 762924 762924 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192391.1 samtools variation 762925 762925 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192391.1 samtools variation 856646 856646 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; synonymous GL192391.1 samtools variation 858141 858141 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; non-synonymous GL192391.1 samtools variation 858690 858690 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; synonymous GL192391.1 samtools variation 881041 881041 . . . alleles " G T"; frequencies " 0.5875 0.4125"; depth 80 ; unknown ; N/A GL192391.1 samtools variation 881117 881117 . . . alleles " C T"; frequencies " 0.486486486486487 0.513513513513513"; depth 37 ; known ; N/A GL192391.1 samtools variation 881864 881864 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192391.1 samtools variation 881910 881910 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL192391.1 samtools variation 882215 882215 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 147 ; known ; N/A GL192391.1 samtools variation 882263 882263 . . . alleles " A G"; frequencies " 0.252941176470588 0.741176470588235"; depth 170 ; known ; N/A GL192391.1 samtools variation 883046 883046 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL192391.1 samtools variation 883361 883361 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL192391.1 samtools variation 884986 884986 . . . alleles " C A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192391.1 samtools variation 885167 885167 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192391.1 samtools variation 886004 886004 . . . alleles " G T"; frequencies " 0.656565656565657 0.343434343434343"; depth 99 ; known ; synonymous GL192391.1 samtools variation 886139 886139 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 80 ; known ; synonymous GL192391.1 samtools variation 886566 886566 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192391.1 samtools variation 886646 886646 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192391.1 samtools variation 904561 904561 . . . alleles " G T"; frequencies " 0.629213483146067 0.370786516853933"; depth 89 ; unknown ; synonymous GL192391.1 samtools variation 905838 905838 . . . alleles " G T"; frequencies " 0.645454545454546 0.354545454545455"; depth 110 ; unknown ; non-synonymous GL192391.1 samtools variation 922777 922777 . . . alleles " C T"; frequencies " 0.7625 0.2375"; depth 240 ; known ; N/A GL192391.1 samtools variation 922932 922932 . . . alleles " G A"; frequencies " 0.653846153846154 0.346153846153846"; depth 52 ; known ; N/A GL192391.1 samtools variation 923094 923094 . . . alleles " A G"; frequencies " 0.659574468085106 0.340425531914894"; depth 47 ; known ; synonymous GL192391.1 samtools variation 990796 990796 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 49 ; unknown ; N/A GL192391.1 samtools variation 991284 991284 . . . alleles " T G"; frequencies " 0.377358490566038 0.622641509433962"; depth 53 ; known ; synonymous GL192391.1 samtools variation 1020716 1020716 . . . alleles " G A"; frequencies " 0.755102040816326 0.244897959183673"; depth 98 ; known ; non-synonymous GL192391.1 samtools variation 1331835 1331835 . . . alleles " T G"; frequencies " 0.755102040816326 0.244897959183673"; depth 49 ; unknown ; N/A GL192391.1 samtools variation 1331895 1331895 . . . alleles " C A"; frequencies " 0.5125 0.4875"; depth 80 ; unknown ; N/A GL192391.1 samtools variation 1440468 1440468 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; known ; non-synonymous GL192391.1 samtools variation 1461495 1461495 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192391.1 samtools variation 1462638 1462638 . . . alleles " C A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192391.1 samtools variation 1462926 1462926 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; synonymous GL192391.1 samtools variation 1474403 1474403 . . . alleles " A G"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192391.1 samtools variation 1474724 1474724 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192391.1 samtools variation 1475552 1475552 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 39 ; unknown ; synonymous GL192391.1 samtools variation 1477718 1477718 . . . alleles " G A"; frequencies " 0.425 0.575"; depth 120 ; known ; N/A GL192391.1 samtools variation 1477748 1477748 . . . alleles " T C"; frequencies " 0.38961038961039 0.61038961038961"; depth 77 ; known ; N/A GL192391.1 samtools variation 1479806 1479806 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 52 ; known ; N/A GL192391.1 samtools variation 1480518 1480518 . . . alleles " T C"; frequencies " 0.520547945205479 0.479452054794521"; depth 73 ; known ; N/A GL192391.1 samtools variation 1480667 1480667 . . . alleles " T C"; frequencies " 0.492063492063492 0.507936507936508"; depth 63 ; known ; N/A GL192391.1 samtools variation 1481181 1481181 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL192391.1 samtools variation 1481308 1481308 . . . alleles " G A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192391.1 samtools variation 1481389 1481389 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 42 ; known ; N/A GL192391.1 samtools variation 1482106 1482106 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 68 ; known ; non-synonymous GL192391.1 samtools variation 1482416 1482416 . . . alleles " T C"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; known ; non-synonymous GL192391.1 samtools variation 1482542 1482542 . . . alleles " G A"; frequencies " 0.485294117647059 0.514705882352941"; depth 68 ; known ; non-synonymous GL192391.1 samtools variation 1484165 1484165 . . . alleles " G T"; frequencies " 0.681818181818182 0.318181818181818"; depth 44 ; known ; N/A GL192391.1 samtools variation 1521161 1521161 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 25 ; known ; synonymous GL192391.1 samtools variation 1546847 1546847 . . . alleles " T C"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; known ; synonymous GL192391.1 samtools variation 1559962 1559962 . . . alleles " G A"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; synonymous GL192391.1 samtools variation 1564559 1564559 . . . alleles " A G"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; unknown ; N/A GL192391.1 samtools variation 1564770 1564770 . . . alleles " C T"; frequencies " 0.702127659574468 0.297872340425532"; depth 47 ; unknown ; N/A GL192391.1 samtools variation 1566752 1566752 . . . alleles " G A"; frequencies " 0.557377049180328 0.442622950819672"; depth 61 ; unknown ; N/A GL192391.1 samtools variation 1566837 1566837 . . . alleles " A G"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; known ; N/A GL192391.1 samtools variation 1571263 1571263 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; unknown ; N/A GL192391.1 samtools variation 1571676 1571676 . . . alleles " G A"; frequencies " 0.638676844783715 0.361323155216285"; depth 393 ; unknown ; synonymous GL192391.1 samtools variation 1572140 1572140 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 85 ; known ; N/A GL192391.1 samtools variation 1573456 1573456 . . . alleles " G T"; frequencies " 0.667574931880109 0.329700272479564"; depth 367 ; known ; synonymous GL192391.1 samtools variation 1573777 1573777 . . . alleles " G T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192391.1 samtools variation 1575047 1575047 . . . alleles " A G"; frequencies " 0.29608938547486 0.70391061452514"; depth 358 ; known ; N/A GL192391.1 samtools variation 1575054 1575054 . . . alleles " C T"; frequencies " 0.707602339181287 0.292397660818713"; depth 342 ; unknown ; N/A GL192391.1 samtools variation 1575159 1575159 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192391.1 samtools variation 1580439 1580439 . . . alleles " A G"; frequencies " 0.289156626506024 0.710843373493976"; depth 83 ; known ; N/A GL192391.1 samtools variation 1580782 1580782 . . . alleles " A G"; frequencies " 0.513513513513513 0.486486486486487"; depth 37 ; known ; N/A GL192391.1 samtools variation 1580823 1580823 . . . alleles " T C"; frequencies " 0.487179487179487 0.512820512820513"; depth 39 ; known ; N/A GL192391.1 samtools variation 1581764 1581764 . . . alleles " T C"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; non-synonymous GL192391.1 samtools variation 1581849 1581849 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; synonymous GL192391.1 samtools variation 1626976 1626976 . . . alleles " G A"; frequencies " 0.676923076923077 0.323076923076923"; depth 65 ; known ; N/A GL192391.1 samtools variation 1635508 1635508 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; non-synonymous GL192391.1 samtools variation 1720041 1720041 . . . alleles " A G"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; known ; synonymous GL192391.1 samtools variation 1720332 1720332 . . . alleles " G A"; frequencies " 0.701492537313433 0.298507462686567"; depth 67 ; unknown ; synonymous GL192391.1 samtools variation 1721106 1721106 . . . alleles " T G"; frequencies " 0.645569620253165 0.354430379746835"; depth 79 ; known ; non-synonymous GL192391.1 samtools variation 1721168 1721168 . . . alleles " G A"; frequencies " 0.359649122807018 0.640350877192982"; depth 114 ; known ; non-synonymous GL192391.1 samtools variation 1722798 1722798 . . . alleles " C T"; frequencies " 0.355555555555556 0.644444444444444"; depth 45 ; known ; N/A GL192391.1 samtools variation 1722818 1722818 . . . alleles " G A"; frequencies " 0.342105263157895 0.657894736842105"; depth 38 ; known ; N/A GL192391.1 samtools variation 1814133 1814133 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192391.1 samtools variation 1815486 1815486 . . . alleles " A G"; frequencies " 0.472222222222222 0.527777777777778"; depth 36 ; known ; N/A GL192391.1 samtools variation 1822260 1822260 . . . alleles " G C"; frequencies " 0.70440251572327 0.29559748427673"; depth 159 ; unknown ; non-synonymous GL192391.1 samtools variation 1834800 1834800 . . . alleles " G A"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; known ; synonymous GL192391.1 samtools variation 1849434 1849434 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192391.1 samtools variation 1849486 1849486 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192391.1 samtools variation 1857625 1857625 . . . alleles " T A"; frequencies " 0.40948275862069 0.59051724137931"; depth 232 ; known ; synonymous GL192391.1 samtools variation 1929750 1929750 . . . alleles " C T"; frequencies " 0.78494623655914 0.21505376344086"; depth 93 ; known ; N/A GL192391.1 samtools variation 1929786 1929786 . . . alleles " T C"; frequencies " 0.787610619469027 0.212389380530973"; depth 113 ; known ; N/A GL192391.1 samtools variation 1929915 1929915 . . . alleles " C T"; frequencies " 0.778846153846154 0.221153846153846"; depth 104 ; known ; N/A GL192391.1 samtools variation 1948225 1948225 . . . alleles " C T"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; synonymous GL192391.1 samtools variation 1949225 1949225 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; synonymous GL192391.1 samtools variation 1951100 1951100 . . . alleles " C A"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; synonymous GL192391.1 samtools variation 1951759 1951759 . . . alleles " C T"; frequencies " 0.311111111111111 0.688888888888889"; depth 45 ; known ; synonymous GL192391.1 samtools variation 1954816 1954816 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; synonymous GL192391.1 samtools variation 1955295 1955295 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 39 ; known ; synonymous GL192391.1 samtools variation 1956384 1956384 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 72 ; known ; synonymous GL192391.1 samtools variation 1958416 1958416 . . . alleles " T C"; frequencies " 0.422018348623853 0.577981651376147"; depth 109 ; known ; synonymous GL192391.1 samtools variation 1959320 1959320 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192391.1 samtools variation 1959641 1959641 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 70 ; known ; non-synonymous GL192391.1 samtools variation 1965170 1965170 . . . alleles " G C"; frequencies " 0.596153846153846 0.403846153846154"; depth 104 ; known ; N/A GL192391.1 samtools variation 1966474 1966474 . . . alleles " T A"; frequencies " 0.349056603773585 0.650943396226415"; depth 318 ; known ; synonymous GL192391.1 samtools variation 1966776 1966776 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; known ; N/A GL192391.1 samtools variation 1967095 1967095 . . . alleles " T C"; frequencies " 0.797101449275362 0.202898550724638"; depth 138 ; known ; non-synonymous GL192391.1 samtools variation 1967885 1967885 . . . alleles " C T"; frequencies " 0.77 0.23"; depth 100 ; known ; synonymous GL192391.1 samtools variation 1971434 1971434 . . . alleles " G A"; frequencies " 0.757763975155279 0.242236024844721"; depth 322 ; known ; synonymous GL192391.1 samtools variation 1971686 1971686 . . . alleles " C T"; frequencies " 0.317204301075269 0.682795698924731"; depth 186 ; known ; synonymous GL192391.1 samtools variation 1971981 1971981 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 28 ; known ; N/A GL192391.1 samtools variation 1972722 1972722 . . . alleles " G T"; frequencies " 0.29 0.71"; depth 200 ; known ; synonymous GL192391.1 samtools variation 1973296 1973296 . . . alleles " C T"; frequencies " 0.3125 0.6875"; depth 160 ; known ; synonymous GL192391.1 samtools variation 1973671 1973671 . . . alleles " A C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192391.1 samtools variation 1973922 1973922 . . . alleles " G A"; frequencies " 0.519230769230769 0.480769230769231"; depth 52 ; known ; N/A GL192391.1 samtools variation 1974000 1974000 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; known ; N/A GL192391.1 samtools variation 1974167 1974167 . . . alleles " T C"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; known ; N/A GL192391.1 samtools variation 1974180 1974180 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; N/A GL192391.1 samtools variation 1975389 1975389 . . . alleles " T C"; frequencies " 0.78125 0.21875"; depth 64 ; known ; N/A GL192391.1 samtools variation 1975892 1975892 . . . alleles " A G"; frequencies " 0.654867256637168 0.345132743362832"; depth 113 ; known ; N/A GL192391.1 samtools variation 1976998 1976998 . . . alleles " C T"; frequencies " 0.299595141700405 0.700404858299595"; depth 247 ; known ; synonymous GL192391.1 samtools variation 1977173 1977173 . . . alleles " C T"; frequencies " 0.731884057971015 0.268115942028986"; depth 138 ; known ; synonymous GL192391.1 samtools variation 1979403 1979403 . . . alleles " C T"; frequencies " 0.595890410958904 0.404109589041096"; depth 146 ; unknown ; synonymous GL192391.1 samtools variation 1982474 1982474 . . . alleles " G A"; frequencies " 0.383720930232558 0.616279069767442"; depth 86 ; known ; synonymous GL192391.1 samtools variation 2010997 2010997 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; known ; non-synonymous GL192391.1 samtools variation 2014263 2014263 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 20 ; known ; synonymous GL192391.1 samtools variation 2023412 2023412 . . . alleles " C G"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; N/A GL192391.1 samtools variation 2023468 2023468 . . . alleles " T A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; N/A GL192391.1 samtools variation 2024757 2024757 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 57 ; known ; N/A GL192391.1 samtools variation 2026538 2026538 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL192391.1 samtools variation 2026620 2026620 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 231 ; known ; N/A GL192391.1 samtools variation 2026870 2026870 . . . alleles " T C"; frequencies " 0.280898876404494 0.719101123595506"; depth 89 ; known ; N/A GL192391.1 samtools variation 2027082 2027082 . . . alleles " G A"; frequencies " 0.79375 0.20625"; depth 160 ; unknown ; synonymous GL192391.1 samtools variation 2027115 2027115 . . . alleles " T C"; frequencies " 0.748387096774194 0.251612903225806"; depth 155 ; known ; synonymous GL192391.1 samtools variation 2030128 2030128 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192391.1 samtools variation 2031099 2031099 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192391.1 samtools variation 2058482 2058482 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 105 ; unknown ; N/A GL192391.1 samtools variation 2066845 2066845 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192391.1 samtools variation 2077923 2077923 . . . alleles " T A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192391.1 samtools variation 2167483 2167483 . . . alleles " T C"; frequencies " 0.742105263157895 0.257894736842105"; depth 190 ; unknown ; synonymous GL192391.1 samtools variation 2208557 2208557 . . . alleles " G T"; frequencies " 0.683908045977011 0.316091954022989"; depth 174 ; known ; N/A GL192391.1 samtools variation 2223808 2223808 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192391.1 samtools variation 2246697 2246697 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192391.1 samtools variation 2260690 2260690 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192391.1 samtools variation 2297125 2297125 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; unknown ; N/A GL192391.1 samtools variation 2313658 2313658 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192391.1 samtools variation 2314401 2314401 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192391.1 samtools variation 2507951 2507951 . . . alleles " A T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192391.1 samtools variation 2588462 2588462 . . . alleles " G A"; frequencies " 0.590909090909091 0.409090909090909"; depth 44 ; unknown ; N/A GL192391.1 samtools variation 2590112 2590112 . . . alleles " T G"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; known ; N/A GL192391.1 samtools variation 2613188 2613188 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192391.1 samtools variation 2616190 2616190 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192391.1 samtools variation 2624396 2624396 . . . alleles " C T"; frequencies " 0.792079207920792 0.207920792079208"; depth 101 ; unknown ; N/A GL192391.1 samtools variation 2627167 2627167 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192391.1 samtools variation 2649538 2649538 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192391.1 samtools variation 2649570 2649570 . . . alleles " G A"; frequencies " 0.298245614035088 0.701754385964912"; depth 57 ; known ; N/A GL192391.1 samtools variation 2649764 2649764 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 50 ; known ; N/A GL192391.1 samtools variation 2667604 2667604 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192391.1 samtools variation 2667686 2667686 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192391.1 samtools variation 2668099 2668099 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192391.1 samtools variation 2749344 2749344 . . . alleles " G C"; frequencies " 0.633802816901408 0.366197183098592"; depth 71 ; unknown ; N/A GL192391.1 samtools variation 2750223 2750223 . . . alleles " A G"; frequencies " 0.356164383561644 0.643835616438356"; depth 146 ; unknown ; N/A GL192391.1 samtools variation 2752254 2752254 . . . alleles " G T"; frequencies " 0.41304347826087 0.58695652173913"; depth 46 ; unknown ; N/A GL192391.1 samtools variation 2768863 2768863 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192391.1 samtools variation 2789148 2789148 . . . alleles " T G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192391.1 samtools variation 2852514 2852514 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192391.1 samtools variation 2854804 2854804 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 30 ; known ; N/A GL192391.1 samtools variation 2856141 2856141 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL192391.1 samtools variation 2862517 2862517 . . . alleles " A G"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192391.1 samtools variation 2866521 2866521 . . . alleles " G A"; frequencies " 0.767123287671233 0.232876712328767"; depth 146 ; unknown ; synonymous GL192391.1 samtools variation 3028631 3028631 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192391.1 samtools variation 3029317 3029317 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192391.1 samtools variation 3039811 3039811 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192391.1 samtools variation 3069136 3069136 . . . alleles " A G"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; known ; N/A GL192391.1 samtools variation 3069141 3069141 . . . alleles " G C"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; N/A GL192391.1 samtools variation 3070847 3070847 . . . alleles " A G"; frequencies " 0.234800838574423 0.765199161425577"; depth 477 ; known ; N/A GL192391.1 samtools variation 3070990 3070990 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 266 ; known ; N/A GL192391.1 samtools variation 3144968 3144968 . . . alleles " A G"; frequencies " 0.44578313253012 0.55421686746988"; depth 83 ; unknown ; non-synonymous GL192391.1 samtools variation 3145294 3145294 . . . alleles " G A"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; known ; N/A GL192391.1 samtools variation 3157284 3157284 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192391.1 samtools variation 3157377 3157377 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192391.1 samtools variation 3432944 3432944 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192391.1 samtools variation 3433129 3433129 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192391.1 samtools variation 3435781 3435781 . . . alleles " C G"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192391.1 samtools variation 3435869 3435869 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192391.1 samtools variation 3435923 3435923 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192391.1 samtools variation 3435980 3435980 . . . alleles " T C"; frequencies " 0.711065573770492 0.288934426229508"; depth 488 ; unknown ; synonymous GL192391.1 samtools variation 3435989 3435989 . . . alleles " G A"; frequencies " 0.719827586206897 0.280172413793103"; depth 464 ; unknown ; synonymous GL192391.1 samtools variation 3437094 3437094 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192391.1 samtools variation 3437119 3437119 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL192391.1 samtools variation 3437799 3437799 . . . alleles " C T"; frequencies " 0.7001287001287 0.2998712998713"; depth 777 ; unknown ; synonymous GL192391.1 samtools variation 3437861 3437861 . . . alleles " G A"; frequencies " 0.698292220113852 0.301707779886148"; depth 527 ; unknown ; synonymous GL192391.1 samtools variation 3437905 3437905 . . . alleles " C G"; frequencies " 0.551724137931034 0.448275862068966"; depth 58 ; unknown ; N/A GL192391.1 samtools variation 3437933 3437933 . . . alleles " G T"; frequencies " 0.471428571428571 0.528571428571429"; depth 70 ; unknown ; N/A GL192391.1 samtools variation 3437978 3437978 . . . alleles " G T"; frequencies " 0.401709401709402 0.598290598290598"; depth 117 ; unknown ; N/A GL192391.1 samtools variation 3438125 3438125 . . . alleles " T C"; frequencies " 0.463963963963964 0.536036036036036"; depth 222 ; unknown ; N/A GL192391.1 samtools variation 3438303 3438303 . . . alleles " A C"; frequencies " 0.625 0.375"; depth 272 ; unknown ; N/A GL192391.1 samtools variation 3438304 3438304 . . . alleles " C T"; frequencies " 0.633093525179856 0.366906474820144"; depth 278 ; unknown ; N/A GL192391.1 samtools variation 3439408 3439408 . . . alleles " G A"; frequencies " 0.674418604651163 0.325581395348837"; depth 258 ; unknown ; N/A GL192391.1 samtools variation 3439495 3439495 . . . alleles " G C"; frequencies " 0.602076124567474 0.397923875432526"; depth 289 ; unknown ; N/A GL192391.1 samtools variation 3440327 3440327 . . . alleles " C A"; frequencies " 0.553571428571429 0.446428571428571"; depth 112 ; unknown ; N/A GL192391.1 samtools variation 3440397 3440397 . . . alleles " A G"; frequencies " 0.45 0.55"; depth 60 ; unknown ; N/A GL192391.1 samtools variation 3440772 3440772 . . . alleles " C T"; frequencies " 0.737777777777778 0.262222222222222"; depth 225 ; unknown ; N/A GL192391.1 samtools variation 3441007 3441007 . . . alleles " T C"; frequencies " 0.662650602409639 0.337349397590361"; depth 83 ; unknown ; N/A GL192391.1 samtools variation 3441675 3441675 . . . alleles " A T"; frequencies " 0.554166666666667 0.445833333333333"; depth 480 ; unknown ; N/A GL192391.1 samtools variation 3441734 3441734 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 615 ; unknown ; N/A GL192391.1 samtools variation 3442322 3442322 . . . alleles " A C"; frequencies " 0.777777777777778 0.222222222222222"; depth 234 ; unknown ; N/A GL192392.1 samtools variation 1040 1040 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192392.1 samtools variation 4700 4700 . . . alleles " T G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192392.1 samtools variation 4760 4760 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192392.1 samtools variation 5164 5164 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192392.1 samtools variation 6336 6336 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192392.1 samtools variation 8546 8546 . . . alleles " G A"; frequencies " 0.56043956043956 0.43956043956044"; depth 1638 ; known ; N/A GL192392.1 samtools variation 15046 15046 . . . alleles " G A"; frequencies " 0.586422976501305 0.413577023498695"; depth 1915 ; unknown ; synonymous GL192392.1 samtools variation 18824 18824 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192392.1 samtools variation 21295 21295 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192392.1 samtools variation 41328 41328 . . . alleles " C G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL192392.1 samtools variation 62350 62350 . . . alleles " G A"; frequencies " 0.79136690647482 0.20863309352518"; depth 1251 ; known ; synonymous GL192392.1 samtools variation 505989 505989 . . . alleles " C G"; frequencies " 0.758620689655172 0.241379310344828"; depth 580 ; unknown ; synonymous GL192392.1 samtools variation 513318 513318 . . . alleles " T C"; frequencies " 0.264150943396226 0.735849056603774"; depth 53 ; unknown ; N/A GL192392.1 samtools variation 517012 517012 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192392.1 samtools variation 518623 518623 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192392.1 samtools variation 518773 518773 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL192392.1 samtools variation 519219 519219 . . . alleles " T G"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; N/A GL192392.1 samtools variation 521296 521296 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192392.1 samtools variation 521415 521415 . . . alleles " T C"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL192392.1 samtools variation 523469 523469 . . . alleles " G A"; frequencies " 0.730650154798762 0.269349845201238"; depth 323 ; unknown ; N/A GL192392.1 samtools variation 523520 523520 . . . alleles " T C"; frequencies " 0.208121827411168 0.791878172588833"; depth 394 ; unknown ; N/A GL192392.1 samtools variation 527517 527517 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192392.1 samtools variation 560296 560296 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192392.1 samtools variation 562187 562187 . . . alleles " G A"; frequencies " 0.696078431372549 0.303921568627451"; depth 612 ; unknown ; N/A GL192392.1 samtools variation 562230 562230 . . . alleles " C T"; frequencies " 0.502155172413793 0.497844827586207"; depth 464 ; unknown ; non-synonymous GL192392.1 samtools variation 564007 564007 . . . alleles " A G"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192392.1 samtools variation 566878 566878 . . . alleles " C G"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; N/A GL192392.1 samtools variation 567096 567096 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 115 ; unknown ; N/A GL192392.1 samtools variation 567479 567479 . . . alleles " T C"; frequencies " 0.764150943396226 0.235849056603774"; depth 106 ; unknown ; N/A GL192392.1 samtools variation 567565 567565 . . . alleles " A G"; frequencies " 0.382978723404255 0.617021276595745"; depth 94 ; unknown ; N/A GL192392.1 samtools variation 568240 568240 . . . alleles " A C"; frequencies " 0.769230769230769 0.230769230769231"; depth 52 ; unknown ; N/A GL192392.1 samtools variation 568428 568428 . . . alleles " T C"; frequencies " 0.494117647058824 0.505882352941176"; depth 85 ; unknown ; N/A GL192392.1 samtools variation 568476 568476 . . . alleles " C T"; frequencies " 0.769911504424779 0.230088495575221"; depth 113 ; unknown ; N/A GL192392.1 samtools variation 569296 569296 . . . alleles " G A"; frequencies " 0.382352941176471 0.617647058823529"; depth 34 ; unknown ; N/A GL192392.1 samtools variation 569905 569905 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL192392.1 samtools variation 570112 570112 . . . alleles " T C"; frequencies " 0.481122942884802 0.518877057115198"; depth 1033 ; unknown ; synonymous GL192392.1 samtools variation 570115 570115 . . . alleles " C T"; frequencies " 0.706963249516441 0.293036750483559"; depth 1034 ; unknown ; synonymous GL192392.1 samtools variation 571689 571689 . . . alleles " A G"; frequencies " 0.332470892626132 0.667529107373868"; depth 773 ; unknown ; synonymous GL192392.1 samtools variation 573731 573731 . . . alleles " T C"; frequencies " 0.607142857142857 0.392857142857143"; depth 56 ; unknown ; N/A GL192392.1 samtools variation 573733 573733 . . . alleles " A C"; frequencies " 0.339285714285714 0.660714285714286"; depth 56 ; unknown ; N/A GL192392.1 samtools variation 574366 574366 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192392.1 samtools variation 574615 574615 . . . alleles " C T"; frequencies " 0.552770448548813 0.447229551451187"; depth 758 ; unknown ; synonymous GL192392.1 samtools variation 575749 575749 . . . alleles " A G"; frequencies " 0.534883720930233 0.465116279069767"; depth 645 ; unknown ; synonymous GL192392.1 samtools variation 575810 575810 . . . alleles " T C"; frequencies " 0.501639344262295 0.498360655737705"; depth 610 ; unknown ; non-synonymous GL192392.1 samtools variation 576780 576780 . . . alleles " G A"; frequencies " 0.483870967741935 0.516129032258065"; depth 248 ; unknown ; synonymous GL192392.1 samtools variation 577529 577529 . . . alleles " C T"; frequencies " 0.778089887640449 0.221910112359551"; depth 356 ; unknown ; non-synonymous GL192392.1 samtools variation 577632 577632 . . . alleles " G A"; frequencies " 0.508038585209003 0.491961414790997"; depth 933 ; unknown ; N/A GL192392.1 samtools variation 578316 578316 . . . alleles " C T"; frequencies " 0.753061224489796 0.246938775510204"; depth 490 ; unknown ; N/A GL192392.1 samtools variation 578406 578406 . . . alleles " G A"; frequencies " 0.757834757834758 0.242165242165242"; depth 351 ; unknown ; N/A GL192392.1 samtools variation 578932 578932 . . . alleles " C T"; frequencies " 0.732710280373832 0.267289719626168"; depth 535 ; unknown ; N/A GL192392.1 samtools variation 579594 579594 . . . alleles " T C"; frequencies " 0.701067615658363 0.298932384341637"; depth 281 ; unknown ; N/A GL192392.1 samtools variation 579617 579617 . . . alleles " A G"; frequencies " 0.661246612466125 0.336043360433604"; depth 369 ; unknown ; N/A GL192392.1 samtools variation 580680 580680 . . . alleles " C T"; frequencies " 0.316770186335404 0.683229813664596"; depth 161 ; unknown ; N/A GL192392.1 samtools variation 581523 581523 . . . alleles " C T"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; unknown ; N/A GL192392.1 samtools variation 581632 581632 . . . alleles " G A"; frequencies " 0.661016949152542 0.338983050847458"; depth 59 ; unknown ; N/A GL192392.1 samtools variation 581707 581707 . . . alleles " A G"; frequencies " 0.488888888888889 0.511111111111111"; depth 45 ; unknown ; N/A GL192392.1 samtools variation 581861 581861 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 45 ; unknown ; N/A GL192392.1 samtools variation 581939 581939 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 48 ; unknown ; N/A GL192392.1 samtools variation 582715 582715 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192392.1 samtools variation 583096 583096 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192392.1 samtools variation 583497 583497 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192392.1 samtools variation 585863 585863 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192392.1 samtools variation 585892 585892 . . . alleles " A T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192392.1 samtools variation 640208 640208 . . . alleles " A G"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; unknown ; synonymous GL192392.1 samtools variation 640217 640217 . . . alleles " C T"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; unknown ; synonymous GL192392.1 samtools variation 659461 659461 . . . alleles " T A"; frequencies " 0.539130434782609 0.460869565217391"; depth 115 ; unknown ; non-synonymous GL192392.1 samtools variation 659780 659780 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 198 ; unknown ; N/A GL192392.1 samtools variation 659900 659900 . . . alleles " T G"; frequencies " 0.56140350877193 0.43859649122807"; depth 171 ; unknown ; N/A GL192392.1 samtools variation 677067 677067 . . . alleles " G A"; frequencies " 0.651376146788991 0.344036697247706"; depth 218 ; unknown ; synonymous GL192392.1 samtools variation 677242 677242 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192392.1 samtools variation 682306 682306 . . . alleles " C G"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL192392.1 samtools variation 682353 682353 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192392.1 samtools variation 732905 732905 . . . alleles " G A"; frequencies " 0.784883720930233 0.215116279069767"; depth 172 ; unknown ; N/A GL192392.1 samtools variation 734639 734639 . . . alleles " G A"; frequencies " 0.358333333333333 0.641666666666667"; depth 120 ; unknown ; non-synonymous GL192392.1 samtools variation 735165 735165 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192392.1 samtools variation 739312 739312 . . . alleles " G A"; frequencies " 0.319587628865979 0.680412371134021"; depth 97 ; unknown ; synonymous GL192392.1 samtools variation 744164 744164 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192392.1 samtools variation 809375 809375 . . . alleles " G A"; frequencies " 0.67032967032967 0.32967032967033"; depth 91 ; unknown ; N/A GL192392.1 samtools variation 809570 809570 . . . alleles " T C"; frequencies " 0.677777777777778 0.322222222222222"; depth 90 ; unknown ; N/A GL192392.1 samtools variation 809709 809709 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192392.1 samtools variation 809753 809753 . . . alleles " C G"; frequencies " 0.595744680851064 0.404255319148936"; depth 47 ; unknown ; N/A GL192392.1 samtools variation 809976 809976 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 49 ; unknown ; N/A GL192392.1 samtools variation 810712 810712 . . . alleles " C T"; frequencies " 0.469750889679715 0.530249110320285"; depth 843 ; unknown ; N/A GL192392.1 samtools variation 810813 810813 . . . alleles " C A"; frequencies " 0.617336152219873 0.382663847780127"; depth 946 ; unknown ; N/A GL192392.1 samtools variation 811060 811060 . . . alleles " T A"; frequencies " 0.355667506297229 0.644332493702771"; depth 1985 ; unknown ; N/A GL192392.1 samtools variation 811069 811069 . . . alleles " G A"; frequencies " 0.685551163812033 0.314448836187967"; depth 2277 ; unknown ; N/A GL192392.1 samtools variation 811220 811220 . . . alleles " C T"; frequencies " 0.700526711813394 0.298720842738901"; depth 1329 ; unknown ; N/A GL192392.1 samtools variation 811284 811284 . . . alleles " C T"; frequencies " 0.625891946992864 0.374108053007136"; depth 981 ; unknown ; N/A GL192392.1 samtools variation 811312 811312 . . . alleles " C T"; frequencies " 0.281065088757396 0.717455621301775"; depth 1352 ; unknown ; N/A GL192392.1 samtools variation 812231 812231 . . . alleles " T C"; frequencies " 0.518987341772152 0.481012658227848"; depth 79 ; unknown ; N/A GL192392.1 samtools variation 812365 812365 . . . alleles " G C"; frequencies " 0.511111111111111 0.488888888888889"; depth 45 ; unknown ; N/A GL192392.1 samtools variation 812501 812501 . . . alleles " T G"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL192392.1 samtools variation 812620 812620 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 60 ; unknown ; N/A GL192392.1 samtools variation 812706 812706 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 50 ; unknown ; N/A GL192392.1 samtools variation 813137 813137 . . . alleles " A G"; frequencies " 0.577777777777778 0.422222222222222"; depth 90 ; unknown ; N/A GL192392.1 samtools variation 813211 813211 . . . alleles " A G"; frequencies " 0.484848484848485 0.515151515151515"; depth 66 ; unknown ; N/A GL192392.1 samtools variation 813343 813343 . . . alleles " T C"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL192392.1 samtools variation 813470 813470 . . . alleles " T C"; frequencies " 0.725490196078431 0.274509803921569"; depth 51 ; unknown ; N/A GL192392.1 samtools variation 813610 813610 . . . alleles " G A"; frequencies " 0.73015873015873 0.26984126984127"; depth 63 ; unknown ; N/A GL192392.1 samtools variation 813989 813989 . . . alleles " C A"; frequencies " 0.557377049180328 0.262295081967213"; depth 61 ; unknown ; N/A GL192392.1 samtools variation 814018 814018 . . . alleles " A G"; frequencies " 0.577777777777778 0.422222222222222"; depth 45 ; unknown ; N/A GL192392.1 samtools variation 814475 814475 . . . alleles " G A"; frequencies " 0.653333333333333 0.346666666666667"; depth 75 ; unknown ; N/A GL192392.1 samtools variation 815145 815145 . . . alleles " A G"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; unknown ; N/A GL192392.1 samtools variation 815153 815153 . . . alleles " T C"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL192392.1 samtools variation 815716 815716 . . . alleles " T C"; frequencies " 0.787878787878788 0.212121212121212"; depth 66 ; unknown ; N/A GL192392.1 samtools variation 816714 816714 . . . alleles " A G"; frequencies " 0.51294498381877 0.48705501618123"; depth 1236 ; unknown ; synonymous GL192392.1 samtools variation 860770 860770 . . . alleles " T C"; frequencies " 0.351648351648352 0.648351648351648"; depth 91 ; unknown ; N/A GL192392.1 samtools variation 866045 866045 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192392.1 samtools variation 866176 866176 . . . alleles " T C"; frequencies " 0.296529968454259 0.703470031545741"; depth 317 ; unknown ; synonymous GL192392.1 samtools variation 869967 869967 . . . alleles " C T"; frequencies " 0.423572744014733 0.559852670349908"; depth 543 ; unknown ; synonymous GL192392.1 samtools variation 870400 870400 . . . alleles " C G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL192392.1 samtools variation 877314 877314 . . . alleles " A C"; frequencies " 0.230769230769231 0.769230769230769"; depth 65 ; unknown ; N/A GL192392.1 samtools variation 878103 878103 . . . alleles " G C"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL192392.1 samtools variation 878235 878235 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL192392.1 samtools variation 878259 878259 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192392.1 samtools variation 878478 878478 . . . alleles " G A"; frequencies " 0.388412017167382 0.611587982832618"; depth 466 ; unknown ; synonymous GL192392.1 samtools variation 878533 878533 . . . alleles " T A"; frequencies " 0.349162011173184 0.650837988826816"; depth 358 ; unknown ; non-synonymous GL192392.1 samtools variation 879001 879001 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192392.1 samtools variation 879021 879021 . . . alleles " G T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192392.1 samtools variation 880182 880182 . . . alleles " C T"; frequencies " 0.490666666666667 0.509333333333333"; depth 375 ; unknown ; N/A GL192392.1 samtools variation 880520 880520 . . . alleles " A C"; frequencies " 0.410821643286573 0.589178356713427"; depth 499 ; unknown ; N/A GL192392.1 samtools variation 880601 880601 . . . alleles " A C"; frequencies " 0.364179104477612 0.635820895522388"; depth 335 ; unknown ; N/A GL192392.1 samtools variation 880807 880807 . . . alleles " A G"; frequencies " 0.369127516778524 0.630872483221476"; depth 447 ; unknown ; N/A GL192392.1 samtools variation 881024 881024 . . . alleles " T C"; frequencies " 0.540229885057471 0.459770114942529"; depth 348 ; unknown ; N/A GL192392.1 samtools variation 881049 881049 . . . alleles " A G"; frequencies " 0.531413612565445 0.468586387434555"; depth 382 ; unknown ; N/A GL192392.1 samtools variation 881389 881389 . . . alleles " T C"; frequencies " 0.307277628032345 0.692722371967655"; depth 371 ; unknown ; N/A GL192392.1 samtools variation 883280 883280 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192392.1 samtools variation 883890 883890 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192392.1 samtools variation 883927 883927 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192392.1 samtools variation 1024911 1024911 . . . alleles " C T"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL192392.1 samtools variation 1030802 1030802 . . . alleles " A G"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192392.1 samtools variation 1032108 1032108 . . . alleles " G A"; frequencies " 0.595744680851064 0.404255319148936"; depth 47 ; unknown ; N/A GL192392.1 samtools variation 1032439 1032439 . . . alleles " C A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192392.1 samtools variation 1033201 1033201 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192392.1 samtools variation 1034556 1034556 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192392.1 samtools variation 1149074 1149074 . . . alleles " C T"; frequencies " 0.417159763313609 0.582840236686391"; depth 338 ; unknown ; non-synonymous GL192392.1 samtools variation 1164977 1164977 . . . alleles " A C"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL192392.1 samtools variation 1241277 1241277 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192392.1 samtools variation 1303795 1303795 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL192392.1 samtools variation 1304172 1304172 . . . alleles " A G"; frequencies " 0.795 0.205"; depth 200 ; unknown ; N/A GL192392.1 samtools variation 1323355 1323355 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 69 ; unknown ; synonymous GL192392.1 samtools variation 1325248 1325248 . . . alleles " C T"; frequencies " 0.618729096989967 0.381270903010033"; depth 299 ; unknown ; synonymous GL192392.1 samtools variation 1337748 1337748 . . . alleles " G A"; frequencies " 0.632850241545894 0.367149758454106"; depth 207 ; unknown ; synonymous GL192392.1 samtools variation 1383759 1383759 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL192392.1 samtools variation 1384620 1384620 . . . alleles " G A"; frequencies " 0.763975155279503 0.236024844720497"; depth 161 ; unknown ; N/A GL192392.1 samtools variation 1384714 1384714 . . . alleles " T C"; frequencies " 0.357512953367876 0.642487046632124"; depth 193 ; unknown ; N/A GL192392.1 samtools variation 1501302 1501302 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192392.1 samtools variation 1536878 1536878 . . . alleles " A G"; frequencies " 0.691176470588235 0.308823529411765"; depth 68 ; unknown ; N/A GL192392.1 samtools variation 1537249 1537249 . . . alleles " T C"; frequencies " 0.410714285714286 0.589285714285714"; depth 56 ; unknown ; N/A GL192392.1 samtools variation 1538405 1538405 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; unknown ; synonymous GL192392.1 samtools variation 1539665 1539665 . . . alleles " T C"; frequencies " 0.32 0.68"; depth 25 ; unknown ; synonymous GL192392.1 samtools variation 1539832 1539832 . . . alleles " C G"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; N/A GL192392.1 samtools variation 1549451 1549451 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192392.1 samtools variation 1549695 1549695 . . . alleles " G A"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; N/A GL192392.1 samtools variation 1549730 1549730 . . . alleles " G T"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL192392.1 samtools variation 1549944 1549944 . . . alleles " A C"; frequencies " 0.436363636363636 0.563636363636364"; depth 55 ; unknown ; N/A GL192392.1 samtools variation 1550284 1550284 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192392.1 samtools variation 1550513 1550513 . . . alleles " G A"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; N/A GL192392.1 samtools variation 1551748 1551748 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192392.1 samtools variation 1555440 1555440 . . . alleles " T C"; frequencies " 0.390243902439024 0.609756097560976"; depth 41 ; unknown ; synonymous GL192392.1 samtools variation 1583340 1583340 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 48 ; unknown ; synonymous GL192392.1 samtools variation 1583351 1583351 . . . alleles " G T"; frequencies " 0.625 0.375"; depth 48 ; unknown ; non-synonymous GL192392.1 samtools variation 1616835 1616835 . . . alleles " A G"; frequencies " 0.236363636363636 0.763636363636364"; depth 110 ; unknown ; N/A GL192392.1 samtools variation 1618516 1618516 . . . alleles " C T"; frequencies " 0.61 0.39"; depth 100 ; unknown ; N/A GL192392.1 samtools variation 1628310 1628310 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192392.1 samtools variation 1638433 1638433 . . . alleles " G A"; frequencies " 0.646153846153846 0.353846153846154"; depth 65 ; unknown ; synonymous GL192392.1 samtools variation 1676151 1676151 . . . alleles " A G"; frequencies " 0.563829787234043 0.436170212765957"; depth 188 ; unknown ; N/A GL192392.1 samtools variation 1676174 1676174 . . . alleles " G A"; frequencies " 0.668316831683168 0.331683168316832"; depth 202 ; unknown ; N/A GL192392.1 samtools variation 1677200 1677200 . . . alleles " C T"; frequencies " 0.691358024691358 0.308641975308642"; depth 81 ; unknown ; N/A GL192392.1 samtools variation 1677644 1677644 . . . alleles " G T"; frequencies " 0.586206896551724 0.413793103448276"; depth 58 ; unknown ; N/A GL192392.1 samtools variation 1685528 1685528 . . . alleles " C T"; frequencies " 0.63436928702011 0.36563071297989"; depth 547 ; unknown ; synonymous GL192392.1 samtools variation 1778251 1778251 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 56 ; unknown ; N/A GL192392.1 samtools variation 1778365 1778365 . . . alleles " C T"; frequencies " 0.563636363636364 0.436363636363636"; depth 55 ; unknown ; N/A GL192392.1 samtools variation 1780632 1780632 . . . alleles " T C"; frequencies " 0.678780773739742 0.321219226260258"; depth 853 ; unknown ; N/A GL192392.1 samtools variation 1948455 1948455 . . . alleles " G C"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; unknown ; N/A GL192392.1 samtools variation 1950704 1950704 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192392.1 samtools variation 1953492 1953492 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192392.1 samtools variation 1958018 1958018 . . . alleles " G A"; frequencies " 0.59375 0.40625"; depth 96 ; unknown ; N/A GL192392.1 samtools variation 1958331 1958331 . . . alleles " C T"; frequencies " 0.645569620253165 0.354430379746835"; depth 79 ; unknown ; N/A GL192392.1 samtools variation 1992176 1992176 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192392.1 samtools variation 2001382 2001382 . . . alleles " C T"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL192392.1 samtools variation 2003357 2003357 . . . alleles " C T"; frequencies " 0.652777777777778 0.347222222222222"; depth 72 ; unknown ; N/A GL192392.1 samtools variation 2012398 2012398 . . . alleles " C T"; frequencies " 0.724137931034483 0.275862068965517"; depth 87 ; unknown ; N/A GL192392.1 samtools variation 2040691 2040691 . . . alleles " C T"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; unknown ; N/A GL192392.1 samtools variation 2040817 2040817 . . . alleles " A G"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL192392.1 samtools variation 2040958 2040958 . . . alleles " A G"; frequencies " 0.612244897959184 0.387755102040816"; depth 49 ; unknown ; N/A GL192392.1 samtools variation 2044805 2044805 . . . alleles " T G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192392.1 samtools variation 2045143 2045143 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192392.1 samtools variation 2045558 2045558 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192392.1 samtools variation 2047463 2047463 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192392.1 samtools variation 2100832 2100832 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; N/A GL192392.1 samtools variation 2106125 2106125 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 40 ; unknown ; synonymous GL192392.1 samtools variation 2162011 2162011 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; non-synonymous GL192392.1 samtools variation 2182606 2182606 . . . alleles " T C"; frequencies " 0.779661016949153 0.220338983050847"; depth 59 ; unknown ; N/A GL192392.1 samtools variation 2185614 2185614 . . . alleles " G A"; frequencies " 0.753684210526316 0.246315789473684"; depth 475 ; unknown ; N/A GL192392.1 samtools variation 2186346 2186346 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192392.1 samtools variation 2186437 2186437 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192392.1 samtools variation 2187607 2187607 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192392.1 samtools variation 2188004 2188004 . . . alleles " A C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192392.1 samtools variation 2189269 2189269 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192392.1 samtools variation 2189918 2189918 . . . alleles " G T"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; unknown ; N/A GL192392.1 samtools variation 2190606 2190606 . . . alleles " A G"; frequencies " 0.703703703703704 0.296296296296296"; depth 81 ; unknown ; N/A GL192392.1 samtools variation 2190930 2190930 . . . alleles " G T"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL192392.1 samtools variation 2191317 2191317 . . . alleles " C T"; frequencies " 0.779329608938548 0.220670391061453"; depth 358 ; unknown ; non-synonymous GL192392.1 samtools variation 2191354 2191354 . . . alleles " G T"; frequencies " 0.442307692307692 0.557692307692308"; depth 52 ; unknown ; N/A GL192392.1 samtools variation 2191842 2191842 . . . alleles " G T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192392.1 samtools variation 2192051 2192051 . . . alleles " A G"; frequencies " 0.469750889679715 0.530249110320285"; depth 281 ; unknown ; non-synonymous GL192392.1 samtools variation 2192291 2192291 . . . alleles " A C"; frequencies " 0.508379888268156 0.491620111731844"; depth 358 ; unknown ; non-synonymous GL192392.1 samtools variation 2192370 2192370 . . . alleles " G C"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; unknown ; N/A GL192392.1 samtools variation 2192475 2192475 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192392.1 samtools variation 2193027 2193027 . . . alleles " C T"; frequencies " 0.725806451612903 0.274193548387097"; depth 558 ; unknown ; N/A GL192392.1 samtools variation 2205962 2205962 . . . alleles " C T"; frequencies " 0.671111111111111 0.328888888888889"; depth 225 ; unknown ; N/A GL192392.1 samtools variation 2206914 2206914 . . . alleles " C T"; frequencies " 0.766666666666667 0.233333333333333"; depth 60 ; unknown ; N/A GL192392.1 samtools variation 2209722 2209722 . . . alleles " G C"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; N/A GL192392.1 samtools variation 2209771 2209771 . . . alleles " C A"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; unknown ; N/A GL192392.1 samtools variation 2210905 2210905 . . . alleles " G T"; frequencies " 0.794117647058823 0.205882352941176"; depth 102 ; unknown ; N/A GL192392.1 samtools variation 2212564 2212564 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192392.1 samtools variation 2276357 2276357 . . . alleles " C T"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL192392.1 samtools variation 2347957 2347957 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192392.1 samtools variation 2347996 2347996 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192392.1 samtools variation 2352549 2352549 . . . alleles " G C"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192392.1 samtools variation 2437334 2437334 . . . alleles " G C"; frequencies " 0.525 0.475"; depth 40 ; unknown ; synonymous GL192392.1 samtools variation 2444071 2444071 . . . alleles " C G"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; non-synonymous GL192392.1 samtools variation 2444175 2444175 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 51 ; unknown ; synonymous GL192392.1 samtools variation 2445089 2445089 . . . alleles " C T"; frequencies " 0.597222222222222 0.402777777777778"; depth 72 ; unknown ; synonymous GL192392.1 samtools variation 2447758 2447758 . . . alleles " C T"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; synonymous GL192392.1 samtools variation 2449575 2449575 . . . alleles " C T"; frequencies " 0.56989247311828 0.43010752688172"; depth 93 ; unknown ; synonymous GL192392.1 samtools variation 2452991 2452991 . . . alleles " C T"; frequencies " 0.575757575757576 0.424242424242424"; depth 66 ; unknown ; N/A GL192392.1 samtools variation 2453124 2453124 . . . alleles " A G"; frequencies " 0.725490196078431 0.274509803921569"; depth 51 ; unknown ; N/A GL192392.1 samtools variation 2534940 2534940 . . . alleles " T C"; frequencies " 0.720930232558139 0.27906976744186"; depth 43 ; unknown ; synonymous GL192392.1 samtools variation 2535805 2535805 . . . alleles " T G"; frequencies " 0.763157894736842 0.236842105263158"; depth 76 ; unknown ; N/A GL192392.1 samtools variation 2880789 2880789 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192392.1 samtools variation 2889650 2889650 . . . alleles " G T"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192392.1 samtools variation 2890108 2890108 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192392.1 samtools variation 2891545 2891545 . . . alleles " C T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL192392.1 samtools variation 2895290 2895290 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 57 ; known ; N/A GL192392.1 samtools variation 2897498 2897498 . . . alleles " C T"; frequencies " 0.742857142857143 0.257142857142857"; depth 175 ; known ; N/A GL192392.1 samtools variation 2897894 2897894 . . . alleles " G A"; frequencies " 0.434782608695652 0.565217391304348"; depth 46 ; known ; N/A GL192392.1 samtools variation 2897922 2897922 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 56 ; known ; N/A GL192392.1 samtools variation 2898099 2898099 . . . alleles " C T"; frequencies " 0.568421052631579 0.431578947368421"; depth 95 ; unknown ; N/A GL192392.1 samtools variation 2898100 2898100 . . . alleles " A G"; frequencies " 0.568421052631579 0.431578947368421"; depth 95 ; unknown ; N/A GL192392.1 samtools variation 2898346 2898346 . . . alleles " C T"; frequencies " 0.611570247933884 0.388429752066116"; depth 242 ; known ; N/A GL192392.1 samtools variation 2898416 2898416 . . . alleles " G A"; frequencies " 0.513812154696133 0.486187845303867"; depth 181 ; known ; N/A GL192392.1 samtools variation 2899920 2899920 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; N/A GL192392.1 samtools variation 3080621 3080621 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192392.1 samtools variation 3106165 3106165 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192392.1 samtools variation 3152758 3152758 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 39 ; known ; N/A GL192392.1 samtools variation 3175888 3175888 . . . alleles " A G"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; known ; N/A GL192392.1 samtools variation 3189522 3189522 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192392.1 samtools variation 3192933 3192933 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; known ; N/A GL192392.1 samtools variation 3194067 3194067 . . . alleles " T G"; frequencies " 0.411214953271028 0.588785046728972"; depth 107 ; known ; N/A GL192392.1 samtools variation 3194082 3194082 . . . alleles " C A"; frequencies " 0.286821705426357 0.713178294573643"; depth 129 ; known ; N/A GL192392.1 samtools variation 3198128 3198128 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 96 ; known ; N/A GL192392.1 samtools variation 3222578 3222578 . . . alleles " T C"; frequencies " 0.702127659574468 0.297872340425532"; depth 141 ; known ; N/A GL192392.1 samtools variation 3223026 3223026 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; N/A GL192392.1 samtools variation 3223103 3223103 . . . alleles " T C"; frequencies " 0.215384615384615 0.784615384615385"; depth 65 ; known ; N/A GL192392.1 samtools variation 3223870 3223870 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 33 ; known ; N/A GL192392.1 samtools variation 3223877 3223877 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; known ; N/A GL192392.1 samtools variation 3224780 3224780 . . . alleles " T C"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; known ; N/A GL192392.1 samtools variation 3224793 3224793 . . . alleles " C T"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; known ; N/A GL192392.1 samtools variation 3225130 3225130 . . . alleles " T C"; frequencies " 0.217054263565891 0.782945736434108"; depth 129 ; known ; N/A GL192392.1 samtools variation 3225383 3225383 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; known ; N/A GL192392.1 samtools variation 3226194 3226194 . . . alleles " A G"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; known ; N/A GL192392.1 samtools variation 3286606 3286606 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL192392.1 samtools variation 3300579 3300579 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192392.1 samtools variation 3300929 3300929 . . . alleles " T C"; frequencies " 0.721311475409836 0.278688524590164"; depth 61 ; known ; N/A GL192392.1 samtools variation 3302810 3302810 . . . alleles " A G"; frequencies " 0.790322580645161 0.209677419354839"; depth 62 ; unknown ; N/A GL192393.1 samtools variation 212969 212969 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192393.1 samtools variation 213064 213064 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; non-synonymous GL192393.1 samtools variation 213402 213402 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; synonymous GL192393.1 samtools variation 229575 229575 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; non-synonymous GL192393.1 samtools variation 239220 239220 . . . alleles " G A"; frequencies " 0.702702702702703 0.297297297297297"; depth 148 ; unknown ; synonymous GL192393.1 samtools variation 246728 246728 . . . alleles " T C"; frequencies " 0.648648648648649 0.351351351351351"; depth 74 ; unknown ; N/A GL192393.1 samtools variation 246803 246803 . . . alleles " G T"; frequencies " 0.774647887323944 0.225352112676056"; depth 71 ; unknown ; N/A GL192393.1 samtools variation 251747 251747 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192393.1 samtools variation 256300 256300 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192393.1 samtools variation 257193 257193 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192393.1 samtools variation 257920 257920 . . . alleles " T C"; frequencies " 0.674242424242424 0.325757575757576"; depth 132 ; unknown ; N/A GL192393.1 samtools variation 380614 380614 . . . alleles " T C"; frequencies " 0.744186046511628 0.255813953488372"; depth 86 ; unknown ; synonymous GL192393.1 samtools variation 506977 506977 . . . alleles " C G"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; non-synonymous GL192393.1 samtools variation 514469 514469 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192393.1 samtools variation 539771 539771 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; synonymous GL192393.1 samtools variation 545496 545496 . . . alleles " G T"; frequencies " 0.679245283018868 0.320754716981132"; depth 53 ; unknown ; synonymous GL192393.1 samtools variation 545982 545982 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; synonymous GL192393.1 samtools variation 547058 547058 . . . alleles " T G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; synonymous GL192393.1 samtools variation 547175 547175 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; synonymous GL192393.1 samtools variation 547688 547688 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; synonymous GL192393.1 samtools variation 547760 547760 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 40 ; known ; synonymous GL192393.1 samtools variation 647538 647538 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192393.1 samtools variation 1225002 1225002 . . . alleles " A G"; frequencies " 0.328 0.672"; depth 125 ; known ; non-synonymous GL192393.1 samtools variation 1225117 1225117 . . . alleles " T C"; frequencies " 0.710743801652893 0.289256198347107"; depth 121 ; known ; synonymous GL192393.1 samtools variation 1225351 1225351 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 24 ; known ; N/A GL192393.1 samtools variation 1226780 1226780 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192393.1 samtools variation 1227070 1227070 . . . alleles " A G"; frequencies " 0.213592233009709 0.776699029126214"; depth 103 ; known ; synonymous GL192393.1 samtools variation 1232361 1232361 . . . alleles " C T"; frequencies " 0.61214953271028 0.38785046728972"; depth 214 ; unknown ; synonymous GL192393.1 samtools variation 1238252 1238252 . . . alleles " C T"; frequencies " 0.692913385826772 0.307086614173228"; depth 127 ; unknown ; non-synonymous GL192393.1 samtools variation 1238630 1238630 . . . alleles " G T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192393.1 samtools variation 1244285 1244285 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 272 ; unknown ; N/A GL192393.1 samtools variation 1245373 1245373 . . . alleles " A T"; frequencies " 0.741573033707865 0.258426966292135"; depth 89 ; unknown ; N/A GL192393.1 samtools variation 1247051 1247051 . . . alleles " G A"; frequencies " 0.678321678321678 0.318181818181818"; depth 286 ; unknown ; N/A GL192393.1 samtools variation 1318348 1318348 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192393.1 samtools variation 1525433 1525433 . . . alleles " T C"; frequencies " 0.534090909090909 0.465909090909091"; depth 88 ; unknown ; synonymous GL192393.1 samtools variation 3147247 3147247 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192393.1 samtools variation 3154136 3154136 . . . alleles " G A"; frequencies " 0.703397612488522 0.296602387511478"; depth 1089 ; unknown ; non-synonymous GL192393.1 samtools variation 3154638 3154638 . . . alleles " C T"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL192393.1 samtools variation 3158962 3158962 . . . alleles " C T"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL192393.1 samtools variation 3159139 3159139 . . . alleles " C A"; frequencies " 0.525 0.475"; depth 40 ; unknown ; N/A GL192393.1 samtools variation 3159181 3159181 . . . alleles " T A"; frequencies " 0.5625 0.4375"; depth 32 ; unknown ; N/A GL192393.1 samtools variation 3159480 3159480 . . . alleles " T A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192393.1 samtools variation 3159628 3159628 . . . alleles " C A"; frequencies " 0.594202898550725 0.405797101449275"; depth 69 ; unknown ; N/A GL192393.1 samtools variation 3161414 3161414 . . . alleles " T C"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; unknown ; N/A GL192393.1 samtools variation 3161718 3161718 . . . alleles " A C"; frequencies " 0.489795918367347 0.510204081632653"; depth 49 ; unknown ; N/A GL192393.1 samtools variation 3162603 3162603 . . . alleles " T G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192393.1 samtools variation 3164770 3164770 . . . alleles " A G"; frequencies " 0.66006600660066 0.33993399339934"; depth 606 ; unknown ; synonymous GL192393.1 samtools variation 3164909 3164909 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192393.1 samtools variation 3165241 3165241 . . . alleles " T C"; frequencies " 0.534246575342466 0.465753424657534"; depth 73 ; known ; N/A GL192393.1 samtools variation 3165358 3165358 . . . alleles " C T"; frequencies " 0.734939759036145 0.265060240963855"; depth 83 ; unknown ; N/A GL192393.1 samtools variation 3166787 3166787 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192393.1 samtools variation 3168163 3168163 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 60 ; unknown ; N/A GL192393.1 samtools variation 3168576 3168576 . . . alleles " A G"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; known ; N/A GL192393.1 samtools variation 3168580 3168580 . . . alleles " G T"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; N/A GL192393.1 samtools variation 3171425 3171425 . . . alleles " T C"; frequencies " 0.558558558558559 0.441441441441441"; depth 111 ; unknown ; N/A GL192393.1 samtools variation 3171428 3171428 . . . alleles " T G"; frequencies " 0.557522123893805 0.442477876106195"; depth 113 ; unknown ; N/A GL192393.1 samtools variation 3172202 3172202 . . . alleles " C T"; frequencies " 0.569620253164557 0.430379746835443"; depth 79 ; unknown ; N/A GL192393.1 samtools variation 3172275 3172275 . . . alleles " C T"; frequencies " 0.697916666666667 0.302083333333333"; depth 96 ; unknown ; N/A GL192393.1 samtools variation 3173057 3173057 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL192393.1 samtools variation 3185435 3185435 . . . alleles " C T"; frequencies " 0.524390243902439 0.475609756097561"; depth 82 ; known ; N/A GL192393.1 samtools variation 3186307 3186307 . . . alleles " T C"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL192393.1 samtools variation 3187437 3187437 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192393.1 samtools variation 3187447 3187447 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192393.1 samtools variation 3187582 3187582 . . . alleles " A T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192393.1 samtools variation 3188617 3188617 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; N/A GL192393.1 samtools variation 3189500 3189500 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192393.1 samtools variation 3189506 3189506 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192393.1 samtools variation 3190068 3190068 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL192393.1 samtools variation 3190090 3190090 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL192393.1 samtools variation 3190678 3190678 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192393.1 samtools variation 3196795 3196795 . . . alleles " T C"; frequencies " 0.792452830188679 0.207547169811321"; depth 265 ; unknown ; N/A GL192393.1 samtools variation 3204592 3204592 . . . alleles " A G"; frequencies " 0.376271186440678 0.623728813559322"; depth 295 ; known ; N/A GL192393.1 samtools variation 3205076 3205076 . . . alleles " A G"; frequencies " 0.654761904761905 0.345238095238095"; depth 252 ; known ; N/A GL192393.1 samtools variation 3205890 3205890 . . . alleles " A T"; frequencies " 0.538983050847458 0.461016949152542"; depth 295 ; known ; N/A GL192393.1 samtools variation 3206272 3206272 . . . alleles " A T"; frequencies " 0.443548387096774 0.556451612903226"; depth 124 ; known ; N/A GL192393.1 samtools variation 3206467 3206467 . . . alleles " G A"; frequencies " 0.691542288557214 0.308457711442786"; depth 201 ; known ; N/A GL192393.1 samtools variation 3207298 3207298 . . . alleles " G C"; frequencies " 0.645569620253165 0.354430379746835"; depth 79 ; unknown ; N/A GL192393.1 samtools variation 3208216 3208216 . . . alleles " A G"; frequencies " 0.790322580645161 0.209677419354839"; depth 62 ; unknown ; N/A GL192393.1 samtools variation 3208649 3208649 . . . alleles " C A"; frequencies " 0.746031746031746 0.253968253968254"; depth 126 ; unknown ; N/A GL192393.1 samtools variation 3220142 3220142 . . . alleles " A C"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL192393.1 samtools variation 3227938 3227938 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192393.1 samtools variation 3250518 3250518 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 44 ; known ; N/A GL192393.1 samtools variation 3261385 3261385 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 63 ; unknown ; N/A GL192393.1 samtools variation 3261647 3261647 . . . alleles " T C"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL192393.1 samtools variation 3262490 3262490 . . . alleles " T A"; frequencies " 0.742424242424242 0.257575757575758"; depth 132 ; unknown ; N/A GL192394.1 samtools variation 207738 207738 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192394.1 samtools variation 207757 207757 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192394.1 samtools variation 209921 209921 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL192394.1 samtools variation 211779 211779 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192394.1 samtools variation 227360 227360 . . . alleles " T C"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; unknown ; synonymous GL192394.1 samtools variation 447144 447144 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL192394.1 samtools variation 566279 566279 . . . alleles " G A"; frequencies " 0.566243194192377 0.433756805807622"; depth 551 ; unknown ; synonymous GL192394.1 samtools variation 578064 578064 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192394.1 samtools variation 585976 585976 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192394.1 samtools variation 593357 593357 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 20 ; unknown ; non-synonymous GL192394.1 samtools variation 680792 680792 . . . alleles " C G"; frequencies " 0.212765957446809 0.787234042553192"; depth 94 ; known ; non-synonymous GL192394.1 samtools variation 1454523 1454523 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192394.1 samtools variation 1517598 1517598 . . . alleles " G A"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL192394.1 samtools variation 1521298 1521298 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192394.1 samtools variation 1540569 1540569 . . . alleles " A T"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; known ; non-synonymous GL192394.1 samtools variation 1540787 1540787 . . . alleles " C T"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; known ; non-synonymous GL192394.1 samtools variation 1566089 1566089 . . . alleles " T C"; frequencies " 0.740740740740741 0.259259259259259"; depth 54 ; known ; synonymous GL192394.1 samtools variation 1566347 1566347 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 14 ; known ; non-synonymous GL192394.1 samtools variation 1571309 1571309 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL192394.1 samtools variation 1679745 1679745 . . . alleles " T A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192394.1 samtools variation 1679882 1679882 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192394.1 samtools variation 1680170 1680170 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192394.1 samtools variation 1680341 1680341 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192394.1 samtools variation 1697230 1697230 . . . alleles " C G"; frequencies " 0.390977443609023 0.609022556390977"; depth 399 ; known ; non-synonymous GL192394.1 samtools variation 1701006 1701006 . . . alleles " G A"; frequencies " 0.357954545454545 0.642045454545455"; depth 352 ; known ; N/A GL192394.1 samtools variation 1705391 1705391 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192394.1 samtools variation 1706895 1706895 . . . alleles " G T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192394.1 samtools variation 1707505 1707505 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192394.1 samtools variation 1746780 1746780 . . . alleles " A T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192394.1 samtools variation 1776835 1776835 . . . alleles " C T"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; known ; N/A GL192395.1 samtools variation 607001 607001 . . . alleles " G A"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; known ; N/A GL192395.1 samtools variation 616506 616506 . . . alleles " C G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192395.1 samtools variation 618567 618567 . . . alleles " C T"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192395.1 samtools variation 618723 618723 . . . alleles " C A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; known ; N/A GL192395.1 samtools variation 619060 619060 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 25 ; known ; N/A GL192395.1 samtools variation 620337 620337 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192395.1 samtools variation 739338 739338 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192395.1 samtools variation 746792 746792 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192395.1 samtools variation 752554 752554 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192395.1 samtools variation 753739 753739 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192395.1 samtools variation 758919 758919 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192395.1 samtools variation 759101 759101 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192395.1 samtools variation 844220 844220 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192395.1 samtools variation 844235 844235 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192395.1 samtools variation 962193 962193 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192395.1 samtools variation 1046004 1046004 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192395.1 samtools variation 1047909 1047909 . . . alleles " A C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192395.1 samtools variation 1114130 1114130 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192395.1 samtools variation 1135181 1135181 . . . alleles " G A"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; unknown ; N/A GL192395.1 samtools variation 1177454 1177454 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192395.1 samtools variation 1248406 1248406 . . . alleles " T G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192395.1 samtools variation 1254639 1254639 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192395.1 samtools variation 1270795 1270795 . . . alleles " C T"; frequencies " 0.604395604395604 0.395604395604396"; depth 91 ; unknown ; N/A GL192395.1 samtools variation 1271020 1271020 . . . alleles " A G"; frequencies " 0.551020408163265 0.448979591836735"; depth 49 ; unknown ; N/A GL192395.1 samtools variation 1271196 1271196 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192395.1 samtools variation 1277147 1277147 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192395.1 samtools variation 1336423 1336423 . . . alleles " T C"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; N/A GL192395.1 samtools variation 1336834 1336834 . . . alleles " G T"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192395.1 samtools variation 1350085 1350085 . . . alleles " A G"; frequencies " 0.512820512820513 0.487179487179487"; depth 39 ; known ; N/A GL192395.1 samtools variation 1354127 1354127 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192395.1 samtools variation 1804781 1804781 . . . alleles " A G"; frequencies " 0.302325581395349 0.697674418604651"; depth 43 ; unknown ; N/A GL192395.1 samtools variation 1850503 1850503 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192395.1 samtools variation 1869225 1869225 . . . alleles " T G"; frequencies " 0.768060836501901 0.231939163498099"; depth 263 ; unknown ; N/A GL192395.1 samtools variation 1869750 1869750 . . . alleles " C T"; frequencies " 0.676056338028169 0.323943661971831"; depth 71 ; unknown ; N/A GL192395.1 samtools variation 2198373 2198373 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 36 ; known ; synonymous GL192395.1 samtools variation 2198506 2198506 . . . alleles " G A"; frequencies " 0.390243902439024 0.609756097560976"; depth 41 ; known ; non-synonymous GL192395.1 samtools variation 2198530 2198530 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 42 ; known ; non-synonymous GL192395.1 samtools variation 2443117 2443117 . . . alleles " T C"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL192395.1 samtools variation 2448415 2448415 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192395.1 samtools variation 2468628 2468628 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 80 ; known ; synonymous GL192395.1 samtools variation 2474100 2474100 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192395.1 samtools variation 2475222 2475222 . . . alleles " T C"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL192395.1 samtools variation 2478255 2478255 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192395.1 samtools variation 2478963 2478963 . . . alleles " A C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192395.1 samtools variation 2481515 2481515 . . . alleles " C T"; frequencies " 0.668571428571429 0.331428571428571"; depth 175 ; known ; synonymous GL192395.1 samtools variation 2483981 2483981 . . . alleles " T G"; frequencies " 0.204081632653061 0.795918367346939"; depth 49 ; known ; N/A GL192395.1 samtools variation 2484646 2484646 . . . alleles " G A"; frequencies " 0.787234042553192 0.212765957446809"; depth 47 ; unknown ; N/A GL192395.1 samtools variation 2485239 2485239 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL192396.1 samtools variation 222781 222781 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192396.1 samtools variation 235726 235726 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192396.1 samtools variation 238650 238650 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; known ; N/A GL192396.1 samtools variation 247034 247034 . . . alleles " A C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192396.1 samtools variation 265966 265966 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192396.1 samtools variation 266093 266093 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL192396.1 samtools variation 266125 266125 . . . alleles " A G"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL192396.1 samtools variation 267440 267440 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; synonymous GL192396.1 samtools variation 267601 267601 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192396.1 samtools variation 308032 308032 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 25 ; known ; N/A GL192396.1 samtools variation 324492 324492 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192396.1 samtools variation 328732 328732 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL192396.1 samtools variation 329373 329373 . . . alleles " A C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192396.1 samtools variation 329549 329549 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192396.1 samtools variation 329552 329552 . . . alleles " C A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192396.1 samtools variation 330220 330220 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192396.1 samtools variation 330559 330559 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192396.1 samtools variation 331408 331408 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192396.1 samtools variation 331422 331422 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192396.1 samtools variation 333707 333707 . . . alleles " T A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192396.1 samtools variation 333733 333733 . . . alleles " T A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192396.1 samtools variation 333995 333995 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192396.1 samtools variation 334021 334021 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192396.1 samtools variation 375568 375568 . . . alleles " T C"; frequencies " 0.656410256410256 0.343589743589744"; depth 390 ; unknown ; non-synonymous GL192396.1 samtools variation 377012 377012 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192396.1 samtools variation 383732 383732 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192396.1 samtools variation 387170 387170 . . . alleles " C A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192396.1 samtools variation 392554 392554 . . . alleles " A G"; frequencies " 0.41304347826087 0.58695652173913"; depth 46 ; known ; N/A GL192396.1 samtools variation 395150 395150 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192396.1 samtools variation 413194 413194 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192396.1 samtools variation 420181 420181 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL192396.1 samtools variation 428881 428881 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192396.1 samtools variation 434230 434230 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 80 ; unknown ; N/A GL192396.1 samtools variation 434898 434898 . . . alleles " C G"; frequencies " 0.771428571428571 0.228571428571429"; depth 140 ; unknown ; N/A GL192396.1 samtools variation 434932 434932 . . . alleles " G A"; frequencies " 0.741496598639456 0.258503401360544"; depth 147 ; unknown ; N/A GL192396.1 samtools variation 435091 435091 . . . alleles " T G"; frequencies " 0.702127659574468 0.297872340425532"; depth 94 ; unknown ; N/A GL192396.1 samtools variation 435115 435115 . . . alleles " C T"; frequencies " 0.644444444444444 0.355555555555556"; depth 90 ; unknown ; N/A GL192396.1 samtools variation 438171 438171 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192396.1 samtools variation 438301 438301 . . . alleles " T G"; frequencies " 0.581818181818182 0.418181818181818"; depth 55 ; unknown ; N/A GL192396.1 samtools variation 438350 438350 . . . alleles " T C"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; unknown ; N/A GL192396.1 samtools variation 438437 438437 . . . alleles " A G"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; unknown ; N/A GL192396.1 samtools variation 438535 438535 . . . alleles " G A"; frequencies " 0.69804822043628 0.300803673938002"; depth 871 ; unknown ; non-synonymous GL192396.1 samtools variation 438719 438719 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192396.1 samtools variation 442366 442366 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192396.1 samtools variation 442403 442403 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192396.1 samtools variation 443056 443056 . . . alleles " T C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; known ; N/A GL192396.1 samtools variation 449159 449159 . . . alleles " C G"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192396.1 samtools variation 463084 463084 . . . alleles " T G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192396.1 samtools variation 467521 467521 . . . alleles " T G"; frequencies " 0.782608695652174 0.217391304347826"; depth 69 ; unknown ; N/A GL192396.1 samtools variation 470884 470884 . . . alleles " A T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192396.1 samtools variation 1748832 1748832 . . . alleles " A C"; frequencies " 0.513513513513513 0.486486486486487"; depth 37 ; unknown ; N/A GL192396.1 samtools variation 2016309 2016309 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 68 ; unknown ; N/A GL192396.1 samtools variation 2016401 2016401 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 48 ; unknown ; N/A GL192396.1 samtools variation 2016475 2016475 . . . alleles " C T"; frequencies " 0.573099415204678 0.426900584795322"; depth 171 ; unknown ; N/A GL192396.1 samtools variation 2016688 2016688 . . . alleles " A T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192396.1 samtools variation 2016871 2016871 . . . alleles " G T"; frequencies " 0.528301886792453 0.471698113207547"; depth 159 ; unknown ; N/A GL192396.1 samtools variation 2018769 2018769 . . . alleles " A G"; frequencies " 0.47 0.53"; depth 100 ; unknown ; N/A GL192396.1 samtools variation 2585035 2585035 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192396.1 samtools variation 2592316 2592316 . . . alleles " A G"; frequencies " 0.75973597359736 0.24026402640264"; depth 1515 ; unknown ; synonymous GL192396.1 samtools variation 2600984 2600984 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192396.1 samtools variation 2601082 2601082 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192396.1 samtools variation 2610469 2610469 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192396.1 samtools variation 2610550 2610550 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192396.1 samtools variation 2611300 2611300 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192396.1 samtools variation 2616237 2616237 . . . alleles " G A"; frequencies " 0.634920634920635 0.365079365079365"; depth 756 ; unknown ; synonymous GL192396.1 samtools variation 2621145 2621145 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192396.1 samtools variation 2622194 2622194 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL192396.1 samtools variation 2622608 2622608 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192396.1 samtools variation 2622697 2622697 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192396.1 samtools variation 2625516 2625516 . . . alleles " G A"; frequencies " 0.279661016949153 0.720338983050847"; depth 118 ; unknown ; N/A GL192396.1 samtools variation 2626515 2626515 . . . alleles " A G"; frequencies " 0.717391304347826 0.282608695652174"; depth 138 ; unknown ; N/A GL192396.1 samtools variation 2626528 2626528 . . . alleles " C T"; frequencies " 0.707317073170732 0.292682926829268"; depth 123 ; unknown ; N/A GL192398.1 samtools variation 32818 32818 . . . alleles " A G"; frequencies " 0.718181818181818 0.281818181818182"; depth 110 ; unknown ; N/A GL192398.1 samtools variation 34037 34037 . . . alleles " A G"; frequencies " 0.441860465116279 0.558139534883721"; depth 43 ; unknown ; N/A GL192398.1 samtools variation 77125 77125 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192398.1 samtools variation 77142 77142 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192398.1 samtools variation 78166 78166 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192398.1 samtools variation 80093 80093 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192398.1 samtools variation 80193 80193 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192398.1 samtools variation 80960 80960 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192398.1 samtools variation 82295 82295 . . . alleles " C A"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL192398.1 samtools variation 82902 82902 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 342 ; known ; N/A GL192398.1 samtools variation 99854 99854 . . . alleles " T A"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL192398.1 samtools variation 102756 102756 . . . alleles " G T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192398.1 samtools variation 102757 102757 . . . alleles " A T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192398.1 samtools variation 105546 105546 . . . alleles " C A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192398.1 samtools variation 105962 105962 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192398.1 samtools variation 105999 105999 . . . alleles " C T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL192398.1 samtools variation 116563 116563 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192398.1 samtools variation 137429 137429 . . . alleles " C A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192398.1 samtools variation 153019 153019 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192398.1 samtools variation 171842 171842 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192398.1 samtools variation 312812 312812 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; known ; non-synonymous GL192398.1 samtools variation 323518 323518 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; non-synonymous GL192398.1 samtools variation 327239 327239 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; non-synonymous GL192398.1 samtools variation 421759 421759 . . . alleles " A C"; frequencies " 0.353846153846154 0.646153846153846"; depth 65 ; unknown ; N/A GL192398.1 samtools variation 443095 443095 . . . alleles " A G"; frequencies " 0.275862068965517 0.724137931034483"; depth 87 ; unknown ; non-synonymous GL192398.1 samtools variation 587483 587483 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; unknown ; synonymous GL192398.1 samtools variation 593046 593046 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192398.1 samtools variation 594945 594945 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192398.1 samtools variation 624651 624651 . . . alleles " T C"; frequencies " 0.398148148148148 0.601851851851852"; depth 108 ; unknown ; non-synonymous GL192398.1 samtools variation 635356 635356 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192398.1 samtools variation 710356 710356 . . . alleles " A C"; frequencies " 0.306930693069307 0.693069306930693"; depth 101 ; unknown ; N/A GL192398.1 samtools variation 905989 905989 . . . alleles " C T"; frequencies " 0.723684210526316 0.276315789473684"; depth 76 ; unknown ; N/A GL192398.1 samtools variation 906158 906158 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192398.1 samtools variation 906171 906171 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192398.1 samtools variation 911382 911382 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 51 ; unknown ; non-synonymous GL192398.1 samtools variation 911854 911854 . . . alleles " A G"; frequencies " 0.210526315789474 0.789473684210526"; depth 38 ; unknown ; synonymous GL192398.1 samtools variation 1048096 1048096 . . . alleles " G A"; frequencies " 0.61021897810219 0.38978102189781"; depth 685 ; unknown ; synonymous GL192398.1 samtools variation 1053262 1053262 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192398.1 samtools variation 1055007 1055007 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192398.1 samtools variation 1055696 1055696 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192398.1 samtools variation 1057668 1057668 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 42 ; unknown ; N/A GL192398.1 samtools variation 1203295 1203295 . . . alleles " A T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192398.1 samtools variation 1206299 1206299 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 105 ; unknown ; synonymous GL192398.1 samtools variation 1231114 1231114 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192398.1 samtools variation 1242773 1242773 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192398.1 samtools variation 1247761 1247761 . . . alleles " C G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192398.1 samtools variation 1343222 1343222 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192398.1 samtools variation 1420621 1420621 . . . alleles " T C"; frequencies " 0.798913043478261 0.201086956521739"; depth 184 ; unknown ; N/A GL192398.1 samtools variation 1420734 1420734 . . . alleles " A G"; frequencies " 0.393939393939394 0.606060606060606"; depth 99 ; unknown ; N/A GL192398.1 samtools variation 1523141 1523141 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192398.1 samtools variation 1568131 1568131 . . . alleles " A T"; frequencies " 0.230769230769231 0.769230769230769"; depth 26 ; known ; N/A GL192398.1 samtools variation 1568696 1568696 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192398.1 samtools variation 1569303 1569303 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192398.1 samtools variation 1570650 1570650 . . . alleles " A T"; frequencies " 0.658536585365854 0.341463414634146"; depth 41 ; known ; N/A GL192398.1 samtools variation 1571786 1571786 . . . alleles " T C"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; known ; N/A GL192398.1 samtools variation 1576549 1576549 . . . alleles " G A"; frequencies " 0.622950819672131 0.377049180327869"; depth 61 ; known ; synonymous GL192398.1 samtools variation 1581379 1581379 . . . alleles " T C"; frequencies " 0.289156626506024 0.710843373493976"; depth 83 ; known ; synonymous GL192398.1 samtools variation 1611696 1611696 . . . alleles " G A"; frequencies " 0.762135922330097 0.237864077669903"; depth 206 ; known ; N/A GL192398.1 samtools variation 1613911 1613911 . . . alleles " A G"; frequencies " 0.342391304347826 0.657608695652174"; depth 184 ; known ; N/A GL192398.1 samtools variation 1858668 1858668 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192398.1 samtools variation 1864712 1864712 . . . alleles " C T"; frequencies " 0.73224043715847 0.26775956284153"; depth 183 ; unknown ; N/A GL192398.1 samtools variation 1877660 1877660 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192398.1 samtools variation 1877760 1877760 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192398.1 samtools variation 1933868 1933868 . . . alleles " C T"; frequencies " 0.654135338345865 0.345864661654135"; depth 133 ; unknown ; N/A GL192398.1 samtools variation 2121833 2121833 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192398.1 samtools variation 2268063 2268063 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192398.1 samtools variation 2289833 2289833 . . . alleles " T C"; frequencies " 0.423076923076923 0.576923076923077"; depth 78 ; known ; N/A GL192398.1 samtools variation 2291540 2291540 . . . alleles " A G"; frequencies " 0.54954954954955 0.45045045045045"; depth 111 ; known ; N/A GL192398.1 samtools variation 2292432 2292432 . . . alleles " G A"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL192398.1 samtools variation 2293611 2293611 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 70 ; unknown ; N/A GL192398.1 samtools variation 2314753 2314753 . . . alleles " G A"; frequencies " 0.651162790697674 0.348837209302326"; depth 43 ; unknown ; N/A GL192398.1 samtools variation 2520315 2520315 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192398.1 samtools variation 2522642 2522642 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192398.1 samtools variation 2523313 2523313 . . . alleles " T G"; frequencies " 0.375 0.625"; depth 32 ; known ; N/A GL192398.1 samtools variation 2525246 2525246 . . . alleles " A G"; frequencies " 0.557894736842105 0.442105263157895"; depth 190 ; known ; N/A GL192398.1 samtools variation 2999144 2999144 . . . alleles " G A"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; known ; N/A GL192398.1 samtools variation 3004450 3004450 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192398.1 samtools variation 3271166 3271166 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; non-synonymous GL192398.1 samtools variation 3272036 3272036 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192398.1 samtools variation 3272704 3272704 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192398.1 samtools variation 3273972 3273972 . . . alleles " A G"; frequencies " 0.492957746478873 0.507042253521127"; depth 71 ; known ; N/A GL192398.1 samtools variation 3273987 3273987 . . . alleles " G A"; frequencies " 0.753623188405797 0.246376811594203"; depth 69 ; unknown ; N/A GL192398.1 samtools variation 3273998 3273998 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 63 ; unknown ; N/A GL192398.1 samtools variation 3274123 3274123 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192398.1 samtools variation 3274164 3274164 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192399.1 samtools variation 8015 8015 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192399.1 samtools variation 8063 8063 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192399.1 samtools variation 8446 8446 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192399.1 samtools variation 8449 8449 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192399.1 samtools variation 8556 8556 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192399.1 samtools variation 8927 8927 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192399.1 samtools variation 9057 9057 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192399.1 samtools variation 9376 9376 . . . alleles " T A"; frequencies " 0.516014234875445 0.483985765124555"; depth 281 ; unknown ; N/A GL192399.1 samtools variation 9670 9670 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192399.1 samtools variation 10640 10640 . . . alleles " G A"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; unknown ; N/A GL192399.1 samtools variation 10745 10745 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192399.1 samtools variation 11079 11079 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192399.1 samtools variation 11169 11169 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192399.1 samtools variation 14420 14420 . . . alleles " G A"; frequencies " 0.520912547528517 0.479087452471483"; depth 263 ; unknown ; N/A GL192399.1 samtools variation 24888 24888 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192399.1 samtools variation 24952 24952 . . . alleles " A G"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192399.1 samtools variation 25074 25074 . . . alleles " G A"; frequencies " 0.268292682926829 0.731707317073171"; depth 41 ; known ; N/A GL192399.1 samtools variation 25098 25098 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 48 ; known ; N/A GL192399.1 samtools variation 27265 27265 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192399.1 samtools variation 27966 27966 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192399.1 samtools variation 34897 34897 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192399.1 samtools variation 40279 40279 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192399.1 samtools variation 40477 40477 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192399.1 samtools variation 47895 47895 . . . alleles " G C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192399.1 samtools variation 55687 55687 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192399.1 samtools variation 58340 58340 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192399.1 samtools variation 60515 60515 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192399.1 samtools variation 66549 66549 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192399.1 samtools variation 77837 77837 . . . alleles " G A"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL192399.1 samtools variation 77883 77883 . . . alleles " C T"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL192399.1 samtools variation 78180 78180 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; unknown ; N/A GL192399.1 samtools variation 78650 78650 . . . alleles " T G"; frequencies " 0.342857142857143 0.657142857142857"; depth 35 ; unknown ; N/A GL192399.1 samtools variation 83759 83759 . . . alleles " G C"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; unknown ; N/A GL192399.1 samtools variation 83875 83875 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL192399.1 samtools variation 83939 83939 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192399.1 samtools variation 168764 168764 . . . alleles " C T"; frequencies " 0.21875 0.78125"; depth 32 ; unknown ; N/A GL192399.1 samtools variation 169714 169714 . . . alleles " A G"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192399.1 samtools variation 283740 283740 . . . alleles " A G"; frequencies " 0.240740740740741 0.759259259259259"; depth 54 ; known ; synonymous GL192399.1 samtools variation 285123 285123 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 16 ; known ; synonymous GL192399.1 samtools variation 318723 318723 . . . alleles " G A"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; unknown ; N/A GL192399.1 samtools variation 446968 446968 . . . alleles " C T"; frequencies " 0.798387096774194 0.201612903225806"; depth 124 ; unknown ; N/A GL192399.1 samtools variation 447320 447320 . . . alleles " T A"; frequencies " 0.790983606557377 0.209016393442623"; depth 244 ; unknown ; N/A GL192399.1 samtools variation 448090 448090 . . . alleles " C T"; frequencies " 0.341708542713568 0.658291457286432"; depth 398 ; known ; N/A GL192399.1 samtools variation 448347 448347 . . . alleles " G A"; frequencies " 0.781659388646288 0.218340611353712"; depth 229 ; unknown ; N/A GL192399.1 samtools variation 448726 448726 . . . alleles " C T"; frequencies " 0.799196787148594 0.200803212851406"; depth 249 ; unknown ; N/A GL192399.1 samtools variation 449237 449237 . . . alleles " C T"; frequencies " 0.605263157894737 0.394736842105263"; depth 190 ; unknown ; N/A GL192399.1 samtools variation 449524 449524 . . . alleles " T C"; frequencies " 0.760416666666667 0.239583333333333"; depth 96 ; unknown ; N/A GL192399.1 samtools variation 459228 459228 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192399.1 samtools variation 572253 572253 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192399.1 samtools variation 572945 572945 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192399.1 samtools variation 573031 573031 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192399.1 samtools variation 581440 581440 . . . alleles " C A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192399.1 samtools variation 581450 581450 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192399.1 samtools variation 597842 597842 . . . alleles " A C"; frequencies " 0.292682926829268 0.707317073170732"; depth 41 ; known ; N/A GL192399.1 samtools variation 600658 600658 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192399.1 samtools variation 600694 600694 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192399.1 samtools variation 661407 661407 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192399.1 samtools variation 676037 676037 . . . alleles " T G"; frequencies " 0.768292682926829 0.231707317073171"; depth 82 ; unknown ; N/A GL192399.1 samtools variation 961327 961327 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192399.1 samtools variation 1171717 1171717 . . . alleles " G A"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL192399.1 samtools variation 1172071 1172071 . . . alleles " G A"; frequencies " 0.396694214876033 0.603305785123967"; depth 121 ; known ; synonymous GL192399.1 samtools variation 1182317 1182317 . . . alleles " T G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192399.1 samtools variation 1182426 1182426 . . . alleles " C A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192399.1 samtools variation 1183951 1183951 . . . alleles " A G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; known ; N/A GL192399.1 samtools variation 1191366 1191366 . . . alleles " T G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192399.1 samtools variation 1198078 1198078 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 46 ; known ; N/A GL192399.1 samtools variation 1198463 1198463 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192399.1 samtools variation 1199542 1199542 . . . alleles " A G"; frequencies " 0.565656565656566 0.434343434343434"; depth 99 ; known ; N/A GL192399.1 samtools variation 1201441 1201441 . . . alleles " T G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192399.1 samtools variation 1203521 1203521 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192399.1 samtools variation 1203819 1203819 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192399.1 samtools variation 1258287 1258287 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192399.1 samtools variation 2342253 2342253 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192399.1 samtools variation 2355146 2355146 . . . alleles " T G"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; N/A GL192399.1 samtools variation 2355196 2355196 . . . alleles " C A"; frequencies " 0.739130434782609 0.260869565217391"; depth 69 ; unknown ; N/A GL192399.1 samtools variation 2355278 2355278 . . . alleles " G A"; frequencies " 0.757575757575758 0.242424242424242"; depth 66 ; unknown ; N/A GL192399.1 samtools variation 2355525 2355525 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 104 ; unknown ; N/A GL192399.1 samtools variation 2355634 2355634 . . . alleles " T C"; frequencies " 0.76510067114094 0.23489932885906"; depth 149 ; unknown ; N/A GL192399.1 samtools variation 2356310 2356310 . . . alleles " T A"; frequencies " 0.615384615384615 0.384615384615385"; depth 39 ; unknown ; N/A GL192399.1 samtools variation 2356410 2356410 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL192399.1 samtools variation 2356416 2356416 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 40 ; unknown ; N/A GL192399.1 samtools variation 2356433 2356433 . . . alleles " A C"; frequencies " 0.702127659574468 0.297872340425532"; depth 47 ; unknown ; N/A GL192399.1 samtools variation 2396590 2396590 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 96 ; unknown ; synonymous GL192399.1 samtools variation 2510616 2510616 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192399.1 samtools variation 2776357 2776357 . . . alleles " C T"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; unknown ; non-synonymous GL192399.1 samtools variation 2823163 2823163 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 25 ; known ; synonymous GL192399.1 samtools variation 2843738 2843738 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192399.1 samtools variation 2844005 2844005 . . . alleles " C G"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; known ; N/A GL192399.1 samtools variation 2844388 2844388 . . . alleles " T C"; frequencies " 0.783018867924528 0.216981132075472"; depth 106 ; known ; N/A GL192399.1 samtools variation 2844668 2844668 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192399.1 samtools variation 2920200 2920200 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 40 ; unknown ; N/A GL192399.1 samtools variation 2920550 2920550 . . . alleles " G C"; frequencies " 0.345864661654135 0.654135338345865"; depth 133 ; unknown ; N/A GL192399.1 samtools variation 2920702 2920702 . . . alleles " A G"; frequencies " 0.257731958762887 0.742268041237113"; depth 97 ; unknown ; N/A GL192399.1 samtools variation 2921137 2921137 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 40 ; unknown ; N/A GL192399.1 samtools variation 2924587 2924587 . . . alleles " A T"; frequencies " 0.403061224489796 0.596938775510204"; depth 196 ; unknown ; N/A GL192399.1 samtools variation 2925285 2925285 . . . alleles " C T"; frequencies " 0.418181818181818 0.581818181818182"; depth 55 ; unknown ; N/A GL192399.1 samtools variation 2925559 2925559 . . . alleles " C G"; frequencies " 0.590909090909091 0.409090909090909"; depth 88 ; known ; N/A GL192399.1 samtools variation 2926298 2926298 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 75 ; unknown ; N/A GL192399.1 samtools variation 2927986 2927986 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 44 ; unknown ; N/A GL192399.1 samtools variation 2928425 2928425 . . . alleles " A G"; frequencies " 0.290322580645161 0.709677419354839"; depth 62 ; unknown ; N/A GL192400.1 samtools variation 5929 5929 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192400.1 samtools variation 9437 9437 . . . alleles " A G"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; unknown ; N/A GL192400.1 samtools variation 39640 39640 . . . alleles " C T"; frequencies " 0.775956284153005 0.224043715846995"; depth 183 ; unknown ; synonymous GL192400.1 samtools variation 39659 39659 . . . alleles " A C"; frequencies " 0.706586826347305 0.293413173652695"; depth 167 ; unknown ; non-synonymous GL192400.1 samtools variation 40902 40902 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192400.1 samtools variation 40994 40994 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192400.1 samtools variation 42501 42501 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192400.1 samtools variation 46730 46730 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192400.1 samtools variation 46863 46863 . . . alleles " A G"; frequencies " 0.787234042553192 0.212765957446809"; depth 47 ; unknown ; N/A GL192400.1 samtools variation 46864 46864 . . . alleles " C T"; frequencies " 0.765957446808511 0.234042553191489"; depth 47 ; known ; N/A GL192400.1 samtools variation 48092 48092 . . . alleles " T A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192400.1 samtools variation 50109 50109 . . . alleles " A G"; frequencies " 0.641509433962264 0.358490566037736"; depth 53 ; unknown ; N/A GL192400.1 samtools variation 50454 50454 . . . alleles " G T"; frequencies " 0.744186046511628 0.255813953488372"; depth 43 ; unknown ; N/A GL192400.1 samtools variation 50650 50650 . . . alleles " A G"; frequencies " 0.75886524822695 0.24113475177305"; depth 141 ; unknown ; synonymous GL192400.1 samtools variation 50665 50665 . . . alleles " C T"; frequencies " 0.759398496240602 0.240601503759398"; depth 133 ; unknown ; synonymous GL192400.1 samtools variation 64075 64075 . . . alleles " A G"; frequencies " 0.502183406113537 0.497816593886463"; depth 229 ; known ; synonymous GL192400.1 samtools variation 85760 85760 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192400.1 samtools variation 107051 107051 . . . alleles " G C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192400.1 samtools variation 121072 121072 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192400.1 samtools variation 121073 121073 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192400.1 samtools variation 121892 121892 . . . alleles " T C"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; known ; N/A GL192400.1 samtools variation 137932 137932 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192400.1 samtools variation 162349 162349 . . . alleles " G A"; frequencies " 0.353658536585366 0.646341463414634"; depth 82 ; known ; synonymous GL192400.1 samtools variation 203356 203356 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192400.1 samtools variation 247593 247593 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192400.1 samtools variation 248173 248173 . . . alleles " G T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192400.1 samtools variation 254490 254490 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192400.1 samtools variation 322129 322129 . . . alleles " A T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; N/A GL192400.1 samtools variation 327199 327199 . . . alleles " T G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL192400.1 samtools variation 1013086 1013086 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; unknown ; N/A GL192400.1 samtools variation 1014686 1014686 . . . alleles " C T"; frequencies " 0.673913043478261 0.326086956521739"; depth 46 ; known ; non-synonymous GL192400.1 samtools variation 1026032 1026032 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; synonymous GL192400.1 samtools variation 1090702 1090702 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 10 ; known ; non-synonymous GL192400.1 samtools variation 1190622 1190622 . . . alleles " C T"; frequencies " 0.788571428571429 0.211428571428571"; depth 175 ; known ; synonymous GL192400.1 samtools variation 1375746 1375746 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192400.1 samtools variation 1375854 1375854 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL192400.1 samtools variation 1380643 1380643 . . . alleles " A G"; frequencies " 0.216216216216216 0.783783783783784"; depth 74 ; unknown ; N/A GL192400.1 samtools variation 1396088 1396088 . . . alleles " A G"; frequencies " 0.64 0.36"; depth 25 ; unknown ; non-synonymous GL192400.1 samtools variation 1511692 1511692 . . . alleles " C T"; frequencies " 0.793798449612403 0.206201550387597"; depth 2580 ; unknown ; N/A GL192400.1 samtools variation 1512095 1512095 . . . alleles " T C"; frequencies " 0.738461538461539 0.261538461538462"; depth 65 ; unknown ; N/A GL192400.1 samtools variation 1512447 1512447 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 78 ; unknown ; N/A GL192400.1 samtools variation 1512480 1512480 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 84 ; unknown ; N/A GL192400.1 samtools variation 1514666 1514666 . . . alleles " C T"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL192400.1 samtools variation 1514783 1514783 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL192400.1 samtools variation 1514791 1514791 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; unknown ; N/A GL192400.1 samtools variation 1518433 1518433 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192400.1 samtools variation 1520659 1520659 . . . alleles " G T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL192400.1 samtools variation 1522643 1522643 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; N/A GL192400.1 samtools variation 1522696 1522696 . . . alleles " A G"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL192400.1 samtools variation 1522816 1522816 . . . alleles " C T"; frequencies " 0.586666666666667 0.413333333333333"; depth 75 ; known ; N/A GL192400.1 samtools variation 1522934 1522934 . . . alleles " T C"; frequencies " 0.578125 0.421875"; depth 64 ; known ; N/A GL192400.1 samtools variation 1522947 1522947 . . . alleles " A C"; frequencies " 0.519230769230769 0.480769230769231"; depth 52 ; known ; N/A GL192400.1 samtools variation 1523016 1523016 . . . alleles " C T"; frequencies " 0.595238095238095 0.404761904761905"; depth 42 ; known ; N/A GL192400.1 samtools variation 1523139 1523139 . . . alleles " C T"; frequencies " 0.716216216216216 0.283783783783784"; depth 74 ; unknown ; N/A GL192400.1 samtools variation 1523818 1523818 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; known ; N/A GL192400.1 samtools variation 1524220 1524220 . . . alleles " A G"; frequencies " 0.528301886792453 0.471698113207547"; depth 53 ; known ; N/A GL192400.1 samtools variation 1524355 1524355 . . . alleles " C T"; frequencies " 0.56 0.44"; depth 25 ; known ; N/A GL192400.1 samtools variation 1524396 1524396 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192400.1 samtools variation 1524408 1524408 . . . alleles " C A"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192400.1 samtools variation 1524614 1524614 . . . alleles " A G"; frequencies " 0.46031746031746 0.53968253968254"; depth 63 ; known ; N/A GL192400.1 samtools variation 1524733 1524733 . . . alleles " C T"; frequencies " 0.567567567567568 0.432432432432432"; depth 111 ; known ; N/A GL192400.1 samtools variation 1525121 1525121 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 48 ; known ; N/A GL192400.1 samtools variation 1525389 1525389 . . . alleles " A G"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192400.1 samtools variation 1527078 1527078 . . . alleles " T C"; frequencies " 0.326923076923077 0.673076923076923"; depth 52 ; known ; N/A GL192400.1 samtools variation 1527247 1527247 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 58 ; unknown ; N/A GL192400.1 samtools variation 1527786 1527786 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL192400.1 samtools variation 1588621 1588621 . . . alleles " A G"; frequencies " 0.697247706422018 0.302752293577982"; depth 109 ; unknown ; synonymous GL192400.1 samtools variation 1610746 1610746 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; non-synonymous GL192400.1 samtools variation 1957750 1957750 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192400.1 samtools variation 2263984 2263984 . . . alleles " C A"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; N/A GL192400.1 samtools variation 2315512 2315512 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192400.1 samtools variation 2316049 2316049 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 42 ; known ; N/A GL192400.1 samtools variation 2316321 2316321 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192400.1 samtools variation 2326270 2326270 . . . alleles " C T"; frequencies " 0.388059701492537 0.611940298507463"; depth 335 ; known ; synonymous GL192400.1 samtools variation 2331326 2331326 . . . alleles " C T"; frequencies " 0.492163009404389 0.507836990595611"; depth 638 ; known ; N/A GL192400.1 samtools variation 2333317 2333317 . . . alleles " C T"; frequencies " 0.701834862385321 0.298165137614679"; depth 218 ; unknown ; N/A GL192400.1 samtools variation 2334116 2334116 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192400.1 samtools variation 2496310 2496310 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192400.1 samtools variation 2520918 2520918 . . . alleles " T C"; frequencies " 0.205479452054795 0.794520547945205"; depth 73 ; unknown ; N/A GL192400.1 samtools variation 2521397 2521397 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL192400.1 samtools variation 2522187 2522187 . . . alleles " C T"; frequencies " 0.219512195121951 0.780487804878049"; depth 82 ; unknown ; N/A GL192400.1 samtools variation 3188398 3188398 . . . alleles " T G"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL192401.1 samtools variation 479298 479298 . . . alleles " G A"; frequencies " 0.712837837837838 0.287162162162162"; depth 296 ; unknown ; N/A GL192401.1 samtools variation 479356 479356 . . . alleles " T C"; frequencies " 0.534615384615385 0.465384615384615"; depth 260 ; unknown ; N/A GL192401.1 samtools variation 503625 503625 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192401.1 samtools variation 503638 503638 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192401.1 samtools variation 514034 514034 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192401.1 samtools variation 514520 514520 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192401.1 samtools variation 514728 514728 . . . alleles " A T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192401.1 samtools variation 523106 523106 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192401.1 samtools variation 602157 602157 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; non-synonymous GL192401.1 samtools variation 607372 607372 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192401.1 samtools variation 607758 607758 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192401.1 samtools variation 608857 608857 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192401.1 samtools variation 725922 725922 . . . alleles " G A"; frequencies " 0.712574850299401 0.287425149700599"; depth 167 ; unknown ; synonymous GL192401.1 samtools variation 727309 727309 . . . alleles " C G"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192401.1 samtools variation 727312 727312 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192401.1 samtools variation 727416 727416 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192401.1 samtools variation 727501 727501 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192401.1 samtools variation 727781 727781 . . . alleles " T G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192401.1 samtools variation 728044 728044 . . . alleles " T C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192401.1 samtools variation 728493 728493 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL192401.1 samtools variation 729809 729809 . . . alleles " A C"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL192401.1 samtools variation 730464 730464 . . . alleles " T C"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192401.1 samtools variation 731217 731217 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192401.1 samtools variation 776665 776665 . . . alleles " A G"; frequencies " 0.472222222222222 0.527777777777778"; depth 180 ; unknown ; N/A GL192401.1 samtools variation 776990 776990 . . . alleles " G T"; frequencies " 0.513725490196078 0.486274509803922"; depth 255 ; unknown ; N/A GL192401.1 samtools variation 777003 777003 . . . alleles " C T"; frequencies " 0.567567567567568 0.432432432432432"; depth 185 ; unknown ; N/A GL192401.1 samtools variation 778819 778819 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192401.1 samtools variation 779649 779649 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 26 ; unknown ; synonymous GL192401.1 samtools variation 786499 786499 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192401.1 samtools variation 786606 786606 . . . alleles " T C"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192401.1 samtools variation 786759 786759 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192401.1 samtools variation 786820 786820 . . . alleles " T G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192401.1 samtools variation 787280 787280 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192401.1 samtools variation 846365 846365 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; synonymous GL192401.1 samtools variation 1217137 1217137 . . . alleles " G A"; frequencies " 0.741784037558685 0.258215962441315"; depth 639 ; unknown ; synonymous GL192401.1 samtools variation 1223668 1223668 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192401.1 samtools variation 1259937 1259937 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192401.1 samtools variation 1261235 1261235 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192401.1 samtools variation 1263003 1263003 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192401.1 samtools variation 1264796 1264796 . . . alleles " G A"; frequencies " 0.597701149425287 0.402298850574713"; depth 87 ; unknown ; synonymous GL192401.1 samtools variation 1283967 1283967 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192401.1 samtools variation 1342729 1342729 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192401.1 samtools variation 1527793 1527793 . . . alleles " C A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192401.1 samtools variation 1528800 1528800 . . . alleles " A T"; frequencies " 0.623853211009174 0.376146788990826"; depth 109 ; unknown ; N/A GL192401.1 samtools variation 1528918 1528918 . . . alleles " A G"; frequencies " 0.659340659340659 0.340659340659341"; depth 91 ; unknown ; synonymous GL192401.1 samtools variation 1658757 1658757 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192401.1 samtools variation 1661138 1661138 . . . alleles " A G"; frequencies " 0.724137931034483 0.275862068965517"; depth 58 ; unknown ; N/A GL192401.1 samtools variation 1670263 1670263 . . . alleles " T C"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL192401.1 samtools variation 1744591 1744591 . . . alleles " G A"; frequencies " 0.739644970414201 0.260355029585799"; depth 169 ; unknown ; N/A GL192401.1 samtools variation 1836887 1836887 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 57 ; unknown ; N/A GL192401.1 samtools variation 1838322 1838322 . . . alleles " T C"; frequencies " 0.610204081632653 0.389795918367347"; depth 490 ; unknown ; non-synonymous GL192401.1 samtools variation 1838806 1838806 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192401.1 samtools variation 1839991 1839991 . . . alleles " C T"; frequencies " 0.729981378026071 0.270018621973929"; depth 537 ; unknown ; synonymous GL192401.1 samtools variation 1849299 1849299 . . . alleles " T C"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL192402.1 samtools variation 1197520 1197520 . . . alleles " A G"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192402.1 samtools variation 1209597 1209597 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192402.1 samtools variation 1284882 1284882 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192402.1 samtools variation 1289203 1289203 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192402.1 samtools variation 1292533 1292533 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192402.1 samtools variation 2030785 2030785 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192402.1 samtools variation 2052207 2052207 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192402.1 samtools variation 2107135 2107135 . . . alleles " A C"; frequencies " 0.39047619047619 0.60952380952381"; depth 105 ; unknown ; N/A GL192402.1 samtools variation 2108474 2108474 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192402.1 samtools variation 2109912 2109912 . . . alleles " C A"; frequencies " 0.721739130434783 0.278260869565217"; depth 115 ; unknown ; N/A GL192402.1 samtools variation 2110667 2110667 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 75 ; unknown ; N/A GL192402.1 samtools variation 2113838 2113838 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; unknown ; N/A GL192402.1 samtools variation 2115004 2115004 . . . alleles " G T"; frequencies " 0.766497461928934 0.233502538071066"; depth 197 ; unknown ; N/A GL192402.1 samtools variation 2115753 2115753 . . . alleles " T C"; frequencies " 0.721311475409836 0.278688524590164"; depth 183 ; unknown ; N/A GL192402.1 samtools variation 2119428 2119428 . . . alleles " T G"; frequencies " 0.59478672985782 0.40521327014218"; depth 422 ; unknown ; N/A GL192402.1 samtools variation 2120113 2120113 . . . alleles " C T"; frequencies " 0.429245283018868 0.570754716981132"; depth 424 ; unknown ; N/A GL192402.1 samtools variation 2120116 2120116 . . . alleles " G T"; frequencies " 0.427553444180523 0.572446555819477"; depth 421 ; unknown ; N/A GL192402.1 samtools variation 2139570 2139570 . . . alleles " A T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192402.1 samtools variation 2147900 2147900 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192402.1 samtools variation 2164319 2164319 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192402.1 samtools variation 2170333 2170333 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192402.1 samtools variation 2170344 2170344 . . . alleles " T G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192402.1 samtools variation 2198637 2198637 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192402.1 samtools variation 2202276 2202276 . . . alleles " C A"; frequencies " 0.718562874251497 0.281437125748503"; depth 167 ; unknown ; N/A GL192402.1 samtools variation 2202277 2202277 . . . alleles " C G"; frequencies " 0.732954545454545 0.267045454545455"; depth 176 ; unknown ; N/A GL192402.1 samtools variation 2203923 2203923 . . . alleles " G A"; frequencies " 0.65625 0.34375"; depth 160 ; known ; N/A GL192402.1 samtools variation 2204178 2204178 . . . alleles " C T"; frequencies " 0.771217712177122 0.228782287822878"; depth 271 ; known ; N/A GL192402.1 samtools variation 2204774 2204774 . . . alleles " A G"; frequencies " 0.642718446601942 0.357281553398058"; depth 515 ; known ; N/A GL192402.1 samtools variation 2205588 2205588 . . . alleles " G A"; frequencies " 0.718849840255591 0.281150159744409"; depth 313 ; known ; N/A GL192402.1 samtools variation 2206022 2206022 . . . alleles " G A"; frequencies " 0.705479452054795 0.294520547945205"; depth 146 ; known ; N/A GL192402.1 samtools variation 2206711 2206711 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 594 ; known ; N/A GL192402.1 samtools variation 2207365 2207365 . . . alleles " A C"; frequencies " 0.22265625 0.77734375"; depth 256 ; known ; N/A GL192402.1 samtools variation 2208321 2208321 . . . alleles " G A"; frequencies " 0.679372197309417 0.320627802690583"; depth 446 ; known ; N/A GL192402.1 samtools variation 2208479 2208479 . . . alleles " T C"; frequencies " 0.667721518987342 0.332278481012658"; depth 316 ; unknown ; N/A GL192402.1 samtools variation 2208480 2208480 . . . alleles " G A"; frequencies " 0.679127725856698 0.320872274143302"; depth 321 ; unknown ; N/A GL192402.1 samtools variation 2210506 2210506 . . . alleles " C T"; frequencies " 0.722972972972973 0.277027027027027"; depth 148 ; unknown ; N/A GL192402.1 samtools variation 2213376 2213376 . . . alleles " G A"; frequencies " 0.724137931034483 0.275862068965517"; depth 58 ; known ; N/A GL192402.1 samtools variation 2217667 2217667 . . . alleles " T C"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; N/A GL192402.1 samtools variation 2495260 2495260 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL192402.1 samtools variation 2495306 2495306 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192402.1 samtools variation 2495586 2495586 . . . alleles " G C"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL192402.1 samtools variation 2505357 2505357 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; synonymous GL192402.1 samtools variation 2830161 2830161 . . . alleles " C T"; frequencies " 0.439024390243902 0.560975609756098"; depth 41 ; unknown ; N/A GL192402.1 samtools variation 2831360 2831360 . . . alleles " A C"; frequencies " 0.405172413793103 0.594827586206897"; depth 116 ; unknown ; N/A GL192403.1 samtools variation 1515972 1515972 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192403.1 samtools variation 1601536 1601536 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 24 ; unknown ; synonymous GL192403.1 samtools variation 1661822 1661822 . . . alleles " G A"; frequencies " 0.65625 0.34375"; depth 96 ; unknown ; synonymous GL192403.1 samtools variation 1667400 1667400 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192403.1 samtools variation 1668969 1668969 . . . alleles " C T"; frequencies " 0.452380952380952 0.547619047619048"; depth 42 ; unknown ; N/A GL192403.1 samtools variation 1675325 1675325 . . . alleles " A C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192403.1 samtools variation 1675398 1675398 . . . alleles " G A"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL192403.1 samtools variation 1676441 1676441 . . . alleles " A T"; frequencies " 0.8 0.2"; depth 30 ; known ; N/A GL192403.1 samtools variation 1676684 1676684 . . . alleles " G T"; frequencies " 0.621301775147929 0.378698224852071"; depth 169 ; unknown ; N/A GL192403.1 samtools variation 1676811 1676811 . . . alleles " T A"; frequencies " 0.798816568047337 0.201183431952663"; depth 169 ; unknown ; N/A GL192403.1 samtools variation 1901831 1901831 . . . alleles " T A"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL192403.1 samtools variation 1906337 1906337 . . . alleles " C T"; frequencies " 0.775 0.225"; depth 80 ; unknown ; N/A GL192403.1 samtools variation 1908100 1908100 . . . alleles " G A"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; unknown ; N/A GL192403.1 samtools variation 2033365 2033365 . . . alleles " T C"; frequencies " 0.408450704225352 0.591549295774648"; depth 71 ; unknown ; non-synonymous GL192403.1 samtools variation 2040341 2040341 . . . alleles " A G"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; synonymous GL192403.1 samtools variation 2098175 2098175 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; synonymous GL192403.1 samtools variation 2099385 2099385 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; synonymous GL192403.1 samtools variation 2104640 2104640 . . . alleles " T G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; synonymous GL192403.1 samtools variation 2132878 2132878 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192403.1 samtools variation 2136300 2136300 . . . alleles " T G"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL192403.1 samtools variation 2136803 2136803 . . . alleles " G T"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192403.1 samtools variation 2136832 2136832 . . . alleles " C A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192403.1 samtools variation 2137561 2137561 . . . alleles " A C"; frequencies " 0.653846153846154 0.346153846153846"; depth 182 ; unknown ; N/A GL192403.1 samtools variation 2139094 2139094 . . . alleles " T C"; frequencies " 0.535087719298246 0.464912280701754"; depth 114 ; unknown ; N/A GL192403.1 samtools variation 2140905 2140905 . . . alleles " C G"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192403.1 samtools variation 2142270 2142270 . . . alleles " C T"; frequencies " 0.590909090909091 0.409090909090909"; depth 44 ; unknown ; non-synonymous GL192403.1 samtools variation 2148651 2148651 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192403.1 samtools variation 2162708 2162708 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192403.1 samtools variation 2213700 2213700 . . . alleles " G A"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; known ; non-synonymous GL192403.1 samtools variation 2223015 2223015 . . . alleles " C G"; frequencies " 0.564102564102564 0.435897435897436"; depth 39 ; unknown ; non-synonymous GL192403.1 samtools variation 2223484 2223484 . . . alleles " A G"; frequencies " 0.60377358490566 0.39622641509434"; depth 53 ; unknown ; synonymous GL192403.1 samtools variation 2225293 2225293 . . . alleles " T C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192403.1 samtools variation 2225421 2225421 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192403.1 samtools variation 2225576 2225576 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192403.1 samtools variation 2225748 2225748 . . . alleles " T C"; frequencies " 0.725806451612903 0.274193548387097"; depth 62 ; unknown ; synonymous GL192403.1 samtools variation 2241494 2241494 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192403.1 samtools variation 2247444 2247444 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192403.1 samtools variation 2247464 2247464 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192403.1 samtools variation 2252860 2252860 . . . alleles " A C"; frequencies " 0.681818181818182 0.318181818181818"; depth 44 ; unknown ; synonymous GL192403.1 samtools variation 2252902 2252902 . . . alleles " T C"; frequencies " 0.711538461538462 0.288461538461538"; depth 52 ; unknown ; synonymous GL192403.1 samtools variation 2252908 2252908 . . . alleles " A G"; frequencies " 0.725490196078431 0.274509803921569"; depth 51 ; unknown ; synonymous GL192403.1 samtools variation 2253143 2253143 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192403.1 samtools variation 2254119 2254119 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; synonymous GL192403.1 samtools variation 2254752 2254752 . . . alleles " A G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; non-synonymous GL192403.1 samtools variation 2254801 2254801 . . . alleles " G A"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; synonymous GL192403.1 samtools variation 2255007 2255007 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192403.1 samtools variation 2255179 2255179 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192403.1 samtools variation 2256806 2256806 . . . alleles " T C"; frequencies " 0.649006622516556 0.350993377483444"; depth 151 ; known ; N/A GL192403.1 samtools variation 2257565 2257565 . . . alleles " C G"; frequencies " 0.453947368421053 0.546052631578947"; depth 304 ; known ; N/A GL192403.1 samtools variation 2258613 2258613 . . . alleles " C T"; frequencies " 0.537037037037037 0.462962962962963"; depth 54 ; unknown ; N/A GL192403.1 samtools variation 2258832 2258832 . . . alleles " C T"; frequencies " 0.711475409836066 0.288524590163934"; depth 305 ; unknown ; N/A GL192403.1 samtools variation 2259007 2259007 . . . alleles " T C"; frequencies " 0.66497461928934 0.33502538071066"; depth 394 ; unknown ; N/A GL192403.1 samtools variation 2259027 2259027 . . . alleles " A G"; frequencies " 0.660649819494585 0.339350180505415"; depth 277 ; unknown ; N/A GL192403.1 samtools variation 2259107 2259107 . . . alleles " T C"; frequencies " 0.731308411214953 0.268691588785047"; depth 428 ; unknown ; synonymous GL192403.1 samtools variation 2260569 2260569 . . . alleles " G A"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL192403.1 samtools variation 2260751 2260751 . . . alleles " T C"; frequencies " 0.703703703703704 0.296296296296296"; depth 54 ; unknown ; N/A GL192403.1 samtools variation 2260848 2260848 . . . alleles " C T"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; N/A GL192403.1 samtools variation 2260894 2260894 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 51 ; known ; N/A GL192403.1 samtools variation 2261847 2261847 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 110 ; unknown ; N/A GL192403.1 samtools variation 2263773 2263773 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL192403.1 samtools variation 2264781 2264781 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192403.1 samtools variation 2265470 2265470 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192403.1 samtools variation 2265576 2265576 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 54 ; unknown ; N/A GL192403.1 samtools variation 2265705 2265705 . . . alleles " A G"; frequencies " 0.242647058823529 0.757352941176471"; depth 136 ; unknown ; N/A GL192403.1 samtools variation 2265791 2265791 . . . alleles " A G"; frequencies " 0.492537313432836 0.507462686567164"; depth 67 ; unknown ; N/A GL192403.1 samtools variation 2266082 2266082 . . . alleles " A G"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; unknown ; N/A GL192403.1 samtools variation 2267400 2267400 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 40 ; unknown ; N/A GL192403.1 samtools variation 2268102 2268102 . . . alleles " G T"; frequencies " 0.611111111111111 0.388888888888889"; depth 54 ; unknown ; N/A GL192403.1 samtools variation 2268173 2268173 . . . alleles " T C"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL192403.1 samtools variation 2268326 2268326 . . . alleles " A C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192403.1 samtools variation 2268449 2268449 . . . alleles " C T"; frequencies " 0.568181818181818 0.431818181818182"; depth 44 ; unknown ; N/A GL192403.1 samtools variation 2268499 2268499 . . . alleles " G A"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; unknown ; N/A GL192403.1 samtools variation 2268561 2268561 . . . alleles " T C"; frequencies " 0.581395348837209 0.418604651162791"; depth 43 ; unknown ; N/A GL192403.1 samtools variation 2269282 2269282 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192403.1 samtools variation 2271888 2271888 . . . alleles " T G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192403.1 samtools variation 2272250 2272250 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192403.1 samtools variation 2277859 2277859 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192403.1 samtools variation 2279214 2279214 . . . alleles " C T"; frequencies " 0.728260869565217 0.271739130434783"; depth 276 ; known ; synonymous GL192403.1 samtools variation 2279758 2279758 . . . alleles " A T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192403.1 samtools variation 2292838 2292838 . . . alleles " A C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192403.1 samtools variation 2330202 2330202 . . . alleles " G A"; frequencies " 0.760869565217391 0.239130434782609"; depth 46 ; unknown ; N/A GL192403.1 samtools variation 2355152 2355152 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192403.1 samtools variation 2355273 2355273 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192403.1 samtools variation 2356272 2356272 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192403.1 samtools variation 2380510 2380510 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 75 ; unknown ; N/A GL192403.1 samtools variation 2383972 2383972 . . . alleles " T C"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192403.1 samtools variation 2581533 2581533 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192403.1 samtools variation 2582595 2582595 . . . alleles " A G"; frequencies " 0.540540540540541 0.459459459459459"; depth 148 ; unknown ; N/A GL192403.1 samtools variation 2582635 2582635 . . . alleles " A G"; frequencies " 0.502369668246445 0.497630331753554"; depth 211 ; unknown ; N/A GL192403.1 samtools variation 2583198 2583198 . . . alleles " T C"; frequencies " 0.788079470198676 0.211920529801325"; depth 151 ; unknown ; synonymous GL192403.1 samtools variation 2583336 2583336 . . . alleles " C G"; frequencies " 0.747126436781609 0.252873563218391"; depth 87 ; unknown ; non-synonymous GL192403.1 samtools variation 2583405 2583405 . . . alleles " C T"; frequencies " 0.676923076923077 0.323076923076923"; depth 130 ; unknown ; synonymous GL192403.1 samtools variation 2583567 2583567 . . . alleles " G A"; frequencies " 0.716494845360825 0.283505154639175"; depth 194 ; unknown ; synonymous GL192403.1 samtools variation 2586889 2586889 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192403.1 samtools variation 3075522 3075522 . . . alleles " C T"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; unknown ; N/A GL192403.1 samtools variation 3191081 3191081 . . . alleles " G C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192403.1 samtools variation 3214490 3214490 . . . alleles " T G"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; N/A GL192403.1 samtools variation 3245219 3245219 . . . alleles " T C"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL192403.1 samtools variation 3245418 3245418 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192403.1 samtools variation 3246069 3246069 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192403.1 samtools variation 3246426 3246426 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192403.1 samtools variation 3246816 3246816 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192403.1 samtools variation 3256817 3256817 . . . alleles " C A"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL192403.1 samtools variation 3256866 3256866 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL192403.1 samtools variation 3256980 3256980 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192403.1 samtools variation 3268045 3268045 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192403.1 samtools variation 3268669 3268669 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL192403.1 samtools variation 3268851 3268851 . . . alleles " T G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL192403.1 samtools variation 3271508 3271508 . . . alleles " T G"; frequencies " 0.563636363636364 0.436363636363636"; depth 55 ; known ; N/A GL192403.1 samtools variation 3271900 3271900 . . . alleles " C T"; frequencies " 0.406779661016949 0.593220338983051"; depth 59 ; known ; N/A GL192403.1 samtools variation 3272042 3272042 . . . alleles " A T"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; known ; N/A GL192403.1 samtools variation 3272050 3272050 . . . alleles " C A"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; known ; N/A GL192403.1 samtools variation 3272229 3272229 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 115 ; known ; N/A GL192403.1 samtools variation 3272569 3272569 . . . alleles " C T"; frequencies " 0.531746031746032 0.468253968253968"; depth 126 ; known ; N/A GL192403.1 samtools variation 3273933 3273933 . . . alleles " T C"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL192403.1 samtools variation 3275331 3275331 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; known ; N/A GL192403.1 samtools variation 3279626 3279626 . . . alleles " G A"; frequencies " 0.319634703196347 0.680365296803653"; depth 219 ; known ; N/A GL192403.1 samtools variation 3280395 3280395 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 66 ; known ; N/A GL192403.1 samtools variation 3281324 3281324 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; known ; N/A GL192404.1 samtools variation 985298 985298 . . . alleles " C A"; frequencies " 0.25 0.75"; depth 16 ; unknown ; non-synonymous GL192404.1 samtools variation 985519 985519 . . . alleles " G A"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; unknown ; synonymous GL192404.1 samtools variation 997033 997033 . . . alleles " G A"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; known ; synonymous GL192404.1 samtools variation 997066 997066 . . . alleles " C T"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; synonymous GL192404.1 samtools variation 1018982 1018982 . . . alleles " A C"; frequencies " 0.531914893617021 0.468085106382979"; depth 47 ; unknown ; N/A GL192404.1 samtools variation 1020104 1020104 . . . alleles " G C"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192404.1 samtools variation 1063025 1063025 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; non-synonymous GL192404.1 samtools variation 1068027 1068027 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; known ; synonymous GL192404.1 samtools variation 1068054 1068054 . . . alleles " C G"; frequencies " 0.605263157894737 0.368421052631579"; depth 38 ; known ; synonymous GL192404.1 samtools variation 1068174 1068174 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 32 ; known ; synonymous GL192404.1 samtools variation 1087868 1087868 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192404.1 samtools variation 1088065 1088065 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192404.1 samtools variation 1088768 1088768 . . . alleles " A G"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; known ; N/A GL192404.1 samtools variation 1118328 1118328 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; non-synonymous GL192404.1 samtools variation 1208516 1208516 . . . alleles " C T"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; synonymous GL192404.1 samtools variation 2795190 2795190 . . . alleles " T C"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; non-synonymous GL192404.1 samtools variation 2796289 2796289 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; synonymous GL192404.1 samtools variation 2849140 2849140 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192404.1 samtools variation 2863000 2863000 . . . alleles " G T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192404.1 samtools variation 2866527 2866527 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192404.1 samtools variation 2868329 2868329 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192404.1 samtools variation 2874385 2874385 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 36 ; unknown ; N/A GL192404.1 samtools variation 2875191 2875191 . . . alleles " T C"; frequencies " 0.236111111111111 0.763888888888889"; depth 72 ; known ; N/A GL192404.1 samtools variation 2875319 2875319 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192404.1 samtools variation 2875450 2875450 . . . alleles " C G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192404.1 samtools variation 2875564 2875564 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; unknown ; N/A GL192404.1 samtools variation 2875948 2875948 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 75 ; unknown ; N/A GL192404.1 samtools variation 2877093 2877093 . . . alleles " C T"; frequencies " 0.694656488549618 0.305343511450382"; depth 131 ; unknown ; synonymous GL192404.1 samtools variation 2877510 2877510 . . . alleles " C T"; frequencies " 0.751633986928105 0.248366013071895"; depth 153 ; unknown ; synonymous GL192405.1 samtools variation 893677 893677 . . . alleles " A C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192405.1 samtools variation 1047547 1047547 . . . alleles " T C"; frequencies " 0.659420289855073 0.340579710144928"; depth 276 ; known ; synonymous GL192405.1 samtools variation 1052562 1052562 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192405.1 samtools variation 1077605 1077605 . . . alleles " T C"; frequencies " 0.644628099173554 0.355371900826446"; depth 121 ; known ; N/A GL192405.1 samtools variation 1077964 1077964 . . . alleles " A G"; frequencies " 0.340579710144928 0.659420289855073"; depth 276 ; known ; N/A GL192405.1 samtools variation 1367677 1367677 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192405.1 samtools variation 1383647 1383647 . . . alleles " C T"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; known ; N/A GL192405.1 samtools variation 1433566 1433566 . . . alleles " C T"; frequencies " 0.490066225165563 0.509933774834437"; depth 151 ; unknown ; synonymous GL192405.1 samtools variation 1442702 1442702 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192405.1 samtools variation 1444414 1444414 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192405.1 samtools variation 1444529 1444529 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192405.1 samtools variation 1444791 1444791 . . . alleles " G C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192405.1 samtools variation 1449091 1449091 . . . alleles " C T"; frequencies " 0.548179871520343 0.451820128479657"; depth 467 ; unknown ; synonymous GL192405.1 samtools variation 1835666 1835666 . . . alleles " G A"; frequencies " 0.201543739279588 0.798456260720412"; depth 1166 ; known ; N/A GL192405.1 samtools variation 1836438 1836438 . . . alleles " T C"; frequencies " 0.383015597920277 0.616984402079723"; depth 577 ; known ; N/A GL192405.1 samtools variation 1837868 1837868 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL192405.1 samtools variation 1847347 1847347 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192405.1 samtools variation 1901338 1901338 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192405.1 samtools variation 1937995 1937995 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192405.1 samtools variation 2126792 2126792 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 54 ; known ; N/A GL192405.1 samtools variation 2127236 2127236 . . . alleles " A C"; frequencies " 0.262295081967213 0.737704918032787"; depth 61 ; known ; N/A GL192405.1 samtools variation 2127284 2127284 . . . alleles " C T"; frequencies " 0.594936708860759 0.405063291139241"; depth 79 ; known ; N/A GL192405.1 samtools variation 2240723 2240723 . . . alleles " A C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL192405.1 samtools variation 2557142 2557142 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192405.1 samtools variation 2570499 2570499 . . . alleles " G A"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL192405.1 samtools variation 2605121 2605121 . . . alleles " C G"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; unknown ; synonymous GL192405.1 samtools variation 2746894 2746894 . . . alleles " T A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192405.1 samtools variation 2747662 2747662 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192405.1 samtools variation 2748317 2748317 . . . alleles " C A"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192405.1 samtools variation 2748366 2748366 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192405.1 samtools variation 2768949 2768949 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192405.1 samtools variation 2772001 2772001 . . . alleles " A T"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL192405.1 samtools variation 2772161 2772161 . . . alleles " T C"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192405.1 samtools variation 2778285 2778285 . . . alleles " T C"; frequencies " 0.651639344262295 0.348360655737705"; depth 244 ; unknown ; synonymous GL192405.1 samtools variation 2778952 2778952 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192405.1 samtools variation 2779236 2779236 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192405.1 samtools variation 2783530 2783530 . . . alleles " T G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192405.1 samtools variation 2783537 2783537 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192405.1 samtools variation 2794399 2794399 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192406.1 samtools variation 77026 77026 . . . alleles " A G"; frequencies " 0.519125683060109 0.480874316939891"; depth 183 ; known ; synonymous GL192406.1 samtools variation 188575 188575 . . . alleles " G T"; frequencies " 0.694915254237288 0.305084745762712"; depth 59 ; unknown ; synonymous GL192406.1 samtools variation 222389 222389 . . . alleles " G A"; frequencies " 0.598425196850394 0.401574803149606"; depth 127 ; known ; non-synonymous GL192406.1 samtools variation 223040 223040 . . . alleles " A G"; frequencies " 0.642201834862385 0.357798165137615"; depth 109 ; unknown ; N/A GL192406.1 samtools variation 224733 224733 . . . alleles " C G"; frequencies " 0.581227436823105 0.418772563176895"; depth 277 ; unknown ; N/A GL192406.1 samtools variation 227608 227608 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192406.1 samtools variation 250000 250000 . . . alleles " T C"; frequencies " 0.678571428571429 0.321428571428571"; depth 112 ; unknown ; synonymous GL192406.1 samtools variation 336642 336642 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192406.1 samtools variation 1650062 1650062 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL192406.1 samtools variation 1651754 1651754 . . . alleles " G C"; frequencies " 0.390243902439024 0.609756097560976"; depth 41 ; known ; non-synonymous GL192406.1 samtools variation 1655064 1655064 . . . alleles " T C"; frequencies " 0.540983606557377 0.459016393442623"; depth 61 ; known ; non-synonymous GL192406.1 samtools variation 1657539 1657539 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192406.1 samtools variation 1668315 1668315 . . . alleles " T A"; frequencies " 0.78 0.22"; depth 50 ; unknown ; synonymous GL192406.1 samtools variation 1695622 1695622 . . . alleles " G A"; frequencies " 0.559633027522936 0.440366972477064"; depth 109 ; known ; synonymous GL192406.1 samtools variation 1708646 1708646 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; synonymous GL192406.1 samtools variation 1827607 1827607 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL192406.1 samtools variation 1829170 1829170 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192406.1 samtools variation 1829734 1829734 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192406.1 samtools variation 1831091 1831091 . . . alleles " A G"; frequencies " 0.492063492063492 0.507936507936508"; depth 63 ; unknown ; N/A GL192406.1 samtools variation 1835272 1835272 . . . alleles " G A"; frequencies " 0.730650154798762 0.269349845201238"; depth 323 ; unknown ; synonymous GL192406.1 samtools variation 1835810 1835810 . . . alleles " G T"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192406.1 samtools variation 1835873 1835873 . . . alleles " A G"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL192406.1 samtools variation 1838501 1838501 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192406.1 samtools variation 1839170 1839170 . . . alleles " G A"; frequencies " 0.627586206896552 0.372413793103448"; depth 145 ; known ; synonymous GL192406.1 samtools variation 1840964 1840964 . . . alleles " A G"; frequencies " 0.476923076923077 0.523076923076923"; depth 195 ; unknown ; synonymous GL192406.1 samtools variation 1841274 1841274 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192406.1 samtools variation 1842241 1842241 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192406.1 samtools variation 1843349 1843349 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192406.1 samtools variation 1866975 1866975 . . . alleles " G C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192406.1 samtools variation 1871620 1871620 . . . alleles " G C"; frequencies " 0.772727272727273 0.227272727272727"; depth 88 ; unknown ; N/A GL192406.1 samtools variation 2315331 2315331 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192406.1 samtools variation 2317096 2317096 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192406.1 samtools variation 2317630 2317630 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192406.1 samtools variation 2428555 2428555 . . . alleles " A G"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; synonymous GL192406.1 samtools variation 2512713 2512713 . . . alleles " A G"; frequencies " 0.675 0.325"; depth 40 ; known ; synonymous GL192406.1 samtools variation 2696372 2696372 . . . alleles " G A"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL192406.1 samtools variation 2700948 2700948 . . . alleles " C T"; frequencies " 0.78343949044586 0.21656050955414"; depth 785 ; unknown ; N/A GL192406.1 samtools variation 2703034 2703034 . . . alleles " T C"; frequencies " 0.773168578993822 0.226831421006178"; depth 1133 ; unknown ; N/A GL192406.1 samtools variation 2704130 2704130 . . . alleles " C G"; frequencies " 0.689578713968958 0.310421286031042"; depth 451 ; known ; N/A GL192406.1 samtools variation 2704506 2704506 . . . alleles " C G"; frequencies " 0.651777575205105 0.348222424794895"; depth 1097 ; unknown ; N/A GL192406.1 samtools variation 2714049 2714049 . . . alleles " C T"; frequencies " 0.694656488549618 0.305343511450382"; depth 131 ; unknown ; N/A GL192406.1 samtools variation 2715745 2715745 . . . alleles " G A"; frequencies " 0.743589743589744 0.256410256410256"; depth 78 ; unknown ; N/A GL192406.1 samtools variation 2719888 2719888 . . . alleles " G A"; frequencies " 0.717948717948718 0.282051282051282"; depth 117 ; unknown ; N/A GL192406.1 samtools variation 2720465 2720465 . . . alleles " C A"; frequencies " 0.756849315068493 0.243150684931507"; depth 292 ; unknown ; N/A GL192406.1 samtools variation 2724224 2724224 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; known ; N/A GL192406.1 samtools variation 2727788 2727788 . . . alleles " G T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; N/A GL192406.1 samtools variation 2732090 2732090 . . . alleles " G C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192406.1 samtools variation 2810737 2810737 . . . alleles " C T"; frequencies " 0.658823529411765 0.341176470588235"; depth 255 ; unknown ; non-synonymous GL192406.1 samtools variation 3105424 3105424 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192406.1 samtools variation 3112743 3112743 . . . alleles " A G"; frequencies " 0.655339805825243 0.344660194174757"; depth 206 ; unknown ; N/A GL192406.1 samtools variation 3113690 3113690 . . . alleles " A G"; frequencies " 0.657407407407407 0.342592592592593"; depth 108 ; unknown ; N/A GL192407.1 samtools variation 135307 135307 . . . alleles " A G"; frequencies " 0.70440251572327 0.29559748427673"; depth 318 ; known ; non-synonymous GL192407.1 samtools variation 176149 176149 . . . alleles " T C"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; N/A GL192407.1 samtools variation 176997 176997 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192407.1 samtools variation 177569 177569 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192407.1 samtools variation 829318 829318 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; non-synonymous GL192407.1 samtools variation 829361 829361 . . . alleles " T C"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; synonymous GL192407.1 samtools variation 829630 829630 . . . alleles " A C"; frequencies " 0.507936507936508 0.492063492063492"; depth 63 ; unknown ; synonymous GL192407.1 samtools variation 829802 829802 . . . alleles " G T"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; unknown ; non-synonymous GL192407.1 samtools variation 958395 958395 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 38 ; unknown ; N/A GL192407.1 samtools variation 1116485 1116485 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192407.1 samtools variation 1116562 1116562 . . . alleles " C A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192407.1 samtools variation 1134964 1134964 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 70 ; unknown ; synonymous GL192407.1 samtools variation 1144216 1144216 . . . alleles " C A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192407.1 samtools variation 1144320 1144320 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192407.1 samtools variation 1145018 1145018 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192407.1 samtools variation 1230440 1230440 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192407.1 samtools variation 1603776 1603776 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 95 ; unknown ; non-synonymous GL192407.1 samtools variation 1621693 1621693 . . . alleles " T G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192407.1 samtools variation 1633261 1633261 . . . alleles " A G"; frequencies " 0.316666666666667 0.683333333333333"; depth 60 ; unknown ; synonymous GL192407.1 samtools variation 1633262 1633262 . . . alleles " A C"; frequencies " 0.316666666666667 0.683333333333333"; depth 60 ; unknown ; synonymous GL192407.1 samtools variation 1646482 1646482 . . . alleles " T G"; frequencies " 0.372093023255814 0.627906976744186"; depth 43 ; unknown ; N/A GL192407.1 samtools variation 1646484 1646484 . . . alleles " G A"; frequencies " 0.404761904761905 0.595238095238095"; depth 42 ; unknown ; N/A GL192407.1 samtools variation 1738338 1738338 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192407.1 samtools variation 1740233 1740233 . . . alleles " C T"; frequencies " 0.744827586206897 0.255172413793103"; depth 145 ; unknown ; N/A GL192407.1 samtools variation 1742178 1742178 . . . alleles " A G"; frequencies " 0.271186440677966 0.728813559322034"; depth 59 ; unknown ; N/A GL192407.1 samtools variation 1743517 1743517 . . . alleles " T C"; frequencies " 0.281767955801105 0.718232044198895"; depth 181 ; unknown ; N/A GL192407.1 samtools variation 1744723 1744723 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 42 ; unknown ; N/A GL192407.1 samtools variation 1745131 1745131 . . . alleles " T C"; frequencies " 0.672413793103448 0.327586206896552"; depth 174 ; unknown ; synonymous GL192407.1 samtools variation 1781510 1781510 . . . alleles " G A"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; unknown ; N/A GL192407.1 samtools variation 1783142 1783142 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192407.1 samtools variation 1861497 1861497 . . . alleles " T C"; frequencies " 0.36 0.64"; depth 25 ; known ; N/A GL192407.1 samtools variation 2062186 2062186 . . . alleles " G A"; frequencies " 0.355555555555556 0.644444444444444"; depth 45 ; known ; synonymous GL192407.1 samtools variation 2075149 2075149 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192407.1 samtools variation 2077016 2077016 . . . alleles " C T"; frequencies " 0.738255033557047 0.25503355704698"; depth 149 ; known ; non-synonymous GL192407.1 samtools variation 2081454 2081454 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; N/A GL192407.1 samtools variation 2084115 2084115 . . . alleles " G T"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL192407.1 samtools variation 2085261 2085261 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192407.1 samtools variation 2100853 2100853 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 56 ; known ; synonymous GL192407.1 samtools variation 2104785 2104785 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL192407.1 samtools variation 2104831 2104831 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192407.1 samtools variation 2113395 2113395 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 80 ; known ; N/A GL192407.1 samtools variation 2115725 2115725 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 105 ; unknown ; synonymous GL192407.1 samtools variation 2129643 2129643 . . . alleles " T G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192407.1 samtools variation 2129730 2129730 . . . alleles " C T"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192407.1 samtools variation 2130757 2130757 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192407.1 samtools variation 2136677 2136677 . . . alleles " T G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192407.1 samtools variation 2139812 2139812 . . . alleles " C T"; frequencies " 0.326530612244898 0.673469387755102"; depth 49 ; known ; N/A GL192407.1 samtools variation 2140987 2140987 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 38 ; known ; N/A GL192407.1 samtools variation 2141118 2141118 . . . alleles " C T"; frequencies " 0.479166666666667 0.520833333333333"; depth 48 ; known ; N/A GL192407.1 samtools variation 2142231 2142231 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 44 ; known ; N/A GL192407.1 samtools variation 2142615 2142615 . . . alleles " G A"; frequencies " 0.66 0.34"; depth 100 ; unknown ; N/A GL192407.1 samtools variation 2145257 2145257 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 36 ; known ; N/A GL192407.1 samtools variation 2147491 2147491 . . . alleles " A G"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL192407.1 samtools variation 2147592 2147592 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192407.1 samtools variation 2274364 2274364 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 42 ; unknown ; non-synonymous GL192407.1 samtools variation 2284655 2284655 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 76 ; unknown ; synonymous GL192407.1 samtools variation 2858144 2858144 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192407.1 samtools variation 2858243 2858243 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL192407.1 samtools variation 2860417 2860417 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; N/A GL192407.1 samtools variation 2877337 2877337 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL192407.1 samtools variation 2880269 2880269 . . . alleles " C T"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL192407.1 samtools variation 2950416 2950416 . . . alleles " C T"; frequencies " 0.620689655172414 0.379310344827586"; depth 58 ; known ; synonymous GL192408.1 samtools variation 621501 621501 . . . alleles " T G"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192408.1 samtools variation 1084173 1084173 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 68 ; unknown ; non-synonymous GL192408.1 samtools variation 1537075 1537075 . . . alleles " A G"; frequencies " 0.390243902439024 0.609756097560976"; depth 41 ; unknown ; non-synonymous GL192408.1 samtools variation 2074819 2074819 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL192408.1 samtools variation 2077935 2077935 . . . alleles " C T"; frequencies " 0.76865671641791 0.23134328358209"; depth 134 ; known ; N/A GL192408.1 samtools variation 2078766 2078766 . . . alleles " A G"; frequencies " 0.701298701298701 0.298701298701299"; depth 154 ; known ; N/A GL192408.1 samtools variation 2078878 2078878 . . . alleles " T G"; frequencies " 0.3 0.7"; depth 100 ; known ; N/A GL192408.1 samtools variation 2080500 2080500 . . . alleles " A G"; frequencies " 0.561215370866845 0.438784629133155"; depth 1119 ; known ; N/A GL192408.1 samtools variation 2080559 2080559 . . . alleles " C T"; frequencies " 0.510671323244082 0.489328676755918"; depth 2577 ; known ; N/A GL192408.1 samtools variation 2080655 2080655 . . . alleles " G A"; frequencies " 0.538744032317297 0.460888725670217"; depth 2723 ; known ; N/A GL192408.1 samtools variation 2080789 2080789 . . . alleles " T C"; frequencies " 0.31855309218203 0.68144690781797"; depth 1714 ; known ; N/A GL192408.1 samtools variation 2081349 2081349 . . . alleles " G A"; frequencies " 0.611550632911392 0.388449367088608"; depth 1264 ; known ; N/A GL192408.1 samtools variation 2082043 2082043 . . . alleles " T C"; frequencies " 0.481822588463403 0.518177411536597"; depth 2063 ; known ; N/A GL192408.1 samtools variation 2082299 2082299 . . . alleles " C G"; frequencies " 0.44 0.56"; depth 25 ; known ; N/A GL192408.1 samtools variation 2082420 2082420 . . . alleles " T C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192408.1 samtools variation 2082576 2082576 . . . alleles " T C"; frequencies " 0.592592592592593 0.407407407407407"; depth 54 ; known ; N/A GL192408.1 samtools variation 2083415 2083415 . . . alleles " G A"; frequencies " 0.448275862068966 0.551724137931034"; depth 58 ; known ; N/A GL192408.1 samtools variation 2083503 2083503 . . . alleles " C A"; frequencies " 0.413223140495868 0.578512396694215"; depth 121 ; known ; N/A GL192408.1 samtools variation 2083551 2083551 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 112 ; known ; N/A GL192408.1 samtools variation 2084802 2084802 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL192408.1 samtools variation 2084988 2084988 . . . alleles " G A"; frequencies " 0.424258760107817 0.575202156334232"; depth 1855 ; known ; synonymous GL192408.1 samtools variation 2085311 2085311 . . . alleles " T C"; frequencies " 0.672619047619048 0.327380952380952"; depth 168 ; known ; N/A GL192408.1 samtools variation 2085810 2085810 . . . alleles " T C"; frequencies " 0.698412698412698 0.301587301587302"; depth 189 ; known ; N/A GL192408.1 samtools variation 2086238 2086238 . . . alleles " T C"; frequencies " 0.78 0.22"; depth 100 ; unknown ; N/A GL192408.1 samtools variation 2087139 2087139 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 160 ; known ; N/A GL192408.1 samtools variation 2087237 2087237 . . . alleles " G A"; frequencies " 0.594936708860759 0.405063291139241"; depth 79 ; known ; N/A GL192408.1 samtools variation 2087381 2087381 . . . alleles " T C"; frequencies " 0.380952380952381 0.619047619047619"; depth 126 ; known ; N/A GL192408.1 samtools variation 2087584 2087584 . . . alleles " G C"; frequencies " 0.395833333333333 0.604166666666667"; depth 48 ; known ; N/A GL192408.1 samtools variation 2087630 2087630 . . . alleles " A G"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL192408.1 samtools variation 2087662 2087662 . . . alleles " G A"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; known ; N/A GL192408.1 samtools variation 2087896 2087896 . . . alleles " G A"; frequencies " 0.740112994350282 0.259887005649718"; depth 177 ; known ; N/A GL192408.1 samtools variation 2089766 2089766 . . . alleles " A G"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; known ; N/A GL192408.1 samtools variation 2089858 2089858 . . . alleles " C T"; frequencies " 0.53125 0.46875"; depth 32 ; known ; N/A GL192408.1 samtools variation 2090480 2090480 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 50 ; known ; N/A GL192408.1 samtools variation 2099780 2099780 . . . alleles " A G"; frequencies " 0.426229508196721 0.573770491803279"; depth 61 ; known ; N/A GL192408.1 samtools variation 2105228 2105228 . . . alleles " T C"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; known ; N/A GL192408.1 samtools variation 2111120 2111120 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL192408.1 samtools variation 2111309 2111309 . . . alleles " A G"; frequencies " 0.475618904726182 0.523630907726932"; depth 1333 ; known ; synonymous GL192408.1 samtools variation 2113474 2113474 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192408.1 samtools variation 2235896 2235896 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192408.1 samtools variation 2238294 2238294 . . . alleles " A C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192408.1 samtools variation 2238912 2238912 . . . alleles " A G"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; known ; N/A GL192408.1 samtools variation 2242102 2242102 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 66 ; known ; non-synonymous GL192408.1 samtools variation 2242109 2242109 . . . alleles " C T"; frequencies " 0.276923076923077 0.723076923076923"; depth 65 ; known ; synonymous GL192408.1 samtools variation 2243878 2243878 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192408.1 samtools variation 2250634 2250634 . . . alleles " C G"; frequencies " 0.773809523809524 0.226190476190476"; depth 84 ; known ; non-synonymous GL192408.1 samtools variation 2251881 2251881 . . . alleles " G A"; frequencies " 0.265625 0.734375"; depth 64 ; known ; non-synonymous GL192408.1 samtools variation 2260527 2260527 . . . alleles " A G"; frequencies " 0.283582089552239 0.716417910447761"; depth 67 ; known ; non-synonymous GL192408.1 samtools variation 2260563 2260563 . . . alleles " T G"; frequencies " 0.728571428571429 0.271428571428571"; depth 70 ; known ; non-synonymous GL192408.1 samtools variation 2266389 2266389 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192408.1 samtools variation 2540075 2540075 . . . alleles " G C"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192408.1 samtools variation 2541316 2541316 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192408.1 samtools variation 2544291 2544291 . . . alleles " G T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192408.1 samtools variation 2544319 2544319 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; unknown ; N/A GL192408.1 samtools variation 2558373 2558373 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192408.1 samtools variation 2558474 2558474 . . . alleles " T C"; frequencies " 0.39622641509434 0.60377358490566"; depth 53 ; unknown ; N/A GL192408.1 samtools variation 2558502 2558502 . . . alleles " C T"; frequencies " 0.367647058823529 0.632352941176471"; depth 68 ; unknown ; synonymous GL192408.1 samtools variation 2567207 2567207 . . . alleles " T C"; frequencies " 0.385714285714286 0.614285714285714"; depth 140 ; unknown ; synonymous GL192408.1 samtools variation 2568122 2568122 . . . alleles " G T"; frequencies " 0.372093023255814 0.627906976744186"; depth 43 ; unknown ; N/A GL192408.1 samtools variation 2577189 2577189 . . . alleles " G A"; frequencies " 0.373626373626374 0.626373626373626"; depth 182 ; unknown ; N/A GL192408.1 samtools variation 2613796 2613796 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; non-synonymous GL192408.1 samtools variation 2718368 2718368 . . . alleles " G A"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; N/A GL192409.1 samtools variation 147329 147329 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192409.1 samtools variation 149875 149875 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192409.1 samtools variation 153032 153032 . . . alleles " C T"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL192409.1 samtools variation 153048 153048 . . . alleles " T C"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; known ; N/A GL192409.1 samtools variation 177562 177562 . . . alleles " T G"; frequencies " 0.746268656716418 0.253731343283582"; depth 67 ; unknown ; N/A GL192409.1 samtools variation 196172 196172 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192409.1 samtools variation 258614 258614 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192409.1 samtools variation 307404 307404 . . . alleles " G T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192409.1 samtools variation 311403 311403 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192409.1 samtools variation 311653 311653 . . . alleles " A G"; frequencies " 0.734328358208955 0.265671641791045"; depth 335 ; unknown ; synonymous GL192409.1 samtools variation 315290 315290 . . . alleles " G T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; known ; N/A GL192409.1 samtools variation 315886 315886 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192409.1 samtools variation 337614 337614 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192409.1 samtools variation 338731 338731 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192409.1 samtools variation 339560 339560 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192409.1 samtools variation 339583 339583 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192409.1 samtools variation 343559 343559 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192409.1 samtools variation 343819 343819 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192409.1 samtools variation 349055 349055 . . . alleles " A G"; frequencies " 0.609756097560976 0.390243902439024"; depth 41 ; unknown ; N/A GL192409.1 samtools variation 351150 351150 . . . alleles " G A"; frequencies " 0.241935483870968 0.758064516129032"; depth 310 ; known ; synonymous GL192409.1 samtools variation 356605 356605 . . . alleles " A G"; frequencies " 0.536585365853659 0.463414634146341"; depth 451 ; known ; synonymous GL192409.1 samtools variation 367362 367362 . . . alleles " C T"; frequencies " 0.79002624671916 0.20997375328084"; depth 381 ; unknown ; synonymous GL192409.1 samtools variation 371741 371741 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192409.1 samtools variation 375337 375337 . . . alleles " T C"; frequencies " 0.782208588957055 0.214723926380368"; depth 326 ; unknown ; synonymous GL192409.1 samtools variation 382131 382131 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192409.1 samtools variation 383752 383752 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192409.1 samtools variation 383851 383851 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192409.1 samtools variation 383882 383882 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192409.1 samtools variation 386795 386795 . . . alleles " T C"; frequencies " 0.594594594594595 0.405405405405405"; depth 37 ; known ; N/A GL192409.1 samtools variation 388005 388005 . . . alleles " C T"; frequencies " 0.213523131672598 0.786476868327402"; depth 281 ; known ; N/A GL192409.1 samtools variation 389038 389038 . . . alleles " C T"; frequencies " 0.736507936507937 0.263492063492063"; depth 315 ; unknown ; N/A GL192409.1 samtools variation 413085 413085 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192409.1 samtools variation 413117 413117 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192409.1 samtools variation 449093 449093 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192409.1 samtools variation 449275 449275 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192409.1 samtools variation 452660 452660 . . . alleles " G A"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; known ; N/A GL192409.1 samtools variation 456166 456166 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192409.1 samtools variation 461743 461743 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL192409.1 samtools variation 466881 466881 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL192409.1 samtools variation 511236 511236 . . . alleles " A G"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL192409.1 samtools variation 514548 514548 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; known ; N/A GL192409.1 samtools variation 515747 515747 . . . alleles " C T"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192409.1 samtools variation 539085 539085 . . . alleles " G C"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192409.1 samtools variation 539501 539501 . . . alleles " T C"; frequencies " 0.354166666666667 0.645833333333333"; depth 48 ; known ; N/A GL192409.1 samtools variation 542702 542702 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192409.1 samtools variation 545125 545125 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192409.1 samtools variation 550480 550480 . . . alleles " T C"; frequencies " 0.253676470588235 0.746323529411765"; depth 544 ; known ; N/A GL192409.1 samtools variation 2015049 2015049 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192409.1 samtools variation 2015129 2015129 . . . alleles " T C"; frequencies " 0.293478260869565 0.706521739130435"; depth 92 ; known ; N/A GL192409.1 samtools variation 2015218 2015218 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 52 ; known ; N/A GL192409.1 samtools variation 2015797 2015797 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192409.1 samtools variation 2016025 2016025 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; N/A GL192409.1 samtools variation 2016028 2016028 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL192409.1 samtools variation 2016274 2016274 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 56 ; known ; N/A GL192409.1 samtools variation 2017117 2017117 . . . alleles " C A"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192409.1 samtools variation 2017275 2017275 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192409.1 samtools variation 2017285 2017285 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL192409.1 samtools variation 2017376 2017376 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL192409.1 samtools variation 2017718 2017718 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 36 ; known ; N/A GL192409.1 samtools variation 2018310 2018310 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192409.1 samtools variation 2018573 2018573 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192409.1 samtools variation 2020186 2020186 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192409.1 samtools variation 2022180 2022180 . . . alleles " A G"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL192409.1 samtools variation 2022232 2022232 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192409.1 samtools variation 2022249 2022249 . . . alleles " C G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL192409.1 samtools variation 2022348 2022348 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192409.1 samtools variation 2024520 2024520 . . . alleles " C A"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192409.1 samtools variation 2096487 2096487 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192409.1 samtools variation 2277768 2277768 . . . alleles " A G"; frequencies " 0.546558704453441 0.453441295546559"; depth 247 ; unknown ; N/A GL192409.1 samtools variation 2280102 2280102 . . . alleles " G C"; frequencies " 0.742647058823529 0.257352941176471"; depth 136 ; unknown ; synonymous GL192409.1 samtools variation 2280368 2280368 . . . alleles " A G"; frequencies " 0.48780487804878 0.51219512195122"; depth 41 ; known ; N/A GL192410.1 samtools variation 652155 652155 . . . alleles " A G"; frequencies " 0.776470588235294 0.223529411764706"; depth 85 ; unknown ; synonymous GL192410.1 samtools variation 655272 655272 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192410.1 samtools variation 655290 655290 . . . alleles " G T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192410.1 samtools variation 655351 655351 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192410.1 samtools variation 655378 655378 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192410.1 samtools variation 655448 655448 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192410.1 samtools variation 655451 655451 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192410.1 samtools variation 667015 667015 . . . alleles " A G"; frequencies " 0.784172661870504 0.215827338129496"; depth 139 ; unknown ; synonymous GL192410.1 samtools variation 682089 682089 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192410.1 samtools variation 694085 694085 . . . alleles " A G"; frequencies " 0.510869565217391 0.489130434782609"; depth 92 ; unknown ; synonymous GL192410.1 samtools variation 694662 694662 . . . alleles " T A"; frequencies " 0.551724137931034 0.448275862068966"; depth 116 ; unknown ; non-synonymous GL192410.1 samtools variation 698406 698406 . . . alleles " C G"; frequencies " 0.784810126582278 0.215189873417722"; depth 79 ; unknown ; non-synonymous GL192410.1 samtools variation 749389 749389 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; non-synonymous GL192410.1 samtools variation 749862 749862 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; non-synonymous GL192410.1 samtools variation 750252 750252 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; non-synonymous GL192410.1 samtools variation 846945 846945 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 49 ; unknown ; synonymous GL192410.1 samtools variation 2445357 2445357 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192410.1 samtools variation 2445735 2445735 . . . alleles " C G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192410.1 samtools variation 2551094 2551094 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192410.1 samtools variation 2567198 2567198 . . . alleles " A C"; frequencies " 0.31413612565445 0.68586387434555"; depth 191 ; unknown ; N/A GL192410.1 samtools variation 2766852 2766852 . . . alleles " A G"; frequencies " 0.627906976744186 0.372093023255814"; depth 43 ; known ; N/A GL192410.1 samtools variation 2913984 2913984 . . . alleles " G A"; frequencies " 0.677238805970149 0.322761194029851"; depth 536 ; unknown ; synonymous GL192410.1 samtools variation 2914129 2914129 . . . alleles " C T"; frequencies " 0.607407407407407 0.392592592592593"; depth 540 ; unknown ; N/A GL192410.1 samtools variation 2914159 2914159 . . . alleles " C T"; frequencies " 0.630769230769231 0.369230769230769"; depth 390 ; unknown ; N/A GL192410.1 samtools variation 2915137 2915137 . . . alleles " C T"; frequencies " 0.718294051627385 0.281705948372615"; depth 891 ; known ; N/A GL192410.1 samtools variation 2915161 2915161 . . . alleles " A G"; frequencies " 0.70012706480305 0.29987293519695"; depth 787 ; known ; N/A GL192410.1 samtools variation 3049264 3049264 . . . alleles " A G"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192410.1 samtools variation 3054425 3054425 . . . alleles " T C"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; synonymous GL192410.1 samtools variation 3108427 3108427 . . . alleles " A C"; frequencies " 0.62 0.38"; depth 50 ; unknown ; N/A GL192410.1 samtools variation 3109604 3109604 . . . alleles " C A"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; unknown ; N/A GL192410.1 samtools variation 3110269 3110269 . . . alleles " C T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; non-synonymous GL192411.1 samtools variation 352467 352467 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL192411.1 samtools variation 369982 369982 . . . alleles " T G"; frequencies " 0.42156862745098 0.57843137254902"; depth 204 ; unknown ; synonymous GL192411.1 samtools variation 619075 619075 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 336 ; unknown ; N/A GL192411.1 samtools variation 619222 619222 . . . alleles " T G"; frequencies " 0.220833333333333 0.779166666666667"; depth 240 ; unknown ; synonymous GL192411.1 samtools variation 619425 619425 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192411.1 samtools variation 619630 619630 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192411.1 samtools variation 619663 619663 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192411.1 samtools variation 620508 620508 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192411.1 samtools variation 620530 620530 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192411.1 samtools variation 647878 647878 . . . alleles " G A"; frequencies " 0.666192170818505 0.333807829181495"; depth 1405 ; known ; synonymous GL192411.1 samtools variation 648033 648033 . . . alleles " G C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192411.1 samtools variation 648076 648076 . . . alleles " C A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192411.1 samtools variation 1956998 1956998 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192411.1 samtools variation 2013983 2013983 . . . alleles " C G"; frequencies " 0.48 0.52"; depth 25 ; unknown ; non-synonymous GL192411.1 samtools variation 2284907 2284907 . . . alleles " T C"; frequencies " 0.418181818181818 0.581818181818182"; depth 55 ; unknown ; N/A GL192411.1 samtools variation 2285507 2285507 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192411.1 samtools variation 2288827 2288827 . . . alleles " G A"; frequencies " 0.701149425287356 0.298850574712644"; depth 87 ; unknown ; N/A GL192411.1 samtools variation 2294085 2294085 . . . alleles " C A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192411.1 samtools variation 2294516 2294516 . . . alleles " A T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192411.1 samtools variation 2295032 2295032 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192411.1 samtools variation 2461414 2461414 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192411.1 samtools variation 2465538 2465538 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192411.1 samtools variation 2466769 2466769 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192411.1 samtools variation 2467347 2467347 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 46 ; unknown ; N/A GL192411.1 samtools variation 2467445 2467445 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192411.1 samtools variation 2471276 2471276 . . . alleles " A C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192411.1 samtools variation 2475078 2475078 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192411.1 samtools variation 2477487 2477487 . . . alleles " T G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192411.1 samtools variation 2491532 2491532 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL192411.1 samtools variation 2497744 2497744 . . . alleles " A G"; frequencies " 0.577319587628866 0.422680412371134"; depth 97 ; known ; N/A GL192411.1 samtools variation 2498635 2498635 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 52 ; known ; N/A GL192411.1 samtools variation 2502698 2502698 . . . alleles " C T"; frequencies " 0.610526315789474 0.389473684210526"; depth 95 ; known ; N/A GL192411.1 samtools variation 2512477 2512477 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192412.1 samtools variation 157339 157339 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 32 ; unknown ; N/A GL192412.1 samtools variation 620107 620107 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192412.1 samtools variation 1083004 1083004 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192412.1 samtools variation 1106653 1106653 . . . alleles " C G"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192412.1 samtools variation 1119637 1119637 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; non-synonymous GL192412.1 samtools variation 1119726 1119726 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; synonymous GL192412.1 samtools variation 1120116 1120116 . . . alleles " C G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; synonymous GL192412.1 samtools variation 1196422 1196422 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 120 ; unknown ; N/A GL192412.1 samtools variation 1201884 1201884 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192412.1 samtools variation 1205291 1205291 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192412.1 samtools variation 1206892 1206892 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192412.1 samtools variation 1209325 1209325 . . . alleles " T G"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192412.1 samtools variation 1209618 1209618 . . . alleles " T C"; frequencies " 0.282051282051282 0.717948717948718"; depth 39 ; unknown ; N/A GL192412.1 samtools variation 1211186 1211186 . . . alleles " T G"; frequencies " 0.285714285714286 0.714285714285714"; depth 189 ; unknown ; N/A GL192412.1 samtools variation 1211473 1211473 . . . alleles " T C"; frequencies " 0.309090909090909 0.690909090909091"; depth 110 ; unknown ; N/A GL192412.1 samtools variation 1211669 1211669 . . . alleles " G A"; frequencies " 0.270833333333333 0.729166666666667"; depth 48 ; unknown ; N/A GL192412.1 samtools variation 1214063 1214063 . . . alleles " A G"; frequencies " 0.28 0.72"; depth 25 ; unknown ; N/A GL192412.1 samtools variation 1214148 1214148 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192412.1 samtools variation 1214185 1214185 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192412.1 samtools variation 1218810 1218810 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 65 ; unknown ; N/A GL192412.1 samtools variation 1219296 1219296 . . . alleles " C G"; frequencies " 0.722602739726027 0.277397260273973"; depth 292 ; unknown ; N/A GL192412.1 samtools variation 1219359 1219359 . . . alleles " A G"; frequencies " 0.702508960573477 0.293906810035842"; depth 279 ; unknown ; N/A GL192412.1 samtools variation 1219430 1219430 . . . alleles " T C"; frequencies " 0.357446808510638 0.642553191489362"; depth 235 ; unknown ; N/A GL192412.1 samtools variation 1219518 1219518 . . . alleles " T C"; frequencies " 0.748571428571429 0.251428571428571"; depth 175 ; unknown ; N/A GL192412.1 samtools variation 1228187 1228187 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192412.1 samtools variation 1228197 1228197 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192412.1 samtools variation 1228203 1228203 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192412.1 samtools variation 1228623 1228623 . . . alleles " G A"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; unknown ; N/A GL192412.1 samtools variation 1231262 1231262 . . . alleles " C T"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; N/A GL192412.1 samtools variation 1231270 1231270 . . . alleles " A G"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL192412.1 samtools variation 1233043 1233043 . . . alleles " A G"; frequencies " 0.644736842105263 0.355263157894737"; depth 76 ; unknown ; synonymous GL192412.1 samtools variation 1234112 1234112 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192412.1 samtools variation 1234137 1234137 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192412.1 samtools variation 1248346 1248346 . . . alleles " G A"; frequencies " 0.76 0.2"; depth 25 ; unknown ; synonymous GL192412.1 samtools variation 1645026 1645026 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192412.1 samtools variation 1645052 1645052 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192412.1 samtools variation 1765636 1765636 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192412.1 samtools variation 1803793 1803793 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192412.1 samtools variation 2125178 2125178 . . . alleles " A G"; frequencies " 0.408345752608048 0.591654247391952"; depth 671 ; unknown ; non-synonymous GL192412.1 samtools variation 2201198 2201198 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192412.1 samtools variation 2234453 2234453 . . . alleles " G T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192412.1 samtools variation 2248815 2248815 . . . alleles " C G"; frequencies " 0.377376425855513 0.622623574144487"; depth 1052 ; unknown ; synonymous GL192412.1 samtools variation 2275333 2275333 . . . alleles " C A"; frequencies " 0.666934189406099 0.333065810593901"; depth 1246 ; unknown ; N/A GL192412.1 samtools variation 2275479 2275479 . . . alleles " A G"; frequencies " 0.692890995260664 0.307109004739336"; depth 1055 ; unknown ; N/A GL192412.1 samtools variation 2682794 2682794 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192413.1 samtools variation 373144 373144 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192413.1 samtools variation 544385 544385 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192413.1 samtools variation 588923 588923 . . . alleles " G A"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; known ; synonymous GL192413.1 samtools variation 591158 591158 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL192413.1 samtools variation 591480 591480 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192413.1 samtools variation 591696 591696 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192413.1 samtools variation 637300 637300 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; non-synonymous GL192413.1 samtools variation 637783 637783 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192413.1 samtools variation 639447 639447 . . . alleles " G A"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; known ; N/A GL192413.1 samtools variation 639462 639462 . . . alleles " C A"; frequencies " 0.652173913043478 0.347826086956522"; depth 46 ; unknown ; N/A GL192413.1 samtools variation 867273 867273 . . . alleles " A G"; frequencies " 0.297297297297297 0.702702702702703"; depth 37 ; known ; N/A GL192413.1 samtools variation 867425 867425 . . . alleles " A G"; frequencies " 0.467532467532468 0.532467532467532"; depth 77 ; known ; synonymous GL192413.1 samtools variation 880821 880821 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192413.1 samtools variation 886019 886019 . . . alleles " A G"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL192413.1 samtools variation 887043 887043 . . . alleles " G A"; frequencies " 0.581395348837209 0.418604651162791"; depth 43 ; known ; N/A GL192413.1 samtools variation 887112 887112 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192413.1 samtools variation 888196 888196 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192413.1 samtools variation 889128 889128 . . . alleles " C T"; frequencies " 0.32404181184669 0.67595818815331"; depth 574 ; known ; synonymous GL192413.1 samtools variation 984623 984623 . . . alleles " C T"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; known ; N/A GL192413.1 samtools variation 991901 991901 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192413.1 samtools variation 995202 995202 . . . alleles " C T"; frequencies " 0.782258064516129 0.217741935483871"; depth 124 ; unknown ; synonymous GL192413.1 samtools variation 1014224 1014224 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192413.1 samtools variation 1027775 1027775 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192413.1 samtools variation 1029747 1029747 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL192413.1 samtools variation 1031026 1031026 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192413.1 samtools variation 1206644 1206644 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192413.1 samtools variation 1495468 1495468 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192413.1 samtools variation 1495470 1495470 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192413.1 samtools variation 1495652 1495652 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192413.1 samtools variation 2502446 2502446 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 66 ; unknown ; N/A GL192414.1 samtools variation 11581 11581 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192414.1 samtools variation 54534 54534 . . . alleles " T G"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL192414.1 samtools variation 513385 513385 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 46 ; known ; N/A GL192414.1 samtools variation 514614 514614 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192414.1 samtools variation 515056 515056 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL192414.1 samtools variation 533263 533263 . . . alleles " A G"; frequencies " 0.341463414634146 0.658536585365854"; depth 41 ; known ; N/A GL192414.1 samtools variation 538849 538849 . . . alleles " T C"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL192414.1 samtools variation 540773 540773 . . . alleles " G A"; frequencies " 0.620689655172414 0.379310344827586"; depth 232 ; unknown ; synonymous GL192414.1 samtools variation 571096 571096 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192414.1 samtools variation 576193 576193 . . . alleles " G T"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; synonymous GL192414.1 samtools variation 611712 611712 . . . alleles " A C"; frequencies " 0.796019900497512 0.203980099502488"; depth 201 ; unknown ; N/A GL192414.1 samtools variation 2127298 2127298 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; synonymous GL192414.1 samtools variation 2165721 2165721 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; synonymous GL192414.1 samtools variation 2166527 2166527 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 56 ; unknown ; N/A GL192414.1 samtools variation 2178435 2178435 . . . alleles " G A"; frequencies " 0.290322580645161 0.709677419354839"; depth 62 ; unknown ; N/A GL192414.1 samtools variation 2178444 2178444 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 48 ; unknown ; N/A GL192414.1 samtools variation 2178975 2178975 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192414.1 samtools variation 2179118 2179118 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192414.1 samtools variation 2179269 2179269 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; synonymous GL192414.1 samtools variation 2183531 2183531 . . . alleles " T A"; frequencies " 0.56 0.44"; depth 25 ; unknown ; synonymous GL192414.1 samtools variation 2749057 2749057 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; non-synonymous GL192414.1 samtools variation 2749119 2749119 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; non-synonymous GL192414.1 samtools variation 2768510 2768510 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL192414.1 samtools variation 2774636 2774636 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192414.1 samtools variation 2997991 2997991 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 144 ; known ; N/A GL192414.1 samtools variation 2998247 2998247 . . . alleles " G A"; frequencies " 0.688679245283019 0.311320754716981"; depth 106 ; known ; N/A GL192414.1 samtools variation 3062712 3062712 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192414.1 samtools variation 3069096 3069096 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; synonymous GL192415.1 samtools variation 701395 701395 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; non-synonymous GL192415.1 samtools variation 1224834 1224834 . . . alleles " C G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192415.1 samtools variation 1568824 1568824 . . . alleles " C T"; frequencies " 0.735849056603774 0.264150943396226"; depth 53 ; unknown ; non-synonymous GL192415.1 samtools variation 1568914 1568914 . . . alleles " A G"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; non-synonymous GL192415.1 samtools variation 1570299 1570299 . . . alleles " A T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; non-synonymous GL192415.1 samtools variation 1582672 1582672 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 30 ; known ; N/A GL192415.1 samtools variation 1585084 1585084 . . . alleles " C T"; frequencies " 0.456273764258555 0.543726235741445"; depth 263 ; unknown ; N/A GL192415.1 samtools variation 1591720 1591720 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192415.1 samtools variation 1595788 1595788 . . . alleles " A G"; frequencies " 0.510582010582011 0.489417989417989"; depth 378 ; unknown ; synonymous GL192415.1 samtools variation 1605646 1605646 . . . alleles " T G"; frequencies " 0.735135135135135 0.264864864864865"; depth 185 ; unknown ; synonymous GL192415.1 samtools variation 1821480 1821480 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192415.1 samtools variation 1825551 1825551 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192415.1 samtools variation 1825830 1825830 . . . alleles " G C"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; known ; N/A GL192415.1 samtools variation 1843577 1843577 . . . alleles " A G"; frequencies " 0.323943661971831 0.676056338028169"; depth 71 ; known ; synonymous GL192415.1 samtools variation 1851214 1851214 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192415.1 samtools variation 1869127 1869127 . . . alleles " G A"; frequencies " 0.485294117647059 0.514705882352941"; depth 136 ; unknown ; synonymous GL192415.1 samtools variation 1906033 1906033 . . . alleles " G A"; frequencies " 0.584745762711864 0.415254237288136"; depth 118 ; known ; synonymous GL192415.1 samtools variation 1957172 1957172 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192415.1 samtools variation 2212796 2212796 . . . alleles " C T"; frequencies " 0.606060606060606 0.393939393939394"; depth 66 ; known ; non-synonymous GL192415.1 samtools variation 2307967 2307967 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192415.1 samtools variation 2320597 2320597 . . . alleles " A C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192415.1 samtools variation 2320629 2320629 . . . alleles " C G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192415.1 samtools variation 2327539 2327539 . . . alleles " G A"; frequencies " 0.28125 0.71875"; depth 32 ; known ; N/A GL192415.1 samtools variation 2329081 2329081 . . . alleles " T C"; frequencies " 0.404166666666667 0.595833333333333"; depth 240 ; known ; non-synonymous GL192415.1 samtools variation 2329575 2329575 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192415.1 samtools variation 2330174 2330174 . . . alleles " C T"; frequencies " 0.597560975609756 0.402439024390244"; depth 164 ; known ; N/A GL192415.1 samtools variation 2330203 2330203 . . . alleles " T C"; frequencies " 0.385964912280702 0.614035087719298"; depth 285 ; known ; N/A GL192415.1 samtools variation 2330559 2330559 . . . alleles " C G"; frequencies " 0.426356589147287 0.573643410852713"; depth 129 ; unknown ; N/A GL192415.1 samtools variation 2331844 2331844 . . . alleles " A T"; frequencies " 0.444444444444444 0.555555555555556"; depth 45 ; unknown ; N/A GL192415.1 samtools variation 2331900 2331900 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 63 ; unknown ; N/A GL192415.1 samtools variation 2333059 2333059 . . . alleles " C A"; frequencies " 0.227272727272727 0.772727272727273"; depth 154 ; known ; N/A GL192415.1 samtools variation 2333325 2333325 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192415.1 samtools variation 2333366 2333366 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL192415.1 samtools variation 2334553 2334553 . . . alleles " C T"; frequencies " 0.691588785046729 0.308411214953271"; depth 107 ; known ; N/A GL192415.1 samtools variation 2335949 2335949 . . . alleles " A G"; frequencies " 0.735632183908046 0.264367816091954"; depth 87 ; known ; N/A GL192415.1 samtools variation 2336009 2336009 . . . alleles " G T"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; known ; N/A GL192415.1 samtools variation 2336647 2336647 . . . alleles " C G"; frequencies " 0.27 0.73"; depth 100 ; known ; N/A GL192415.1 samtools variation 2337355 2337355 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; known ; N/A GL192415.1 samtools variation 2344085 2344085 . . . alleles " C T"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; unknown ; N/A GL192415.1 samtools variation 2346861 2346861 . . . alleles " G T"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; N/A GL192415.1 samtools variation 2348367 2348367 . . . alleles " A C"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; known ; N/A GL192415.1 samtools variation 2353476 2353476 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192415.1 samtools variation 2354128 2354128 . . . alleles " A C"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; known ; N/A GL192415.1 samtools variation 2354318 2354318 . . . alleles " C T"; frequencies " 0.487179487179487 0.512820512820513"; depth 39 ; unknown ; N/A GL192415.1 samtools variation 2354327 2354327 . . . alleles " G A"; frequencies " 0.472222222222222 0.527777777777778"; depth 36 ; known ; N/A GL192415.1 samtools variation 2355165 2355165 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192415.1 samtools variation 2356319 2356319 . . . alleles " G T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192415.1 samtools variation 2358980 2358980 . . . alleles " C T"; frequencies " 0.693333333333333 0.306666666666667"; depth 75 ; known ; N/A GL192415.1 samtools variation 2359066 2359066 . . . alleles " C T"; frequencies " 0.723076923076923 0.276923076923077"; depth 65 ; known ; N/A GL192415.1 samtools variation 2361544 2361544 . . . alleles " C A"; frequencies " 0.254385964912281 0.745614035087719"; depth 114 ; known ; N/A GL192415.1 samtools variation 2362130 2362130 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 40 ; known ; N/A GL192415.1 samtools variation 2362682 2362682 . . . alleles " T G"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192415.1 samtools variation 2362822 2362822 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192416.1 samtools variation 335199 335199 . . . alleles " A G"; frequencies " 0.697674418604651 0.302325581395349"; depth 86 ; unknown ; N/A GL192416.1 samtools variation 335437 335437 . . . alleles " C G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192416.1 samtools variation 336753 336753 . . . alleles " C G"; frequencies " 0.695238095238095 0.304761904761905"; depth 105 ; unknown ; N/A GL192416.1 samtools variation 336794 336794 . . . alleles " T C"; frequencies " 0.693069306930693 0.306930693069307"; depth 101 ; unknown ; N/A GL192416.1 samtools variation 351386 351386 . . . alleles " G A"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; synonymous GL192416.1 samtools variation 356921 356921 . . . alleles " C T"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; synonymous GL192416.1 samtools variation 357441 357441 . . . alleles " C A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192416.1 samtools variation 1312424 1312424 . . . alleles " C T"; frequencies " 0.560240963855422 0.439759036144578"; depth 166 ; known ; N/A GL192416.1 samtools variation 1312700 1312700 . . . alleles " A C"; frequencies " 0.266666666666667 0.733333333333333"; depth 60 ; known ; N/A GL192416.1 samtools variation 1328067 1328067 . . . alleles " A G"; frequencies " 0.484210526315789 0.515789473684211"; depth 95 ; known ; synonymous GL192416.1 samtools variation 1328304 1328304 . . . alleles " G A"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; known ; synonymous GL192416.1 samtools variation 1328373 1328373 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 50 ; known ; synonymous GL192416.1 samtools variation 1328479 1328479 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; unknown ; non-synonymous GL192416.1 samtools variation 1328480 1328480 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; unknown ; N/A GL192416.1 samtools variation 1328904 1328904 . . . alleles " G A"; frequencies " 0.463235294117647 0.536764705882353"; depth 136 ; known ; synonymous GL192416.1 samtools variation 1328910 1328910 . . . alleles " G A"; frequencies " 0.447619047619048 0.552380952380952"; depth 105 ; known ; synonymous GL192416.1 samtools variation 1348903 1348903 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 68 ; known ; synonymous GL192416.1 samtools variation 1348930 1348930 . . . alleles " A G"; frequencies " 0.410958904109589 0.589041095890411"; depth 73 ; known ; synonymous GL192416.1 samtools variation 2300237 2300237 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192416.1 samtools variation 2316890 2316890 . . . alleles " C A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192416.1 samtools variation 2318482 2318482 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192416.1 samtools variation 2323534 2323534 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192416.1 samtools variation 2325603 2325603 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192416.1 samtools variation 2345798 2345798 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192416.1 samtools variation 2346712 2346712 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192416.1 samtools variation 2417332 2417332 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192416.1 samtools variation 2418101 2418101 . . . alleles " C T"; frequencies " 0.771276595744681 0.228723404255319"; depth 188 ; unknown ; synonymous GL192416.1 samtools variation 2421962 2421962 . . . alleles " C T"; frequencies " 0.489795918367347 0.510204081632653"; depth 49 ; unknown ; N/A GL192416.1 samtools variation 2421977 2421977 . . . alleles " T C"; frequencies " 0.478260869565217 0.521739130434783"; depth 46 ; unknown ; N/A GL192416.1 samtools variation 2422699 2422699 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192416.1 samtools variation 2422858 2422858 . . . alleles " T C"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL192416.1 samtools variation 2423648 2423648 . . . alleles " T G"; frequencies " 0.394736842105263 0.605263157894737"; depth 38 ; unknown ; N/A GL192416.1 samtools variation 2425041 2425041 . . . alleles " A C"; frequencies " 0.357142857142857 0.642857142857143"; depth 84 ; unknown ; N/A GL192416.1 samtools variation 2425302 2425302 . . . alleles " T A"; frequencies " 0.314285714285714 0.685714285714286"; depth 105 ; unknown ; N/A GL192416.1 samtools variation 2426007 2426007 . . . alleles " T C"; frequencies " 0.298611111111111 0.701388888888889"; depth 144 ; unknown ; N/A GL192416.1 samtools variation 2426084 2426084 . . . alleles " C T"; frequencies " 0.492890995260663 0.507109004739337"; depth 211 ; unknown ; N/A GL192416.1 samtools variation 2426500 2426500 . . . alleles " C G"; frequencies " 0.338983050847458 0.661016949152542"; depth 59 ; unknown ; N/A GL192416.1 samtools variation 2426800 2426800 . . . alleles " C A"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192416.1 samtools variation 2428813 2428813 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192416.1 samtools variation 2428872 2428872 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192416.1 samtools variation 2431023 2431023 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192416.1 samtools variation 2431698 2431698 . . . alleles " C A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192416.1 samtools variation 2431926 2431926 . . . alleles " G T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192416.1 samtools variation 2432968 2432968 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 98 ; unknown ; N/A GL192416.1 samtools variation 2433579 2433579 . . . alleles " T C"; frequencies " 0.418367346938776 0.581632653061224"; depth 98 ; unknown ; N/A GL192416.1 samtools variation 2434931 2434931 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL192416.1 samtools variation 2435267 2435267 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192416.1 samtools variation 2435758 2435758 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192416.1 samtools variation 2437112 2437112 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192416.1 samtools variation 2437197 2437197 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192416.1 samtools variation 2437570 2437570 . . . alleles " A G"; frequencies " 0.210526315789474 0.789473684210526"; depth 57 ; unknown ; N/A GL192416.1 samtools variation 2437630 2437630 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 65 ; unknown ; N/A GL192416.1 samtools variation 2437654 2437654 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 39 ; unknown ; N/A GL192416.1 samtools variation 2438461 2438461 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192416.1 samtools variation 2438715 2438715 . . . alleles " G A"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192416.1 samtools variation 2439037 2439037 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192416.1 samtools variation 2439529 2439529 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 30 ; unknown ; N/A GL192416.1 samtools variation 2439870 2439870 . . . alleles " T G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192416.1 samtools variation 2439956 2439956 . . . alleles " T G"; frequencies " 0.325581395348837 0.674418604651163"; depth 43 ; unknown ; N/A GL192416.1 samtools variation 2439998 2439998 . . . alleles " G A"; frequencies " 0.771929824561403 0.228070175438596"; depth 57 ; unknown ; N/A GL192416.1 samtools variation 2440150 2440150 . . . alleles " A G"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL192416.1 samtools variation 2440261 2440261 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192416.1 samtools variation 2440685 2440685 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; N/A GL192416.1 samtools variation 2441169 2441169 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192416.1 samtools variation 2441508 2441508 . . . alleles " T C"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; N/A GL192416.1 samtools variation 2441575 2441575 . . . alleles " A G"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; unknown ; N/A GL192416.1 samtools variation 2441922 2441922 . . . alleles " A G"; frequencies " 0.385964912280702 0.614035087719298"; depth 57 ; unknown ; N/A GL192416.1 samtools variation 2442604 2442604 . . . alleles " A G"; frequencies " 0.489130434782609 0.510869565217391"; depth 92 ; unknown ; N/A GL192416.1 samtools variation 2443035 2443035 . . . alleles " C T"; frequencies " 0.514851485148515 0.485148514851485"; depth 101 ; unknown ; N/A GL192416.1 samtools variation 2443178 2443178 . . . alleles " T C"; frequencies " 0.52112676056338 0.47887323943662"; depth 71 ; unknown ; N/A GL192416.1 samtools variation 2443218 2443218 . . . alleles " G C"; frequencies " 0.589041095890411 0.410958904109589"; depth 73 ; unknown ; N/A GL192416.1 samtools variation 2443374 2443374 . . . alleles " T A"; frequencies " 0.369565217391304 0.630434782608696"; depth 46 ; unknown ; N/A GL192416.1 samtools variation 2444825 2444825 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192416.1 samtools variation 2444861 2444861 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192416.1 samtools variation 2446542 2446542 . . . alleles " G A"; frequencies " 0.408163265306122 0.591836734693878"; depth 49 ; unknown ; N/A GL192416.1 samtools variation 2446961 2446961 . . . alleles " G A"; frequencies " 0.459459459459459 0.540540540540541"; depth 37 ; unknown ; N/A GL192416.1 samtools variation 2447046 2447046 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 35 ; unknown ; N/A GL192416.1 samtools variation 2449064 2449064 . . . alleles " C T"; frequencies " 0.365019011406844 0.631178707224335"; depth 263 ; unknown ; synonymous GL192416.1 samtools variation 2449134 2449134 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 85 ; unknown ; non-synonymous GL192416.1 samtools variation 2449413 2449413 . . . alleles " A G"; frequencies " 0.314516129032258 0.685483870967742"; depth 124 ; unknown ; non-synonymous GL192416.1 samtools variation 2450613 2450613 . . . alleles " G A"; frequencies " 0.623762376237624 0.376237623762376"; depth 101 ; unknown ; non-synonymous GL192416.1 samtools variation 2451239 2451239 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 63 ; unknown ; N/A GL192416.1 samtools variation 2451250 2451250 . . . alleles " G A"; frequencies " 0.639344262295082 0.360655737704918"; depth 61 ; unknown ; N/A GL192416.1 samtools variation 2451287 2451287 . . . alleles " A G"; frequencies " 0.576271186440678 0.423728813559322"; depth 59 ; unknown ; N/A GL192416.1 samtools variation 2452178 2452178 . . . alleles " G A"; frequencies " 0.313868613138686 0.686131386861314"; depth 137 ; unknown ; N/A GL192416.1 samtools variation 2452469 2452469 . . . alleles " T A"; frequencies " 0.351351351351351 0.648648648648649"; depth 111 ; unknown ; N/A GL192416.1 samtools variation 2452470 2452470 . . . alleles " C A"; frequencies " 0.351351351351351 0.648648648648649"; depth 111 ; unknown ; N/A GL192416.1 samtools variation 2455197 2455197 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL192416.1 samtools variation 2455520 2455520 . . . alleles " C T"; frequencies " 0.346938775510204 0.653061224489796"; depth 49 ; unknown ; N/A GL192416.1 samtools variation 2455679 2455679 . . . alleles " T A"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; N/A GL192416.1 samtools variation 2458223 2458223 . . . alleles " T C"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL192416.1 samtools variation 3039849 3039849 . . . alleles " C G"; frequencies " 0.416666666666667 0.541666666666667"; depth 24 ; known ; N/A GL192416.1 samtools variation 3042076 3042076 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192416.1 samtools variation 3047125 3047125 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; non-synonymous GL192417.1 samtools variation 96461 96461 . . . alleles " T G"; frequencies " 0.257777777777778 0.742222222222222"; depth 450 ; unknown ; synonymous GL192417.1 samtools variation 99104 99104 . . . alleles " C T"; frequencies " 0.653710247349823 0.346289752650177"; depth 283 ; known ; synonymous GL192417.1 samtools variation 100803 100803 . . . alleles " G C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192417.1 samtools variation 102377 102377 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192417.1 samtools variation 137823 137823 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; synonymous GL192417.1 samtools variation 156440 156440 . . . alleles " A C"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; known ; non-synonymous GL192417.1 samtools variation 248534 248534 . . . alleles " C T"; frequencies " 0.414634146341463 0.585365853658537"; depth 41 ; unknown ; N/A GL192417.1 samtools variation 248878 248878 . . . alleles " G T"; frequencies " 0.44 0.56"; depth 50 ; known ; N/A GL192417.1 samtools variation 273101 273101 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192417.1 samtools variation 276702 276702 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL192417.1 samtools variation 298254 298254 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192417.1 samtools variation 298297 298297 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192417.1 samtools variation 303335 303335 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192417.1 samtools variation 306095 306095 . . . alleles " C T"; frequencies " 0.788732394366197 0.211267605633803"; depth 71 ; unknown ; N/A GL192417.1 samtools variation 308552 308552 . . . alleles " A G"; frequencies " 0.245283018867925 0.754716981132076"; depth 53 ; known ; N/A GL192417.1 samtools variation 308881 308881 . . . alleles " C T"; frequencies " 0.784810126582278 0.215189873417722"; depth 79 ; unknown ; N/A GL192417.1 samtools variation 310031 310031 . . . alleles " G A"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; unknown ; N/A GL192417.1 samtools variation 310676 310676 . . . alleles " G A"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL192417.1 samtools variation 312738 312738 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192417.1 samtools variation 314587 314587 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; non-synonymous GL192417.1 samtools variation 409988 409988 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192417.1 samtools variation 410146 410146 . . . alleles " G A"; frequencies " 0.755102040816326 0.244897959183673"; depth 49 ; unknown ; N/A GL192417.1 samtools variation 519244 519244 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 40 ; unknown ; synonymous GL192417.1 samtools variation 520416 520416 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; non-synonymous GL192417.1 samtools variation 554621 554621 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; non-synonymous GL192417.1 samtools variation 689803 689803 . . . alleles " G T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192417.1 samtools variation 830004 830004 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192417.1 samtools variation 835739 835739 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192417.1 samtools variation 847885 847885 . . . alleles " C T"; frequencies " 0.67948717948718 0.320512820512821"; depth 78 ; unknown ; synonymous GL192417.1 samtools variation 997539 997539 . . . alleles " T A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192417.1 samtools variation 1000375 1000375 . . . alleles " G T"; frequencies " 0.603174603174603 0.396825396825397"; depth 189 ; unknown ; synonymous GL192417.1 samtools variation 1003633 1003633 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192417.1 samtools variation 1004342 1004342 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192417.1 samtools variation 1222128 1222128 . . . alleles " T C"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL192417.1 samtools variation 1237392 1237392 . . . alleles " C T"; frequencies " 0.697802197802198 0.302197802197802"; depth 182 ; unknown ; non-synonymous GL192417.1 samtools variation 1427084 1427084 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192417.1 samtools variation 1427150 1427150 . . . alleles " A G"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL192417.1 samtools variation 1469023 1469023 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192417.1 samtools variation 1480228 1480228 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 42 ; unknown ; N/A GL192417.1 samtools variation 1480274 1480274 . . . alleles " G T"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL192417.1 samtools variation 1480406 1480406 . . . alleles " A T"; frequencies " 0.619047619047619 0.333333333333333"; depth 21 ; unknown ; N/A GL192417.1 samtools variation 1480407 1480407 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192417.1 samtools variation 1548113 1548113 . . . alleles " T C"; frequencies " 0.208333333333333 0.791666666666667"; depth 48 ; unknown ; N/A GL192417.1 samtools variation 1549564 1549564 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192417.1 samtools variation 1549727 1549727 . . . alleles " C T"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; unknown ; N/A GL192417.1 samtools variation 1549931 1549931 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; unknown ; N/A GL192417.1 samtools variation 1550002 1550002 . . . alleles " T C"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192417.1 samtools variation 1616235 1616235 . . . alleles " T A"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; unknown ; N/A GL192417.1 samtools variation 1618347 1618347 . . . alleles " G A"; frequencies " 0.678260869565217 0.321739130434783"; depth 115 ; unknown ; N/A GL192417.1 samtools variation 1624785 1624785 . . . alleles " C T"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; non-synonymous GL192417.1 samtools variation 1647969 1647969 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192417.1 samtools variation 1648751 1648751 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192417.1 samtools variation 1726108 1726108 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192417.1 samtools variation 1867809 1867809 . . . alleles " A T"; frequencies " 0.684210526315789 0.315789473684211"; depth 76 ; unknown ; N/A GL192417.1 samtools variation 1995448 1995448 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192418.1 samtools variation 505134 505134 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192418.1 samtools variation 515877 515877 . . . alleles " G A"; frequencies " 0.753894080996885 0.246105919003115"; depth 321 ; unknown ; non-synonymous GL192418.1 samtools variation 517029 517029 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192418.1 samtools variation 524182 524182 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192418.1 samtools variation 524826 524826 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192418.1 samtools variation 536376 536376 . . . alleles " T G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192418.1 samtools variation 564422 564422 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192418.1 samtools variation 779117 779117 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192418.1 samtools variation 825564 825564 . . . alleles " G A"; frequencies " 0.330645161290323 0.669354838709677"; depth 124 ; known ; synonymous GL192418.1 samtools variation 858988 858988 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192418.1 samtools variation 864411 864411 . . . alleles " G C"; frequencies " 0.255434782608696 0.744565217391304"; depth 184 ; unknown ; non-synonymous GL192418.1 samtools variation 918183 918183 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192418.1 samtools variation 926806 926806 . . . alleles " G C"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; unknown ; N/A GL192418.1 samtools variation 926900 926900 . . . alleles " G A"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; known ; N/A GL192418.1 samtools variation 948694 948694 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL192418.1 samtools variation 957676 957676 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192418.1 samtools variation 978911 978911 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192418.1 samtools variation 1025231 1025231 . . . alleles " C G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL192418.1 samtools variation 1025352 1025352 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 40 ; known ; N/A GL192418.1 samtools variation 1030133 1030133 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192418.1 samtools variation 1172898 1172898 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192418.1 samtools variation 1178801 1178801 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192418.1 samtools variation 1178854 1178854 . . . alleles " A G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192418.1 samtools variation 1179420 1179420 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 50 ; known ; N/A GL192418.1 samtools variation 1179602 1179602 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 104 ; known ; N/A GL192418.1 samtools variation 1179857 1179857 . . . alleles " G A"; frequencies " 0.658227848101266 0.341772151898734"; depth 79 ; unknown ; N/A GL192418.1 samtools variation 1182006 1182006 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192418.1 samtools variation 1204069 1204069 . . . alleles " T C"; frequencies " 0.72 0.28"; depth 25 ; known ; N/A GL192418.1 samtools variation 1204130 1204130 . . . alleles " A G"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; known ; N/A GL192418.1 samtools variation 1204352 1204352 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192418.1 samtools variation 1204553 1204553 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192418.1 samtools variation 1214082 1214082 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192418.1 samtools variation 1214554 1214554 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192418.1 samtools variation 1217868 1217868 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192418.1 samtools variation 1218527 1218527 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192418.1 samtools variation 1219287 1219287 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192418.1 samtools variation 1231968 1231968 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192418.1 samtools variation 1238796 1238796 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192418.1 samtools variation 1251287 1251287 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192418.1 samtools variation 1251938 1251938 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192418.1 samtools variation 1267504 1267504 . . . alleles " C A"; frequencies " 0.238095238095238 0.761904761904762"; depth 147 ; unknown ; N/A GL192418.1 samtools variation 2799090 2799090 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192419.1 samtools variation 1175694 1175694 . . . alleles " C T"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; N/A GL192419.1 samtools variation 1221631 1221631 . . . alleles " C T"; frequencies " 0.530612244897959 0.469387755102041"; depth 98 ; unknown ; N/A GL192419.1 samtools variation 1362141 1362141 . . . alleles " G A"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; known ; N/A GL192419.1 samtools variation 1934927 1934927 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192419.1 samtools variation 1938740 1938740 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192419.1 samtools variation 1939155 1939155 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192419.1 samtools variation 2165725 2165725 . . . alleles " C T"; frequencies " 0.716417910447761 0.283582089552239"; depth 67 ; unknown ; N/A GL192419.1 samtools variation 2166389 2166389 . . . alleles " A T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192419.1 samtools variation 2167739 2167739 . . . alleles " A G"; frequencies " 0.716666666666667 0.283333333333333"; depth 60 ; unknown ; N/A GL192420.1 samtools variation 1222611 1222611 . . . alleles " C T"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192420.1 samtools variation 1223653 1223653 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192420.1 samtools variation 1314562 1314562 . . . alleles " T C"; frequencies " 0.578313253012048 0.421686746987952"; depth 83 ; unknown ; N/A GL192420.1 samtools variation 1318060 1318060 . . . alleles " T A"; frequencies " 0.76 0.24"; depth 50 ; unknown ; N/A GL192420.1 samtools variation 1318220 1318220 . . . alleles " C T"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192420.1 samtools variation 1329003 1329003 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; synonymous GL192420.1 samtools variation 1433383 1433383 . . . alleles " A G"; frequencies " 0.638888888888889 0.361111111111111"; depth 72 ; unknown ; N/A GL192420.1 samtools variation 1435364 1435364 . . . alleles " C G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192420.1 samtools variation 1553515 1553515 . . . alleles " T C"; frequencies " 0.465116279069767 0.534883720930233"; depth 86 ; known ; N/A GL192420.1 samtools variation 1553522 1553522 . . . alleles " A C"; frequencies " 0.444444444444444 0.555555555555556"; depth 90 ; known ; N/A GL192420.1 samtools variation 1553639 1553639 . . . alleles " T C"; frequencies " 0.604938271604938 0.395061728395062"; depth 81 ; known ; N/A GL192420.1 samtools variation 1553785 1553785 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192420.1 samtools variation 1553798 1553798 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192420.1 samtools variation 1554772 1554772 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192420.1 samtools variation 1563494 1563494 . . . alleles " G A"; frequencies " 0.569620253164557 0.430379746835443"; depth 79 ; known ; N/A GL192420.1 samtools variation 1563838 1563838 . . . alleles " C A"; frequencies " 0.575 0.425"; depth 40 ; known ; N/A GL192420.1 samtools variation 1563868 1563868 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL192420.1 samtools variation 1564368 1564368 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 74 ; known ; N/A GL192420.1 samtools variation 1565673 1565673 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 51 ; known ; N/A GL192420.1 samtools variation 1565716 1565716 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; known ; N/A GL192420.1 samtools variation 1565793 1565793 . . . alleles " G A"; frequencies " 0.686274509803922 0.313725490196078"; depth 51 ; known ; N/A GL192420.1 samtools variation 1566069 1566069 . . . alleles " T G"; frequencies " 0.481481481481481 0.518518518518518"; depth 54 ; known ; N/A GL192420.1 samtools variation 1569096 1569096 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192420.1 samtools variation 1569101 1569101 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192420.1 samtools variation 1569122 1569122 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192420.1 samtools variation 1571180 1571180 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192420.1 samtools variation 1575901 1575901 . . . alleles " G A"; frequencies " 0.59 0.41"; depth 100 ; known ; non-synonymous GL192420.1 samtools variation 1585772 1585772 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192420.1 samtools variation 1598185 1598185 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192420.1 samtools variation 1598202 1598202 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192420.1 samtools variation 1607090 1607090 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL192420.1 samtools variation 1653505 1653505 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192420.1 samtools variation 1655292 1655292 . . . alleles " G C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192420.1 samtools variation 1681486 1681486 . . . alleles " A G"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; known ; N/A GL192420.1 samtools variation 1681869 1681869 . . . alleles " G T"; frequencies " 0.396825396825397 0.603174603174603"; depth 63 ; known ; N/A GL192420.1 samtools variation 1681921 1681921 . . . alleles " T C"; frequencies " 0.301652892561983 0.698347107438017"; depth 242 ; known ; N/A GL192420.1 samtools variation 1682065 1682065 . . . alleles " G A"; frequencies " 0.338582677165354 0.661417322834646"; depth 127 ; known ; N/A GL192420.1 samtools variation 1682861 1682861 . . . alleles " G C"; frequencies " 0.792207792207792 0.207792207792208"; depth 154 ; known ; N/A GL192420.1 samtools variation 1683075 1683075 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 126 ; known ; N/A GL192420.1 samtools variation 1683161 1683161 . . . alleles " A G"; frequencies " 0.702898550724638 0.297101449275362"; depth 138 ; unknown ; N/A GL192420.1 samtools variation 1683188 1683188 . . . alleles " T G"; frequencies " 0.325714285714286 0.674285714285714"; depth 175 ; known ; N/A GL192420.1 samtools variation 1684053 1684053 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 100 ; known ; N/A GL192420.1 samtools variation 1684092 1684092 . . . alleles " C T"; frequencies " 0.678571428571429 0.321428571428571"; depth 84 ; unknown ; N/A GL192420.1 samtools variation 1684094 1684094 . . . alleles " C T"; frequencies " 0.341176470588235 0.658823529411765"; depth 85 ; known ; N/A GL192420.1 samtools variation 1684136 1684136 . . . alleles " C T"; frequencies " 0.25609756097561 0.74390243902439"; depth 82 ; known ; N/A GL192420.1 samtools variation 1685017 1685017 . . . alleles " C T"; frequencies " 0.784615384615385 0.215384615384615"; depth 130 ; known ; N/A GL192420.1 samtools variation 1688218 1688218 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 102 ; unknown ; N/A GL192420.1 samtools variation 1695727 1695727 . . . alleles " A G"; frequencies " 0.30188679245283 0.69811320754717"; depth 53 ; known ; N/A GL192420.1 samtools variation 1695871 1695871 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; known ; N/A GL192420.1 samtools variation 1696695 1696695 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; known ; N/A GL192420.1 samtools variation 1697263 1697263 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192420.1 samtools variation 1706181 1706181 . . . alleles " A G"; frequencies " 0.367231638418079 0.632768361581921"; depth 177 ; known ; synonymous GL192420.1 samtools variation 1780580 1780580 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 525 ; known ; N/A GL192420.1 samtools variation 1787756 1787756 . . . alleles " C T"; frequencies " 0.568027210884354 0.430272108843537"; depth 588 ; unknown ; synonymous GL192420.1 samtools variation 1940994 1940994 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL192420.1 samtools variation 2047407 2047407 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; synonymous GL192420.1 samtools variation 2188025 2188025 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192420.1 samtools variation 2238028 2238028 . . . alleles " C T"; frequencies " 0.208053691275168 0.791946308724832"; depth 149 ; unknown ; synonymous GL192420.1 samtools variation 2432145 2432145 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL192420.1 samtools variation 2432832 2432832 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192420.1 samtools variation 2432939 2432939 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192420.1 samtools variation 2449810 2449810 . . . alleles " A G"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; N/A GL192420.1 samtools variation 2451900 2451900 . . . alleles " A G"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192420.1 samtools variation 2529534 2529534 . . . alleles " A C"; frequencies " 0.618181818181818 0.381818181818182"; depth 55 ; known ; N/A GL192420.1 samtools variation 2529620 2529620 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; N/A GL192420.1 samtools variation 2598917 2598917 . . . alleles " G C"; frequencies " 0.606060606060606 0.393939393939394"; depth 132 ; known ; N/A GL192420.1 samtools variation 2781024 2781024 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192420.1 samtools variation 2854479 2854479 . . . alleles " G A"; frequencies " 0.510526315789474 0.489473684210526"; depth 380 ; unknown ; synonymous GL192420.1 samtools variation 2855759 2855759 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192420.1 samtools variation 2856156 2856156 . . . alleles " G T"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL192420.1 samtools variation 2861872 2861872 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 25 ; known ; N/A GL192420.1 samtools variation 2874918 2874918 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192420.1 samtools variation 2882209 2882209 . . . alleles " A G"; frequencies " 0.447191011235955 0.552808988764045"; depth 445 ; known ; synonymous GL192420.1 samtools variation 2892669 2892669 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 48 ; unknown ; N/A GL192420.1 samtools variation 2893977 2893977 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192420.1 samtools variation 2901841 2901841 . . . alleles " A G"; frequencies " 0.418181818181818 0.581818181818182"; depth 55 ; unknown ; N/A GL192420.1 samtools variation 2904642 2904642 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192420.1 samtools variation 2905324 2905324 . . . alleles " T C"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL192420.1 samtools variation 2913883 2913883 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL192420.1 samtools variation 2917607 2917607 . . . alleles " A C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192420.1 samtools variation 2919261 2919261 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192420.1 samtools variation 2971914 2971914 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; synonymous GL192420.1 samtools variation 2985791 2985791 . . . alleles " T A"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192420.1 samtools variation 2987037 2987037 . . . alleles " T C"; frequencies " 0.418181818181818 0.581818181818182"; depth 55 ; unknown ; N/A GL192420.1 samtools variation 2987901 2987901 . . . alleles " T C"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; known ; N/A GL192420.1 samtools variation 2987907 2987907 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 26 ; known ; N/A GL192420.1 samtools variation 2988611 2988611 . . . alleles " C T"; frequencies " 0.46875 0.53125"; depth 64 ; unknown ; N/A GL192420.1 samtools variation 2988963 2988963 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192420.1 samtools variation 2989555 2989555 . . . alleles " G A"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL192420.1 samtools variation 2990102 2990102 . . . alleles " T C"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; unknown ; N/A GL192421.1 samtools variation 7797 7797 . . . alleles " G A"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; known ; N/A GL192421.1 samtools variation 7817 7817 . . . alleles " T C"; frequencies " 0.36 0.64"; depth 25 ; known ; N/A GL192421.1 samtools variation 22591 22591 . . . alleles " G A"; frequencies " 0.471264367816092 0.528735632183908"; depth 87 ; unknown ; synonymous GL192421.1 samtools variation 41431 41431 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; known ; synonymous GL192421.1 samtools variation 45492 45492 . . . alleles " C T"; frequencies " 0.641975308641975 0.358024691358025"; depth 81 ; unknown ; synonymous GL192421.1 samtools variation 47029 47029 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 55 ; unknown ; N/A GL192421.1 samtools variation 50528 50528 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192421.1 samtools variation 50580 50580 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192421.1 samtools variation 51199 51199 . . . alleles " T C"; frequencies " 0.295454545454545 0.704545454545455"; depth 44 ; unknown ; synonymous GL192421.1 samtools variation 51947 51947 . . . alleles " C A"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL192421.1 samtools variation 51949 51949 . . . alleles " A G"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192421.1 samtools variation 55793 55793 . . . alleles " A G"; frequencies " 0.32 0.68"; depth 25 ; unknown ; synonymous GL192421.1 samtools variation 77844 77844 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 45 ; unknown ; N/A GL192421.1 samtools variation 119528 119528 . . . alleles " A G"; frequencies " 0.657142857142857 0.342857142857143"; depth 245 ; unknown ; N/A GL192421.1 samtools variation 120390 120390 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192421.1 samtools variation 123097 123097 . . . alleles " A G"; frequencies " 0.523809523809524 0.46031746031746"; depth 63 ; unknown ; synonymous GL192421.1 samtools variation 142738 142738 . . . alleles " T C"; frequencies " 0.790419161676647 0.209580838323353"; depth 167 ; known ; N/A GL192421.1 samtools variation 142743 142743 . . . alleles " A G"; frequencies " 0.775757575757576 0.224242424242424"; depth 165 ; known ; N/A GL192421.1 samtools variation 142873 142873 . . . alleles " A G"; frequencies " 0.437037037037037 0.562962962962963"; depth 270 ; known ; N/A GL192421.1 samtools variation 143182 143182 . . . alleles " T C"; frequencies " 0.594594594594595 0.405405405405405"; depth 222 ; unknown ; N/A GL192421.1 samtools variation 143223 143223 . . . alleles " T C"; frequencies " 0.335051546391753 0.664948453608247"; depth 194 ; known ; N/A GL192421.1 samtools variation 156826 156826 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192421.1 samtools variation 255678 255678 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; synonymous GL192421.1 samtools variation 256935 256935 . . . alleles " G A"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; synonymous GL192421.1 samtools variation 256990 256990 . . . alleles " C T"; frequencies " 0.59375 0.40625"; depth 32 ; known ; synonymous GL192421.1 samtools variation 257034 257034 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; unknown ; synonymous GL192421.1 samtools variation 259140 259140 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; synonymous GL192421.1 samtools variation 261704 261704 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192421.1 samtools variation 261759 261759 . . . alleles " T A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192421.1 samtools variation 261768 261768 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192421.1 samtools variation 262228 262228 . . . alleles " A C"; frequencies " 0.555555555555556 0.444444444444444"; depth 90 ; unknown ; N/A GL192421.1 samtools variation 296576 296576 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL192421.1 samtools variation 298344 298344 . . . alleles " G C"; frequencies " 0.671111111111111 0.328888888888889"; depth 225 ; known ; N/A GL192421.1 samtools variation 298499 298499 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 420 ; known ; N/A GL192421.1 samtools variation 298548 298548 . . . alleles " T C"; frequencies " 0.561038961038961 0.438961038961039"; depth 385 ; known ; N/A GL192421.1 samtools variation 298564 298564 . . . alleles " G A"; frequencies " 0.575498575498576 0.424501424501425"; depth 351 ; known ; non-synonymous GL192421.1 samtools variation 301973 301973 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; N/A GL192421.1 samtools variation 306995 306995 . . . alleles " G A"; frequencies " 0.651515151515151 0.348484848484849"; depth 66 ; unknown ; non-synonymous GL192421.1 samtools variation 405476 405476 . . . alleles " T C"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; synonymous GL192421.1 samtools variation 405478 405478 . . . alleles " T C"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; non-synonymous GL192421.1 samtools variation 409384 409384 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; synonymous GL192421.1 samtools variation 418152 418152 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; known ; N/A GL192421.1 samtools variation 420133 420133 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192421.1 samtools variation 421468 421468 . . . alleles " A G"; frequencies " 0.229508196721311 0.770491803278688"; depth 61 ; known ; non-synonymous GL192421.1 samtools variation 422754 422754 . . . alleles " G T"; frequencies " 0.219512195121951 0.780487804878049"; depth 123 ; unknown ; synonymous GL192421.1 samtools variation 422810 422810 . . . alleles " A G"; frequencies " 0.251851851851852 0.748148148148148"; depth 135 ; unknown ; non-synonymous GL192421.1 samtools variation 423051 423051 . . . alleles " A G"; frequencies " 0.520833333333333 0.479166666666667"; depth 48 ; unknown ; N/A GL192421.1 samtools variation 423085 423085 . . . alleles " C A"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; N/A GL192421.1 samtools variation 425897 425897 . . . alleles " T A"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL192421.1 samtools variation 426674 426674 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192421.1 samtools variation 436816 436816 . . . alleles " C T"; frequencies " 0.216216216216216 0.783783783783784"; depth 37 ; unknown ; synonymous GL192421.1 samtools variation 461259 461259 . . . alleles " A G"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192421.1 samtools variation 461272 461272 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192421.1 samtools variation 461762 461762 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192421.1 samtools variation 462238 462238 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192421.1 samtools variation 464443 464443 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192421.1 samtools variation 623385 623385 . . . alleles " C A"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192421.1 samtools variation 629779 629779 . . . alleles " T C"; frequencies " 0.37956204379562 0.62043795620438"; depth 137 ; known ; N/A GL192421.1 samtools variation 630001 630001 . . . alleles " G C"; frequencies " 0.794247787610619 0.205752212389381"; depth 452 ; known ; N/A GL192421.1 samtools variation 630048 630048 . . . alleles " G A"; frequencies " 0.401459854014599 0.598540145985402"; depth 411 ; known ; N/A GL192421.1 samtools variation 630105 630105 . . . alleles " A C"; frequencies " 0.406976744186047 0.593023255813954"; depth 86 ; known ; N/A GL192421.1 samtools variation 671770 671770 . . . alleles " G T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192421.1 samtools variation 690802 690802 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192421.1 samtools variation 690823 690823 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192421.1 samtools variation 690873 690873 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192421.1 samtools variation 690981 690981 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; synonymous GL192421.1 samtools variation 691559 691559 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192421.1 samtools variation 705587 705587 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL192421.1 samtools variation 706748 706748 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192421.1 samtools variation 710920 710920 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192421.1 samtools variation 738429 738429 . . . alleles " T G"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL192421.1 samtools variation 738447 738447 . . . alleles " G T"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; N/A GL192421.1 samtools variation 823226 823226 . . . alleles " G A"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; synonymous GL192421.1 samtools variation 829821 829821 . . . alleles " G C"; frequencies " 0.754098360655738 0.245901639344262"; depth 61 ; unknown ; synonymous GL192421.1 samtools variation 831149 831149 . . . alleles " T C"; frequencies " 0.785123966942149 0.214876033057851"; depth 121 ; unknown ; N/A GL192421.1 samtools variation 840215 840215 . . . alleles " A G"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL192421.1 samtools variation 840831 840831 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192421.1 samtools variation 841288 841288 . . . alleles " T A"; frequencies " 0.697674418604651 0.302325581395349"; depth 43 ; unknown ; N/A GL192421.1 samtools variation 841628 841628 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192421.1 samtools variation 841855 841855 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192421.1 samtools variation 847810 847810 . . . alleles " G C"; frequencies " 0.374125874125874 0.625874125874126"; depth 572 ; known ; non-synonymous GL192421.1 samtools variation 848177 848177 . . . alleles " T C"; frequencies " 0.686514886164623 0.313485113835377"; depth 571 ; unknown ; N/A GL192421.1 samtools variation 848287 848287 . . . alleles " A G"; frequencies " 0.668122270742358 0.331877729257642"; depth 458 ; unknown ; N/A GL192421.1 samtools variation 886545 886545 . . . alleles " C T"; frequencies " 0.67816091954023 0.32183908045977"; depth 87 ; unknown ; synonymous GL192421.1 samtools variation 904322 904322 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192421.1 samtools variation 906763 906763 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192421.1 samtools variation 913981 913981 . . . alleles " G A"; frequencies " 0.637404580152672 0.362595419847328"; depth 262 ; unknown ; synonymous GL192421.1 samtools variation 954644 954644 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; synonymous GL192421.1 samtools variation 968071 968071 . . . alleles " T C"; frequencies " 0.467741935483871 0.532258064516129"; depth 124 ; unknown ; N/A GL192421.1 samtools variation 1009686 1009686 . . . alleles " C A"; frequencies " 0.516666666666667 0.483333333333333"; depth 60 ; unknown ; N/A GL192421.1 samtools variation 1010159 1010159 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 50 ; unknown ; N/A GL192421.1 samtools variation 1029041 1029041 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192421.1 samtools variation 1162900 1162900 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192421.1 samtools variation 1366237 1366237 . . . alleles " T G"; frequencies " 0.219512195121951 0.780487804878049"; depth 41 ; known ; N/A GL192421.1 samtools variation 1366628 1366628 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 39 ; known ; synonymous GL192421.1 samtools variation 1366906 1366906 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; known ; N/A GL192421.1 samtools variation 1367532 1367532 . . . alleles " T C"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL192421.1 samtools variation 1487862 1487862 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 36 ; unknown ; synonymous GL192421.1 samtools variation 1489901 1489901 . . . alleles " C T"; frequencies " 0.74468085106383 0.25531914893617"; depth 47 ; unknown ; N/A GL192421.1 samtools variation 1490073 1490073 . . . alleles " T C"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192421.1 samtools variation 1499113 1499113 . . . alleles " T C"; frequencies " 0.671957671957672 0.328042328042328"; depth 189 ; unknown ; synonymous GL192421.1 samtools variation 1499826 1499826 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; synonymous GL192421.1 samtools variation 1508371 1508371 . . . alleles " A G"; frequencies " 0.606060606060606 0.393939393939394"; depth 66 ; unknown ; N/A GL192421.1 samtools variation 1518446 1518446 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192421.1 samtools variation 1518480 1518480 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192421.1 samtools variation 1521811 1521811 . . . alleles " A G"; frequencies " 0.723577235772358 0.276422764227642"; depth 123 ; unknown ; N/A GL192421.1 samtools variation 1523839 1523839 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192421.1 samtools variation 1524720 1524720 . . . alleles " C T"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL192421.1 samtools variation 1530327 1530327 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192421.1 samtools variation 1545761 1545761 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192421.1 samtools variation 1548291 1548291 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; N/A GL192421.1 samtools variation 1548318 1548318 . . . alleles " T C"; frequencies " 0.351351351351351 0.648648648648649"; depth 37 ; unknown ; N/A GL192421.1 samtools variation 1548372 1548372 . . . alleles " A G"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192421.1 samtools variation 1548408 1548408 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 38 ; unknown ; N/A GL192421.1 samtools variation 1548428 1548428 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 46 ; unknown ; N/A GL192421.1 samtools variation 1548517 1548517 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL192421.1 samtools variation 1548627 1548627 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 45 ; unknown ; N/A GL192421.1 samtools variation 1549358 1549358 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192421.1 samtools variation 1550834 1550834 . . . alleles " G T"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL192421.1 samtools variation 1551936 1551936 . . . alleles " T C"; frequencies " 0.710691823899371 0.289308176100629"; depth 159 ; unknown ; N/A GL192421.1 samtools variation 1556962 1556962 . . . alleles " T C"; frequencies " 0.512658227848101 0.487341772151899"; depth 158 ; unknown ; N/A GL192421.1 samtools variation 1559321 1559321 . . . alleles " T C"; frequencies " 0.66030534351145 0.33969465648855"; depth 262 ; unknown ; N/A GL192421.1 samtools variation 1559925 1559925 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 80 ; unknown ; N/A GL192421.1 samtools variation 1559942 1559942 . . . alleles " T C"; frequencies " 0.792682926829268 0.207317073170732"; depth 82 ; unknown ; N/A GL192421.1 samtools variation 1560433 1560433 . . . alleles " A G"; frequencies " 0.305921052631579 0.694078947368421"; depth 304 ; known ; N/A GL192421.1 samtools variation 1561003 1561003 . . . alleles " T C"; frequencies " 0.212962962962963 0.787037037037037"; depth 108 ; known ; N/A GL192421.1 samtools variation 1561280 1561280 . . . alleles " T G"; frequencies " 0.723270440251572 0.276729559748428"; depth 159 ; known ; N/A GL192421.1 samtools variation 1561408 1561408 . . . alleles " A C"; frequencies " 0.741758241758242 0.258241758241758"; depth 182 ; unknown ; N/A GL192421.1 samtools variation 1561879 1561879 . . . alleles " G A"; frequencies " 0.202380952380952 0.797619047619048"; depth 84 ; known ; N/A GL192421.1 samtools variation 1563302 1563302 . . . alleles " A G"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL192421.1 samtools variation 1564877 1564877 . . . alleles " C T"; frequencies " 0.39622641509434 0.60377358490566"; depth 53 ; unknown ; N/A GL192421.1 samtools variation 1567337 1567337 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL192421.1 samtools variation 1569758 1569758 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; unknown ; N/A GL192421.1 samtools variation 1570664 1570664 . . . alleles " T C"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL192421.1 samtools variation 1571493 1571493 . . . alleles " G A"; frequencies " 0.797872340425532 0.202127659574468"; depth 94 ; unknown ; N/A GL192421.1 samtools variation 1571537 1571537 . . . alleles " A G"; frequencies " 0.797101449275362 0.202898550724638"; depth 69 ; unknown ; N/A GL192421.1 samtools variation 1571763 1571763 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 51 ; unknown ; N/A GL192421.1 samtools variation 1571765 1571765 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 49 ; unknown ; N/A GL192421.1 samtools variation 1572024 1572024 . . . alleles " C T"; frequencies " 0.264705882352941 0.735294117647059"; depth 34 ; unknown ; N/A GL192421.1 samtools variation 1572305 1572305 . . . alleles " A C"; frequencies " 0.444444444444444 0.555555555555556"; depth 54 ; unknown ; N/A GL192421.1 samtools variation 1572669 1572669 . . . alleles " G A"; frequencies " 0.608187134502924 0.391812865497076"; depth 171 ; unknown ; N/A GL192421.1 samtools variation 1573683 1573683 . . . alleles " G A"; frequencies " 0.474358974358974 0.525641025641026"; depth 78 ; unknown ; N/A GL192421.1 samtools variation 1573770 1573770 . . . alleles " C T"; frequencies " 0.680851063829787 0.319148936170213"; depth 47 ; unknown ; N/A GL192421.1 samtools variation 1574175 1574175 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL192421.1 samtools variation 1574784 1574784 . . . alleles " A C"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; N/A GL192421.1 samtools variation 1575473 1575473 . . . alleles " A G"; frequencies " 0.448275862068966 0.551724137931034"; depth 58 ; known ; N/A GL192421.1 samtools variation 1576763 1576763 . . . alleles " T C"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; N/A GL192421.1 samtools variation 1582265 1582265 . . . alleles " A G"; frequencies " 0.396419437340153 0.603580562659846"; depth 391 ; known ; synonymous GL192421.1 samtools variation 1584484 1584484 . . . alleles " A G"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192421.1 samtools variation 1592232 1592232 . . . alleles " G A"; frequencies " 0.256410256410256 0.743589743589744"; depth 39 ; known ; N/A GL192421.1 samtools variation 1600609 1600609 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192421.1 samtools variation 1613284 1613284 . . . alleles " T C"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192421.1 samtools variation 1620603 1620603 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; known ; N/A GL192421.1 samtools variation 1642712 1642712 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192421.1 samtools variation 1659276 1659276 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192421.1 samtools variation 1664173 1664173 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192421.1 samtools variation 1666028 1666028 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192421.1 samtools variation 1672711 1672711 . . . alleles " G A"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; unknown ; N/A GL192421.1 samtools variation 1673554 1673554 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192421.1 samtools variation 1673688 1673688 . . . alleles " G C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192421.1 samtools variation 1673745 1673745 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192421.1 samtools variation 1681898 1681898 . . . alleles " T A"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; known ; N/A GL192421.1 samtools variation 1682593 1682593 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL192421.1 samtools variation 1684511 1684511 . . . alleles " C T"; frequencies " 0.220338983050847 0.779661016949153"; depth 59 ; known ; N/A GL192421.1 samtools variation 1687693 1687693 . . . alleles " A G"; frequencies " 0.78 0.22"; depth 50 ; unknown ; N/A GL192421.1 samtools variation 1688071 1688071 . . . alleles " T C"; frequencies " 0.61038961038961 0.38961038961039"; depth 77 ; unknown ; N/A GL192421.1 samtools variation 1691928 1691928 . . . alleles " T A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192421.1 samtools variation 1692310 1692310 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192421.1 samtools variation 1716535 1716535 . . . alleles " A C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; known ; N/A GL192421.1 samtools variation 1719049 1719049 . . . alleles " C T"; frequencies " 0.570776255707763 0.429223744292237"; depth 219 ; unknown ; synonymous GL192421.1 samtools variation 1722046 1722046 . . . alleles " C T"; frequencies " 0.547619047619048 0.452380952380952"; depth 42 ; unknown ; N/A GL192421.1 samtools variation 1722073 1722073 . . . alleles " G C"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; known ; N/A GL192421.1 samtools variation 1722178 1722178 . . . alleles " A T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192421.1 samtools variation 1727138 1727138 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 242 ; known ; synonymous GL192421.1 samtools variation 1742643 1742643 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192421.1 samtools variation 1746066 1746066 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192421.1 samtools variation 1764181 1764181 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 90 ; unknown ; N/A GL192421.1 samtools variation 1764525 1764525 . . . alleles " C T"; frequencies " 0.315789473684211 0.679824561403509"; depth 228 ; unknown ; N/A GL192421.1 samtools variation 1765009 1765009 . . . alleles " G A"; frequencies " 0.797872340425532 0.202127659574468"; depth 188 ; unknown ; N/A GL192421.1 samtools variation 1765662 1765662 . . . alleles " A G"; frequencies " 0.35195530726257 0.64804469273743"; depth 179 ; unknown ; N/A GL192421.1 samtools variation 1765876 1765876 . . . alleles " C T"; frequencies " 0.442028985507246 0.557971014492754"; depth 138 ; unknown ; N/A GL192421.1 samtools variation 1766220 1766220 . . . alleles " G A"; frequencies " 0.360721442885772 0.639278557114228"; depth 499 ; unknown ; N/A GL192421.1 samtools variation 1767630 1767630 . . . alleles " C T"; frequencies " 0.392344497607655 0.607655502392344"; depth 209 ; unknown ; N/A GL192421.1 samtools variation 1827678 1827678 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192421.1 samtools variation 2155440 2155440 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 24 ; known ; non-synonymous GL192421.1 samtools variation 2166796 2166796 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192421.1 samtools variation 2166930 2166930 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192421.1 samtools variation 2348709 2348709 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; synonymous GL192421.1 samtools variation 2348714 2348714 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; non-synonymous GL192421.1 samtools variation 2350403 2350403 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192421.1 samtools variation 2350423 2350423 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192421.1 samtools variation 2351446 2351446 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; unknown ; N/A GL192421.1 samtools variation 2351477 2351477 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192421.1 samtools variation 2351598 2351598 . . . alleles " C T"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192421.1 samtools variation 2542463 2542463 . . . alleles " A G"; frequencies " 0.756756756756757 0.243243243243243"; depth 111 ; unknown ; non-synonymous GL192421.1 samtools variation 2581829 2581829 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192421.1 samtools variation 2593962 2593962 . . . alleles " C T"; frequencies " 0.639344262295082 0.360655737704918"; depth 122 ; known ; non-synonymous GL192421.1 samtools variation 2606216 2606216 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192421.1 samtools variation 2607042 2607042 . . . alleles " T A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192421.1 samtools variation 2610087 2610087 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192421.1 samtools variation 2620074 2620074 . . . alleles " G A"; frequencies " 0.628571428571429 0.371428571428571"; depth 70 ; known ; N/A GL192421.1 samtools variation 2620087 2620087 . . . alleles " A G"; frequencies " 0.447368421052632 0.552631578947368"; depth 76 ; known ; N/A GL192421.1 samtools variation 2621135 2621135 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192421.1 samtools variation 2621331 2621331 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192421.1 samtools variation 2625073 2625073 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192421.1 samtools variation 2625163 2625163 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192421.1 samtools variation 2641623 2641623 . . . alleles " C T"; frequencies " 0.408163265306122 0.591836734693878"; depth 49 ; known ; N/A GL192421.1 samtools variation 2641896 2641896 . . . alleles " C A"; frequencies " 0.680851063829787 0.319148936170213"; depth 94 ; unknown ; N/A GL192421.1 samtools variation 2642669 2642669 . . . alleles " A G"; frequencies " 0.577777777777778 0.422222222222222"; depth 135 ; known ; synonymous GL192421.1 samtools variation 2655479 2655479 . . . alleles " A G"; frequencies " 0.609756097560976 0.390243902439024"; depth 82 ; unknown ; synonymous GL192421.1 samtools variation 2655829 2655829 . . . alleles " C T"; frequencies " 0.584269662921348 0.415730337078652"; depth 178 ; unknown ; N/A GL192421.1 samtools variation 2665590 2665590 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192421.1 samtools variation 2667466 2667466 . . . alleles " A G"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; known ; N/A GL192421.1 samtools variation 2669640 2669640 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192421.1 samtools variation 2675209 2675209 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192421.1 samtools variation 2680619 2680619 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL192421.1 samtools variation 2680673 2680673 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192421.1 samtools variation 2681316 2681316 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192421.1 samtools variation 2681461 2681461 . . . alleles " G A"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; unknown ; N/A GL192421.1 samtools variation 2681733 2681733 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192421.1 samtools variation 2792004 2792004 . . . alleles " T C"; frequencies " 0.477272727272727 0.522727272727273"; depth 176 ; known ; N/A GL192421.1 samtools variation 2802672 2802672 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192421.1 samtools variation 2802816 2802816 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192421.1 samtools variation 2805093 2805093 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 32 ; known ; N/A GL192421.1 samtools variation 2805223 2805223 . . . alleles " A T"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; known ; N/A GL192421.1 samtools variation 2815035 2815035 . . . alleles " G C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL192421.1 samtools variation 2829827 2829827 . . . alleles " T G"; frequencies " 0.55 0.45"; depth 20 ; unknown ; non-synonymous GL192421.1 samtools variation 2833316 2833316 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 57 ; unknown ; N/A GL192421.1 samtools variation 2881942 2881942 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192421.1 samtools variation 2883107 2883107 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192421.1 samtools variation 2883290 2883290 . . . alleles " G A"; frequencies " 0.647435897435897 0.352564102564103"; depth 156 ; unknown ; N/A GL192421.1 samtools variation 2884151 2884151 . . . alleles " A G"; frequencies " 0.573684210526316 0.426315789473684"; depth 190 ; unknown ; N/A GL192421.1 samtools variation 2884224 2884224 . . . alleles " T C"; frequencies " 0.577777777777778 0.422222222222222"; depth 135 ; known ; N/A GL192421.1 samtools variation 2884239 2884239 . . . alleles " A T"; frequencies " 0.639097744360902 0.360902255639098"; depth 133 ; unknown ; N/A GL192421.1 samtools variation 2884240 2884240 . . . alleles " A C"; frequencies " 0.631578947368421 0.360902255639098"; depth 133 ; unknown ; N/A GL192421.1 samtools variation 2884362 2884362 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 95 ; unknown ; N/A GL192421.1 samtools variation 2884487 2884487 . . . alleles " C T"; frequencies " 0.44047619047619 0.55952380952381"; depth 84 ; unknown ; N/A GL192421.1 samtools variation 2884735 2884735 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 76 ; unknown ; N/A GL192421.1 samtools variation 2884768 2884768 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 99 ; unknown ; N/A GL192421.1 samtools variation 2885052 2885052 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 98 ; unknown ; N/A GL192421.1 samtools variation 2885684 2885684 . . . alleles " A G"; frequencies " 0.48582995951417 0.51417004048583"; depth 247 ; unknown ; synonymous GL192421.1 samtools variation 2888833 2888833 . . . alleles " T A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192421.1 samtools variation 2892010 2892010 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192421.1 samtools variation 2924805 2924805 . . . alleles " A G"; frequencies " 0.538116591928251 0.461883408071749"; depth 223 ; known ; non-synonymous GL192421.1 samtools variation 2946765 2946765 . . . alleles " G A"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; known ; N/A GL192421.1 samtools variation 2950728 2950728 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 30 ; known ; synonymous GL192421.1 samtools variation 2989915 2989915 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192421.1 samtools variation 2990050 2990050 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192421.1 samtools variation 3015337 3015337 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192421.1 samtools variation 3017850 3017850 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192422.1 samtools variation 274713 274713 . . . alleles " G C"; frequencies " 0.67 0.33"; depth 100 ; known ; N/A GL192422.1 samtools variation 629495 629495 . . . alleles " A T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192422.1 samtools variation 630942 630942 . . . alleles " G A"; frequencies " 0.560975609756098 0.439024390243902"; depth 82 ; known ; N/A GL192422.1 samtools variation 639632 639632 . . . alleles " C T"; frequencies " 0.34375 0.65625"; depth 32 ; known ; N/A GL192422.1 samtools variation 651539 651539 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 25 ; known ; synonymous GL192422.1 samtools variation 653235 653235 . . . alleles " C A"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL192422.1 samtools variation 654693 654693 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192422.1 samtools variation 748568 748568 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192422.1 samtools variation 748739 748739 . . . alleles " C A"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192422.1 samtools variation 748806 748806 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192422.1 samtools variation 750847 750847 . . . alleles " C T"; frequencies " 0.243243243243243 0.756756756756757"; depth 37 ; known ; N/A GL192422.1 samtools variation 846927 846927 . . . alleles " G T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192422.1 samtools variation 850612 850612 . . . alleles " G A"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; non-synonymous GL192422.1 samtools variation 930757 930757 . . . alleles " G A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192422.1 samtools variation 937399 937399 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192422.1 samtools variation 998823 998823 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; synonymous GL192423.1 samtools variation 171437 171437 . . . alleles " A T"; frequencies " 0.520833333333333 0.479166666666667"; depth 96 ; known ; N/A GL192423.1 samtools variation 233786 233786 . . . alleles " C T"; frequencies " 0.793650793650794 0.206349206349206"; depth 63 ; unknown ; N/A GL192423.1 samtools variation 234342 234342 . . . alleles " A C"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; synonymous GL192423.1 samtools variation 250264 250264 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; known ; N/A GL192423.1 samtools variation 250281 250281 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL192423.1 samtools variation 268079 268079 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 121 ; unknown ; non-synonymous GL192423.1 samtools variation 268142 268142 . . . alleles " G C"; frequencies " 0.416216216216216 0.583783783783784"; depth 185 ; unknown ; non-synonymous GL192423.1 samtools variation 279540 279540 . . . alleles " T C"; frequencies " 0.56140350877193 0.43859649122807"; depth 57 ; unknown ; N/A GL192423.1 samtools variation 355595 355595 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192423.1 samtools variation 464473 464473 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192423.1 samtools variation 467529 467529 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; synonymous GL192423.1 samtools variation 495809 495809 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192423.1 samtools variation 496312 496312 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192423.1 samtools variation 496515 496515 . . . alleles " C T"; frequencies " 0.653333333333333 0.346666666666667"; depth 75 ; unknown ; N/A GL192423.1 samtools variation 497066 497066 . . . alleles " T C"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL192423.1 samtools variation 497627 497627 . . . alleles " A T"; frequencies " 0.78 0.22"; depth 50 ; unknown ; N/A GL192423.1 samtools variation 498023 498023 . . . alleles " T C"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192423.1 samtools variation 498407 498407 . . . alleles " A G"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; unknown ; N/A GL192423.1 samtools variation 498567 498567 . . . alleles " A G"; frequencies " 0.592105263157895 0.407894736842105"; depth 76 ; unknown ; N/A GL192423.1 samtools variation 499554 499554 . . . alleles " A T"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; unknown ; N/A GL192424.1 samtools variation 883973 883973 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; non-synonymous GL192424.1 samtools variation 910663 910663 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; synonymous GL192424.1 samtools variation 2793698 2793698 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192425.1 samtools variation 251013 251013 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192425.1 samtools variation 261424 261424 . . . alleles " G A"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL192425.1 samtools variation 261452 261452 . . . alleles " A T"; frequencies " 0.2 0.8"; depth 30 ; known ; N/A GL192425.1 samtools variation 283000 283000 . . . alleles " C T"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; synonymous GL192425.1 samtools variation 391099 391099 . . . alleles " A T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192425.1 samtools variation 392199 392199 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192425.1 samtools variation 392950 392950 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192425.1 samtools variation 394359 394359 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192425.1 samtools variation 394392 394392 . . . alleles " T A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192425.1 samtools variation 394611 394611 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192425.1 samtools variation 395673 395673 . . . alleles " C A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192425.1 samtools variation 395706 395706 . . . alleles " T G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192425.1 samtools variation 610870 610870 . . . alleles " A G"; frequencies " 0.79136690647482 0.20863309352518"; depth 139 ; unknown ; N/A GL192425.1 samtools variation 611967 611967 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; synonymous GL192425.1 samtools variation 707877 707877 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192425.1 samtools variation 707893 707893 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL192425.1 samtools variation 746644 746644 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192425.1 samtools variation 845136 845136 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192425.1 samtools variation 922216 922216 . . . alleles " A C"; frequencies " 0.221052631578947 0.778947368421053"; depth 380 ; known ; N/A GL192425.1 samtools variation 922444 922444 . . . alleles " A G"; frequencies " 0.252918287937743 0.747081712062257"; depth 257 ; known ; N/A GL192425.1 samtools variation 932302 932302 . . . alleles " G A"; frequencies " 0.717391304347826 0.282608695652174"; depth 230 ; known ; synonymous GL192425.1 samtools variation 1263234 1263234 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL192425.1 samtools variation 1265715 1265715 . . . alleles " G A"; frequencies " 0.661800486618005 0.338199513381995"; depth 411 ; known ; N/A GL192425.1 samtools variation 1266548 1266548 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192425.1 samtools variation 1268974 1268974 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; known ; N/A GL192425.1 samtools variation 1364646 1364646 . . . alleles " C T"; frequencies " 0.503424657534247 0.496575342465753"; depth 292 ; known ; synonymous GL192425.1 samtools variation 1373471 1373471 . . . alleles " T C"; frequencies " 0.663636363636364 0.336363636363636"; depth 220 ; known ; synonymous GL192425.1 samtools variation 1373610 1373610 . . . alleles " A T"; frequencies " 0.547058823529412 0.452941176470588"; depth 170 ; known ; N/A GL192425.1 samtools variation 1373781 1373781 . . . alleles " T C"; frequencies " 0.514970059880239 0.48502994011976"; depth 167 ; known ; N/A GL192425.1 samtools variation 1374614 1374614 . . . alleles " A G"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; known ; N/A GL192425.1 samtools variation 1374785 1374785 . . . alleles " A G"; frequencies " 0.442622950819672 0.557377049180328"; depth 122 ; known ; N/A GL192425.1 samtools variation 1375437 1375437 . . . alleles " C T"; frequencies " 0.551470588235294 0.448529411764706"; depth 136 ; known ; N/A GL192425.1 samtools variation 1375546 1375546 . . . alleles " T C"; frequencies " 0.573770491803279 0.426229508196721"; depth 122 ; known ; N/A GL192425.1 samtools variation 1375856 1375856 . . . alleles " T A"; frequencies " 0.467889908256881 0.532110091743119"; depth 109 ; known ; N/A GL192425.1 samtools variation 1375900 1375900 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 116 ; known ; N/A GL192425.1 samtools variation 1376425 1376425 . . . alleles " A G"; frequencies " 0.446601941747573 0.553398058252427"; depth 103 ; known ; N/A GL192425.1 samtools variation 1376533 1376533 . . . alleles " G C"; frequencies " 0.475 0.525"; depth 80 ; known ; N/A GL192425.1 samtools variation 1377058 1377058 . . . alleles " G A"; frequencies " 0.383333333333333 0.616666666666667"; depth 240 ; known ; N/A GL192425.1 samtools variation 1377554 1377554 . . . alleles " C T"; frequencies " 0.618055555555556 0.381944444444444"; depth 144 ; known ; N/A GL192425.1 samtools variation 1377591 1377591 . . . alleles " T C"; frequencies " 0.503225806451613 0.496774193548387"; depth 155 ; known ; N/A GL192425.1 samtools variation 1377825 1377825 . . . alleles " A G"; frequencies " 0.549707602339181 0.450292397660819"; depth 342 ; known ; N/A GL192425.1 samtools variation 1378324 1378324 . . . alleles " G A"; frequencies " 0.505639097744361 0.494360902255639"; depth 532 ; known ; N/A GL192425.1 samtools variation 1378524 1378524 . . . alleles " G A"; frequencies " 0.43801652892562 0.56198347107438"; depth 242 ; known ; N/A GL192425.1 samtools variation 1378656 1378656 . . . alleles " G C"; frequencies " 0.489878542510121 0.510121457489879"; depth 247 ; known ; N/A GL192425.1 samtools variation 1378728 1378728 . . . alleles " C T"; frequencies " 0.473469387755102 0.526530612244898"; depth 245 ; known ; N/A GL192425.1 samtools variation 1379234 1379234 . . . alleles " T G"; frequencies " 0.442396313364055 0.552995391705069"; depth 217 ; known ; N/A GL192425.1 samtools variation 1379315 1379315 . . . alleles " T C"; frequencies " 0.519230769230769 0.480769230769231"; depth 208 ; known ; N/A GL192425.1 samtools variation 1430912 1430912 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; known ; synonymous GL192425.1 samtools variation 1638993 1638993 . . . alleles " C G"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; unknown ; non-synonymous GL192425.1 samtools variation 1642802 1642802 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192425.1 samtools variation 1647306 1647306 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192425.1 samtools variation 1648498 1648498 . . . alleles " G A"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL192425.1 samtools variation 1649578 1649578 . . . alleles " A G"; frequencies " 0.701754385964912 0.298245614035088"; depth 57 ; unknown ; N/A GL192425.1 samtools variation 1818571 1818571 . . . alleles " C G"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL192425.1 samtools variation 1818725 1818725 . . . alleles " G C"; frequencies " 0.720930232558139 0.27906976744186"; depth 86 ; unknown ; N/A GL192425.1 samtools variation 1818726 1818726 . . . alleles " A G"; frequencies " 0.717647058823529 0.282352941176471"; depth 85 ; unknown ; N/A GL192425.1 samtools variation 1819178 1819178 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; synonymous GL192425.1 samtools variation 1932275 1932275 . . . alleles " G T"; frequencies " 0.735294117647059 0.264705882352941"; depth 170 ; unknown ; N/A GL192425.1 samtools variation 1935760 1935760 . . . alleles " T C"; frequencies " 0.735632183908046 0.264367816091954"; depth 87 ; unknown ; synonymous GL192425.1 samtools variation 1936193 1936193 . . . alleles " A G"; frequencies " 0.770408163265306 0.229591836734694"; depth 196 ; unknown ; N/A GL192425.1 samtools variation 1937246 1937246 . . . alleles " G A"; frequencies " 0.677083333333333 0.322916666666667"; depth 288 ; unknown ; N/A GL192425.1 samtools variation 1937348 1937348 . . . alleles " G T"; frequencies " 0.64 0.36"; depth 125 ; unknown ; N/A GL192425.1 samtools variation 1937522 1937522 . . . alleles " A G"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; unknown ; N/A GL192425.1 samtools variation 2022147 2022147 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL192425.1 samtools variation 2022947 2022947 . . . alleles " G A"; frequencies " 0.63768115942029 0.36231884057971"; depth 69 ; unknown ; N/A GL192425.1 samtools variation 2023775 2023775 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192425.1 samtools variation 2023969 2023969 . . . alleles " T A"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL192425.1 samtools variation 2025816 2025816 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL192425.1 samtools variation 2090494 2090494 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192425.1 samtools variation 2206856 2206856 . . . alleles " A G"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; known ; non-synonymous GL192425.1 samtools variation 2270615 2270615 . . . alleles " A G"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; non-synonymous GL192425.1 samtools variation 2271242 2271242 . . . alleles " T A"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; non-synonymous GL192425.1 samtools variation 2322049 2322049 . . . alleles " C T"; frequencies " 0.68 0.32"; depth 50 ; unknown ; N/A GL192425.1 samtools variation 2400055 2400055 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192425.1 samtools variation 2403994 2403994 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192425.1 samtools variation 2405324 2405324 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192425.1 samtools variation 2570975 2570975 . . . alleles " T C"; frequencies " 0.588752196836555 0.411247803163445"; depth 569 ; unknown ; N/A GL192425.1 samtools variation 2571181 2571181 . . . alleles " G C"; frequencies " 0.574626865671642 0.425373134328358"; depth 134 ; unknown ; N/A GL192425.1 samtools variation 2794744 2794744 . . . alleles " A C"; frequencies " 0.467741935483871 0.532258064516129"; depth 62 ; known ; N/A GL192425.1 samtools variation 2942706 2942706 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192425.1 samtools variation 2949175 2949175 . . . alleles " T A"; frequencies " 0.732142857142857 0.267857142857143"; depth 56 ; unknown ; N/A GL192425.1 samtools variation 2951301 2951301 . . . alleles " G T"; frequencies " 0.46 0.54"; depth 100 ; unknown ; N/A GL192425.1 samtools variation 2953366 2953366 . . . alleles " A G"; frequencies " 0.279279279279279 0.720720720720721"; depth 111 ; known ; synonymous GL192426.1 samtools variation 150093 150093 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192426.1 samtools variation 295160 295160 . . . alleles " C T"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; known ; N/A GL192426.1 samtools variation 302162 302162 . . . alleles " C G"; frequencies " 0.73558648111332 0.26441351888668"; depth 503 ; unknown ; non-synonymous GL192426.1 samtools variation 305039 305039 . . . alleles " C G"; frequencies " 0.4375 0.5625"; depth 32 ; known ; N/A GL192426.1 samtools variation 308349 308349 . . . alleles " T C"; frequencies " 0.665722379603399 0.334277620396601"; depth 353 ; known ; N/A GL192426.1 samtools variation 309934 309934 . . . alleles " G A"; frequencies " 0.310126582278481 0.689873417721519"; depth 158 ; known ; N/A GL192426.1 samtools variation 311577 311577 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192426.1 samtools variation 312928 312928 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL192426.1 samtools variation 313193 313193 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192426.1 samtools variation 313549 313549 . . . alleles " C G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL192426.1 samtools variation 315500 315500 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192426.1 samtools variation 318196 318196 . . . alleles " C T"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; known ; N/A GL192426.1 samtools variation 318488 318488 . . . alleles " G A"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; known ; N/A GL192426.1 samtools variation 318609 318609 . . . alleles " A G"; frequencies " 0.48 0.52"; depth 25 ; known ; N/A GL192426.1 samtools variation 318619 318619 . . . alleles " T C"; frequencies " 0.48 0.52"; depth 25 ; known ; N/A GL192426.1 samtools variation 319055 319055 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192426.1 samtools variation 331664 331664 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192426.1 samtools variation 335565 335565 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192426.1 samtools variation 336702 336702 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192426.1 samtools variation 336867 336867 . . . alleles " A C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192426.1 samtools variation 336868 336868 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192426.1 samtools variation 342538 342538 . . . alleles " C A"; frequencies " 0.672413793103448 0.327586206896552"; depth 58 ; known ; N/A GL192426.1 samtools variation 394815 394815 . . . alleles " T C"; frequencies " 0.773333333333333 0.226666666666667"; depth 75 ; known ; N/A GL192426.1 samtools variation 395013 395013 . . . alleles " C T"; frequencies " 0.383720930232558 0.616279069767442"; depth 86 ; known ; N/A GL192426.1 samtools variation 395083 395083 . . . alleles " A T"; frequencies " 0.671428571428571 0.328571428571429"; depth 70 ; known ; N/A GL192426.1 samtools variation 395945 395945 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192426.1 samtools variation 397192 397192 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192426.1 samtools variation 397814 397814 . . . alleles " G A"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; known ; N/A GL192426.1 samtools variation 404170 404170 . . . alleles " C T"; frequencies " 0.447368421052632 0.552631578947368"; depth 76 ; known ; non-synonymous GL192426.1 samtools variation 406026 406026 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192426.1 samtools variation 421915 421915 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192426.1 samtools variation 425403 425403 . . . alleles " A C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; non-synonymous GL192426.1 samtools variation 458462 458462 . . . alleles " C A"; frequencies " 0.778688524590164 0.221311475409836"; depth 122 ; unknown ; non-synonymous GL192426.1 samtools variation 482288 482288 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; synonymous GL192426.1 samtools variation 491179 491179 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192426.1 samtools variation 498632 498632 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; synonymous GL192426.1 samtools variation 967133 967133 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL192426.1 samtools variation 967455 967455 . . . alleles " G C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192426.1 samtools variation 967506 967506 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192426.1 samtools variation 967612 967612 . . . alleles " A T"; frequencies " 0.486486486486487 0.513513513513513"; depth 37 ; unknown ; N/A GL192426.1 samtools variation 967723 967723 . . . alleles " A G"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL192426.1 samtools variation 968591 968591 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192426.1 samtools variation 968592 968592 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192426.1 samtools variation 968764 968764 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192426.1 samtools variation 969109 969109 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192426.1 samtools variation 969260 969260 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192426.1 samtools variation 969413 969413 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192426.1 samtools variation 974752 974752 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192426.1 samtools variation 982967 982967 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; non-synonymous GL192426.1 samtools variation 983017 983017 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; synonymous GL192426.1 samtools variation 1012023 1012023 . . . alleles " A T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; synonymous GL192426.1 samtools variation 1026249 1026249 . . . alleles " G A"; frequencies " 0.280701754385965 0.719298245614035"; depth 228 ; unknown ; N/A GL192426.1 samtools variation 1026396 1026396 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 247 ; unknown ; N/A GL192426.1 samtools variation 1082179 1082179 . . . alleles " A G"; frequencies " 0.51063829787234 0.48936170212766"; depth 141 ; unknown ; synonymous GL192426.1 samtools variation 1082264 1082264 . . . alleles " G A"; frequencies " 0.648936170212766 0.351063829787234"; depth 94 ; unknown ; non-synonymous GL192426.1 samtools variation 1537975 1537975 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192426.1 samtools variation 1541749 1541749 . . . alleles " C T"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL192426.1 samtools variation 1543873 1543873 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192426.1 samtools variation 1558674 1558674 . . . alleles " G A"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192426.1 samtools variation 1616718 1616718 . . . alleles " T G"; frequencies " 0.634615384615385 0.365384615384615"; depth 52 ; unknown ; N/A GL192426.1 samtools variation 1627332 1627332 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192426.1 samtools variation 1634055 1634055 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192426.1 samtools variation 1635152 1635152 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 35 ; unknown ; N/A GL192426.1 samtools variation 1638075 1638075 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL192426.1 samtools variation 1641762 1641762 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192426.1 samtools variation 1642572 1642572 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192426.1 samtools variation 1642574 1642574 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192426.1 samtools variation 1643529 1643529 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192426.1 samtools variation 1643969 1643969 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192426.1 samtools variation 1644139 1644139 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192426.1 samtools variation 1644238 1644238 . . . alleles " G T"; frequencies " 0.553191489361702 0.446808510638298"; depth 47 ; unknown ; N/A GL192426.1 samtools variation 1644426 1644426 . . . alleles " A G"; frequencies " 0.413793103448276 0.586206896551724"; depth 87 ; unknown ; N/A GL192426.1 samtools variation 1647084 1647084 . . . alleles " G C"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL192426.1 samtools variation 1647810 1647810 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192426.1 samtools variation 1648023 1648023 . . . alleles " T A"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL192426.1 samtools variation 1648885 1648885 . . . alleles " C T"; frequencies " 0.651162790697674 0.348837209302326"; depth 43 ; unknown ; N/A GL192426.1 samtools variation 1649087 1649087 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192426.1 samtools variation 1653116 1653116 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192426.1 samtools variation 1653192 1653192 . . . alleles " A C"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; unknown ; N/A GL192426.1 samtools variation 1654429 1654429 . . . alleles " C T"; frequencies " 0.340909090909091 0.659090909090909"; depth 44 ; unknown ; N/A GL192426.1 samtools variation 1655177 1655177 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192426.1 samtools variation 1655179 1655179 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192426.1 samtools variation 1655394 1655394 . . . alleles " A C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192426.1 samtools variation 1655697 1655697 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192426.1 samtools variation 1655720 1655720 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192426.1 samtools variation 1656403 1656403 . . . alleles " C A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192426.1 samtools variation 1658131 1658131 . . . alleles " G A"; frequencies " 0.415384615384615 0.584615384615385"; depth 65 ; unknown ; N/A GL192426.1 samtools variation 1663828 1663828 . . . alleles " C T"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; unknown ; N/A GL192426.1 samtools variation 1671113 1671113 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192426.1 samtools variation 1723992 1723992 . . . alleles " G T"; frequencies " 0.653061224489796 0.346938775510204"; depth 196 ; unknown ; N/A GL192426.1 samtools variation 1726328 1726328 . . . alleles " A G"; frequencies " 0.504504504504504 0.495495495495495"; depth 111 ; unknown ; N/A GL192426.1 samtools variation 1732001 1732001 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192426.1 samtools variation 1732357 1732357 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192426.1 samtools variation 1734243 1734243 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192426.1 samtools variation 1796832 1796832 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192426.1 samtools variation 1811062 1811062 . . . alleles " G A"; frequencies " 0.391666666666667 0.608333333333333"; depth 120 ; unknown ; synonymous GL192426.1 samtools variation 1859734 1859734 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192426.1 samtools variation 1859793 1859793 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192426.1 samtools variation 1860314 1860314 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192426.1 samtools variation 1860350 1860350 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192426.1 samtools variation 1860426 1860426 . . . alleles " T G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192426.1 samtools variation 2140399 2140399 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192426.1 samtools variation 2831705 2831705 . . . alleles " C G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL192426.1 samtools variation 2831738 2831738 . . . alleles " T G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192426.1 samtools variation 2831894 2831894 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192426.1 samtools variation 2832618 2832618 . . . alleles " T C"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL192426.1 samtools variation 2836679 2836679 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192426.1 samtools variation 2839330 2839330 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192426.1 samtools variation 2857876 2857876 . . . alleles " G T"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; N/A GL192426.1 samtools variation 2862058 2862058 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192426.1 samtools variation 2876627 2876627 . . . alleles " G C"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; known ; N/A GL192428.1 samtools variation 291996 291996 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192428.1 samtools variation 453499 453499 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192428.1 samtools variation 486729 486729 . . . alleles " T C"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL192428.1 samtools variation 533233 533233 . . . alleles " T G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192428.1 samtools variation 584895 584895 . . . alleles " T C"; frequencies " 0.704081632653061 0.295918367346939"; depth 98 ; unknown ; synonymous GL192428.1 samtools variation 965877 965877 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192429.1 samtools variation 294835 294835 . . . alleles " T C"; frequencies " 0.370860927152318 0.629139072847682"; depth 151 ; known ; synonymous GL192429.1 samtools variation 302518 302518 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192429.1 samtools variation 306801 306801 . . . alleles " T A"; frequencies " 0.696969696969697 0.303030303030303"; depth 66 ; known ; N/A GL192429.1 samtools variation 306854 306854 . . . alleles " C A"; frequencies " 0.345679012345679 0.654320987654321"; depth 81 ; known ; N/A GL192429.1 samtools variation 307074 307074 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192429.1 samtools variation 307456 307456 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 176 ; unknown ; N/A GL192429.1 samtools variation 307544 307544 . . . alleles " C G"; frequencies " 0.37037037037037 0.62962962962963"; depth 81 ; unknown ; N/A GL192429.1 samtools variation 308051 308051 . . . alleles " C G"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; known ; N/A GL192429.1 samtools variation 308094 308094 . . . alleles " A G"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; known ; N/A GL192429.1 samtools variation 308167 308167 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; known ; N/A GL192429.1 samtools variation 497016 497016 . . . alleles " C T"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; synonymous GL192429.1 samtools variation 619373 619373 . . . alleles " C T"; frequencies " 0.36231884057971 0.63768115942029"; depth 69 ; known ; synonymous GL192429.1 samtools variation 620311 620311 . . . alleles " A T"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; known ; N/A GL192429.1 samtools variation 620950 620950 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL192429.1 samtools variation 2175552 2175552 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192429.1 samtools variation 2237311 2237311 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL192429.1 samtools variation 2528481 2528481 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; synonymous GL192429.1 samtools variation 2594154 2594154 . . . alleles " C T"; frequencies " 0.592233009708738 0.407766990291262"; depth 515 ; unknown ; N/A GL192429.1 samtools variation 2594428 2594428 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 304 ; unknown ; N/A GL192429.1 samtools variation 2599412 2599412 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192429.1 samtools variation 2599512 2599512 . . . alleles " A G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192429.1 samtools variation 2606607 2606607 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192429.1 samtools variation 2638626 2638626 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192429.1 samtools variation 2666610 2666610 . . . alleles " A C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192429.1 samtools variation 2671519 2671519 . . . alleles " C T"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192430.1 samtools variation 102970 102970 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192430.1 samtools variation 354138 354138 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192430.1 samtools variation 354717 354717 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192430.1 samtools variation 354976 354976 . . . alleles " A G"; frequencies " 0.354166666666667 0.645833333333333"; depth 48 ; unknown ; N/A GL192430.1 samtools variation 359588 359588 . . . alleles " C G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192430.1 samtools variation 368998 368998 . . . alleles " G A"; frequencies " 0.74468085106383 0.25531914893617"; depth 47 ; known ; N/A GL192430.1 samtools variation 370906 370906 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192430.1 samtools variation 372737 372737 . . . alleles " C T"; frequencies " 0.403225806451613 0.596774193548387"; depth 62 ; known ; N/A GL192430.1 samtools variation 373066 373066 . . . alleles " G T"; frequencies " 0.480392156862745 0.519607843137255"; depth 102 ; known ; N/A GL192430.1 samtools variation 374149 374149 . . . alleles " G T"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; unknown ; N/A GL192430.1 samtools variation 374236 374236 . . . alleles " G A"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL192430.1 samtools variation 375952 375952 . . . alleles " C G"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL192430.1 samtools variation 380881 380881 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL192430.1 samtools variation 383407 383407 . . . alleles " A C"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192430.1 samtools variation 384565 384565 . . . alleles " T C"; frequencies " 0.233333333333333 0.766666666666667"; depth 30 ; unknown ; N/A GL192430.1 samtools variation 396766 396766 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192430.1 samtools variation 400546 400546 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192430.1 samtools variation 401184 401184 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; known ; N/A GL192430.1 samtools variation 401219 401219 . . . alleles " G A"; frequencies " 0.708860759493671 0.291139240506329"; depth 79 ; known ; N/A GL192430.1 samtools variation 401301 401301 . . . alleles " T C"; frequencies " 0.768421052631579 0.231578947368421"; depth 95 ; known ; N/A GL192430.1 samtools variation 401384 401384 . . . alleles " T C"; frequencies " 0.754098360655738 0.245901639344262"; depth 61 ; known ; N/A GL192430.1 samtools variation 401494 401494 . . . alleles " G A"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192430.1 samtools variation 401813 401813 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 45 ; known ; N/A GL192430.1 samtools variation 402090 402090 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192430.1 samtools variation 402889 402889 . . . alleles " T G"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192430.1 samtools variation 402965 402965 . . . alleles " A G"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; known ; N/A GL192430.1 samtools variation 403088 403088 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192430.1 samtools variation 403109 403109 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192430.1 samtools variation 409984 409984 . . . alleles " T C"; frequencies " 0.613013698630137 0.386986301369863"; depth 292 ; known ; non-synonymous GL192430.1 samtools variation 414533 414533 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; N/A GL192430.1 samtools variation 414766 414766 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL192430.1 samtools variation 414798 414798 . . . alleles " C G"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192430.1 samtools variation 695397 695397 . . . alleles " T C"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192430.1 samtools variation 698071 698071 . . . alleles " C T"; frequencies " 0.641025641025641 0.358974358974359"; depth 78 ; unknown ; N/A GL192430.1 samtools variation 700146 700146 . . . alleles " T A"; frequencies " 0.770491803278688 0.229508196721311"; depth 61 ; unknown ; N/A GL192430.1 samtools variation 700405 700405 . . . alleles " G A"; frequencies " 0.752293577981651 0.247706422018349"; depth 109 ; unknown ; N/A GL192430.1 samtools variation 700908 700908 . . . alleles " C T"; frequencies " 0.781818181818182 0.218181818181818"; depth 55 ; unknown ; N/A GL192430.1 samtools variation 703926 703926 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192430.1 samtools variation 704268 704268 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192430.1 samtools variation 705496 705496 . . . alleles " T A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192430.1 samtools variation 707269 707269 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192430.1 samtools variation 950420 950420 . . . alleles " C T"; frequencies " 0.76 0.24"; depth 75 ; unknown ; N/A GL192430.1 samtools variation 950671 950671 . . . alleles " G A"; frequencies " 0.697802197802198 0.302197802197802"; depth 182 ; unknown ; N/A GL192430.1 samtools variation 966410 966410 . . . alleles " C A"; frequencies " 0.635802469135803 0.364197530864198"; depth 162 ; known ; synonymous GL192430.1 samtools variation 1005430 1005430 . . . alleles " G C"; frequencies " 0.2 0.75"; depth 20 ; known ; N/A GL192430.1 samtools variation 1012522 1012522 . . . alleles " G A"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; known ; N/A GL192430.1 samtools variation 1020108 1020108 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192430.1 samtools variation 1023926 1023926 . . . alleles " C T"; frequencies " 0.659459459459459 0.340540540540541"; depth 370 ; unknown ; N/A GL192430.1 samtools variation 1025268 1025268 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192430.1 samtools variation 1026185 1026185 . . . alleles " A G"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192430.1 samtools variation 1026245 1026245 . . . alleles " T C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192430.1 samtools variation 1026482 1026482 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192430.1 samtools variation 1030211 1030211 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192430.1 samtools variation 1030217 1030217 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192430.1 samtools variation 1030258 1030258 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192430.1 samtools variation 1049539 1049539 . . . alleles " G A"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; unknown ; N/A GL192430.1 samtools variation 1278142 1278142 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192430.1 samtools variation 1281559 1281559 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192430.1 samtools variation 1283676 1283676 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192430.1 samtools variation 1288451 1288451 . . . alleles " T C"; frequencies " 0.517241379310345 0.482758620689655"; depth 116 ; unknown ; N/A GL192430.1 samtools variation 1288456 1288456 . . . alleles " G A"; frequencies " 0.539823008849557 0.460176991150442"; depth 113 ; unknown ; N/A GL192430.1 samtools variation 1288595 1288595 . . . alleles " G A"; frequencies " 0.685185185185185 0.314814814814815"; depth 54 ; unknown ; N/A GL192430.1 samtools variation 1289371 1289371 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 32 ; unknown ; N/A GL192430.1 samtools variation 1289509 1289509 . . . alleles " C A"; frequencies " 0.470588235294118 0.529411764705882"; depth 51 ; unknown ; N/A GL192430.1 samtools variation 1289690 1289690 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192430.1 samtools variation 1289735 1289735 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; N/A GL192430.1 samtools variation 1289834 1289834 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192430.1 samtools variation 1290071 1290071 . . . alleles " A T"; frequencies " 0.358490566037736 0.641509433962264"; depth 53 ; unknown ; N/A GL192430.1 samtools variation 1290202 1290202 . . . alleles " A G"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; N/A GL192430.1 samtools variation 1291369 1291369 . . . alleles " C G"; frequencies " 0.686868686868687 0.313131313131313"; depth 99 ; known ; N/A GL192430.1 samtools variation 1291702 1291702 . . . alleles " G A"; frequencies " 0.670731707317073 0.329268292682927"; depth 82 ; known ; N/A GL192430.1 samtools variation 1307422 1307422 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192430.1 samtools variation 1317619 1317619 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192430.1 samtools variation 1330787 1330787 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192430.1 samtools variation 1339026 1339026 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192430.1 samtools variation 1341539 1341539 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192430.1 samtools variation 1576223 1576223 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192430.1 samtools variation 1589385 1589385 . . . alleles " T C"; frequencies " 0.522727272727273 0.477272727272727"; depth 88 ; unknown ; N/A GL192430.1 samtools variation 1593406 1593406 . . . alleles " T C"; frequencies " 0.36864406779661 0.63135593220339"; depth 236 ; known ; synonymous GL192430.1 samtools variation 1616021 1616021 . . . alleles " A G"; frequencies " 0.377049180327869 0.622950819672131"; depth 61 ; unknown ; synonymous GL192430.1 samtools variation 1652906 1652906 . . . alleles " G C"; frequencies " 0.5078125 0.4921875"; depth 128 ; unknown ; synonymous GL192430.1 samtools variation 1666881 1666881 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; synonymous GL192431.1 samtools variation 52557 52557 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; synonymous GL192431.1 samtools variation 58466 58466 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192431.1 samtools variation 62080 62080 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192431.1 samtools variation 131596 131596 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; known ; N/A GL192431.1 samtools variation 133126 133126 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192431.1 samtools variation 134717 134717 . . . alleles " T G"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192431.1 samtools variation 135845 135845 . . . alleles " C T"; frequencies " 0.621052631578947 0.378947368421053"; depth 95 ; known ; N/A GL192431.1 samtools variation 136136 136136 . . . alleles " C T"; frequencies " 0.589285714285714 0.410714285714286"; depth 56 ; unknown ; N/A GL192431.1 samtools variation 136139 136139 . . . alleles " C T"; frequencies " 0.706896551724138 0.293103448275862"; depth 58 ; known ; N/A GL192431.1 samtools variation 136696 136696 . . . alleles " T C"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL192431.1 samtools variation 136959 136959 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 144 ; known ; N/A GL192431.1 samtools variation 137569 137569 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192431.1 samtools variation 137631 137631 . . . alleles " C T"; frequencies " 0.298245614035088 0.701754385964912"; depth 57 ; known ; N/A GL192431.1 samtools variation 137916 137916 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 34 ; known ; N/A GL192431.1 samtools variation 138111 138111 . . . alleles " G A"; frequencies " 0.212121212121212 0.787878787878788"; depth 99 ; known ; N/A GL192431.1 samtools variation 138683 138683 . . . alleles " G A"; frequencies " 0.693877551020408 0.306122448979592"; depth 49 ; known ; N/A GL192431.1 samtools variation 139006 139006 . . . alleles " C T"; frequencies " 0.792079207920792 0.207920792079208"; depth 101 ; known ; synonymous GL192431.1 samtools variation 139288 139288 . . . alleles " C G"; frequencies " 0.363636363636364 0.636363636363636"; depth 44 ; unknown ; synonymous GL192431.1 samtools variation 2810309 2810309 . . . alleles " G T"; frequencies " 0.693069306930693 0.306930693069307"; depth 101 ; unknown ; N/A GL192431.1 samtools variation 2812792 2812792 . . . alleles " G A"; frequencies " 0.212121212121212 0.787878787878788"; depth 33 ; unknown ; N/A GL192431.1 samtools variation 2843506 2843506 . . . alleles " T C"; frequencies " 0.348717948717949 0.651282051282051"; depth 195 ; unknown ; synonymous GL192431.1 samtools variation 2847633 2847633 . . . alleles " C A"; frequencies " 0.36 0.64"; depth 75 ; unknown ; synonymous GL192431.1 samtools variation 2849907 2849907 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 48 ; unknown ; non-synonymous GL192431.1 samtools variation 2849910 2849910 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 42 ; unknown ; synonymous GL192431.1 samtools variation 2849990 2849990 . . . alleles " C T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192431.1 samtools variation 2851989 2851989 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192432.1 samtools variation 41295 41295 . . . alleles " G C"; frequencies " 0.337349397590361 0.662650602409639"; depth 83 ; unknown ; synonymous GL192432.1 samtools variation 50728 50728 . . . alleles " T C"; frequencies " 0.242236024844721 0.757763975155279"; depth 161 ; known ; N/A GL192432.1 samtools variation 58677 58677 . . . alleles " C T"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; known ; N/A GL192432.1 samtools variation 63282 63282 . . . alleles " C T"; frequencies " 0.784615384615385 0.215384615384615"; depth 65 ; known ; N/A GL192432.1 samtools variation 69320 69320 . . . alleles " G A"; frequencies " 0.383561643835616 0.616438356164384"; depth 73 ; unknown ; non-synonymous GL192432.1 samtools variation 69353 69353 . . . alleles " C T"; frequencies " 0.329113924050633 0.670886075949367"; depth 79 ; unknown ; non-synonymous GL192432.1 samtools variation 69644 69644 . . . alleles " C A"; frequencies " 0.77027027027027 0.22972972972973"; depth 148 ; unknown ; non-synonymous GL192432.1 samtools variation 79611 79611 . . . alleles " G A"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL192432.1 samtools variation 218905 218905 . . . alleles " G A"; frequencies " 0.382198952879581 0.617801047120419"; depth 191 ; known ; synonymous GL192433.1 samtools variation 2408957 2408957 . . . alleles " A T"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; non-synonymous GL192433.1 samtools variation 2412666 2412666 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; synonymous GL192433.1 samtools variation 2439200 2439200 . . . alleles " C G"; frequencies " 0.676190476190476 0.323809523809524"; depth 105 ; unknown ; non-synonymous GL192433.1 samtools variation 2465542 2465542 . . . alleles " G A"; frequencies " 0.586466165413534 0.413533834586466"; depth 133 ; unknown ; non-synonymous GL192433.1 samtools variation 2496982 2496982 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192433.1 samtools variation 2505509 2505509 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192433.1 samtools variation 2507090 2507090 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192433.1 samtools variation 2509978 2509978 . . . alleles " T C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192433.1 samtools variation 2510168 2510168 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192433.1 samtools variation 2513092 2513092 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192433.1 samtools variation 2513109 2513109 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192433.1 samtools variation 2513838 2513838 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 50 ; unknown ; N/A GL192433.1 samtools variation 2514388 2514388 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 68 ; unknown ; N/A GL192433.1 samtools variation 2515100 2515100 . . . alleles " G A"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; unknown ; N/A GL192433.1 samtools variation 2515910 2515910 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192433.1 samtools variation 2517203 2517203 . . . alleles " C T"; frequencies " 0.765625 0.234375"; depth 64 ; unknown ; N/A GL192433.1 samtools variation 2517953 2517953 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 66 ; unknown ; N/A GL192433.1 samtools variation 2517954 2517954 . . . alleles " T G"; frequencies " 0.723076923076923 0.276923076923077"; depth 65 ; unknown ; N/A GL192433.1 samtools variation 2523490 2523490 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192433.1 samtools variation 2523609 2523609 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192433.1 samtools variation 2527993 2527993 . . . alleles " T A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192433.1 samtools variation 2533822 2533822 . . . alleles " T C"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL192433.1 samtools variation 2543802 2543802 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192433.1 samtools variation 2549549 2549549 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192433.1 samtools variation 2610794 2610794 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192434.1 samtools variation 53920 53920 . . . alleles " A G"; frequencies " 0.439024390243902 0.560975609756098"; depth 41 ; known ; N/A GL192434.1 samtools variation 61002 61002 . . . alleles " G A"; frequencies " 0.519685039370079 0.480314960629921"; depth 127 ; known ; N/A GL192434.1 samtools variation 61269 61269 . . . alleles " T A"; frequencies " 0.494505494505495 0.505494505494505"; depth 91 ; known ; N/A GL192434.1 samtools variation 1560210 1560210 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192434.1 samtools variation 1701507 1701507 . . . alleles " T C"; frequencies " 0.467614533965245 0.532385466034755"; depth 633 ; known ; synonymous GL192434.1 samtools variation 1712008 1712008 . . . alleles " C A"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL192434.1 samtools variation 1713663 1713663 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 266 ; unknown ; synonymous GL192434.1 samtools variation 1715811 1715811 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192434.1 samtools variation 1715868 1715868 . . . alleles " A T"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL192434.1 samtools variation 1716052 1716052 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192434.1 samtools variation 1716833 1716833 . . . alleles " G A"; frequencies " 0.35 0.65"; depth 40 ; known ; N/A GL192434.1 samtools variation 1717513 1717513 . . . alleles " T C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192434.1 samtools variation 1717543 1717543 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192434.1 samtools variation 1720404 1720404 . . . alleles " C T"; frequencies " 0.508928571428571 0.491071428571429"; depth 112 ; known ; N/A GL192434.1 samtools variation 1727944 1727944 . . . alleles " A C"; frequencies " 0.53125 0.46875"; depth 128 ; known ; N/A GL192434.1 samtools variation 1735559 1735559 . . . alleles " C G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192434.1 samtools variation 1735564 1735564 . . . alleles " T G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192434.1 samtools variation 1735719 1735719 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192434.1 samtools variation 1754852 1754852 . . . alleles " A G"; frequencies " 0.483333333333333 0.516666666666667"; depth 120 ; known ; synonymous GL192434.1 samtools variation 1757025 1757025 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 72 ; known ; N/A GL192434.1 samtools variation 1836363 1836363 . . . alleles " G A"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; N/A GL192434.1 samtools variation 1836442 1836442 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192434.1 samtools variation 1839517 1839517 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192434.1 samtools variation 1842361 1842361 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192434.1 samtools variation 1850178 1850178 . . . alleles " T A"; frequencies " 0.794117647058823 0.205882352941176"; depth 68 ; unknown ; N/A GL192434.1 samtools variation 1850245 1850245 . . . alleles " C G"; frequencies " 0.767123287671233 0.232876712328767"; depth 73 ; unknown ; N/A GL192434.1 samtools variation 1858740 1858740 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192434.1 samtools variation 1867451 1867451 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192434.1 samtools variation 1964803 1964803 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192434.1 samtools variation 2018965 2018965 . . . alleles " G T"; frequencies " 0.798245614035088 0.201754385964912"; depth 114 ; unknown ; N/A GL192434.1 samtools variation 2117937 2117937 . . . alleles " C T"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL192434.1 samtools variation 2118294 2118294 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL192434.1 samtools variation 2118319 2118319 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 40 ; unknown ; N/A GL192434.1 samtools variation 2119095 2119095 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192434.1 samtools variation 2119620 2119620 . . . alleles " T A"; frequencies " 0.622950819672131 0.377049180327869"; depth 61 ; unknown ; N/A GL192434.1 samtools variation 2121448 2121448 . . . alleles " G C"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL192434.1 samtools variation 2121971 2121971 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192434.1 samtools variation 2125690 2125690 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192434.1 samtools variation 2126167 2126167 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192434.1 samtools variation 2130556 2130556 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192434.1 samtools variation 2131124 2131124 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192434.1 samtools variation 2131195 2131195 . . . alleles " C G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192434.1 samtools variation 2135545 2135545 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192434.1 samtools variation 2151199 2151199 . . . alleles " C G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192434.1 samtools variation 2151265 2151265 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192434.1 samtools variation 2152149 2152149 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192434.1 samtools variation 2152251 2152251 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192434.1 samtools variation 2155226 2155226 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192434.1 samtools variation 2155318 2155318 . . . alleles " G A"; frequencies " 0.574468085106383 0.425531914893617"; depth 47 ; unknown ; N/A GL192434.1 samtools variation 2161159 2161159 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192434.1 samtools variation 2165992 2165992 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192434.1 samtools variation 2166702 2166702 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192434.1 samtools variation 2168462 2168462 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192434.1 samtools variation 2172368 2172368 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192434.1 samtools variation 2172832 2172832 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192434.1 samtools variation 2174736 2174736 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192434.1 samtools variation 2178089 2178089 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL192434.1 samtools variation 2191989 2191989 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL192434.1 samtools variation 2198152 2198152 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192434.1 samtools variation 2215705 2215705 . . . alleles " A C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192434.1 samtools variation 2215944 2215944 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192434.1 samtools variation 2216565 2216565 . . . alleles " G A"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; known ; N/A GL192434.1 samtools variation 2216700 2216700 . . . alleles " G T"; frequencies " 0.648148148148148 0.351851851851852"; depth 54 ; known ; N/A GL192434.1 samtools variation 2233518 2233518 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192434.1 samtools variation 2239589 2239589 . . . alleles " C G"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; unknown ; N/A GL192434.1 samtools variation 2239757 2239757 . . . alleles " G A"; frequencies " 0.224489795918367 0.775510204081633"; depth 49 ; known ; N/A GL192434.1 samtools variation 2241037 2241037 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL192434.1 samtools variation 2248396 2248396 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192434.1 samtools variation 2249753 2249753 . . . alleles " G T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192434.1 samtools variation 2250279 2250279 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192434.1 samtools variation 2252194 2252194 . . . alleles " T G"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; N/A GL192434.1 samtools variation 2252853 2252853 . . . alleles " A G"; frequencies " 0.28 0.72"; depth 25 ; known ; N/A GL192434.1 samtools variation 2253075 2253075 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; known ; N/A GL192434.1 samtools variation 2253187 2253187 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL192434.1 samtools variation 2253786 2253786 . . . alleles " T A"; frequencies " 0.612244897959184 0.387755102040816"; depth 49 ; known ; N/A GL192434.1 samtools variation 2253799 2253799 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 25 ; known ; N/A GL192434.1 samtools variation 2253856 2253856 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL192434.1 samtools variation 2254406 2254406 . . . alleles " C A"; frequencies " 0.470588235294118 0.529411764705882"; depth 34 ; known ; N/A GL192434.1 samtools variation 2254454 2254454 . . . alleles " T A"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; unknown ; N/A GL192434.1 samtools variation 2254809 2254809 . . . alleles " C T"; frequencies " 0.659574468085106 0.340425531914894"; depth 47 ; known ; N/A GL192434.1 samtools variation 2256916 2256916 . . . alleles " A G"; frequencies " 0.711409395973154 0.288590604026846"; depth 149 ; known ; N/A GL192434.1 samtools variation 2257590 2257590 . . . alleles " T C"; frequencies " 0.610526315789474 0.389473684210526"; depth 95 ; known ; N/A GL192434.1 samtools variation 2257900 2257900 . . . alleles " C T"; frequencies " 0.379310344827586 0.620689655172414"; depth 58 ; known ; N/A GL192434.1 samtools variation 2257985 2257985 . . . alleles " T C"; frequencies " 0.360655737704918 0.639344262295082"; depth 61 ; known ; N/A GL192434.1 samtools variation 2259921 2259921 . . . alleles " T C"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; known ; N/A GL192434.1 samtools variation 2260024 2260024 . . . alleles " G A"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; known ; N/A GL192434.1 samtools variation 2263506 2263506 . . . alleles " T C"; frequencies " 0.675862068965517 0.324137931034483"; depth 145 ; known ; N/A GL192434.1 samtools variation 2263557 2263557 . . . alleles " G A"; frequencies " 0.787037037037037 0.212962962962963"; depth 108 ; unknown ; N/A GL192434.1 samtools variation 2263673 2263673 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 44 ; unknown ; N/A GL192434.1 samtools variation 2263677 2263677 . . . alleles " A C"; frequencies " 0.568627450980392 0.431372549019608"; depth 51 ; unknown ; N/A GL192434.1 samtools variation 2264336 2264336 . . . alleles " G A"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL192434.1 samtools variation 2264735 2264735 . . . alleles " T C"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; unknown ; N/A GL192434.1 samtools variation 2265241 2265241 . . . alleles " C T"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; unknown ; N/A GL192434.1 samtools variation 2265841 2265841 . . . alleles " A G"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; N/A GL192434.1 samtools variation 2266193 2266193 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192434.1 samtools variation 2266275 2266275 . . . alleles " C T"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL192434.1 samtools variation 2267563 2267563 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192434.1 samtools variation 2288005 2288005 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192434.1 samtools variation 2296025 2296025 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192434.1 samtools variation 2304296 2304296 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL192434.1 samtools variation 2308476 2308476 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192434.1 samtools variation 2313182 2313182 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192434.1 samtools variation 2316365 2316365 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192434.1 samtools variation 2316948 2316948 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192434.1 samtools variation 2322732 2322732 . . . alleles " G T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192434.1 samtools variation 2324264 2324264 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192434.1 samtools variation 2354977 2354977 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192434.1 samtools variation 2355014 2355014 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192434.1 samtools variation 2355780 2355780 . . . alleles " C T"; frequencies " 0.633608815426997 0.366391184573003"; depth 363 ; unknown ; synonymous GL192434.1 samtools variation 2357255 2357255 . . . alleles " C T"; frequencies " 0.549019607843137 0.450980392156863"; depth 51 ; known ; N/A GL192434.1 samtools variation 2357306 2357306 . . . alleles " T G"; frequencies " 0.692307692307692 0.307692307692308"; depth 117 ; known ; N/A GL192434.1 samtools variation 2358736 2358736 . . . alleles " G A"; frequencies " 0.776 0.22"; depth 250 ; unknown ; N/A GL192434.1 samtools variation 2359800 2359800 . . . alleles " G A"; frequencies " 0.793141592920354 0.206858407079646"; depth 904 ; unknown ; N/A GL192434.1 samtools variation 2392459 2392459 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192434.1 samtools variation 2393257 2393257 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; synonymous GL192434.1 samtools variation 2525874 2525874 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192434.1 samtools variation 2531607 2531607 . . . alleles " A G"; frequencies " 0.595744680851064 0.404255319148936"; depth 94 ; unknown ; N/A GL192434.1 samtools variation 2667180 2667180 . . . alleles " A C"; frequencies " 0.736842105263158 0.263157894736842"; depth 57 ; unknown ; N/A GL192434.1 samtools variation 2673564 2673564 . . . alleles " G A"; frequencies " 0.758064516129032 0.241935483870968"; depth 62 ; unknown ; N/A GL192434.1 samtools variation 2674749 2674749 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 78 ; unknown ; N/A GL192434.1 samtools variation 2675285 2675285 . . . alleles " A G"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192434.1 samtools variation 2678066 2678066 . . . alleles " A G"; frequencies " 0.738095238095238 0.261904761904762"; depth 84 ; unknown ; N/A GL192434.1 samtools variation 2678272 2678272 . . . alleles " T G"; frequencies " 0.631578947368421 0.368421052631579"; depth 95 ; unknown ; N/A GL192434.1 samtools variation 2680382 2680382 . . . alleles " C T"; frequencies " 0.58695652173913 0.41304347826087"; depth 46 ; unknown ; synonymous GL192435.1 samtools variation 1217866 1217866 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; N/A GL192435.1 samtools variation 1250376 1250376 . . . alleles " C T"; frequencies " 0.645833333333333 0.354166666666667"; depth 96 ; known ; synonymous GL192435.1 samtools variation 1547478 1547478 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192435.1 samtools variation 1691503 1691503 . . . alleles " C T"; frequencies " 0.792 0.208"; depth 125 ; unknown ; synonymous GL192435.1 samtools variation 1691852 1691852 . . . alleles " C A"; frequencies " 0.447058823529412 0.552941176470588"; depth 85 ; known ; non-synonymous GL192435.1 samtools variation 1691946 1691946 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 82 ; unknown ; non-synonymous GL192435.1 samtools variation 1712169 1712169 . . . alleles " C T"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; known ; synonymous GL192435.1 samtools variation 1717290 1717290 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192435.1 samtools variation 1720818 1720818 . . . alleles " T C"; frequencies " 0.421487603305785 0.578512396694215"; depth 121 ; known ; synonymous GL192435.1 samtools variation 1720866 1720866 . . . alleles " C T"; frequencies " 0.514084507042254 0.485915492957746"; depth 142 ; known ; synonymous GL192435.1 samtools variation 1720917 1720917 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 133 ; known ; synonymous GL192435.1 samtools variation 1728830 1728830 . . . alleles " C T"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; known ; non-synonymous GL192435.1 samtools variation 1770331 1770331 . . . alleles " C T"; frequencies " 0.612403100775194 0.387596899224806"; depth 129 ; unknown ; synonymous GL192435.1 samtools variation 1782276 1782276 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192435.1 samtools variation 1788723 1788723 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 58 ; unknown ; N/A GL192435.1 samtools variation 1809039 1809039 . . . alleles " A G"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; known ; N/A GL192435.1 samtools variation 1809479 1809479 . . . alleles " A G"; frequencies " 0.793103448275862 0.206896551724138"; depth 58 ; known ; N/A GL192435.1 samtools variation 1809576 1809576 . . . alleles " C T"; frequencies " 0.673469387755102 0.326530612244898"; depth 49 ; unknown ; N/A GL192435.1 samtools variation 1810978 1810978 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192435.1 samtools variation 1981743 1981743 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL192435.1 samtools variation 1984363 1984363 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192435.1 samtools variation 2068531 2068531 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192435.1 samtools variation 2068584 2068584 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL192435.1 samtools variation 2071834 2071834 . . . alleles " C G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192435.1 samtools variation 2072717 2072717 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192435.1 samtools variation 2075447 2075447 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192435.1 samtools variation 2078294 2078294 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192435.1 samtools variation 2087244 2087244 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL192435.1 samtools variation 2087437 2087437 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192435.1 samtools variation 2087622 2087622 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192435.1 samtools variation 2088152 2088152 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; known ; N/A GL192435.1 samtools variation 2088710 2088710 . . . alleles " A G"; frequencies " 0.351351351351351 0.648648648648649"; depth 37 ; unknown ; N/A GL192435.1 samtools variation 2088714 2088714 . . . alleles " A T"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL192435.1 samtools variation 2089390 2089390 . . . alleles " T A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; known ; N/A GL192435.1 samtools variation 2089511 2089511 . . . alleles " A G"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; known ; N/A GL192435.1 samtools variation 2089628 2089628 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 39 ; known ; N/A GL192435.1 samtools variation 2095935 2095935 . . . alleles " A G"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; known ; N/A GL192435.1 samtools variation 2101134 2101134 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192435.1 samtools variation 2105441 2105441 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192435.1 samtools variation 2105719 2105719 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192435.1 samtools variation 2106769 2106769 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192435.1 samtools variation 2113889 2113889 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192435.1 samtools variation 2115820 2115820 . . . alleles " A C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192435.1 samtools variation 2116128 2116128 . . . alleles " C T"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192435.1 samtools variation 2117322 2117322 . . . alleles " G A"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL192435.1 samtools variation 2117657 2117657 . . . alleles " T C"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; N/A GL192435.1 samtools variation 2123158 2123158 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192435.1 samtools variation 2125645 2125645 . . . alleles " G C"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192435.1 samtools variation 2125652 2125652 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192435.1 samtools variation 2125694 2125694 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192435.1 samtools variation 2125969 2125969 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192435.1 samtools variation 2125974 2125974 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192435.1 samtools variation 2127584 2127584 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192435.1 samtools variation 2148086 2148086 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192435.1 samtools variation 2151426 2151426 . . . alleles " C G"; frequencies " 0.76271186440678 0.23728813559322"; depth 59 ; unknown ; N/A GL192435.1 samtools variation 2152000 2152000 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192435.1 samtools variation 2154799 2154799 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192435.1 samtools variation 2155041 2155041 . . . alleles " T C"; frequencies " 0.435483870967742 0.564516129032258"; depth 62 ; known ; N/A GL192435.1 samtools variation 2156899 2156899 . . . alleles " G A"; frequencies " 0.720588235294118 0.279411764705882"; depth 68 ; unknown ; N/A GL192435.1 samtools variation 2162197 2162197 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192435.1 samtools variation 2168453 2168453 . . . alleles " A C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192435.1 samtools variation 2170823 2170823 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192435.1 samtools variation 2173071 2173071 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192435.1 samtools variation 2173155 2173155 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192435.1 samtools variation 2173801 2173801 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192435.1 samtools variation 2173897 2173897 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192435.1 samtools variation 2174528 2174528 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192435.1 samtools variation 2175759 2175759 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192435.1 samtools variation 2176315 2176315 . . . alleles " A G"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL192435.1 samtools variation 2184006 2184006 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192435.1 samtools variation 2184019 2184019 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192435.1 samtools variation 2184613 2184613 . . . alleles " A G"; frequencies " 0.530612244897959 0.469387755102041"; depth 49 ; known ; N/A GL192435.1 samtools variation 2187877 2187877 . . . alleles " C A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192435.1 samtools variation 2188559 2188559 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 26 ; known ; N/A GL192435.1 samtools variation 2194989 2194989 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192435.1 samtools variation 2195001 2195001 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192435.1 samtools variation 2195920 2195920 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192435.1 samtools variation 2195928 2195928 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192435.1 samtools variation 2198328 2198328 . . . alleles " C T"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; known ; N/A GL192435.1 samtools variation 2198568 2198568 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192435.1 samtools variation 2199907 2199907 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192435.1 samtools variation 2199983 2199983 . . . alleles " T C"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; non-synonymous GL192435.1 samtools variation 2200074 2200074 . . . alleles " A T"; frequencies " 0.540540540540541 0.459459459459459"; depth 185 ; unknown ; synonymous GL192435.1 samtools variation 2200375 2200375 . . . alleles " G A"; frequencies " 0.755102040816326 0.244897959183673"; depth 49 ; unknown ; N/A GL192435.1 samtools variation 2200708 2200708 . . . alleles " T A"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192435.1 samtools variation 2201429 2201429 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 110 ; unknown ; N/A GL192435.1 samtools variation 2201842 2201842 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 68 ; unknown ; N/A GL192435.1 samtools variation 2203695 2203695 . . . alleles " T C"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL192435.1 samtools variation 2203702 2203702 . . . alleles " T G"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; unknown ; N/A GL192435.1 samtools variation 2206974 2206974 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192435.1 samtools variation 2208119 2208119 . . . alleles " G C"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; known ; N/A GL192435.1 samtools variation 2208557 2208557 . . . alleles " G T"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; known ; N/A GL192435.1 samtools variation 2208895 2208895 . . . alleles " C T"; frequencies " 0.623529411764706 0.376470588235294"; depth 85 ; unknown ; N/A GL192435.1 samtools variation 2223724 2223724 . . . alleles " T C"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; known ; N/A GL192435.1 samtools variation 2299682 2299682 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192435.1 samtools variation 2305487 2305487 . . . alleles " T G"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192435.1 samtools variation 2375866 2375866 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192435.1 samtools variation 2376979 2376979 . . . alleles " C T"; frequencies " 0.782771535580524 0.217228464419476"; depth 267 ; unknown ; synonymous GL192435.1 samtools variation 2392980 2392980 . . . alleles " T C"; frequencies " 0.682027649769585 0.317972350230415"; depth 217 ; known ; synonymous GL192435.1 samtools variation 2470516 2470516 . . . alleles " A G"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; known ; synonymous GL192435.1 samtools variation 2471788 2471788 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192435.1 samtools variation 2485419 2485419 . . . alleles " T C"; frequencies " 0.432432432432432 0.567567567567568"; depth 111 ; known ; synonymous GL192435.1 samtools variation 2488594 2488594 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 63 ; known ; synonymous GL192435.1 samtools variation 2490202 2490202 . . . alleles " A G"; frequencies " 0.698412698412698 0.301587301587302"; depth 126 ; known ; synonymous GL192435.1 samtools variation 2494305 2494305 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192435.1 samtools variation 2609435 2609435 . . . alleles " A T"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; known ; N/A GL192435.1 samtools variation 2611043 2611043 . . . alleles " C T"; frequencies " 0.790575916230366 0.209424083769634"; depth 191 ; unknown ; N/A GL192435.1 samtools variation 2612725 2612725 . . . alleles " G C"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; known ; N/A GL192435.1 samtools variation 2616286 2616286 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 117 ; unknown ; N/A GL192435.1 samtools variation 2646865 2646865 . . . alleles " T C"; frequencies " 0.255555555555556 0.744444444444444"; depth 90 ; known ; N/A GL192435.1 samtools variation 2846057 2846057 . . . alleles " C T"; frequencies " 0.71830985915493 0.28169014084507"; depth 71 ; known ; N/A GL192435.1 samtools variation 2846128 2846128 . . . alleles " T C"; frequencies " 0.519736842105263 0.480263157894737"; depth 152 ; unknown ; N/A GL192435.1 samtools variation 2846397 2846397 . . . alleles " C T"; frequencies " 0.651567944250871 0.348432055749129"; depth 287 ; unknown ; N/A GL192435.1 samtools variation 2846399 2846399 . . . alleles " C T"; frequencies " 0.658703071672355 0.341296928327645"; depth 293 ; unknown ; N/A GL192435.1 samtools variation 2846716 2846716 . . . alleles " A G"; frequencies " 0.425249169435216 0.574750830564784"; depth 1204 ; known ; N/A GL192436.1 samtools variation 145738 145738 . . . alleles " T A"; frequencies " 0.30188679245283 0.69811320754717"; depth 53 ; unknown ; N/A GL192436.1 samtools variation 154401 154401 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 58 ; known ; N/A GL192436.1 samtools variation 154426 154426 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 54 ; known ; N/A GL192436.1 samtools variation 154736 154736 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL192436.1 samtools variation 154771 154771 . . . alleles " T C"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; known ; N/A GL192436.1 samtools variation 154893 154893 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; known ; N/A GL192436.1 samtools variation 155377 155377 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192436.1 samtools variation 155474 155474 . . . alleles " G T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192436.1 samtools variation 155546 155546 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL192436.1 samtools variation 155608 155608 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192436.1 samtools variation 156157 156157 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL192436.1 samtools variation 156919 156919 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192436.1 samtools variation 157119 157119 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 28 ; known ; non-synonymous GL192436.1 samtools variation 159518 159518 . . . alleles " G A"; frequencies " 0.414634146341463 0.585365853658537"; depth 41 ; unknown ; synonymous GL192436.1 samtools variation 160830 160830 . . . alleles " G A"; frequencies " 0.404761904761905 0.595238095238095"; depth 42 ; unknown ; synonymous GL192436.1 samtools variation 164109 164109 . . . alleles " A G"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; unknown ; non-synonymous GL192436.1 samtools variation 164111 164111 . . . alleles " G A"; frequencies " 0.78 0.22"; depth 50 ; unknown ; synonymous GL192436.1 samtools variation 164183 164183 . . . alleles " C T"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; synonymous GL192436.1 samtools variation 188105 188105 . . . alleles " T C"; frequencies " 0.627906976744186 0.372093023255814"; depth 43 ; known ; N/A GL192436.1 samtools variation 188540 188540 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192436.1 samtools variation 189601 189601 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192436.1 samtools variation 189654 189654 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192436.1 samtools variation 194801 194801 . . . alleles " G A"; frequencies " 0.755474452554745 0.244525547445255"; depth 274 ; unknown ; N/A GL192436.1 samtools variation 195404 195404 . . . alleles " A G"; frequencies " 0.517857142857143 0.482142857142857"; depth 56 ; known ; N/A GL192436.1 samtools variation 195543 195543 . . . alleles " G A"; frequencies " 0.277777777777778 0.722222222222222"; depth 72 ; unknown ; N/A GL192436.1 samtools variation 195750 195750 . . . alleles " C A"; frequencies " 0.26530612244898 0.73469387755102"; depth 49 ; known ; N/A GL192436.1 samtools variation 199631 199631 . . . alleles " C T"; frequencies " 0.71356783919598 0.28643216080402"; depth 199 ; unknown ; N/A GL192436.1 samtools variation 202780 202780 . . . alleles " C T"; frequencies " 0.762214983713355 0.234527687296417"; depth 307 ; unknown ; N/A GL192436.1 samtools variation 203116 203116 . . . alleles " C G"; frequencies " 0.753846153846154 0.246153846153846"; depth 65 ; unknown ; N/A GL192436.1 samtools variation 203634 203634 . . . alleles " G A"; frequencies " 0.536585365853659 0.463414634146341"; depth 123 ; unknown ; N/A GL192436.1 samtools variation 203807 203807 . . . alleles " A G"; frequencies " 0.748878923766816 0.251121076233184"; depth 223 ; known ; N/A GL192436.1 samtools variation 204088 204088 . . . alleles " G C"; frequencies " 0.618811881188119 0.381188118811881"; depth 202 ; known ; N/A GL192436.1 samtools variation 204347 204347 . . . alleles " A C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192436.1 samtools variation 204907 204907 . . . alleles " A G"; frequencies " 0.242718446601942 0.757281553398058"; depth 206 ; known ; N/A GL192436.1 samtools variation 272435 272435 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192436.1 samtools variation 273940 273940 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192436.1 samtools variation 281253 281253 . . . alleles " A G"; frequencies " 0.292682926829268 0.707317073170732"; depth 41 ; unknown ; N/A GL192436.1 samtools variation 281317 281317 . . . alleles " C T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; known ; N/A GL192436.1 samtools variation 281658 281658 . . . alleles " A G"; frequencies " 0.305555555555556 0.694444444444444"; depth 72 ; known ; non-synonymous GL192436.1 samtools variation 281663 281663 . . . alleles " G T"; frequencies " 0.585714285714286 0.414285714285714"; depth 70 ; unknown ; synonymous GL192436.1 samtools variation 281792 281792 . . . alleles " A G"; frequencies " 0.325925925925926 0.674074074074074"; depth 135 ; known ; non-synonymous GL192436.1 samtools variation 290721 290721 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 44 ; unknown ; N/A GL192436.1 samtools variation 291018 291018 . . . alleles " C T"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL192436.1 samtools variation 769107 769107 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192436.1 samtools variation 771576 771576 . . . alleles " C A"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL192436.1 samtools variation 815118 815118 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; non-synonymous GL192436.1 samtools variation 815144 815144 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; synonymous GL192436.1 samtools variation 832756 832756 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; non-synonymous GL192436.1 samtools variation 832775 832775 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; non-synonymous GL192436.1 samtools variation 834781 834781 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192436.1 samtools variation 980750 980750 . . . alleles " A G"; frequencies " 0.614583333333333 0.385416666666667"; depth 96 ; unknown ; N/A GL192436.1 samtools variation 981494 981494 . . . alleles " A G"; frequencies " 0.580357142857143 0.419642857142857"; depth 112 ; unknown ; N/A GL192436.1 samtools variation 984666 984666 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 64 ; unknown ; N/A GL192436.1 samtools variation 985326 985326 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192436.1 samtools variation 994359 994359 . . . alleles " A G"; frequencies " 0.310008857395926 0.689991142604074"; depth 1129 ; unknown ; synonymous GL192436.1 samtools variation 998607 998607 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192436.1 samtools variation 1010267 1010267 . . . alleles " C T"; frequencies " 0.743068391866913 0.256931608133087"; depth 541 ; unknown ; synonymous GL192436.1 samtools variation 1013605 1013605 . . . alleles " A G"; frequencies " 0.288546255506608 0.711453744493392"; depth 454 ; unknown ; N/A GL192436.1 samtools variation 1013919 1013919 . . . alleles " C A"; frequencies " 0.772058823529412 0.227941176470588"; depth 408 ; unknown ; N/A GL192436.1 samtools variation 1014945 1014945 . . . alleles " C T"; frequencies " 0.30188679245283 0.69811320754717"; depth 53 ; unknown ; N/A GL192436.1 samtools variation 1021253 1021253 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192436.1 samtools variation 1022859 1022859 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192436.1 samtools variation 1088507 1088507 . . . alleles " T C"; frequencies " 0.76984126984127 0.23015873015873"; depth 126 ; unknown ; N/A GL192436.1 samtools variation 1091082 1091082 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; N/A GL192436.1 samtools variation 1092088 1092088 . . . alleles " A G"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; unknown ; N/A GL192436.1 samtools variation 1092601 1092601 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192436.1 samtools variation 1092612 1092612 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192436.1 samtools variation 1097233 1097233 . . . alleles " G A"; frequencies " 0.642201834862385 0.357798165137615"; depth 109 ; unknown ; N/A GL192436.1 samtools variation 1098045 1098045 . . . alleles " C T"; frequencies " 0.592592592592593 0.407407407407407"; depth 54 ; unknown ; N/A GL192436.1 samtools variation 1098220 1098220 . . . alleles " A G"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL192436.1 samtools variation 1100025 1100025 . . . alleles " G A"; frequencies " 0.696078431372549 0.303921568627451"; depth 102 ; unknown ; N/A GL192436.1 samtools variation 1303419 1303419 . . . alleles " T C"; frequencies " 0.295238095238095 0.704761904761905"; depth 105 ; known ; N/A GL192436.1 samtools variation 1303458 1303458 . . . alleles " C T"; frequencies " 0.56701030927835 0.43298969072165"; depth 97 ; known ; N/A GL192436.1 samtools variation 1303468 1303468 . . . alleles " T C"; frequencies " 0.254385964912281 0.745614035087719"; depth 114 ; known ; N/A GL192436.1 samtools variation 1304256 1304256 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192436.1 samtools variation 1314079 1314079 . . . alleles " T G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192436.1 samtools variation 1318617 1318617 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192436.1 samtools variation 1326258 1326258 . . . alleles " C T"; frequencies " 0.595744680851064 0.404255319148936"; depth 47 ; unknown ; N/A GL192436.1 samtools variation 1519836 1519836 . . . alleles " G A"; frequencies " 0.627450980392157 0.372549019607843"; depth 51 ; known ; N/A GL192436.1 samtools variation 1523761 1523761 . . . alleles " G C"; frequencies " 0.772727272727273 0.227272727272727"; depth 66 ; unknown ; N/A GL192436.1 samtools variation 1591637 1591637 . . . alleles " T C"; frequencies " 0.796875 0.203125"; depth 64 ; unknown ; N/A GL192436.1 samtools variation 1592306 1592306 . . . alleles " A C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192436.1 samtools variation 1644076 1644076 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192436.1 samtools variation 1718289 1718289 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; known ; N/A GL192436.1 samtools variation 1718396 1718396 . . . alleles " A G"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; known ; non-synonymous GL192436.1 samtools variation 1718533 1718533 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; non-synonymous GL192436.1 samtools variation 1718551 1718551 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; known ; synonymous GL192436.1 samtools variation 1731317 1731317 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 55 ; known ; N/A GL192436.1 samtools variation 1731342 1731342 . . . alleles " G A"; frequencies " 0.519230769230769 0.480769230769231"; depth 52 ; known ; N/A GL192436.1 samtools variation 1731421 1731421 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; known ; N/A GL192436.1 samtools variation 1732582 1732582 . . . alleles " T C"; frequencies " 0.320512820512821 0.67948717948718"; depth 78 ; known ; N/A GL192436.1 samtools variation 1955375 1955375 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; known ; N/A GL192436.1 samtools variation 1955493 1955493 . . . alleles " G A"; frequencies " 0.413612565445026 0.586387434554974"; depth 191 ; known ; N/A GL192436.1 samtools variation 1955569 1955569 . . . alleles " C T"; frequencies " 0.424107142857143 0.575892857142857"; depth 224 ; known ; N/A GL192436.1 samtools variation 1956079 1956079 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 55 ; known ; N/A GL192436.1 samtools variation 1956124 1956124 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 40 ; known ; N/A GL192436.1 samtools variation 1956360 1956360 . . . alleles " T G"; frequencies " 0.363636363636364 0.636363636363636"; depth 110 ; known ; N/A GL192436.1 samtools variation 1956410 1956410 . . . alleles " G C"; frequencies " 0.663157894736842 0.336842105263158"; depth 95 ; known ; N/A GL192436.1 samtools variation 1957713 1957713 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192436.1 samtools variation 1958060 1958060 . . . alleles " C T"; frequencies " 0.358974358974359 0.641025641025641"; depth 39 ; known ; N/A GL192436.1 samtools variation 1958088 1958088 . . . alleles " T C"; frequencies " 0.225 0.775"; depth 40 ; known ; N/A GL192436.1 samtools variation 1958101 1958101 . . . alleles " T C"; frequencies " 0.303571428571429 0.696428571428571"; depth 56 ; known ; N/A GL192436.1 samtools variation 1959367 1959367 . . . alleles " T C"; frequencies " 0.21875 0.78125"; depth 64 ; known ; N/A GL192436.1 samtools variation 1959411 1959411 . . . alleles " G A"; frequencies " 0.797297297297297 0.202702702702703"; depth 74 ; known ; N/A GL192436.1 samtools variation 1959950 1959950 . . . alleles " C T"; frequencies " 0.6625 0.3375"; depth 80 ; known ; N/A GL192436.1 samtools variation 1960046 1960046 . . . alleles " G C"; frequencies " 0.28 0.72"; depth 50 ; unknown ; N/A GL192436.1 samtools variation 1960564 1960564 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192436.1 samtools variation 1960598 1960598 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192436.1 samtools variation 1960612 1960612 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192436.1 samtools variation 1961262 1961262 . . . alleles " G A"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192436.1 samtools variation 1961518 1961518 . . . alleles " G A"; frequencies " 0.670588235294118 0.329411764705882"; depth 85 ; unknown ; N/A GL192436.1 samtools variation 1961785 1961785 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 56 ; unknown ; N/A GL192436.1 samtools variation 1961840 1961840 . . . alleles " C G"; frequencies " 0.390243902439024 0.609756097560976"; depth 41 ; unknown ; N/A GL192436.1 samtools variation 1961845 1961845 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 42 ; unknown ; N/A GL192436.1 samtools variation 1961936 1961936 . . . alleles " A C"; frequencies " 0.641509433962264 0.358490566037736"; depth 53 ; unknown ; N/A GL192436.1 samtools variation 1961993 1961993 . . . alleles " G C"; frequencies " 0.660377358490566 0.339622641509434"; depth 53 ; known ; N/A GL192436.1 samtools variation 1962629 1962629 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 49 ; unknown ; N/A GL192436.1 samtools variation 1964963 1964963 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192436.1 samtools variation 1965432 1965432 . . . alleles " C A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192436.1 samtools variation 1972502 1972502 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192436.1 samtools variation 2152659 2152659 . . . alleles " T C"; frequencies " 0.234375 0.765625"; depth 64 ; known ; synonymous GL192436.1 samtools variation 2153996 2153996 . . . alleles " G T"; frequencies " 0.78125 0.21875"; depth 96 ; unknown ; N/A GL192436.1 samtools variation 2154114 2154114 . . . alleles " A C"; frequencies " 0.685314685314685 0.314685314685315"; depth 143 ; unknown ; N/A GL192436.1 samtools variation 2154168 2154168 . . . alleles " A G"; frequencies " 0.624277456647399 0.375722543352601"; depth 173 ; unknown ; N/A GL192436.1 samtools variation 2154995 2154995 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 96 ; unknown ; N/A GL192436.1 samtools variation 2155196 2155196 . . . alleles " C T"; frequencies " 0.702127659574468 0.297872340425532"; depth 47 ; unknown ; N/A GL192436.1 samtools variation 2155232 2155232 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 58 ; unknown ; N/A GL192436.1 samtools variation 2155662 2155662 . . . alleles " T C"; frequencies " 0.216216216216216 0.783783783783784"; depth 74 ; known ; N/A GL192436.1 samtools variation 2156294 2156294 . . . alleles " C T"; frequencies " 0.584070796460177 0.415929203539823"; depth 113 ; unknown ; N/A GL192436.1 samtools variation 2168945 2168945 . . . alleles " A G"; frequencies " 0.461254612546125 0.538745387453875"; depth 271 ; known ; N/A GL192436.1 samtools variation 2169047 2169047 . . . alleles " T C"; frequencies " 0.30952380952381 0.69047619047619"; depth 252 ; known ; N/A GL192436.1 samtools variation 2169070 2169070 . . . alleles " A G"; frequencies " 0.317269076305221 0.682730923694779"; depth 249 ; known ; N/A GL192436.1 samtools variation 2169085 2169085 . . . alleles " A G"; frequencies " 0.317343173431734 0.682656826568266"; depth 271 ; known ; N/A GL192436.1 samtools variation 2169221 2169221 . . . alleles " C T"; frequencies " 0.404145077720207 0.595854922279793"; depth 193 ; unknown ; N/A GL192436.1 samtools variation 2169268 2169268 . . . alleles " A G"; frequencies " 0.243589743589744 0.756410256410256"; depth 78 ; unknown ; N/A GL192436.1 samtools variation 2169269 2169269 . . . alleles " G C"; frequencies " 0.220779220779221 0.779220779220779"; depth 77 ; unknown ; N/A GL192436.1 samtools variation 2169835 2169835 . . . alleles " A G"; frequencies " 0.553299492385787 0.446700507614213"; depth 197 ; known ; N/A GL192436.1 samtools variation 2169875 2169875 . . . alleles " C T"; frequencies " 0.674418604651163 0.325581395348837"; depth 129 ; unknown ; N/A GL192436.1 samtools variation 2169885 2169885 . . . alleles " G A"; frequencies " 0.744186046511628 0.255813953488372"; depth 86 ; unknown ; N/A GL192436.1 samtools variation 2170784 2170784 . . . alleles " T C"; frequencies " 0.55188679245283 0.44811320754717"; depth 848 ; unknown ; synonymous GL192436.1 samtools variation 2173404 2173404 . . . alleles " T C"; frequencies " 0.527675276752767 0.472324723247232"; depth 813 ; known ; non-synonymous GL192436.1 samtools variation 2174000 2174000 . . . alleles " T G"; frequencies " 0.456204379562044 0.543795620437956"; depth 274 ; unknown ; N/A GL192436.1 samtools variation 2174714 2174714 . . . alleles " T C"; frequencies " 0.720261437908497 0.279738562091503"; depth 765 ; unknown ; synonymous GL192436.1 samtools variation 2174725 2174725 . . . alleles " T C"; frequencies " 0.675059952038369 0.324940047961631"; depth 834 ; unknown ; non-synonymous GL192436.1 samtools variation 2174773 2174773 . . . alleles " C T"; frequencies " 0.625990491283677 0.374009508716323"; depth 1262 ; unknown ; non-synonymous GL192436.1 samtools variation 2174778 2174778 . . . alleles " G A"; frequencies " 0.494080505130229 0.505919494869771"; depth 1267 ; unknown ; non-synonymous GL192436.1 samtools variation 2175763 2175763 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192436.1 samtools variation 2175883 2175883 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192436.1 samtools variation 2176142 2176142 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192436.1 samtools variation 2178903 2178903 . . . alleles " T C"; frequencies " 0.793103448275862 0.206896551724138"; depth 58 ; unknown ; N/A GL192436.1 samtools variation 2345148 2345148 . . . alleles " A C"; frequencies " 0.638709677419355 0.361290322580645"; depth 155 ; unknown ; N/A GL192436.1 samtools variation 2345774 2345774 . . . alleles " C T"; frequencies " 0.560606060606061 0.439393939393939"; depth 132 ; unknown ; N/A GL192436.1 samtools variation 2347999 2347999 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192436.1 samtools variation 2350393 2350393 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192436.1 samtools variation 2355766 2355766 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192436.1 samtools variation 2356594 2356594 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192436.1 samtools variation 2393003 2393003 . . . alleles " C A"; frequencies " 0.33112582781457 0.66887417218543"; depth 151 ; known ; N/A GL192437.1 samtools variation 155031 155031 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192437.1 samtools variation 375430 375430 . . . alleles " G T"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; unknown ; N/A GL192437.1 samtools variation 375937 375937 . . . alleles " T C"; frequencies " 0.796296296296296 0.203703703703704"; depth 162 ; unknown ; N/A GL192437.1 samtools variation 376373 376373 . . . alleles " A G"; frequencies " 0.610169491525424 0.389830508474576"; depth 59 ; unknown ; N/A GL192437.1 samtools variation 443947 443947 . . . alleles " A T"; frequencies " 0.324324324324324 0.675675675675676"; depth 37 ; unknown ; N/A GL192437.1 samtools variation 444607 444607 . . . alleles " C T"; frequencies " 0.471518987341772 0.528481012658228"; depth 316 ; unknown ; N/A GL192437.1 samtools variation 444910 444910 . . . alleles " G A"; frequencies " 0.354166666666667 0.645833333333333"; depth 96 ; unknown ; N/A GL192437.1 samtools variation 445572 445572 . . . alleles " T C"; frequencies " 0.293478260869565 0.706521739130435"; depth 92 ; unknown ; N/A GL192437.1 samtools variation 446237 446237 . . . alleles " T C"; frequencies " 0.472972972972973 0.527027027027027"; depth 74 ; unknown ; N/A GL192437.1 samtools variation 446835 446835 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192437.1 samtools variation 448272 448272 . . . alleles " A C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192437.1 samtools variation 448386 448386 . . . alleles " T A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192437.1 samtools variation 449409 449409 . . . alleles " A G"; frequencies " 0.382978723404255 0.617021276595745"; depth 47 ; known ; N/A GL192437.1 samtools variation 449425 449425 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 45 ; unknown ; N/A GL192437.1 samtools variation 450466 450466 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192437.1 samtools variation 450623 450623 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 56 ; known ; N/A GL192437.1 samtools variation 452417 452417 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192437.1 samtools variation 452607 452607 . . . alleles " G C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192437.1 samtools variation 454510 454510 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192437.1 samtools variation 456593 456593 . . . alleles " C T"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; known ; N/A GL192437.1 samtools variation 471914 471914 . . . alleles " T C"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; N/A GL192437.1 samtools variation 473613 473613 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192437.1 samtools variation 474468 474468 . . . alleles " C T"; frequencies " 0.382352941176471 0.617647058823529"; depth 68 ; known ; synonymous GL192437.1 samtools variation 474475 474475 . . . alleles " T C"; frequencies " 0.394366197183099 0.605633802816901"; depth 71 ; known ; non-synonymous GL192437.1 samtools variation 479996 479996 . . . alleles " C T"; frequencies " 0.373134328358209 0.626865671641791"; depth 67 ; known ; non-synonymous GL192437.1 samtools variation 480095 480095 . . . alleles " C T"; frequencies " 0.564102564102564 0.435897435897436"; depth 39 ; known ; non-synonymous GL192437.1 samtools variation 481479 481479 . . . alleles " G C"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; known ; non-synonymous GL192437.1 samtools variation 490093 490093 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; non-synonymous GL192437.1 samtools variation 491830 491830 . . . alleles " C T"; frequencies " 0.452380952380952 0.547619047619048"; depth 42 ; known ; non-synonymous GL192437.1 samtools variation 567165 567165 . . . alleles " C T"; frequencies " 0.775 0.225"; depth 120 ; unknown ; synonymous GL192437.1 samtools variation 580290 580290 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192437.1 samtools variation 581322 581322 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192437.1 samtools variation 581473 581473 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192437.1 samtools variation 635910 635910 . . . alleles " G A"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; non-synonymous GL192437.1 samtools variation 640353 640353 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192437.1 samtools variation 692320 692320 . . . alleles " C A"; frequencies " 0.63448275862069 0.36551724137931"; depth 145 ; unknown ; synonymous GL192437.1 samtools variation 781829 781829 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192437.1 samtools variation 825864 825864 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 42 ; unknown ; synonymous GL192437.1 samtools variation 832413 832413 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 20 ; unknown ; synonymous GL192437.1 samtools variation 918865 918865 . . . alleles " A G"; frequencies " 0.490740740740741 0.509259259259259"; depth 108 ; unknown ; N/A GL192437.1 samtools variation 919293 919293 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 35 ; unknown ; N/A GL192437.1 samtools variation 919915 919915 . . . alleles " C T"; frequencies " 0.416058394160584 0.583941605839416"; depth 137 ; unknown ; N/A GL192437.1 samtools variation 921061 921061 . . . alleles " G A"; frequencies " 0.704918032786885 0.295081967213115"; depth 61 ; unknown ; N/A GL192437.1 samtools variation 924221 924221 . . . alleles " G A"; frequencies " 0.423076923076923 0.538461538461538"; depth 26 ; unknown ; N/A GL192437.1 samtools variation 943681 943681 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 40 ; unknown ; synonymous GL192437.1 samtools variation 958901 958901 . . . alleles " T C"; frequencies " 0.661971830985915 0.338028169014085"; depth 71 ; unknown ; synonymous GL192437.1 samtools variation 958909 958909 . . . alleles " C T"; frequencies " 0.63768115942029 0.36231884057971"; depth 69 ; unknown ; non-synonymous GL192437.1 samtools variation 958946 958946 . . . alleles " A G"; frequencies " 0.524590163934426 0.475409836065574"; depth 61 ; unknown ; synonymous GL192437.1 samtools variation 967187 967187 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192437.1 samtools variation 994593 994593 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; synonymous GL192437.1 samtools variation 994661 994661 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; non-synonymous GL192437.1 samtools variation 1197699 1197699 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL192437.1 samtools variation 1247002 1247002 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192437.1 samtools variation 1386923 1386923 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; N/A GL192437.1 samtools variation 1424690 1424690 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192437.1 samtools variation 1426980 1426980 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL192437.1 samtools variation 1450796 1450796 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192437.1 samtools variation 1454750 1454750 . . . alleles " T C"; frequencies " 0.233333333333333 0.766666666666667"; depth 30 ; unknown ; N/A GL192437.1 samtools variation 1455223 1455223 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192437.1 samtools variation 1455568 1455568 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL192437.1 samtools variation 1456314 1456314 . . . alleles " A G"; frequencies " 0.27027027027027 0.72972972972973"; depth 37 ; unknown ; N/A GL192437.1 samtools variation 1457866 1457866 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 30 ; unknown ; N/A GL192437.1 samtools variation 1457920 1457920 . . . alleles " C A"; frequencies " 0.375 0.625"; depth 32 ; unknown ; N/A GL192437.1 samtools variation 1458304 1458304 . . . alleles " A G"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192437.1 samtools variation 1468022 1468022 . . . alleles " A C"; frequencies " 0.309090909090909 0.690909090909091"; depth 385 ; unknown ; N/A GL192437.1 samtools variation 1469951 1469951 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192437.1 samtools variation 1471561 1471561 . . . alleles " T C"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL192437.1 samtools variation 1471774 1471774 . . . alleles " A C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192437.1 samtools variation 1473505 1473505 . . . alleles " C T"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL192437.1 samtools variation 1473943 1473943 . . . alleles " C T"; frequencies " 0.492063492063492 0.507936507936508"; depth 63 ; unknown ; N/A GL192437.1 samtools variation 1474575 1474575 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192437.1 samtools variation 1474666 1474666 . . . alleles " T A"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL192437.1 samtools variation 1478821 1478821 . . . alleles " G A"; frequencies " 0.798245614035088 0.201754385964912"; depth 114 ; unknown ; N/A GL192437.1 samtools variation 1479422 1479422 . . . alleles " T C"; frequencies " 0.208791208791209 0.791208791208791"; depth 182 ; unknown ; N/A GL192437.1 samtools variation 1479502 1479502 . . . alleles " G C"; frequencies " 0.707692307692308 0.292307692307692"; depth 195 ; unknown ; N/A GL192437.1 samtools variation 1479554 1479554 . . . alleles " C G"; frequencies " 0.722627737226277 0.277372262773723"; depth 137 ; unknown ; N/A GL192437.1 samtools variation 1479666 1479666 . . . alleles " C G"; frequencies " 0.357446808510638 0.638297872340426"; depth 235 ; unknown ; N/A GL192437.1 samtools variation 1479853 1479853 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192437.1 samtools variation 1482246 1482246 . . . alleles " G C"; frequencies " 0.257142857142857 0.742857142857143"; depth 35 ; unknown ; N/A GL192437.1 samtools variation 1484175 1484175 . . . alleles " G A"; frequencies " 0.704545454545455 0.295454545454545"; depth 88 ; unknown ; synonymous GL192437.1 samtools variation 1503196 1503196 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; synonymous GL192437.1 samtools variation 1715913 1715913 . . . alleles " A G"; frequencies " 0.792792792792793 0.207207207207207"; depth 111 ; unknown ; N/A GL192437.1 samtools variation 1716956 1716956 . . . alleles " G T"; frequencies " 0.76271186440678 0.23728813559322"; depth 59 ; unknown ; N/A GL192437.1 samtools variation 1718750 1718750 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192437.1 samtools variation 1719282 1719282 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192437.1 samtools variation 1719944 1719944 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; N/A GL192437.1 samtools variation 1721097 1721097 . . . alleles " A G"; frequencies " 0.480519480519481 0.519480519480519"; depth 77 ; unknown ; N/A GL192437.1 samtools variation 1721530 1721530 . . . alleles " G A"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL192437.1 samtools variation 1721870 1721870 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 35 ; unknown ; N/A GL192437.1 samtools variation 1723145 1723145 . . . alleles " T G"; frequencies " 0.785714285714286 0.214285714285714"; depth 140 ; unknown ; non-synonymous GL192437.1 samtools variation 1748661 1748661 . . . alleles " A G"; frequencies " 0.280612244897959 0.719387755102041"; depth 196 ; unknown ; synonymous GL192437.1 samtools variation 1767628 1767628 . . . alleles " T C"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL192437.1 samtools variation 1829505 1829505 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192437.1 samtools variation 1839893 1839893 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192437.1 samtools variation 1841727 1841727 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192437.1 samtools variation 1841802 1841802 . . . alleles " T C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192437.1 samtools variation 1854524 1854524 . . . alleles " T C"; frequencies " 0.341772151898734 0.658227848101266"; depth 158 ; unknown ; N/A GL192437.1 samtools variation 1896893 1896893 . . . alleles " A C"; frequencies " 0.306451612903226 0.693548387096774"; depth 62 ; unknown ; synonymous GL192437.1 samtools variation 1923387 1923387 . . . alleles " C T"; frequencies " 0.78125 0.21875"; depth 128 ; unknown ; non-synonymous GL192437.1 samtools variation 1998292 1998292 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 75 ; unknown ; N/A GL192437.1 samtools variation 1998965 1998965 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192437.1 samtools variation 2216173 2216173 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192437.1 samtools variation 2228596 2228596 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 66 ; unknown ; synonymous GL192437.1 samtools variation 2236887 2236887 . . . alleles " C G"; frequencies " 0.559322033898305 0.440677966101695"; depth 59 ; unknown ; synonymous GL192437.1 samtools variation 2240131 2240131 . . . alleles " T C"; frequencies " 0.573913043478261 0.426086956521739"; depth 115 ; unknown ; non-synonymous GL192437.1 samtools variation 2248648 2248648 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192437.1 samtools variation 2249106 2249106 . . . alleles " C G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192437.1 samtools variation 2262821 2262821 . . . alleles " A G"; frequencies " 0.520795660036166 0.479204339963834"; depth 553 ; unknown ; synonymous GL192437.1 samtools variation 2275732 2275732 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192437.1 samtools variation 2281042 2281042 . . . alleles " G C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192437.1 samtools variation 2283616 2283616 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 50 ; unknown ; N/A GL192437.1 samtools variation 2287263 2287263 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192437.1 samtools variation 2287285 2287285 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192437.1 samtools variation 2289472 2289472 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192437.1 samtools variation 2289922 2289922 . . . alleles " T C"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; unknown ; N/A GL192437.1 samtools variation 2306096 2306096 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; non-synonymous GL192437.1 samtools variation 2396689 2396689 . . . alleles " C T"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; unknown ; N/A GL192437.1 samtools variation 2468697 2468697 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192437.1 samtools variation 2470795 2470795 . . . alleles " G A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192437.1 samtools variation 2688836 2688836 . . . alleles " C A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192437.1 samtools variation 2689720 2689720 . . . alleles " A T"; frequencies " 0.490196078431373 0.509803921568627"; depth 51 ; unknown ; N/A GL192437.1 samtools variation 2689787 2689787 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 42 ; unknown ; N/A GL192437.1 samtools variation 2689915 2689915 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; unknown ; N/A GL192437.1 samtools variation 2690080 2690080 . . . alleles " A G"; frequencies " 0.466448445171849 0.533551554828151"; depth 611 ; unknown ; synonymous GL192437.1 samtools variation 2698185 2698185 . . . alleles " T C"; frequencies " 0.761061946902655 0.238938053097345"; depth 113 ; unknown ; N/A GL192437.1 samtools variation 2746600 2746600 . . . alleles " C G"; frequencies " 0.777777777777778 0.222222222222222"; depth 108 ; unknown ; non-synonymous GL192438.1 samtools variation 1642683 1642683 . . . alleles " T C"; frequencies " 0.225 0.775"; depth 40 ; unknown ; N/A GL192438.1 samtools variation 1644434 1644434 . . . alleles " T C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192438.1 samtools variation 1647733 1647733 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192438.1 samtools variation 1746712 1746712 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192438.1 samtools variation 1747310 1747310 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL192438.1 samtools variation 1750196 1750196 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192438.1 samtools variation 1754293 1754293 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192438.1 samtools variation 1842808 1842808 . . . alleles " G A"; frequencies " 0.745454545454545 0.254545454545455"; depth 55 ; unknown ; N/A GL192438.1 samtools variation 1863783 1863783 . . . alleles " A C"; frequencies " 0.615384615384615 0.384615384615385"; depth 39 ; unknown ; synonymous GL192438.1 samtools variation 1883012 1883012 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 48 ; unknown ; synonymous GL192438.1 samtools variation 2292234 2292234 . . . alleles " T A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192438.1 samtools variation 2293921 2293921 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192438.1 samtools variation 2318325 2318325 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192438.1 samtools variation 2740473 2740473 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; synonymous GL192438.1 samtools variation 2744475 2744475 . . . alleles " C G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; synonymous GL192438.1 samtools variation 2760657 2760657 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; synonymous GL192438.1 samtools variation 2774835 2774835 . . . alleles " G A"; frequencies " 0.369565217391304 0.630434782608696"; depth 46 ; unknown ; synonymous GL192438.1 samtools variation 2774862 2774862 . . . alleles " A G"; frequencies " 0.270833333333333 0.729166666666667"; depth 48 ; known ; synonymous GL192438.1 samtools variation 2794210 2794210 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192438.1 samtools variation 2798700 2798700 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL192439.1 samtools variation 77631 77631 . . . alleles " T C"; frequencies " 0.742857142857143 0.257142857142857"; depth 105 ; known ; N/A GL192439.1 samtools variation 158767 158767 . . . alleles " T A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192439.1 samtools variation 175052 175052 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192439.1 samtools variation 177881 177881 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192439.1 samtools variation 181140 181140 . . . alleles " A G"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192439.1 samtools variation 255900 255900 . . . alleles " C T"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; synonymous GL192439.1 samtools variation 289782 289782 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 176 ; known ; N/A GL192439.1 samtools variation 413070 413070 . . . alleles " A G"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; unknown ; N/A GL192439.1 samtools variation 417860 417860 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192439.1 samtools variation 418952 418952 . . . alleles " T A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192439.1 samtools variation 457757 457757 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192439.1 samtools variation 1006398 1006398 . . . alleles " G A"; frequencies " 0.70863309352518 0.29136690647482"; depth 278 ; unknown ; N/A GL192439.1 samtools variation 1089788 1089788 . . . alleles " C T"; frequencies " 0.427631578947368 0.572368421052632"; depth 152 ; unknown ; non-synonymous GL192439.1 samtools variation 1093949 1093949 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192439.1 samtools variation 1096437 1096437 . . . alleles " T C"; frequencies " 0.432038834951456 0.567961165048544"; depth 206 ; unknown ; synonymous GL192439.1 samtools variation 1096543 1096543 . . . alleles " A G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192439.1 samtools variation 1096860 1096860 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192439.1 samtools variation 1096947 1096947 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; N/A GL192439.1 samtools variation 1097013 1097013 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL192439.1 samtools variation 1099705 1099705 . . . alleles " T C"; frequencies " 0.507537688442211 0.492462311557789"; depth 199 ; unknown ; synonymous GL192439.1 samtools variation 1099950 1099950 . . . alleles " T G"; frequencies " 0.446428571428571 0.553571428571429"; depth 56 ; known ; N/A GL192439.1 samtools variation 1099968 1099968 . . . alleles " G A"; frequencies " 0.62 0.38"; depth 50 ; known ; N/A GL192439.1 samtools variation 1100229 1100229 . . . alleles " C T"; frequencies " 0.786585365853659 0.213414634146341"; depth 164 ; unknown ; N/A GL192439.1 samtools variation 1100481 1100481 . . . alleles " G A"; frequencies " 0.258620689655172 0.741379310344828"; depth 232 ; known ; N/A GL192439.1 samtools variation 1101008 1101008 . . . alleles " G T"; frequencies " 0.285714285714286 0.714285714285714"; depth 91 ; known ; N/A GL192439.1 samtools variation 1101015 1101015 . . . alleles " T C"; frequencies " 0.242105263157895 0.757894736842105"; depth 95 ; known ; N/A GL192439.1 samtools variation 1101269 1101269 . . . alleles " C T"; frequencies " 0.712765957446808 0.287234042553192"; depth 94 ; unknown ; N/A GL192439.1 samtools variation 1101270 1101270 . . . alleles " G A"; frequencies " 0.729166666666667 0.270833333333333"; depth 96 ; known ; N/A GL192439.1 samtools variation 1101284 1101284 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 51 ; known ; N/A GL192439.1 samtools variation 1101326 1101326 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 50 ; unknown ; N/A GL192439.1 samtools variation 1101496 1101496 . . . alleles " C T"; frequencies " 0.385416666666667 0.614583333333333"; depth 96 ; known ; N/A GL192439.1 samtools variation 1101568 1101568 . . . alleles " G A"; frequencies " 0.354430379746835 0.645569620253165"; depth 79 ; known ; N/A GL192439.1 samtools variation 1101965 1101965 . . . alleles " G A"; frequencies " 0.673913043478261 0.326086956521739"; depth 46 ; unknown ; N/A GL192439.1 samtools variation 1102119 1102119 . . . alleles " T C"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL192439.1 samtools variation 1102655 1102655 . . . alleles " A G"; frequencies " 0.486842105263158 0.513157894736842"; depth 228 ; unknown ; N/A GL192439.1 samtools variation 1111393 1111393 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 50 ; unknown ; N/A GL192439.1 samtools variation 1111547 1111547 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; unknown ; N/A GL192439.1 samtools variation 1112083 1112083 . . . alleles " A G"; frequencies " 0.504504504504504 0.495495495495495"; depth 222 ; unknown ; N/A GL192439.1 samtools variation 1124090 1124090 . . . alleles " C T"; frequencies " 0.73943661971831 0.26056338028169"; depth 142 ; unknown ; N/A GL192439.1 samtools variation 1124125 1124125 . . . alleles " A G"; frequencies " 0.592814371257485 0.407185628742515"; depth 167 ; known ; N/A GL192439.1 samtools variation 1124578 1124578 . . . alleles " A G"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; N/A GL192439.1 samtools variation 1124681 1124681 . . . alleles " G T"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL192439.1 samtools variation 1125573 1125573 . . . alleles " C T"; frequencies " 0.75609756097561 0.24390243902439"; depth 82 ; unknown ; N/A GL192439.1 samtools variation 1126462 1126462 . . . alleles " A G"; frequencies " 0.641509433962264 0.358490566037736"; depth 53 ; unknown ; N/A GL192439.1 samtools variation 1126597 1126597 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192439.1 samtools variation 1128901 1128901 . . . alleles " C T"; frequencies " 0.776315789473684 0.223684210526316"; depth 76 ; unknown ; N/A GL192439.1 samtools variation 1128916 1128916 . . . alleles " A G"; frequencies " 0.618421052631579 0.381578947368421"; depth 76 ; known ; N/A GL192439.1 samtools variation 1140005 1140005 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; known ; non-synonymous GL192439.1 samtools variation 1145324 1145324 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192439.1 samtools variation 1146554 1146554 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192439.1 samtools variation 1148239 1148239 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; synonymous GL192439.1 samtools variation 1548702 1548702 . . . alleles " A G"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; known ; N/A GL192439.1 samtools variation 1549370 1549370 . . . alleles " C G"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL192439.1 samtools variation 1549378 1549378 . . . alleles " A G"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; known ; N/A GL192439.1 samtools variation 1689031 1689031 . . . alleles " A G"; frequencies " 0.68695652173913 0.31304347826087"; depth 115 ; unknown ; N/A GL192439.1 samtools variation 1753784 1753784 . . . alleles " T C"; frequencies " 0.506849315068493 0.493150684931507"; depth 73 ; known ; synonymous GL192439.1 samtools variation 1765874 1765874 . . . alleles " C T"; frequencies " 0.482142857142857 0.517857142857143"; depth 56 ; known ; synonymous GL192439.1 samtools variation 1822971 1822971 . . . alleles " C T"; frequencies " 0.513513513513513 0.486486486486487"; depth 74 ; known ; N/A GL192439.1 samtools variation 1823016 1823016 . . . alleles " A G"; frequencies " 0.491525423728814 0.508474576271186"; depth 59 ; known ; N/A GL192439.1 samtools variation 1823494 1823494 . . . alleles " T C"; frequencies " 0.339285714285714 0.660714285714286"; depth 56 ; known ; N/A GL192439.1 samtools variation 1823556 1823556 . . . alleles " G C"; frequencies " 0.327586206896552 0.672413793103448"; depth 58 ; known ; N/A GL192439.1 samtools variation 1823735 1823735 . . . alleles " C G"; frequencies " 0.512820512820513 0.487179487179487"; depth 39 ; known ; N/A GL192439.1 samtools variation 1824112 1824112 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; known ; synonymous GL192439.1 samtools variation 1824145 1824145 . . . alleles " A G"; frequencies " 0.413793103448276 0.586206896551724"; depth 58 ; known ; synonymous GL192439.1 samtools variation 1826327 1826327 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192439.1 samtools variation 1829754 1829754 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192439.1 samtools variation 1838972 1838972 . . . alleles " C A"; frequencies " 0.518518518518518 0.481481481481481"; depth 54 ; known ; non-synonymous GL192439.1 samtools variation 1839536 1839536 . . . alleles " A G"; frequencies " 0.71875 0.28125"; depth 32 ; known ; synonymous GL192439.1 samtools variation 1846026 1846026 . . . alleles " T C"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; synonymous GL192439.1 samtools variation 1847239 1847239 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; non-synonymous GL192439.1 samtools variation 1859752 1859752 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 65 ; unknown ; N/A GL192439.1 samtools variation 1877994 1877994 . . . alleles " G A"; frequencies " 0.731182795698925 0.268817204301075"; depth 93 ; known ; N/A GL192439.1 samtools variation 1878037 1878037 . . . alleles " G C"; frequencies " 0.757009345794392 0.242990654205607"; depth 107 ; unknown ; non-synonymous GL192439.1 samtools variation 1882199 1882199 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192439.1 samtools variation 1882335 1882335 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192439.1 samtools variation 1895875 1895875 . . . alleles " C T"; frequencies " 0.703703703703704 0.296296296296296"; depth 54 ; known ; N/A GL192439.1 samtools variation 1902606 1902606 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL192439.1 samtools variation 1903067 1903067 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192439.1 samtools variation 1903431 1903431 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; known ; N/A GL192439.1 samtools variation 1903642 1903642 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; known ; N/A GL192439.1 samtools variation 1904409 1904409 . . . alleles " T C"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; unknown ; N/A GL192439.1 samtools variation 1905516 1905516 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 70 ; known ; N/A GL192439.1 samtools variation 1905892 1905892 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192439.1 samtools variation 1905909 1905909 . . . alleles " T C"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL192439.1 samtools variation 1908222 1908222 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192439.1 samtools variation 1909528 1909528 . . . alleles " T G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192439.1 samtools variation 1911257 1911257 . . . alleles " A G"; frequencies " 0.36231884057971 0.63768115942029"; depth 69 ; known ; N/A GL192439.1 samtools variation 1913140 1913140 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; known ; N/A GL192439.1 samtools variation 1913930 1913930 . . . alleles " G C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192439.1 samtools variation 1917670 1917670 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192439.1 samtools variation 1924494 1924494 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192439.1 samtools variation 2021526 2021526 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192439.1 samtools variation 2047276 2047276 . . . alleles " T A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192439.1 samtools variation 2070539 2070539 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192439.1 samtools variation 2128578 2128578 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192439.1 samtools variation 2186348 2186348 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; synonymous GL192439.1 samtools variation 2222486 2222486 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; synonymous GL192439.1 samtools variation 2343237 2343237 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 40 ; unknown ; non-synonymous GL192439.1 samtools variation 2344421 2344421 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192439.1 samtools variation 2344773 2344773 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192439.1 samtools variation 2346343 2346343 . . . alleles " G T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192439.1 samtools variation 2346893 2346893 . . . alleles " C G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192439.1 samtools variation 2347479 2347479 . . . alleles " C G"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; known ; N/A GL192439.1 samtools variation 2347741 2347741 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192439.1 samtools variation 2510026 2510026 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; synonymous GL192439.1 samtools variation 2767157 2767157 . . . alleles " G A"; frequencies " 0.577981651376147 0.422018348623853"; depth 109 ; known ; N/A GL192439.1 samtools variation 2767657 2767657 . . . alleles " C T"; frequencies " 0.446808510638298 0.553191489361702"; depth 47 ; known ; N/A GL192439.1 samtools variation 2767730 2767730 . . . alleles " C A"; frequencies " 0.282051282051282 0.717948717948718"; depth 39 ; known ; N/A GL192439.1 samtools variation 2767768 2767768 . . . alleles " G A"; frequencies " 0.781818181818182 0.218181818181818"; depth 55 ; known ; N/A GL192439.1 samtools variation 2768062 2768062 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL192439.1 samtools variation 2768908 2768908 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 52 ; known ; synonymous GL192440.1 samtools variation 577991 577991 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192440.1 samtools variation 655851 655851 . . . alleles " A G"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; unknown ; N/A GL192440.1 samtools variation 655868 655868 . . . alleles " C T"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL192440.1 samtools variation 656539 656539 . . . alleles " A G"; frequencies " 0.770114942528736 0.229885057471264"; depth 87 ; unknown ; N/A GL192440.1 samtools variation 656909 656909 . . . alleles " A C"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; unknown ; N/A GL192440.1 samtools variation 658495 658495 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192440.1 samtools variation 661820 661820 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192440.1 samtools variation 667987 667987 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL192440.1 samtools variation 670443 670443 . . . alleles " T G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192440.1 samtools variation 670464 670464 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192440.1 samtools variation 672172 672172 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192440.1 samtools variation 674913 674913 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192440.1 samtools variation 675051 675051 . . . alleles " G A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192440.1 samtools variation 678626 678626 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192440.1 samtools variation 679231 679231 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192440.1 samtools variation 685137 685137 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL192440.1 samtools variation 689502 689502 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192440.1 samtools variation 697346 697346 . . . alleles " T C"; frequencies " 0.786885245901639 0.213114754098361"; depth 61 ; unknown ; synonymous GL192440.1 samtools variation 1126990 1126990 . . . alleles " G C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192440.1 samtools variation 1767493 1767493 . . . alleles " C G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192440.1 samtools variation 1877542 1877542 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 88 ; known ; N/A GL192440.1 samtools variation 1877805 1877805 . . . alleles " C T"; frequencies " 0.662162162162162 0.337837837837838"; depth 74 ; known ; N/A GL192440.1 samtools variation 1883639 1883639 . . . alleles " T C"; frequencies " 0.622047244094488 0.377952755905512"; depth 127 ; known ; synonymous GL192440.1 samtools variation 1891268 1891268 . . . alleles " C T"; frequencies " 0.710758377425044 0.289241622574956"; depth 567 ; known ; synonymous GL192440.1 samtools variation 1900691 1900691 . . . alleles " T C"; frequencies " 0.673684210526316 0.326315789473684"; depth 190 ; unknown ; N/A GL192440.1 samtools variation 1920094 1920094 . . . alleles " A G"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192440.1 samtools variation 2125604 2125604 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192440.1 samtools variation 2146678 2146678 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192440.1 samtools variation 2146750 2146750 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192440.1 samtools variation 2167605 2167605 . . . alleles " C T"; frequencies " 0.664705882352941 0.335294117647059"; depth 170 ; unknown ; synonymous GL192440.1 samtools variation 2167707 2167707 . . . alleles " A G"; frequencies " 0.638888888888889 0.361111111111111"; depth 144 ; unknown ; N/A GL192440.1 samtools variation 2177834 2177834 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192440.1 samtools variation 2178296 2178296 . . . alleles " A C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192440.1 samtools variation 2185511 2185511 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192440.1 samtools variation 2186186 2186186 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192440.1 samtools variation 2186427 2186427 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192440.1 samtools variation 2187204 2187204 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL192440.1 samtools variation 2347292 2347292 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192440.1 samtools variation 2490810 2490810 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192440.1 samtools variation 2491388 2491388 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL192440.1 samtools variation 2493409 2493409 . . . alleles " G A"; frequencies " 0.728813559322034 0.271186440677966"; depth 118 ; unknown ; N/A GL192440.1 samtools variation 2493558 2493558 . . . alleles " C T"; frequencies " 0.532467532467532 0.467532467532468"; depth 77 ; known ; N/A GL192440.1 samtools variation 2523315 2523315 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192440.1 samtools variation 2703377 2703377 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192440.1 samtools variation 2708545 2708545 . . . alleles " C T"; frequencies " 0.431372549019608 0.568627450980392"; depth 51 ; unknown ; N/A GL192441.1 samtools variation 248030 248030 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192441.1 samtools variation 250226 250226 . . . alleles " A G"; frequencies " 0.689655172413793 0.310344827586207"; depth 58 ; unknown ; N/A GL192441.1 samtools variation 260464 260464 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 33 ; known ; non-synonymous GL192441.1 samtools variation 266597 266597 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192441.1 samtools variation 362872 362872 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; synonymous GL192441.1 samtools variation 401040 401040 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; known ; N/A GL192441.1 samtools variation 946806 946806 . . . alleles " C T"; frequencies " 0.573604060913706 0.426395939086294"; depth 197 ; known ; synonymous GL192441.1 samtools variation 947577 947577 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192441.1 samtools variation 966527 966527 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192441.1 samtools variation 966579 966579 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192441.1 samtools variation 981894 981894 . . . alleles " C A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192441.1 samtools variation 992388 992388 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192441.1 samtools variation 1028235 1028235 . . . alleles " C A"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL192441.1 samtools variation 1180076 1180076 . . . alleles " A T"; frequencies " 0.691099476439791 0.308900523560209"; depth 764 ; known ; synonymous GL192441.1 samtools variation 1187002 1187002 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192441.1 samtools variation 1195995 1195995 . . . alleles " C T"; frequencies " 0.513513513513513 0.486486486486487"; depth 37 ; unknown ; N/A GL192441.1 samtools variation 1210750 1210750 . . . alleles " C T"; frequencies " 0.320754716981132 0.679245283018868"; depth 53 ; unknown ; N/A GL192441.1 samtools variation 1212778 1212778 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192441.1 samtools variation 1228823 1228823 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL192441.1 samtools variation 2396885 2396885 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192441.1 samtools variation 2398070 2398070 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192441.1 samtools variation 2563469 2563469 . . . alleles " T C"; frequencies " 0.72463768115942 0.27536231884058"; depth 69 ; unknown ; non-synonymous GL192441.1 samtools variation 2564193 2564193 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192441.1 samtools variation 2579192 2579192 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192441.1 samtools variation 2615576 2615576 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192442.1 samtools variation 14429 14429 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; non-synonymous GL192442.1 samtools variation 14439 14439 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; non-synonymous GL192442.1 samtools variation 53053 53053 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 56 ; unknown ; N/A GL192442.1 samtools variation 77924 77924 . . . alleles " G T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192442.1 samtools variation 91946 91946 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192442.1 samtools variation 92856 92856 . . . alleles " A G"; frequencies " 0.48 0.52"; depth 25 ; known ; N/A GL192442.1 samtools variation 92928 92928 . . . alleles " A T"; frequencies " 0.45 0.55"; depth 40 ; known ; N/A GL192442.1 samtools variation 94834 94834 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192442.1 samtools variation 99149 99149 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192442.1 samtools variation 102302 102302 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; unknown ; N/A GL192442.1 samtools variation 102303 102303 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; unknown ; N/A GL192442.1 samtools variation 103147 103147 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL192442.1 samtools variation 107593 107593 . . . alleles " A G"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; known ; N/A GL192442.1 samtools variation 108994 108994 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192442.1 samtools variation 109864 109864 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 51 ; known ; N/A GL192442.1 samtools variation 110591 110591 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192442.1 samtools variation 110613 110613 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192442.1 samtools variation 110960 110960 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; known ; N/A GL192442.1 samtools variation 113036 113036 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL192442.1 samtools variation 114741 114741 . . . alleles " C T"; frequencies " 0.650485436893204 0.349514563106796"; depth 103 ; unknown ; N/A GL192442.1 samtools variation 114742 114742 . . . alleles " A G"; frequencies " 0.63 0.37"; depth 100 ; unknown ; N/A GL192442.1 samtools variation 114800 114800 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 115 ; known ; N/A GL192442.1 samtools variation 115746 115746 . . . alleles " T A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; known ; N/A GL192442.1 samtools variation 117423 117423 . . . alleles " G T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192442.1 samtools variation 118237 118237 . . . alleles " A T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL192442.1 samtools variation 118542 118542 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192442.1 samtools variation 118599 118599 . . . alleles " A T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192442.1 samtools variation 119001 119001 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192442.1 samtools variation 119699 119699 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192442.1 samtools variation 119930 119930 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192442.1 samtools variation 121704 121704 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; known ; N/A GL192442.1 samtools variation 127371 127371 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL192442.1 samtools variation 131026 131026 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192442.1 samtools variation 157503 157503 . . . alleles " T C"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; known ; N/A GL192442.1 samtools variation 317667 317667 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL192442.1 samtools variation 580531 580531 . . . alleles " C T"; frequencies " 0.62962962962963 0.37037037037037"; depth 54 ; known ; synonymous GL192442.1 samtools variation 581656 581656 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192442.1 samtools variation 582721 582721 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192442.1 samtools variation 583854 583854 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 80 ; unknown ; N/A GL192442.1 samtools variation 585367 585367 . . . alleles " A G"; frequencies " 0.343173431734317 0.656826568265683"; depth 271 ; known ; N/A GL192442.1 samtools variation 590767 590767 . . . alleles " A C"; frequencies " 0.523809523809524 0.476190476190476"; depth 42 ; unknown ; N/A GL192442.1 samtools variation 590896 590896 . . . alleles " G T"; frequencies " 0.627450980392157 0.372549019607843"; depth 51 ; unknown ; N/A GL192442.1 samtools variation 591185 591185 . . . alleles " G A"; frequencies " 0.59 0.41"; depth 100 ; unknown ; synonymous GL192442.1 samtools variation 592068 592068 . . . alleles " G C"; frequencies " 0.556701030927835 0.443298969072165"; depth 97 ; unknown ; non-synonymous GL192442.1 samtools variation 597278 597278 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192442.1 samtools variation 653407 653407 . . . alleles " G A"; frequencies " 0.72972972972973 0.27027027027027"; depth 111 ; unknown ; N/A GL192442.1 samtools variation 661967 661967 . . . alleles " T G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192442.1 samtools variation 670538 670538 . . . alleles " C T"; frequencies " 0.662650602409639 0.337349397590361"; depth 83 ; unknown ; non-synonymous GL192442.1 samtools variation 697602 697602 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 54 ; unknown ; synonymous GL192442.1 samtools variation 1003547 1003547 . . . alleles " C T"; frequencies " 0.767857142857143 0.232142857142857"; depth 112 ; unknown ; N/A GL192442.1 samtools variation 1003609 1003609 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 80 ; unknown ; N/A GL192442.1 samtools variation 1004277 1004277 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192442.1 samtools variation 1149174 1149174 . . . alleles " G T"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; synonymous GL192442.1 samtools variation 1355099 1355099 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; synonymous GL192442.1 samtools variation 1355825 1355825 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; synonymous GL192442.1 samtools variation 1357329 1357329 . . . alleles " C A"; frequencies " 0.285714285714286 0.714285714285714"; depth 35 ; unknown ; non-synonymous GL192442.1 samtools variation 1357668 1357668 . . . alleles " G A"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL192442.1 samtools variation 1366061 1366061 . . . alleles " C T"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; unknown ; N/A GL192442.1 samtools variation 1366158 1366158 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192442.1 samtools variation 1366245 1366245 . . . alleles " G A"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192442.1 samtools variation 1366642 1366642 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192442.1 samtools variation 1366656 1366656 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192442.1 samtools variation 1366681 1366681 . . . alleles " C A"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192442.1 samtools variation 1366697 1366697 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL192442.1 samtools variation 1370349 1370349 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192442.1 samtools variation 1370873 1370873 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192442.1 samtools variation 1370922 1370922 . . . alleles " C A"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL192442.1 samtools variation 1371119 1371119 . . . alleles " G A"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192442.1 samtools variation 1371144 1371144 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192442.1 samtools variation 1371329 1371329 . . . alleles " C G"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; N/A GL192442.1 samtools variation 1371429 1371429 . . . alleles " A T"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192442.1 samtools variation 1371434 1371434 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192442.1 samtools variation 1384760 1384760 . . . alleles " C T"; frequencies " 0.351219512195122 0.648780487804878"; depth 205 ; unknown ; N/A GL192442.1 samtools variation 1390495 1390495 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192442.1 samtools variation 1391439 1391439 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192442.1 samtools variation 1391551 1391551 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192442.1 samtools variation 1392348 1392348 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192442.1 samtools variation 1402538 1402538 . . . alleles " C T"; frequencies " 0.45 0.55"; depth 20 ; unknown ; synonymous GL192442.1 samtools variation 1899808 1899808 . . . alleles " A G"; frequencies " 0.548387096774194 0.451612903225806"; depth 62 ; unknown ; N/A GL192442.1 samtools variation 1899958 1899958 . . . alleles " T C"; frequencies " 0.592307692307692 0.407692307692308"; depth 130 ; unknown ; N/A GL192442.1 samtools variation 1900153 1900153 . . . alleles " G A"; frequencies " 0.608465608465608 0.391534391534392"; depth 189 ; unknown ; N/A GL192442.1 samtools variation 1901566 1901566 . . . alleles " A T"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL192442.1 samtools variation 1901718 1901718 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192442.1 samtools variation 1903625 1903625 . . . alleles " G T"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192442.1 samtools variation 1903628 1903628 . . . alleles " A C"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL192442.1 samtools variation 1904789 1904789 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192442.1 samtools variation 1912880 1912880 . . . alleles " G A"; frequencies " 0.592105263157895 0.407894736842105"; depth 76 ; unknown ; non-synonymous GL192442.1 samtools variation 1927759 1927759 . . . alleles " G A"; frequencies " 0.792899408284024 0.207100591715976"; depth 169 ; unknown ; synonymous GL192442.1 samtools variation 1972458 1972458 . . . alleles " A T"; frequencies " 0.511111111111111 0.488888888888889"; depth 45 ; known ; N/A GL192442.1 samtools variation 1972552 1972552 . . . alleles " T C"; frequencies " 0.395348837209302 0.604651162790698"; depth 43 ; known ; N/A GL192442.1 samtools variation 1972789 1972789 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192442.1 samtools variation 2034841 2034841 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; synonymous GL192442.1 samtools variation 2040810 2040810 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; unknown ; synonymous GL192442.1 samtools variation 2040864 2040864 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; synonymous GL192442.1 samtools variation 2071410 2071410 . . . alleles " A G"; frequencies " 0.40625 0.59375"; depth 32 ; unknown ; N/A GL192442.1 samtools variation 2077051 2077051 . . . alleles " T C"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192442.1 samtools variation 2085473 2085473 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192442.1 samtools variation 2190001 2190001 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192442.1 samtools variation 2228629 2228629 . . . alleles " C T"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL192442.1 samtools variation 2248602 2248602 . . . alleles " A G"; frequencies " 0.556064073226545 0.439359267734554"; depth 437 ; unknown ; synonymous GL192442.1 samtools variation 2328677 2328677 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192442.1 samtools variation 2535020 2535020 . . . alleles " C G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192442.1 samtools variation 2606890 2606890 . . . alleles " C T"; frequencies " 0.582417582417582 0.417582417582418"; depth 91 ; unknown ; synonymous GL192442.1 samtools variation 2628132 2628132 . . . alleles " T C"; frequencies " 0.582089552238806 0.417910447761194"; depth 67 ; known ; synonymous GL192442.1 samtools variation 2630405 2630405 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL192442.1 samtools variation 2630524 2630524 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192442.1 samtools variation 2630786 2630786 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 140 ; unknown ; N/A GL192442.1 samtools variation 2630825 2630825 . . . alleles " T C"; frequencies " 0.521276595744681 0.478723404255319"; depth 94 ; unknown ; N/A GL192442.1 samtools variation 2630959 2630959 . . . alleles " C G"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192442.1 samtools variation 2636185 2636185 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192442.1 samtools variation 2636221 2636221 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192442.1 samtools variation 2636274 2636274 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192442.1 samtools variation 2636415 2636415 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192442.1 samtools variation 2636479 2636479 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192442.1 samtools variation 2656225 2656225 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192442.1 samtools variation 2715174 2715174 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192442.1 samtools variation 2715191 2715191 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192442.1 samtools variation 2717651 2717651 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 12 ; known ; synonymous GL192443.1 samtools variation 1288907 1288907 . . . alleles " C A"; frequencies " 0.531914893617021 0.468085106382979"; depth 94 ; unknown ; N/A GL192443.1 samtools variation 1483903 1483903 . . . alleles " C A"; frequencies " 0.628318584070796 0.371681415929204"; depth 113 ; unknown ; N/A GL192443.1 samtools variation 1498125 1498125 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192443.1 samtools variation 1511118 1511118 . . . alleles " C A"; frequencies " 0.467213114754098 0.524590163934426"; depth 122 ; unknown ; N/A GL192443.1 samtools variation 1511806 1511806 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; unknown ; N/A GL192443.1 samtools variation 1513740 1513740 . . . alleles " A T"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL192443.1 samtools variation 1514435 1514435 . . . alleles " T C"; frequencies " 0.670212765957447 0.329787234042553"; depth 94 ; unknown ; N/A GL192443.1 samtools variation 1515889 1515889 . . . alleles " T G"; frequencies " 0.595744680851064 0.404255319148936"; depth 94 ; unknown ; N/A GL192443.1 samtools variation 1516070 1516070 . . . alleles " A G"; frequencies " 0.591549295774648 0.408450704225352"; depth 213 ; unknown ; N/A GL192443.1 samtools variation 1516248 1516248 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 182 ; unknown ; N/A GL192443.1 samtools variation 1516628 1516628 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192443.1 samtools variation 1579758 1579758 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192443.1 samtools variation 1638111 1638111 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192443.1 samtools variation 1640197 1640197 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192443.1 samtools variation 1640301 1640301 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192443.1 samtools variation 1640478 1640478 . . . alleles " A C"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; unknown ; synonymous GL192443.1 samtools variation 1652582 1652582 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192443.1 samtools variation 1655043 1655043 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 55 ; unknown ; synonymous GL192443.1 samtools variation 1655177 1655177 . . . alleles " C T"; frequencies " 0.53030303030303 0.46969696969697"; depth 66 ; unknown ; non-synonymous GL192443.1 samtools variation 1657453 1657453 . . . alleles " A G"; frequencies " 0.594594594594595 0.405405405405405"; depth 37 ; unknown ; synonymous GL192443.1 samtools variation 1663238 1663238 . . . alleles " T C"; frequencies " 0.784615384615385 0.215384615384615"; depth 65 ; unknown ; N/A GL192443.1 samtools variation 1676379 1676379 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192443.1 samtools variation 1677086 1677086 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192443.1 samtools variation 1681125 1681125 . . . alleles " A G"; frequencies " 0.766666666666667 0.233333333333333"; depth 360 ; unknown ; synonymous GL192443.1 samtools variation 1684495 1684495 . . . alleles " T A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192443.1 samtools variation 1693299 1693299 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 35 ; unknown ; N/A GL192443.1 samtools variation 1695165 1695165 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192443.1 samtools variation 1696744 1696744 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192443.1 samtools variation 1696908 1696908 . . . alleles " T C"; frequencies " 0.46734693877551 0.53265306122449"; depth 490 ; unknown ; synonymous GL192443.1 samtools variation 1696965 1696965 . . . alleles " C T"; frequencies " 0.747881355932203 0.252118644067797"; depth 472 ; unknown ; synonymous GL192443.1 samtools variation 1697164 1697164 . . . alleles " A G"; frequencies " 0.588477366255144 0.411522633744856"; depth 243 ; unknown ; synonymous GL192443.1 samtools variation 1697270 1697270 . . . alleles " A G"; frequencies " 0.732307692307692 0.267692307692308"; depth 325 ; unknown ; non-synonymous GL192443.1 samtools variation 1697275 1697275 . . . alleles " T C"; frequencies " 0.744479495268139 0.255520504731861"; depth 317 ; unknown ; synonymous GL192443.1 samtools variation 1697466 1697466 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL192443.1 samtools variation 1697481 1697481 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192443.1 samtools variation 1697844 1697844 . . . alleles " T A"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192443.1 samtools variation 1698116 1698116 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192443.1 samtools variation 1699614 1699614 . . . alleles " C T"; frequencies " 0.416149068322981 0.583850931677019"; depth 161 ; unknown ; N/A GL192443.1 samtools variation 1699937 1699937 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL192443.1 samtools variation 1700041 1700041 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 44 ; unknown ; N/A GL192443.1 samtools variation 1700112 1700112 . . . alleles " T C"; frequencies " 0.387387387387387 0.612612612612613"; depth 111 ; unknown ; N/A GL192443.1 samtools variation 1700302 1700302 . . . alleles " C G"; frequencies " 0.72420443587271 0.27579556412729"; depth 1037 ; unknown ; non-synonymous GL192443.1 samtools variation 1700426 1700426 . . . alleles " G A"; frequencies " 0.58298755186722 0.41701244813278"; depth 482 ; unknown ; non-synonymous GL192443.1 samtools variation 1700473 1700473 . . . alleles " A G"; frequencies " 0.607734806629834 0.392265193370166"; depth 362 ; unknown ; non-synonymous GL192443.1 samtools variation 1700780 1700780 . . . alleles " C T"; frequencies " 0.242424242424242 0.757575757575758"; depth 33 ; unknown ; N/A GL192443.1 samtools variation 1702063 1702063 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 916 ; unknown ; synonymous GL192443.1 samtools variation 1704207 1704207 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 28 ; unknown ; N/A GL192443.1 samtools variation 1704266 1704266 . . . alleles " T C"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; unknown ; N/A GL192443.1 samtools variation 1704365 1704365 . . . alleles " T C"; frequencies " 0.596491228070175 0.403508771929825"; depth 57 ; unknown ; N/A GL192443.1 samtools variation 1705085 1705085 . . . alleles " T C"; frequencies " 0.532467532467532 0.467532467532468"; depth 77 ; unknown ; N/A GL192443.1 samtools variation 1705203 1705203 . . . alleles " T C"; frequencies " 0.53968253968254 0.46031746031746"; depth 63 ; unknown ; N/A GL192443.1 samtools variation 1705218 1705218 . . . alleles " G A"; frequencies " 0.515625 0.484375"; depth 64 ; unknown ; N/A GL192443.1 samtools variation 1705413 1705413 . . . alleles " C T"; frequencies " 0.716684155299056 0.283315844700944"; depth 953 ; unknown ; non-synonymous GL192443.1 samtools variation 1705929 1705929 . . . alleles " T C"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; unknown ; N/A GL192443.1 samtools variation 1705956 1705956 . . . alleles " A G"; frequencies " 0.574074074074074 0.425925925925926"; depth 54 ; unknown ; N/A GL192443.1 samtools variation 1706261 1706261 . . . alleles " G T"; frequencies " 0.48 0.52"; depth 50 ; unknown ; N/A GL192443.1 samtools variation 1706935 1706935 . . . alleles " A G"; frequencies " 0.488888888888889 0.511111111111111"; depth 810 ; unknown ; synonymous GL192443.1 samtools variation 1707532 1707532 . . . alleles " A G"; frequencies " 0.735294117647059 0.264705882352941"; depth 136 ; unknown ; N/A GL192443.1 samtools variation 1709159 1709159 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192443.1 samtools variation 1709182 1709182 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192443.1 samtools variation 1709649 1709649 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 44 ; unknown ; N/A GL192443.1 samtools variation 1709898 1709898 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192443.1 samtools variation 1710024 1710024 . . . alleles " C T"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; N/A GL192443.1 samtools variation 1710175 1710175 . . . alleles " G A"; frequencies " 0.467149508535954 0.532850491464046"; depth 1933 ; unknown ; non-synonymous GL192443.1 samtools variation 1711094 1711094 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192443.1 samtools variation 1711416 1711416 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192443.1 samtools variation 1712190 1712190 . . . alleles " T G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192443.1 samtools variation 1712325 1712325 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192443.1 samtools variation 1713325 1713325 . . . alleles " G A"; frequencies " 0.682539682539683 0.317460317460317"; depth 63 ; unknown ; N/A GL192443.1 samtools variation 1713880 1713880 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192443.1 samtools variation 1714159 1714159 . . . alleles " A G"; frequencies " 0.494985673352436 0.504297994269341"; depth 1396 ; unknown ; non-synonymous GL192443.1 samtools variation 1714164 1714164 . . . alleles " A G"; frequencies " 0.531864673485445 0.468135326514555"; depth 1271 ; unknown ; synonymous GL192443.1 samtools variation 1714556 1714556 . . . alleles " C T"; frequencies " 0.775964391691395 0.224035608308605"; depth 674 ; unknown ; N/A GL192443.1 samtools variation 1715155 1715155 . . . alleles " T C"; frequencies " 0.650393700787402 0.349606299212598"; depth 635 ; unknown ; N/A GL192443.1 samtools variation 1715164 1715164 . . . alleles " A C"; frequencies " 0.624724061810154 0.375275938189845"; depth 453 ; unknown ; N/A GL192443.1 samtools variation 1715232 1715232 . . . alleles " G T"; frequencies " 0.638461538461538 0.361538461538462"; depth 390 ; unknown ; N/A GL192443.1 samtools variation 1715406 1715406 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 40 ; unknown ; N/A GL192443.1 samtools variation 1715449 1715449 . . . alleles " C G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192443.1 samtools variation 1938841 1938841 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192443.1 samtools variation 1939183 1939183 . . . alleles " A G"; frequencies " 0.612244897959184 0.387755102040816"; depth 49 ; unknown ; N/A GL192443.1 samtools variation 1939971 1939971 . . . alleles " C T"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192443.1 samtools variation 1941460 1941460 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192443.1 samtools variation 1942377 1942377 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; synonymous GL192443.1 samtools variation 2287937 2287937 . . . alleles " T G"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; N/A GL192443.1 samtools variation 2287982 2287982 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192443.1 samtools variation 2343323 2343323 . . . alleles " T C"; frequencies " 0.72318339100346 0.27681660899654"; depth 578 ; unknown ; N/A GL192443.1 samtools variation 2343429 2343429 . . . alleles " G A"; frequencies " 0.785522788203753 0.214477211796247"; depth 373 ; unknown ; N/A GL192443.1 samtools variation 2343636 2343636 . . . alleles " A G"; frequencies " 0.723809523809524 0.276190476190476"; depth 105 ; unknown ; N/A GL192443.1 samtools variation 2343694 2343694 . . . alleles " T C"; frequencies " 0.689567430025445 0.310432569974555"; depth 393 ; unknown ; N/A GL192443.1 samtools variation 2345848 2345848 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192443.1 samtools variation 2349879 2349879 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192443.1 samtools variation 2350880 2350880 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192443.1 samtools variation 2358088 2358088 . . . alleles " G A"; frequencies " 0.748651564185545 0.251348435814455"; depth 927 ; unknown ; non-synonymous GL192443.1 samtools variation 2473780 2473780 . . . alleles " T C"; frequencies " 0.461538461538462 0.461538461538462"; depth 13 ; known ; synonymous GL192443.1 samtools variation 2474499 2474499 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; known ; non-synonymous GL192443.1 samtools variation 2493733 2493733 . . . alleles " A G"; frequencies " 0.397590361445783 0.602409638554217"; depth 83 ; known ; N/A GL192443.1 samtools variation 2493833 2493833 . . . alleles " T C"; frequencies " 0.346938775510204 0.653061224489796"; depth 147 ; known ; N/A GL192443.1 samtools variation 2493840 2493840 . . . alleles " A G"; frequencies " 0.352201257861635 0.647798742138365"; depth 159 ; known ; N/A GL192443.1 samtools variation 2493897 2493897 . . . alleles " T G"; frequencies " 0.670157068062827 0.329842931937173"; depth 191 ; known ; N/A GL192443.1 samtools variation 2493975 2493975 . . . alleles " C T"; frequencies " 0.708074534161491 0.288819875776398"; depth 322 ; known ; N/A GL192443.1 samtools variation 2493987 2493987 . . . alleles " T C"; frequencies " 0.706051873198847 0.293948126801153"; depth 347 ; known ; N/A GL192443.1 samtools variation 2495058 2495058 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; N/A GL192443.1 samtools variation 2589366 2589366 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 66 ; known ; N/A GL192443.1 samtools variation 2589436 2589436 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 51 ; unknown ; N/A GL192443.1 samtools variation 2589546 2589546 . . . alleles " G A"; frequencies " 0.275 0.725"; depth 120 ; unknown ; N/A GL192443.1 samtools variation 2589758 2589758 . . . alleles " T C"; frequencies " 0.254901960784314 0.745098039215686"; depth 51 ; unknown ; N/A GL192443.1 samtools variation 2590321 2590321 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 66 ; unknown ; synonymous GL192443.1 samtools variation 2590964 2590964 . . . alleles " C A"; frequencies " 0.258064516129032 0.741935483870968"; depth 62 ; unknown ; synonymous GL192443.1 samtools variation 2614310 2614310 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192443.1 samtools variation 2614587 2614587 . . . alleles " A C"; frequencies " 0.336842105263158 0.663157894736842"; depth 95 ; unknown ; N/A GL192443.1 samtools variation 2614882 2614882 . . . alleles " G C"; frequencies " 0.3 0.7"; depth 70 ; unknown ; N/A GL192443.1 samtools variation 2618245 2618245 . . . alleles " T A"; frequencies " 0.414634146341463 0.585365853658537"; depth 41 ; unknown ; N/A GL192443.1 samtools variation 2619472 2619472 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192443.1 samtools variation 2619495 2619495 . . . alleles " T C"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; N/A GL192443.1 samtools variation 2669406 2669406 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192443.1 samtools variation 2678625 2678625 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 52 ; known ; N/A GL192443.1 samtools variation 2701265 2701265 . . . alleles " A G"; frequencies " 0.774193548387097 0.225806451612903"; depth 62 ; unknown ; N/A GL192443.1 samtools variation 2706249 2706249 . . . alleles " A G"; frequencies " 0.251461988304094 0.748538011695906"; depth 171 ; known ; synonymous GL192443.1 samtools variation 2715814 2715814 . . . alleles " T G"; frequencies " 0.793103448275862 0.206896551724138"; depth 116 ; known ; N/A GL192443.1 samtools variation 2716323 2716323 . . . alleles " C T"; frequencies " 0.217741935483871 0.782258064516129"; depth 124 ; known ; N/A GL192443.1 samtools variation 2716672 2716672 . . . alleles " T C"; frequencies " 0.73015873015873 0.26984126984127"; depth 63 ; known ; N/A GL192443.1 samtools variation 2716967 2716967 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192443.1 samtools variation 2720975 2720975 . . . alleles " A C"; frequencies " 0.241379310344828 0.758620689655172"; depth 29 ; known ; N/A GL192444.1 samtools variation 638362 638362 . . . alleles " C G"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192444.1 samtools variation 642195 642195 . . . alleles " T A"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192444.1 samtools variation 660842 660842 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192444.1 samtools variation 660880 660880 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL192444.1 samtools variation 661430 661430 . . . alleles " G A"; frequencies " 0.472803347280335 0.527196652719665"; depth 239 ; unknown ; synonymous GL192444.1 samtools variation 664889 664889 . . . alleles " A G"; frequencies " 0.754966887417219 0.245033112582781"; depth 151 ; unknown ; non-synonymous GL192444.1 samtools variation 669539 669539 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192444.1 samtools variation 692883 692883 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 50 ; unknown ; N/A GL192444.1 samtools variation 692983 692983 . . . alleles " T A"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL192444.1 samtools variation 693971 693971 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192444.1 samtools variation 695852 695852 . . . alleles " T C"; frequencies " 0.763779527559055 0.236220472440945"; depth 127 ; unknown ; N/A GL192444.1 samtools variation 699502 699502 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192444.1 samtools variation 699701 699701 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192444.1 samtools variation 705636 705636 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192444.1 samtools variation 764659 764659 . . . alleles " A G"; frequencies " 0.644067796610169 0.355932203389831"; depth 59 ; unknown ; N/A GL192444.1 samtools variation 765227 765227 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192444.1 samtools variation 766381 766381 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192444.1 samtools variation 772503 772503 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192444.1 samtools variation 800365 800365 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192444.1 samtools variation 802214 802214 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; N/A GL192444.1 samtools variation 811759 811759 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192444.1 samtools variation 816557 816557 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192444.1 samtools variation 816891 816891 . . . alleles " G T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192444.1 samtools variation 828885 828885 . . . alleles " A G"; frequencies " 0.575757575757576 0.424242424242424"; depth 66 ; unknown ; N/A GL192444.1 samtools variation 829074 829074 . . . alleles " G C"; frequencies " 0.295081967213115 0.704918032786885"; depth 61 ; unknown ; N/A GL192444.1 samtools variation 829183 829183 . . . alleles " G A"; frequencies " 0.56043956043956 0.43956043956044"; depth 91 ; unknown ; N/A GL192444.1 samtools variation 829432 829432 . . . alleles " A G"; frequencies " 0.547826086956522 0.452173913043478"; depth 115 ; unknown ; N/A GL192444.1 samtools variation 829692 829692 . . . alleles " A C"; frequencies " 0.392857142857143 0.607142857142857"; depth 84 ; unknown ; N/A GL192444.1 samtools variation 830154 830154 . . . alleles " G A"; frequencies " 0.506666666666667 0.493333333333333"; depth 300 ; unknown ; N/A GL192444.1 samtools variation 846153 846153 . . . alleles " T C"; frequencies " 0.791044776119403 0.208955223880597"; depth 67 ; unknown ; N/A GL192444.1 samtools variation 847511 847511 . . . alleles " G C"; frequencies " 0.776223776223776 0.223776223776224"; depth 143 ; unknown ; N/A GL192444.1 samtools variation 853377 853377 . . . alleles " G T"; frequencies " 0.786885245901639 0.213114754098361"; depth 61 ; unknown ; N/A GL192444.1 samtools variation 855326 855326 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192444.1 samtools variation 855493 855493 . . . alleles " G A"; frequencies " 0.548780487804878 0.451219512195122"; depth 164 ; unknown ; N/A GL192444.1 samtools variation 856805 856805 . . . alleles " T C"; frequencies " 0.509090909090909 0.490909090909091"; depth 55 ; unknown ; N/A GL192444.1 samtools variation 856870 856870 . . . alleles " C G"; frequencies " 0.354838709677419 0.645161290322581"; depth 62 ; unknown ; N/A GL192444.1 samtools variation 856928 856928 . . . alleles " A G"; frequencies " 0.378048780487805 0.621951219512195"; depth 82 ; unknown ; N/A GL192444.1 samtools variation 857002 857002 . . . alleles " G T"; frequencies " 0.693877551020408 0.306122448979592"; depth 49 ; unknown ; N/A GL192444.1 samtools variation 857907 857907 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192444.1 samtools variation 857970 857970 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192444.1 samtools variation 858329 858329 . . . alleles " T C"; frequencies " 0.72 0.28"; depth 50 ; unknown ; N/A GL192444.1 samtools variation 858425 858425 . . . alleles " A G"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; unknown ; N/A GL192444.1 samtools variation 858657 858657 . . . alleles " T C"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192444.1 samtools variation 858745 858745 . . . alleles " G A"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL192444.1 samtools variation 858979 858979 . . . alleles " G C"; frequencies " 0.764705882352941 0.235294117647059"; depth 68 ; unknown ; N/A GL192444.1 samtools variation 859433 859433 . . . alleles " C G"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL192444.1 samtools variation 859776 859776 . . . alleles " A G"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; unknown ; N/A GL192444.1 samtools variation 860204 860204 . . . alleles " G C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192444.1 samtools variation 860304 860304 . . . alleles " C T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192444.1 samtools variation 860357 860357 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192444.1 samtools variation 861298 861298 . . . alleles " T C"; frequencies " 0.732142857142857 0.267857142857143"; depth 56 ; unknown ; N/A GL192444.1 samtools variation 862587 862587 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 32 ; unknown ; N/A GL192444.1 samtools variation 863240 863240 . . . alleles " G A"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192444.1 samtools variation 866016 866016 . . . alleles " G C"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL192444.1 samtools variation 868271 868271 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192444.1 samtools variation 869064 869064 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192444.1 samtools variation 869434 869434 . . . alleles " G C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192444.1 samtools variation 870344 870344 . . . alleles " G A"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; unknown ; N/A GL192444.1 samtools variation 870945 870945 . . . alleles " G A"; frequencies " 0.472222222222222 0.527777777777778"; depth 36 ; unknown ; N/A GL192444.1 samtools variation 871320 871320 . . . alleles " G A"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192444.1 samtools variation 872752 872752 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 46 ; unknown ; N/A GL192444.1 samtools variation 873353 873353 . . . alleles " A G"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192444.1 samtools variation 873411 873411 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192444.1 samtools variation 873502 873502 . . . alleles " C T"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192444.1 samtools variation 877327 877327 . . . alleles " A G"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL192444.1 samtools variation 878998 878998 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192444.1 samtools variation 894480 894480 . . . alleles " A G"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL192444.1 samtools variation 894677 894677 . . . alleles " G A"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192444.1 samtools variation 895006 895006 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192444.1 samtools variation 905561 905561 . . . alleles " G A"; frequencies " 0.675 0.325"; depth 40 ; unknown ; N/A GL192444.1 samtools variation 905908 905908 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192444.1 samtools variation 906968 906968 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192444.1 samtools variation 910954 910954 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192444.1 samtools variation 911130 911130 . . . alleles " C T"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL192444.1 samtools variation 911183 911183 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192444.1 samtools variation 911237 911237 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192444.1 samtools variation 911994 911994 . . . alleles " C T"; frequencies " 0.569230769230769 0.430769230769231"; depth 65 ; unknown ; N/A GL192444.1 samtools variation 912232 912232 . . . alleles " T A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192444.1 samtools variation 912238 912238 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192444.1 samtools variation 912705 912705 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192444.1 samtools variation 913808 913808 . . . alleles " C T"; frequencies " 0.764044943820225 0.235955056179775"; depth 89 ; unknown ; N/A GL192444.1 samtools variation 913880 913880 . . . alleles " T C"; frequencies " 0.676923076923077 0.323076923076923"; depth 65 ; unknown ; N/A GL192444.1 samtools variation 914166 914166 . . . alleles " C T"; frequencies " 0.712121212121212 0.287878787878788"; depth 66 ; unknown ; N/A GL192444.1 samtools variation 914557 914557 . . . alleles " C T"; frequencies " 0.641025641025641 0.358974358974359"; depth 78 ; unknown ; N/A GL192444.1 samtools variation 915046 915046 . . . alleles " A G"; frequencies " 0.51063829787234 0.48936170212766"; depth 47 ; unknown ; N/A GL192444.1 samtools variation 915705 915705 . . . alleles " C T"; frequencies " 0.723958333333333 0.276041666666667"; depth 192 ; unknown ; N/A GL192444.1 samtools variation 915803 915803 . . . alleles " T A"; frequencies " 0.61744966442953 0.38255033557047"; depth 149 ; unknown ; N/A GL192444.1 samtools variation 916080 916080 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 85 ; unknown ; N/A GL192444.1 samtools variation 916179 916179 . . . alleles " G A"; frequencies " 0.75974025974026 0.24025974025974"; depth 154 ; unknown ; N/A GL192444.1 samtools variation 916264 916264 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 126 ; unknown ; N/A GL192444.1 samtools variation 916265 916265 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 126 ; unknown ; N/A GL192444.1 samtools variation 917594 917594 . . . alleles " C T"; frequencies " 0.563380281690141 0.436619718309859"; depth 71 ; unknown ; N/A GL192444.1 samtools variation 917717 917717 . . . alleles " G C"; frequencies " 0.679558011049724 0.320441988950276"; depth 181 ; unknown ; N/A GL192444.1 samtools variation 917919 917919 . . . alleles " A G"; frequencies " 0.62621359223301 0.37378640776699"; depth 206 ; unknown ; N/A GL192444.1 samtools variation 920271 920271 . . . alleles " T G"; frequencies " 0.648936170212766 0.351063829787234"; depth 188 ; unknown ; N/A GL192444.1 samtools variation 920736 920736 . . . alleles " G T"; frequencies " 0.610062893081761 0.389937106918239"; depth 159 ; unknown ; N/A GL192444.1 samtools variation 921328 921328 . . . alleles " C T"; frequencies " 0.694736842105263 0.305263157894737"; depth 95 ; unknown ; N/A GL192444.1 samtools variation 921541 921541 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192444.1 samtools variation 921735 921735 . . . alleles " A G"; frequencies " 0.758620689655172 0.241379310344828"; depth 87 ; unknown ; N/A GL192444.1 samtools variation 922070 922070 . . . alleles " T C"; frequencies " 0.347297297297297 0.652702702702703"; depth 740 ; unknown ; synonymous GL192444.1 samtools variation 922212 922212 . . . alleles " T C"; frequencies " 0.686274509803922 0.313725490196078"; depth 102 ; unknown ; N/A GL192444.1 samtools variation 922685 922685 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; unknown ; N/A GL192444.1 samtools variation 922757 922757 . . . alleles " A G"; frequencies " 0.776315789473684 0.223684210526316"; depth 76 ; unknown ; N/A GL192444.1 samtools variation 922766 922766 . . . alleles " G A"; frequencies " 0.710144927536232 0.289855072463768"; depth 69 ; unknown ; N/A GL192444.1 samtools variation 924269 924269 . . . alleles " C T"; frequencies " 0.507692307692308 0.492307692307692"; depth 65 ; unknown ; N/A GL192444.1 samtools variation 924919 924919 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192444.1 samtools variation 925004 925004 . . . alleles " A T"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL192444.1 samtools variation 926049 926049 . . . alleles " C T"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; unknown ; N/A GL192444.1 samtools variation 926115 926115 . . . alleles " A G"; frequencies " 0.491228070175439 0.508771929824561"; depth 57 ; unknown ; N/A GL192444.1 samtools variation 927211 927211 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192444.1 samtools variation 927265 927265 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192444.1 samtools variation 927366 927366 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192444.1 samtools variation 928365 928365 . . . alleles " C T"; frequencies " 0.610864745011086 0.389135254988914"; depth 902 ; unknown ; synonymous GL192444.1 samtools variation 929965 929965 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 410 ; unknown ; N/A GL192444.1 samtools variation 932083 932083 . . . alleles " C G"; frequencies " 0.439490445859873 0.560509554140127"; depth 157 ; unknown ; N/A GL192444.1 samtools variation 932201 932201 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL192444.1 samtools variation 933759 933759 . . . alleles " C A"; frequencies " 0.772727272727273 0.227272727272727"; depth 110 ; unknown ; N/A GL192444.1 samtools variation 934515 934515 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192444.1 samtools variation 935094 935094 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192444.1 samtools variation 952998 952998 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 209 ; unknown ; N/A GL192444.1 samtools variation 955615 955615 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; unknown ; N/A GL192444.1 samtools variation 957136 957136 . . . alleles " C T"; frequencies " 0.664804469273743 0.335195530726257"; depth 179 ; unknown ; N/A GL192444.1 samtools variation 957323 957323 . . . alleles " G A"; frequencies " 0.41025641025641 0.576923076923077"; depth 78 ; unknown ; N/A GL192444.1 samtools variation 959320 959320 . . . alleles " A C"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; N/A GL192444.1 samtools variation 959385 959385 . . . alleles " G C"; frequencies " 0.507462686567164 0.492537313432836"; depth 67 ; unknown ; N/A GL192444.1 samtools variation 959909 959909 . . . alleles " A G"; frequencies " 0.703125 0.296875"; depth 64 ; unknown ; N/A GL192444.1 samtools variation 960112 960112 . . . alleles " C T"; frequencies " 0.71830985915493 0.28169014084507"; depth 71 ; unknown ; N/A GL192444.1 samtools variation 962412 962412 . . . alleles " G C"; frequencies " 0.660301507537688 0.339698492462312"; depth 995 ; unknown ; N/A GL192444.1 samtools variation 963146 963146 . . . alleles " A G"; frequencies " 0.584033613445378 0.415966386554622"; depth 476 ; unknown ; N/A GL192444.1 samtools variation 963372 963372 . . . alleles " G A"; frequencies " 0.496984318455971 0.503015681544029"; depth 829 ; unknown ; N/A GL192444.1 samtools variation 963545 963545 . . . alleles " T C"; frequencies " 0.701986754966887 0.298013245033113"; depth 151 ; unknown ; N/A GL192444.1 samtools variation 966975 966975 . . . alleles " A G"; frequencies " 0.689655172413793 0.310344827586207"; depth 58 ; unknown ; N/A GL192444.1 samtools variation 968544 968544 . . . alleles " A G"; frequencies " 0.755102040816326 0.244897959183673"; depth 49 ; unknown ; N/A GL192444.1 samtools variation 969202 969202 . . . alleles " C A"; frequencies " 0.62 0.38"; depth 50 ; unknown ; N/A GL192444.1 samtools variation 969247 969247 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 65 ; unknown ; N/A GL192444.1 samtools variation 979431 979431 . . . alleles " A T"; frequencies " 0.491228070175439 0.508771929824561"; depth 57 ; unknown ; N/A GL192444.1 samtools variation 982074 982074 . . . alleles " A G"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; synonymous GL192444.1 samtools variation 1017642 1017642 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192444.1 samtools variation 1033877 1033877 . . . alleles " A C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192444.1 samtools variation 1047458 1047458 . . . alleles " G T"; frequencies " 0.523421588594705 0.476578411405295"; depth 491 ; unknown ; N/A GL192444.1 samtools variation 1047587 1047587 . . . alleles " C A"; frequencies " 0.611344537815126 0.388655462184874"; depth 476 ; unknown ; N/A GL192444.1 samtools variation 1047766 1047766 . . . alleles " C T"; frequencies " 0.535344015080113 0.464655984919887"; depth 1061 ; unknown ; N/A GL192444.1 samtools variation 1048416 1048416 . . . alleles " G A"; frequencies " 0.572649572649573 0.427350427350427"; depth 468 ; unknown ; N/A GL192444.1 samtools variation 1048691 1048691 . . . alleles " G T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192444.1 samtools variation 1052138 1052138 . . . alleles " A C"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; unknown ; N/A GL192444.1 samtools variation 1054836 1054836 . . . alleles " G A"; frequencies " 0.580645161290323 0.419354838709677"; depth 62 ; unknown ; N/A GL192444.1 samtools variation 1054840 1054840 . . . alleles " C T"; frequencies " 0.559322033898305 0.440677966101695"; depth 59 ; unknown ; N/A GL192444.1 samtools variation 1054958 1054958 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192444.1 samtools variation 1059667 1059667 . . . alleles " T C"; frequencies " 0.52129221732746 0.47870778267254"; depth 681 ; unknown ; N/A GL192444.1 samtools variation 1059831 1059831 . . . alleles " T G"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; N/A GL192444.1 samtools variation 1063298 1063298 . . . alleles " C T"; frequencies " 0.488142292490119 0.511857707509881"; depth 506 ; unknown ; non-synonymous GL192444.1 samtools variation 1064959 1064959 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192444.1 samtools variation 1066831 1066831 . . . alleles " C G"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192444.1 samtools variation 1066864 1066864 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 34 ; unknown ; N/A GL192444.1 samtools variation 1066990 1066990 . . . alleles " G C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192444.1 samtools variation 1067179 1067179 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192444.1 samtools variation 1067891 1067891 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192444.1 samtools variation 1068070 1068070 . . . alleles " T C"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; unknown ; N/A GL192444.1 samtools variation 1068175 1068175 . . . alleles " A T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192444.1 samtools variation 1072140 1072140 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192444.1 samtools variation 1074211 1074211 . . . alleles " A G"; frequencies " 0.541284403669725 0.44954128440367"; depth 109 ; unknown ; N/A GL192444.1 samtools variation 1203619 1203619 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 51 ; unknown ; N/A GL192444.1 samtools variation 1203654 1203654 . . . alleles " G C"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; unknown ; N/A GL192444.1 samtools variation 1203666 1203666 . . . alleles " C T"; frequencies " 0.257142857142857 0.742857142857143"; depth 35 ; unknown ; N/A GL192444.1 samtools variation 1203758 1203758 . . . alleles " G T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192444.1 samtools variation 1203769 1203769 . . . alleles " G T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192444.1 samtools variation 1204260 1204260 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 45 ; unknown ; N/A GL192444.1 samtools variation 1204505 1204505 . . . alleles " C T"; frequencies " 0.482758620689655 0.517241379310345"; depth 58 ; unknown ; N/A GL192444.1 samtools variation 1204521 1204521 . . . alleles " T C"; frequencies " 0.274193548387097 0.725806451612903"; depth 62 ; unknown ; N/A GL192444.1 samtools variation 1205137 1205137 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192444.1 samtools variation 1205247 1205247 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 26 ; unknown ; N/A GL192444.1 samtools variation 1205248 1205248 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 25 ; unknown ; N/A GL192444.1 samtools variation 1289046 1289046 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192444.1 samtools variation 1290598 1290598 . . . alleles " T A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192444.1 samtools variation 1307435 1307435 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192444.1 samtools variation 1374876 1374876 . . . alleles " T C"; frequencies " 0.749077490774908 0.250922509225092"; depth 271 ; unknown ; N/A GL192444.1 samtools variation 1416248 1416248 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; non-synonymous GL192444.1 samtools variation 1425826 1425826 . . . alleles " A G"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; unknown ; N/A GL192444.1 samtools variation 1548879 1548879 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; non-synonymous GL192444.1 samtools variation 1549416 1549416 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; non-synonymous GL192444.1 samtools variation 1549459 1549459 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; synonymous GL192444.1 samtools variation 1549517 1549517 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; non-synonymous GL192444.1 samtools variation 1649321 1649321 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192444.1 samtools variation 1657164 1657164 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192444.1 samtools variation 1657203 1657203 . . . alleles " G A"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL192444.1 samtools variation 1658920 1658920 . . . alleles " T C"; frequencies " 0.785123966942149 0.214876033057851"; depth 121 ; unknown ; N/A GL192444.1 samtools variation 1676060 1676060 . . . alleles " G A"; frequencies " 0.577777777777778 0.422222222222222"; depth 45 ; unknown ; N/A GL192444.1 samtools variation 1856157 1856157 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192444.1 samtools variation 1956125 1956125 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 52 ; known ; N/A GL192444.1 samtools variation 1956227 1956227 . . . alleles " C T"; frequencies " 0.276595744680851 0.723404255319149"; depth 47 ; known ; N/A GL192444.1 samtools variation 1957274 1957274 . . . alleles " A G"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; known ; N/A GL192444.1 samtools variation 1973572 1973572 . . . alleles " T C"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL192444.1 samtools variation 1973663 1973663 . . . alleles " A G"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL192444.1 samtools variation 1974277 1974277 . . . alleles " G C"; frequencies " 0.274900398406374 0.725099601593626"; depth 251 ; known ; synonymous GL192444.1 samtools variation 1979241 1979241 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192444.1 samtools variation 2044523 2044523 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192444.1 samtools variation 2053024 2053024 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192444.1 samtools variation 2149131 2149131 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192444.1 samtools variation 2150396 2150396 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192444.1 samtools variation 2150818 2150818 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL192444.1 samtools variation 2150968 2150968 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192444.1 samtools variation 2533074 2533074 . . . alleles " T C"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL192444.1 samtools variation 2534254 2534254 . . . alleles " T C"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192444.1 samtools variation 2537245 2537245 . . . alleles " G A"; frequencies " 0.783333333333333 0.216666666666667"; depth 120 ; unknown ; N/A GL192444.1 samtools variation 2538661 2538661 . . . alleles " G A"; frequencies " 0.46875 0.46875"; depth 32 ; unknown ; N/A GL192444.1 samtools variation 2545206 2545206 . . . alleles " A G"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192444.1 samtools variation 2546234 2546234 . . . alleles " G A"; frequencies " 0.752542372881356 0.247457627118644"; depth 295 ; unknown ; synonymous GL192444.1 samtools variation 2546449 2546449 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; N/A GL192444.1 samtools variation 2547272 2547272 . . . alleles " T C"; frequencies " 0.232558139534884 0.767441860465116"; depth 43 ; known ; N/A GL192444.1 samtools variation 2547425 2547425 . . . alleles " G A"; frequencies " 0.423076923076923 0.576923076923077"; depth 52 ; unknown ; N/A GL192444.1 samtools variation 2547697 2547697 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192444.1 samtools variation 2547958 2547958 . . . alleles " G C"; frequencies " 0.777777777777778 0.222222222222222"; depth 63 ; unknown ; N/A GL192444.1 samtools variation 2549754 2549754 . . . alleles " C A"; frequencies " 0.254901960784314 0.745098039215686"; depth 51 ; known ; N/A GL192444.1 samtools variation 2550393 2550393 . . . alleles " A G"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; unknown ; N/A GL192444.1 samtools variation 2550528 2550528 . . . alleles " C T"; frequencies " 0.658536585365854 0.341463414634146"; depth 41 ; unknown ; N/A GL192444.1 samtools variation 2550829 2550829 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192444.1 samtools variation 2551149 2551149 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192444.1 samtools variation 2551209 2551209 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL192444.1 samtools variation 2551506 2551506 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192444.1 samtools variation 2551687 2551687 . . . alleles " G C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192444.1 samtools variation 2552607 2552607 . . . alleles " G A"; frequencies " 0.578313253012048 0.421686746987952"; depth 166 ; unknown ; N/A GL192444.1 samtools variation 2554129 2554129 . . . alleles " T C"; frequencies " 0.216931216931217 0.783068783068783"; depth 189 ; known ; N/A GL192444.1 samtools variation 2555325 2555325 . . . alleles " T C"; frequencies " 0.301369863013699 0.698630136986301"; depth 73 ; known ; N/A GL192444.1 samtools variation 2556517 2556517 . . . alleles " G C"; frequencies " 0.743243243243243 0.256756756756757"; depth 74 ; unknown ; N/A GL192444.1 samtools variation 2557110 2557110 . . . alleles " C T"; frequencies " 0.688073394495413 0.311926605504587"; depth 109 ; unknown ; N/A GL192444.1 samtools variation 2558044 2558044 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 81 ; unknown ; N/A GL192444.1 samtools variation 2560887 2560887 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192444.1 samtools variation 2562681 2562681 . . . alleles " C T"; frequencies " 0.254901960784314 0.745098039215686"; depth 51 ; known ; N/A GL192444.1 samtools variation 2563087 2563087 . . . alleles " G A"; frequencies " 0.597826086956522 0.402173913043478"; depth 92 ; unknown ; N/A GL192444.1 samtools variation 2564430 2564430 . . . alleles " C T"; frequencies " 0.773913043478261 0.226086956521739"; depth 115 ; unknown ; N/A GL192444.1 samtools variation 2568113 2568113 . . . alleles " C T"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192444.1 samtools variation 2571248 2571248 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192444.1 samtools variation 2577390 2577390 . . . alleles " C A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL192444.1 samtools variation 2594072 2594072 . . . alleles " G T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192445.1 samtools variation 1289419 1289419 . . . alleles " A G"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192445.1 samtools variation 1680398 1680398 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 45 ; unknown ; non-synonymous GL192445.1 samtools variation 2182064 2182064 . . . alleles " C T"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; known ; N/A GL192445.1 samtools variation 2218768 2218768 . . . alleles " C T"; frequencies " 0.673469387755102 0.326530612244898"; depth 49 ; unknown ; N/A GL192445.1 samtools variation 2227547 2227547 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192445.1 samtools variation 2435233 2435233 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192445.1 samtools variation 2442539 2442539 . . . alleles " A T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192445.1 samtools variation 2466023 2466023 . . . alleles " A G"; frequencies " 0.674698795180723 0.325301204819277"; depth 166 ; unknown ; synonymous GL192445.1 samtools variation 2468203 2468203 . . . alleles " C T"; frequencies " 0.25531914893617 0.74468085106383"; depth 47 ; unknown ; N/A GL192445.1 samtools variation 2489291 2489291 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192445.1 samtools variation 2504635 2504635 . . . alleles " A G"; frequencies " 0.696629213483146 0.303370786516854"; depth 89 ; unknown ; synonymous GL192445.1 samtools variation 2506656 2506656 . . . alleles " C T"; frequencies " 0.779527559055118 0.220472440944882"; depth 254 ; unknown ; N/A GL192445.1 samtools variation 2507067 2507067 . . . alleles " G A"; frequencies " 0.788135593220339 0.211864406779661"; depth 236 ; unknown ; N/A GL192445.1 samtools variation 2507068 2507068 . . . alleles " A T"; frequencies " 0.788135593220339 0.211864406779661"; depth 236 ; unknown ; N/A GL192445.1 samtools variation 2560656 2560656 . . . alleles " C A"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL192445.1 samtools variation 2567533 2567533 . . . alleles " G A"; frequencies " 0.76056338028169 0.23943661971831"; depth 71 ; unknown ; N/A GL192445.1 samtools variation 2572756 2572756 . . . alleles " G A"; frequencies " 0.718181818181818 0.281818181818182"; depth 110 ; unknown ; N/A GL192445.1 samtools variation 2628215 2628215 . . . alleles " A C"; frequencies " 0.702702702702703 0.288288288288288"; depth 111 ; unknown ; N/A GL192446.1 samtools variation 630983 630983 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192446.1 samtools variation 656053 656053 . . . alleles " A G"; frequencies " 0.378787878787879 0.621212121212121"; depth 66 ; known ; synonymous GL192446.1 samtools variation 688294 688294 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192446.1 samtools variation 688639 688639 . . . alleles " T G"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; known ; N/A GL192446.1 samtools variation 689019 689019 . . . alleles " A C"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; known ; N/A GL192446.1 samtools variation 689762 689762 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 24 ; known ; N/A GL192446.1 samtools variation 689826 689826 . . . alleles " A G"; frequencies " 0.469387755102041 0.530612244897959"; depth 49 ; known ; N/A GL192446.1 samtools variation 714426 714426 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; synonymous GL192446.1 samtools variation 715031 715031 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; non-synonymous GL192446.1 samtools variation 715356 715356 . . . alleles " T C"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; synonymous GL192446.1 samtools variation 716595 716595 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; non-synonymous GL192446.1 samtools variation 716879 716879 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192446.1 samtools variation 2038334 2038334 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192447.1 samtools variation 924640 924640 . . . alleles " G C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; non-synonymous GL192447.1 samtools variation 1111326 1111326 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192447.1 samtools variation 1111734 1111734 . . . alleles " C T"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192447.1 samtools variation 1116478 1116478 . . . alleles " C T"; frequencies " 0.521963824289406 0.478036175710594"; depth 387 ; unknown ; synonymous GL192447.1 samtools variation 1121421 1121421 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192447.1 samtools variation 1131379 1131379 . . . alleles " A C"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; known ; N/A GL192447.1 samtools variation 1137119 1137119 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192447.1 samtools variation 1170195 1170195 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192447.1 samtools variation 1299563 1299563 . . . alleles " A G"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; synonymous GL192447.1 samtools variation 1414130 1414130 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; synonymous GL192447.1 samtools variation 1500177 1500177 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192447.1 samtools variation 1510783 1510783 . . . alleles " C T"; frequencies " 0.387755102040816 0.612244897959184"; depth 49 ; known ; N/A GL192447.1 samtools variation 1544606 1544606 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192447.1 samtools variation 1545635 1545635 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192447.1 samtools variation 1546060 1546060 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL192447.1 samtools variation 1549280 1549280 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192447.1 samtools variation 1552558 1552558 . . . alleles " A G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL192447.1 samtools variation 1598513 1598513 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192447.1 samtools variation 1600383 1600383 . . . alleles " A G"; frequencies " 0.658536585365854 0.341463414634146"; depth 82 ; known ; N/A GL192447.1 samtools variation 1600781 1600781 . . . alleles " A C"; frequencies " 0.509433962264151 0.490566037735849"; depth 106 ; known ; N/A GL192447.1 samtools variation 1707171 1707171 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 12 ; known ; non-synonymous GL192447.1 samtools variation 2142103 2142103 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; known ; synonymous GL192447.1 samtools variation 2177200 2177200 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 56 ; known ; N/A GL192447.1 samtools variation 2178037 2178037 . . . alleles " G A"; frequencies " 0.742424242424242 0.257575757575758"; depth 66 ; unknown ; N/A GL192447.1 samtools variation 2185226 2185226 . . . alleles " T C"; frequencies " 0.778761061946903 0.212389380530973"; depth 113 ; unknown ; N/A GL192447.1 samtools variation 2235601 2235601 . . . alleles " G A"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; non-synonymous GL192447.1 samtools variation 2236532 2236532 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 42 ; known ; synonymous GL192447.1 samtools variation 2243202 2243202 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192447.1 samtools variation 2246256 2246256 . . . alleles " T C"; frequencies " 0.46 0.54"; depth 50 ; known ; synonymous GL192447.1 samtools variation 2253791 2253791 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192447.1 samtools variation 2254057 2254057 . . . alleles " G A"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192447.1 samtools variation 2255218 2255218 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192448.1 samtools variation 419383 419383 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192448.1 samtools variation 422732 422732 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; non-synonymous GL192448.1 samtools variation 423881 423881 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; non-synonymous GL192448.1 samtools variation 425346 425346 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192448.1 samtools variation 425569 425569 . . . alleles " A C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192448.1 samtools variation 425619 425619 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192448.1 samtools variation 426042 426042 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192448.1 samtools variation 426975 426975 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192448.1 samtools variation 429275 429275 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192448.1 samtools variation 429361 429361 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192448.1 samtools variation 430101 430101 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192448.1 samtools variation 431620 431620 . . . alleles " A G"; frequencies " 0.517374517374517 0.482625482625483"; depth 259 ; unknown ; N/A GL192448.1 samtools variation 431667 431667 . . . alleles " A T"; frequencies " 0.588832487309645 0.411167512690355"; depth 197 ; unknown ; N/A GL192448.1 samtools variation 431705 431705 . . . alleles " G A"; frequencies " 0.494285714285714 0.505714285714286"; depth 350 ; unknown ; N/A GL192448.1 samtools variation 432553 432553 . . . alleles " C T"; frequencies " 0.568965517241379 0.431034482758621"; depth 58 ; unknown ; N/A GL192448.1 samtools variation 432749 432749 . . . alleles " T C"; frequencies " 0.620629370629371 0.379370629370629"; depth 572 ; unknown ; N/A GL192448.1 samtools variation 432754 432754 . . . alleles " A G"; frequencies " 0.631386861313869 0.368613138686131"; depth 548 ; unknown ; N/A GL192448.1 samtools variation 433213 433213 . . . alleles " C T"; frequencies " 0.598615916955017 0.401384083044983"; depth 289 ; unknown ; N/A GL192448.1 samtools variation 433378 433378 . . . alleles " A G"; frequencies " 0.41875 0.58125"; depth 160 ; unknown ; N/A GL192448.1 samtools variation 433899 433899 . . . alleles " T A"; frequencies " 0.753676470588235 0.246323529411765"; depth 272 ; unknown ; N/A GL192448.1 samtools variation 433907 433907 . . . alleles " C T"; frequencies " 0.610909090909091 0.389090909090909"; depth 275 ; unknown ; N/A GL192448.1 samtools variation 433941 433941 . . . alleles " C A"; frequencies " 0.597156398104265 0.402843601895735"; depth 211 ; unknown ; N/A GL192448.1 samtools variation 434423 434423 . . . alleles " T C"; frequencies " 0.524271844660194 0.475728155339806"; depth 103 ; unknown ; N/A GL192448.1 samtools variation 435921 435921 . . . alleles " G A"; frequencies " 0.732142857142857 0.267857142857143"; depth 56 ; unknown ; N/A GL192448.1 samtools variation 436068 436068 . . . alleles " G A"; frequencies " 0.716049382716049 0.283950617283951"; depth 81 ; unknown ; N/A GL192448.1 samtools variation 436084 436084 . . . alleles " C A"; frequencies " 0.722222222222222 0.277777777777778"; depth 72 ; unknown ; N/A GL192448.1 samtools variation 436297 436297 . . . alleles " A C"; frequencies " 0.657894736842105 0.342105263157895"; depth 76 ; unknown ; N/A GL192448.1 samtools variation 452067 452067 . . . alleles " T C"; frequencies " 0.646464646464647 0.353535353535354"; depth 297 ; unknown ; non-synonymous GL192448.1 samtools variation 1296400 1296400 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 56 ; known ; N/A GL192448.1 samtools variation 1296502 1296502 . . . alleles " A T"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; known ; N/A GL192448.1 samtools variation 1315761 1315761 . . . alleles " A C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192448.1 samtools variation 1319119 1319119 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192448.1 samtools variation 1364963 1364963 . . . alleles " T C"; frequencies " 0.653153153153153 0.346846846846847"; depth 222 ; unknown ; synonymous GL192448.1 samtools variation 1365414 1365414 . . . alleles " G A"; frequencies " 0.785123966942149 0.214876033057851"; depth 121 ; unknown ; N/A GL192448.1 samtools variation 1365485 1365485 . . . alleles " C T"; frequencies " 0.726775956284153 0.273224043715847"; depth 183 ; unknown ; N/A GL192448.1 samtools variation 1365592 1365592 . . . alleles " G T"; frequencies " 0.707547169811321 0.292452830188679"; depth 212 ; unknown ; N/A GL192448.1 samtools variation 1365674 1365674 . . . alleles " C T"; frequencies " 0.763888888888889 0.236111111111111"; depth 144 ; unknown ; N/A GL192448.1 samtools variation 1366545 1366545 . . . alleles " A C"; frequencies " 0.679347826086957 0.320652173913043"; depth 184 ; unknown ; N/A GL192448.1 samtools variation 1366605 1366605 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 63 ; unknown ; N/A GL192448.1 samtools variation 1366996 1366996 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; unknown ; N/A GL192448.1 samtools variation 1367347 1367347 . . . alleles " A C"; frequencies " 0.54 0.46"; depth 50 ; unknown ; N/A GL192448.1 samtools variation 1368520 1368520 . . . alleles " C T"; frequencies " 0.65979381443299 0.34020618556701"; depth 97 ; unknown ; N/A GL192448.1 samtools variation 2124993 2124993 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL192448.1 samtools variation 2178674 2178674 . . . alleles " A G"; frequencies " 0.335443037974684 0.664556962025316"; depth 158 ; unknown ; synonymous GL192448.1 samtools variation 2394254 2394254 . . . alleles " A G"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; unknown ; non-synonymous GL192448.1 samtools variation 2459537 2459537 . . . alleles " C T"; frequencies " 0.37037037037037 0.62962962962963"; depth 81 ; unknown ; synonymous GL192448.1 samtools variation 2530446 2530446 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 58 ; unknown ; synonymous GL192448.1 samtools variation 2532731 2532731 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; synonymous GL192448.1 samtools variation 2637093 2637093 . . . alleles " C T"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; unknown ; synonymous GL192448.1 samtools variation 2644632 2644632 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192448.1 samtools variation 2644648 2644648 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL192448.1 samtools variation 2644737 2644737 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192449.1 samtools variation 282043 282043 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192449.1 samtools variation 394739 394739 . . . alleles " G A"; frequencies " 0.24 0.76"; depth 75 ; known ; synonymous GL192449.1 samtools variation 418739 418739 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 105 ; known ; N/A GL192449.1 samtools variation 421121 421121 . . . alleles " G C"; frequencies " 0.575757575757576 0.424242424242424"; depth 165 ; known ; synonymous GL192449.1 samtools variation 425610 425610 . . . alleles " A G"; frequencies " 0.613138686131387 0.386861313868613"; depth 274 ; known ; N/A GL192449.1 samtools variation 770562 770562 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192449.1 samtools variation 770603 770603 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192449.1 samtools variation 770804 770804 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192449.1 samtools variation 823085 823085 . . . alleles " G A"; frequencies " 0.310344827586207 0.689655172413793"; depth 58 ; unknown ; synonymous GL192449.1 samtools variation 823939 823939 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 55 ; unknown ; non-synonymous GL192449.1 samtools variation 823998 823998 . . . alleles " T A"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; non-synonymous GL192449.1 samtools variation 844227 844227 . . . alleles " A G"; frequencies " 0.345454545454545 0.654545454545455"; depth 55 ; unknown ; synonymous GL192449.1 samtools variation 844470 844470 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 105 ; unknown ; synonymous GL192449.1 samtools variation 894406 894406 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; N/A GL192449.1 samtools variation 894465 894465 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192449.1 samtools variation 896666 896666 . . . alleles " C T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192449.1 samtools variation 899658 899658 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192449.1 samtools variation 900314 900314 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192449.1 samtools variation 900529 900529 . . . alleles " C T"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL192449.1 samtools variation 904278 904278 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192449.1 samtools variation 912453 912453 . . . alleles " G A"; frequencies " 0.783333333333333 0.216666666666667"; depth 60 ; unknown ; N/A GL192449.1 samtools variation 912460 912460 . . . alleles " G A"; frequencies " 0.370967741935484 0.629032258064516"; depth 62 ; known ; N/A GL192449.1 samtools variation 912753 912753 . . . alleles " C T"; frequencies " 0.582089552238806 0.417910447761194"; depth 67 ; unknown ; N/A GL192449.1 samtools variation 913374 913374 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 95 ; unknown ; N/A GL192449.1 samtools variation 913646 913646 . . . alleles " G C"; frequencies " 0.348837209302326 0.651162790697674"; depth 43 ; known ; N/A GL192449.1 samtools variation 913749 913749 . . . alleles " A G"; frequencies " 0.630769230769231 0.369230769230769"; depth 65 ; unknown ; N/A GL192449.1 samtools variation 913828 913828 . . . alleles " A T"; frequencies " 0.510204081632653 0.489795918367347"; depth 49 ; known ; N/A GL192449.1 samtools variation 928115 928115 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192449.1 samtools variation 991019 991019 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192449.1 samtools variation 1130313 1130313 . . . alleles " C G"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; known ; N/A GL192449.1 samtools variation 1143931 1143931 . . . alleles " A T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192449.1 samtools variation 1144490 1144490 . . . alleles " C T"; frequencies " 0.309090909090909 0.690909090909091"; depth 55 ; unknown ; N/A GL192449.1 samtools variation 1147853 1147853 . . . alleles " G A"; frequencies " 0.472972972972973 0.527027027027027"; depth 74 ; known ; N/A GL192449.1 samtools variation 1147913 1147913 . . . alleles " T G"; frequencies " 0.542372881355932 0.457627118644068"; depth 59 ; known ; N/A GL192449.1 samtools variation 1147943 1147943 . . . alleles " G A"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; known ; N/A GL192449.1 samtools variation 1344541 1344541 . . . alleles " G A"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192449.1 samtools variation 1527566 1527566 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192449.1 samtools variation 1566917 1566917 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192449.1 samtools variation 1629269 1629269 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 60 ; unknown ; non-synonymous GL192449.1 samtools variation 1630025 1630025 . . . alleles " G C"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; non-synonymous GL192449.1 samtools variation 1630078 1630078 . . . alleles " T C"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; synonymous GL192449.1 samtools variation 1630467 1630467 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; non-synonymous GL192449.1 samtools variation 1631342 1631342 . . . alleles " A G"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; non-synonymous GL192449.1 samtools variation 1632563 1632563 . . . alleles " C G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; non-synonymous GL192449.1 samtools variation 1633013 1633013 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 48 ; unknown ; non-synonymous GL192449.1 samtools variation 1642819 1642819 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192449.1 samtools variation 1666114 1666114 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; synonymous GL192449.1 samtools variation 1666174 1666174 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 35 ; unknown ; synonymous GL192449.1 samtools variation 1780422 1780422 . . . alleles " A C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; synonymous GL192449.1 samtools variation 1783983 1783983 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 44 ; unknown ; N/A GL192449.1 samtools variation 1784052 1784052 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192449.1 samtools variation 1784239 1784239 . . . alleles " T G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192449.1 samtools variation 1784254 1784254 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192449.1 samtools variation 1784778 1784778 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192449.1 samtools variation 1813112 1813112 . . . alleles " C A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192449.1 samtools variation 2694546 2694546 . . . alleles " G A"; frequencies " 0.745283018867924 0.254716981132075"; depth 212 ; unknown ; N/A GL192449.1 samtools variation 2694684 2694684 . . . alleles " T G"; frequencies " 0.791164658634538 0.208835341365462"; depth 249 ; unknown ; N/A GL192449.1 samtools variation 2695115 2695115 . . . alleles " C T"; frequencies " 0.796747967479675 0.203252032520325"; depth 123 ; unknown ; N/A GL192450.1 samtools variation 202982 202982 . . . alleles " T A"; frequencies " 0.651515151515151 0.348484848484849"; depth 66 ; unknown ; N/A GL192450.1 samtools variation 203204 203204 . . . alleles " T G"; frequencies " 0.551020408163265 0.448979591836735"; depth 49 ; unknown ; N/A GL192450.1 samtools variation 205538 205538 . . . alleles " G A"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL192450.1 samtools variation 205866 205866 . . . alleles " A C"; frequencies " 0.285714285714286 0.714285714285714"; depth 63 ; known ; non-synonymous GL192450.1 samtools variation 209304 209304 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192450.1 samtools variation 1182163 1182163 . . . alleles " C A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192450.1 samtools variation 1182592 1182592 . . . alleles " A G"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; known ; N/A GL192450.1 samtools variation 1182665 1182665 . . . alleles " C G"; frequencies " 0.720588235294118 0.279411764705882"; depth 68 ; known ; N/A GL192450.1 samtools variation 1182801 1182801 . . . alleles " A G"; frequencies " 0.698412698412698 0.301587301587302"; depth 63 ; known ; N/A GL192450.1 samtools variation 1183054 1183054 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 78 ; known ; N/A GL192450.1 samtools variation 1186731 1186731 . . . alleles " T A"; frequencies " 0.27319587628866 0.72680412371134"; depth 194 ; known ; N/A GL192450.1 samtools variation 1186813 1186813 . . . alleles " G A"; frequencies " 0.725806451612903 0.274193548387097"; depth 124 ; unknown ; N/A GL192450.1 samtools variation 1186903 1186903 . . . alleles " C T"; frequencies " 0.576470588235294 0.423529411764706"; depth 85 ; known ; N/A GL192450.1 samtools variation 1187991 1187991 . . . alleles " T G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192450.1 samtools variation 1188974 1188974 . . . alleles " T C"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL192450.1 samtools variation 1189012 1189012 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192450.1 samtools variation 1189803 1189803 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192450.1 samtools variation 1191430 1191430 . . . alleles " G A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192450.1 samtools variation 1191480 1191480 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192450.1 samtools variation 1191507 1191507 . . . alleles " C T"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; known ; N/A GL192450.1 samtools variation 1191986 1191986 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192450.1 samtools variation 1192335 1192335 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192450.1 samtools variation 1193625 1193625 . . . alleles " A G"; frequencies " 0.353846153846154 0.646153846153846"; depth 65 ; known ; N/A GL192450.1 samtools variation 1194226 1194226 . . . alleles " A G"; frequencies " 0.655172413793103 0.344827586206897"; depth 58 ; unknown ; N/A GL192450.1 samtools variation 1194235 1194235 . . . alleles " C T"; frequencies " 0.639344262295082 0.360655737704918"; depth 61 ; known ; N/A GL192450.1 samtools variation 1194605 1194605 . . . alleles " G A"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; N/A GL192450.1 samtools variation 1195277 1195277 . . . alleles " A G"; frequencies " 0.681034482758621 0.318965517241379"; depth 116 ; unknown ; N/A GL192450.1 samtools variation 1195430 1195430 . . . alleles " A G"; frequencies " 0.67065868263473 0.329341317365269"; depth 167 ; known ; N/A GL192450.1 samtools variation 1195497 1195497 . . . alleles " A G"; frequencies " 0.648936170212766 0.351063829787234"; depth 188 ; known ; N/A GL192450.1 samtools variation 1195740 1195740 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; known ; N/A GL192450.1 samtools variation 1195755 1195755 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; known ; N/A GL192450.1 samtools variation 1195779 1195779 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 28 ; known ; N/A GL192450.1 samtools variation 1196034 1196034 . . . alleles " A T"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; known ; N/A GL192450.1 samtools variation 1196144 1196144 . . . alleles " A G"; frequencies " 0.540540540540541 0.459459459459459"; depth 37 ; known ; N/A GL192450.1 samtools variation 1196173 1196173 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 44 ; known ; N/A GL192450.1 samtools variation 1196235 1196235 . . . alleles " A G"; frequencies " 0.23134328358209 0.76865671641791"; depth 134 ; known ; N/A GL192450.1 samtools variation 1196791 1196791 . . . alleles " T C"; frequencies " 0.7109375 0.2890625"; depth 128 ; known ; N/A GL192450.1 samtools variation 1203098 1203098 . . . alleles " C T"; frequencies " 0.672297297297297 0.327702702702703"; depth 296 ; known ; non-synonymous GL192450.1 samtools variation 1220357 1220357 . . . alleles " G A"; frequencies " 0.272 0.728"; depth 125 ; known ; synonymous GL192450.1 samtools variation 1303375 1303375 . . . alleles " G A"; frequencies " 0.28125 0.71875"; depth 32 ; known ; N/A GL192450.1 samtools variation 1314035 1314035 . . . alleles " G C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; non-synonymous GL192450.1 samtools variation 1543743 1543743 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192450.1 samtools variation 1546288 1546288 . . . alleles " G T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192451.1 samtools variation 1593012 1593012 . . . alleles " A G"; frequencies " 0.257142857142857 0.742857142857143"; depth 35 ; unknown ; N/A GL192451.1 samtools variation 1594682 1594682 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192451.1 samtools variation 2229032 2229032 . . . alleles " A G"; frequencies " 0.540983606557377 0.459016393442623"; depth 61 ; unknown ; synonymous GL192451.1 samtools variation 2236244 2236244 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192451.1 samtools variation 2237768 2237768 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192451.1 samtools variation 2240083 2240083 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192451.1 samtools variation 2240281 2240281 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL192451.1 samtools variation 2241764 2241764 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192451.1 samtools variation 2245440 2245440 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192451.1 samtools variation 2248704 2248704 . . . alleles " G A"; frequencies " 0.783783783783784 0.216216216216216"; depth 74 ; unknown ; N/A GL192451.1 samtools variation 2249039 2249039 . . . alleles " A G"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL192451.1 samtools variation 2254573 2254573 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192451.1 samtools variation 2270005 2270005 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192451.1 samtools variation 2277145 2277145 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192451.1 samtools variation 2286970 2286970 . . . alleles " G A"; frequencies " 0.694581280788177 0.305418719211823"; depth 203 ; known ; synonymous GL192452.1 samtools variation 1840309 1840309 . . . alleles " G T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192452.1 samtools variation 1844784 1844784 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 76 ; known ; N/A GL192452.1 samtools variation 1849547 1849547 . . . alleles " C T"; frequencies " 0.668292682926829 0.331707317073171"; depth 205 ; unknown ; synonymous GL192452.1 samtools variation 1852677 1852677 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192452.1 samtools variation 1852765 1852765 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192452.1 samtools variation 1896437 1896437 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192452.1 samtools variation 1896697 1896697 . . . alleles " G A"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL192452.1 samtools variation 1896983 1896983 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192452.1 samtools variation 1910913 1910913 . . . alleles " A G"; frequencies " 0.540540540540541 0.459459459459459"; depth 37 ; unknown ; N/A GL192452.1 samtools variation 1910914 1910914 . . . alleles " A T"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; unknown ; N/A GL192452.1 samtools variation 1914908 1914908 . . . alleles " T G"; frequencies " 0.314917127071823 0.679558011049724"; depth 181 ; known ; synonymous GL192453.1 samtools variation 61473 61473 . . . alleles " G A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL192453.1 samtools variation 63237 63237 . . . alleles " C G"; frequencies " 0.707070707070707 0.292929292929293"; depth 99 ; unknown ; N/A GL192453.1 samtools variation 63914 63914 . . . alleles " G A"; frequencies " 0.793388429752066 0.206611570247934"; depth 242 ; unknown ; N/A GL192453.1 samtools variation 65474 65474 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 30 ; known ; N/A GL192453.1 samtools variation 65847 65847 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 78 ; known ; synonymous GL192453.1 samtools variation 122103 122103 . . . alleles " G A"; frequencies " 0.53393665158371 0.46606334841629"; depth 221 ; unknown ; N/A GL192453.1 samtools variation 122410 122410 . . . alleles " G A"; frequencies " 0.693121693121693 0.306878306878307"; depth 189 ; unknown ; N/A GL192453.1 samtools variation 187894 187894 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192453.1 samtools variation 188235 188235 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192453.1 samtools variation 191265 191265 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192453.1 samtools variation 194872 194872 . . . alleles " A G"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; known ; N/A GL192453.1 samtools variation 195095 195095 . . . alleles " G A"; frequencies " 0.58695652173913 0.41304347826087"; depth 46 ; known ; N/A GL192453.1 samtools variation 195364 195364 . . . alleles " A G"; frequencies " 0.415929203539823 0.584070796460177"; depth 113 ; known ; N/A GL192453.1 samtools variation 195565 195565 . . . alleles " T C"; frequencies " 0.47972972972973 0.52027027027027"; depth 296 ; known ; N/A GL192453.1 samtools variation 195888 195888 . . . alleles " T A"; frequencies " 0.466666666666667 0.533333333333333"; depth 75 ; known ; N/A GL192453.1 samtools variation 966370 966370 . . . alleles " A G"; frequencies " 0.547619047619048 0.452380952380952"; depth 126 ; unknown ; N/A GL192453.1 samtools variation 966537 966537 . . . alleles " C T"; frequencies " 0.560975609756098 0.439024390243902"; depth 287 ; unknown ; N/A GL192453.1 samtools variation 966721 966721 . . . alleles " A C"; frequencies " 0.3671875 0.6328125"; depth 128 ; unknown ; N/A GL192453.1 samtools variation 966826 966826 . . . alleles " A T"; frequencies " 0.659090909090909 0.340909090909091"; depth 88 ; unknown ; N/A GL192453.1 samtools variation 967083 967083 . . . alleles " G A"; frequencies " 0.705357142857143 0.294642857142857"; depth 112 ; unknown ; N/A GL192453.1 samtools variation 971091 971091 . . . alleles " G A"; frequencies " 0.446843853820598 0.552325581395349"; depth 1204 ; unknown ; synonymous GL192453.1 samtools variation 972593 972593 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192453.1 samtools variation 979547 979547 . . . alleles " G A"; frequencies " 0.6243961352657 0.3743961352657"; depth 828 ; unknown ; synonymous GL192453.1 samtools variation 982312 982312 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192453.1 samtools variation 982496 982496 . . . alleles " A G"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL192453.1 samtools variation 983110 983110 . . . alleles " C G"; frequencies " 0.697368421052632 0.301435406698565"; depth 836 ; unknown ; non-synonymous GL192453.1 samtools variation 1098308 1098308 . . . alleles " C A"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; known ; N/A GL192453.1 samtools variation 1098707 1098707 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 160 ; known ; N/A GL192453.1 samtools variation 1102320 1102320 . . . alleles " T A"; frequencies " 0.637254901960784 0.362745098039216"; depth 102 ; unknown ; non-synonymous GL192453.1 samtools variation 1138938 1138938 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 56 ; known ; non-synonymous GL192453.1 samtools variation 1150817 1150817 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192453.1 samtools variation 1153649 1153649 . . . alleles " G C"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192453.1 samtools variation 1153698 1153698 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192453.1 samtools variation 1163178 1163178 . . . alleles " T C"; frequencies " 0.679245283018868 0.320754716981132"; depth 53 ; unknown ; non-synonymous GL192453.1 samtools variation 1310198 1310198 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192453.1 samtools variation 1328067 1328067 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL192453.1 samtools variation 1328081 1328081 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL192453.1 samtools variation 1328102 1328102 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192453.1 samtools variation 1328162 1328162 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; known ; N/A GL192453.1 samtools variation 1372548 1372548 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; known ; N/A GL192453.1 samtools variation 1373341 1373341 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192453.1 samtools variation 1373564 1373564 . . . alleles " T C"; frequencies " 0.205882352941176 0.794117647058823"; depth 34 ; known ; N/A GL192453.1 samtools variation 1373807 1373807 . . . alleles " G A"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL192453.1 samtools variation 1402612 1402612 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 22 ; unknown ; non-synonymous GL192453.1 samtools variation 1414852 1414852 . . . alleles " G A"; frequencies " 0.707692307692308 0.292307692307692"; depth 65 ; known ; N/A GL192453.1 samtools variation 1414996 1414996 . . . alleles " C T"; frequencies " 0.315789473684211 0.684210526315789"; depth 57 ; known ; N/A GL192453.1 samtools variation 1424330 1424330 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192453.1 samtools variation 1424878 1424878 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192453.1 samtools variation 1433770 1433770 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192453.1 samtools variation 1440341 1440341 . . . alleles " A C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192453.1 samtools variation 1449086 1449086 . . . alleles " G T"; frequencies " 0.323529411764706 0.676470588235294"; depth 34 ; unknown ; N/A GL192453.1 samtools variation 1449212 1449212 . . . alleles " T C"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; unknown ; N/A GL192453.1 samtools variation 1451479 1451479 . . . alleles " T C"; frequencies " 0.406779661016949 0.593220338983051"; depth 59 ; unknown ; N/A GL192453.1 samtools variation 1452322 1452322 . . . alleles " T G"; frequencies " 0.323943661971831 0.676056338028169"; depth 71 ; known ; N/A GL192453.1 samtools variation 1481978 1481978 . . . alleles " C G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192453.1 samtools variation 1518174 1518174 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192453.1 samtools variation 1518181 1518181 . . . alleles " C A"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL192453.1 samtools variation 1519639 1519639 . . . alleles " T C"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; known ; N/A GL192453.1 samtools variation 1519793 1519793 . . . alleles " A G"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL192453.1 samtools variation 1520277 1520277 . . . alleles " A C"; frequencies " 0.203703703703704 0.796296296296296"; depth 54 ; unknown ; N/A GL192453.1 samtools variation 1520279 1520279 . . . alleles " G A"; frequencies " 0.203703703703704 0.796296296296296"; depth 54 ; unknown ; N/A GL192453.1 samtools variation 1522678 1522678 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192453.1 samtools variation 1523140 1523140 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192453.1 samtools variation 1531131 1531131 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 32 ; known ; N/A GL192453.1 samtools variation 1535494 1535494 . . . alleles " G A"; frequencies " 0.301204819277108 0.698795180722892"; depth 83 ; known ; N/A GL192453.1 samtools variation 1545165 1545165 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 24 ; known ; N/A GL192453.1 samtools variation 1552643 1552643 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192453.1 samtools variation 1552665 1552665 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192453.1 samtools variation 1553197 1553197 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192453.1 samtools variation 1553804 1553804 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192453.1 samtools variation 1557112 1557112 . . . alleles " C G"; frequencies " 0.303030303030303 0.696969696969697"; depth 33 ; known ; N/A GL192453.1 samtools variation 1558171 1558171 . . . alleles " A G"; frequencies " 0.475555555555556 0.524444444444444"; depth 450 ; known ; N/A GL192453.1 samtools variation 1560620 1560620 . . . alleles " C T"; frequencies " 0.490196078431373 0.504901960784314"; depth 408 ; known ; N/A GL192453.1 samtools variation 1561278 1561278 . . . alleles " A G"; frequencies " 0.384353741496599 0.615646258503401"; depth 294 ; known ; N/A GL192453.1 samtools variation 1561624 1561624 . . . alleles " A G"; frequencies " 0.62093023255814 0.37906976744186"; depth 430 ; known ; N/A GL192453.1 samtools variation 1562139 1562139 . . . alleles " G A"; frequencies " 0.426745329400197 0.573254670599803"; depth 1017 ; known ; N/A GL192453.1 samtools variation 1579480 1579480 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192453.1 samtools variation 1684519 1684519 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 42 ; known ; synonymous GL192453.1 samtools variation 1728825 1728825 . . . alleles " A G"; frequencies " 0.565789473684211 0.434210526315789"; depth 76 ; unknown ; synonymous GL192453.1 samtools variation 1730109 1730109 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 50 ; unknown ; non-synonymous GL192453.1 samtools variation 1744661 1744661 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192455.1 samtools variation 2340182 2340182 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192455.1 samtools variation 2418482 2418482 . . . alleles " C A"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL192455.1 samtools variation 2450434 2450434 . . . alleles " G A"; frequencies " 0.796511627906977 0.203488372093023"; depth 172 ; unknown ; N/A GL192455.1 samtools variation 2464638 2464638 . . . alleles " A G"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; known ; N/A GL192455.1 samtools variation 2465540 2465540 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 24 ; known ; N/A GL192455.1 samtools variation 2469050 2469050 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL192455.1 samtools variation 2472878 2472878 . . . alleles " G C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192455.1 samtools variation 2473857 2473857 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192455.1 samtools variation 2480334 2480334 . . . alleles " A G"; frequencies " 0.228915662650602 0.771084337349398"; depth 83 ; known ; N/A GL192455.1 samtools variation 2481507 2481507 . . . alleles " C A"; frequencies " 0.725806451612903 0.274193548387097"; depth 62 ; unknown ; N/A GL192455.1 samtools variation 2485294 2485294 . . . alleles " T C"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL192455.1 samtools variation 2488187 2488187 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 40 ; unknown ; N/A GL192455.1 samtools variation 2489091 2489091 . . . alleles " A G"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL192455.1 samtools variation 2506507 2506507 . . . alleles " T C"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL192455.1 samtools variation 2520784 2520784 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192455.1 samtools variation 2532767 2532767 . . . alleles " C A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192455.1 samtools variation 2545629 2545629 . . . alleles " C G"; frequencies " 0.766355140186916 0.233644859813084"; depth 107 ; unknown ; N/A GL192455.1 samtools variation 2550715 2550715 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192455.1 samtools variation 2551973 2551973 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192455.1 samtools variation 2555517 2555517 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192457.1 samtools variation 8555 8555 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192457.1 samtools variation 10669 10669 . . . alleles " C T"; frequencies " 0.543589743589744 0.456410256410256"; depth 195 ; unknown ; non-synonymous GL192457.1 samtools variation 15662 15662 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; non-synonymous GL192457.1 samtools variation 92166 92166 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL192457.1 samtools variation 131618 131618 . . . alleles " A G"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL192457.1 samtools variation 254161 254161 . . . alleles " T G"; frequencies " 0.327635327635328 0.672364672364672"; depth 351 ; known ; non-synonymous GL192457.1 samtools variation 278624 278624 . . . alleles " A C"; frequencies " 0.260869565217391 0.739130434782609"; depth 161 ; known ; N/A GL192457.1 samtools variation 295887 295887 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192457.1 samtools variation 341388 341388 . . . alleles " T C"; frequencies " 0.556363636363636 0.443636363636364"; depth 275 ; unknown ; synonymous GL192457.1 samtools variation 341474 341474 . . . alleles " G A"; frequencies " 0.397260273972603 0.602739726027397"; depth 73 ; unknown ; N/A GL192457.1 samtools variation 374021 374021 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192457.1 samtools variation 374023 374023 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192457.1 samtools variation 429907 429907 . . . alleles " C T"; frequencies " 0.487437185929648 0.512562814070352"; depth 796 ; unknown ; N/A GL192457.1 samtools variation 610821 610821 . . . alleles " T C"; frequencies " 0.465648854961832 0.534351145038168"; depth 262 ; unknown ; non-synonymous GL192457.1 samtools variation 613472 613472 . . . alleles " C T"; frequencies " 0.783625730994152 0.216374269005848"; depth 171 ; known ; non-synonymous GL192457.1 samtools variation 619801 619801 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192457.1 samtools variation 640108 640108 . . . alleles " A T"; frequencies " 0.202020202020202 0.797979797979798"; depth 99 ; known ; N/A GL192457.1 samtools variation 641950 641950 . . . alleles " G A"; frequencies " 0.346760070052539 0.653239929947461"; depth 1142 ; unknown ; N/A GL192457.1 samtools variation 647337 647337 . . . alleles " C T"; frequencies " 0.354969574036511 0.645030425963489"; depth 493 ; unknown ; synonymous GL192457.1 samtools variation 878215 878215 . . . alleles " G T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192457.1 samtools variation 903094 903094 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; non-synonymous GL192457.1 samtools variation 1051174 1051174 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 20 ; known ; synonymous GL192457.1 samtools variation 1051273 1051273 . . . alleles " C T"; frequencies " 0.238095238095238 0.761904761904762"; depth 63 ; known ; synonymous GL192457.1 samtools variation 1088006 1088006 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192457.1 samtools variation 1128688 1128688 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192457.1 samtools variation 1133921 1133921 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192457.1 samtools variation 1149211 1149211 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192457.1 samtools variation 1190278 1190278 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192457.1 samtools variation 1295061 1295061 . . . alleles " C G"; frequencies " 0.732253086419753 0.266975308641975"; depth 1296 ; known ; non-synonymous GL192457.1 samtools variation 1302108 1302108 . . . alleles " T C"; frequencies " 0.774193548387097 0.225806451612903"; depth 62 ; unknown ; N/A GL192457.1 samtools variation 1328289 1328289 . . . alleles " C G"; frequencies " 0.767857142857143 0.232142857142857"; depth 392 ; known ; non-synonymous GL192457.1 samtools variation 1333167 1333167 . . . alleles " G T"; frequencies " 0.212903225806452 0.787096774193548"; depth 620 ; known ; non-synonymous GL192457.1 samtools variation 1341397 1341397 . . . alleles " C T"; frequencies " 0.794520547945205 0.205479452054795"; depth 73 ; unknown ; N/A GL192457.1 samtools variation 1397675 1397675 . . . alleles " C T"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; known ; N/A GL192457.1 samtools variation 1494710 1494710 . . . alleles " G A"; frequencies " 0.205607476635514 0.794392523364486"; depth 107 ; known ; N/A GL192457.1 samtools variation 1563348 1563348 . . . alleles " A G"; frequencies " 0.74313408723748 0.25686591276252"; depth 619 ; known ; synonymous GL192457.1 samtools variation 1680267 1680267 . . . alleles " G A"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; non-synonymous GL192457.1 samtools variation 1680296 1680296 . . . alleles " C A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; non-synonymous GL192458.1 samtools variation 7150 7150 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192458.1 samtools variation 154696 154696 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192458.1 samtools variation 2337889 2337889 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192458.1 samtools variation 2340228 2340228 . . . alleles " A G"; frequencies " 0.525 0.475"; depth 40 ; unknown ; N/A GL192458.1 samtools variation 2340265 2340265 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL192458.1 samtools variation 2388768 2388768 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192458.1 samtools variation 2388796 2388796 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192458.1 samtools variation 2389113 2389113 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192458.1 samtools variation 2392731 2392731 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192458.1 samtools variation 2399545 2399545 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192458.1 samtools variation 2400109 2400109 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192458.1 samtools variation 2400563 2400563 . . . alleles " C T"; frequencies " 0.686274509803922 0.313725490196078"; depth 51 ; unknown ; synonymous GL192458.1 samtools variation 2406953 2406953 . . . alleles " C T"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL192458.1 samtools variation 2409993 2409993 . . . alleles " A C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192458.1 samtools variation 2412449 2412449 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192458.1 samtools variation 2414653 2414653 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192458.1 samtools variation 2415897 2415897 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192458.1 samtools variation 2416845 2416845 . . . alleles " A C"; frequencies " 0.212121212121212 0.787878787878788"; depth 33 ; unknown ; N/A GL192458.1 samtools variation 2419883 2419883 . . . alleles " T C"; frequencies " 0.638888888888889 0.361111111111111"; depth 108 ; unknown ; synonymous GL192458.1 samtools variation 2419934 2419934 . . . alleles " T C"; frequencies " 0.680412371134021 0.319587628865979"; depth 97 ; unknown ; synonymous GL192458.1 samtools variation 2421820 2421820 . . . alleles " A G"; frequencies " 0.675438596491228 0.324561403508772"; depth 114 ; unknown ; N/A GL192458.1 samtools variation 2422026 2422026 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192458.1 samtools variation 2422670 2422670 . . . alleles " T G"; frequencies " 0.707070707070707 0.292929292929293"; depth 99 ; unknown ; N/A GL192458.1 samtools variation 2422678 2422678 . . . alleles " A C"; frequencies " 0.724489795918367 0.275510204081633"; depth 98 ; unknown ; N/A GL192458.1 samtools variation 2509383 2509383 . . . alleles " T A"; frequencies " 0.766233766233766 0.233766233766234"; depth 77 ; unknown ; N/A GL192458.1 samtools variation 2509749 2509749 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192458.1 samtools variation 2512033 2512033 . . . alleles " A G"; frequencies " 0.608108108108108 0.391891891891892"; depth 74 ; unknown ; N/A GL192458.1 samtools variation 2516777 2516777 . . . alleles " G A"; frequencies " 0.716666666666667 0.283333333333333"; depth 120 ; unknown ; synonymous GL192458.1 samtools variation 2517221 2517221 . . . alleles " G A"; frequencies " 0.689922480620155 0.310077519379845"; depth 129 ; unknown ; synonymous GL192458.1 samtools variation 2527917 2527917 . . . alleles " G A"; frequencies " 0.693877551020408 0.306122448979592"; depth 98 ; unknown ; synonymous GL192458.1 samtools variation 2527972 2527972 . . . alleles " G A"; frequencies " 0.674242424242424 0.325757575757576"; depth 132 ; unknown ; synonymous GL192458.1 samtools variation 2529704 2529704 . . . alleles " G A"; frequencies " 0.753968253968254 0.238095238095238"; depth 126 ; unknown ; synonymous GL192459.1 samtools variation 1528457 1528457 . . . alleles " G T"; frequencies " 0.469026548672566 0.530973451327434"; depth 113 ; unknown ; N/A GL192459.1 samtools variation 1529918 1529918 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 55 ; unknown ; N/A GL192459.1 samtools variation 1650149 1650149 . . . alleles " C G"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; unknown ; synonymous GL192460.1 samtools variation 1815074 1815074 . . . alleles " C A"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; non-synonymous GL192460.1 samtools variation 1843144 1843144 . . . alleles " C A"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL192460.1 samtools variation 1953669 1953669 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 46 ; unknown ; N/A GL192460.1 samtools variation 1956898 1956898 . . . alleles " G T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192460.1 samtools variation 1957164 1957164 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192460.1 samtools variation 1957781 1957781 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; unknown ; N/A GL192460.1 samtools variation 1958138 1958138 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; unknown ; N/A GL192460.1 samtools variation 1959509 1959509 . . . alleles " G T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192460.1 samtools variation 1959545 1959545 . . . alleles " C T"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL192460.1 samtools variation 1983150 1983150 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192460.1 samtools variation 1984468 1984468 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192460.1 samtools variation 1988218 1988218 . . . alleles " T A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192460.1 samtools variation 2013468 2013468 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192460.1 samtools variation 2046980 2046980 . . . alleles " G A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192460.1 samtools variation 2059210 2059210 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192460.1 samtools variation 2080860 2080860 . . . alleles " G C"; frequencies " 0.642540620384047 0.357459379615953"; depth 677 ; unknown ; non-synonymous GL192460.1 samtools variation 2081007 2081007 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192460.1 samtools variation 2082568 2082568 . . . alleles " C T"; frequencies " 0.63501849568434 0.36498150431566"; depth 811 ; unknown ; synonymous GL192460.1 samtools variation 2127547 2127547 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192460.1 samtools variation 2153208 2153208 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192460.1 samtools variation 2161857 2161857 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; unknown ; N/A GL192460.1 samtools variation 2162851 2162851 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192460.1 samtools variation 2165226 2165226 . . . alleles " G A"; frequencies " 0.341463414634146 0.658536585365854"; depth 41 ; unknown ; N/A GL192460.1 samtools variation 2326342 2326342 . . . alleles " T C"; frequencies " 0.395604395604396 0.604395604395604"; depth 91 ; unknown ; N/A GL192460.1 samtools variation 2329766 2329766 . . . alleles " C A"; frequencies " 0.285714285714286 0.714285714285714"; depth 42 ; unknown ; N/A GL192460.1 samtools variation 2331508 2331508 . . . alleles " A C"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL192460.1 samtools variation 2333507 2333507 . . . alleles " G T"; frequencies " 0.336206896551724 0.663793103448276"; depth 348 ; unknown ; N/A GL192460.1 samtools variation 2333513 2333513 . . . alleles " T A"; frequencies " 0.342105263157895 0.657894736842105"; depth 342 ; unknown ; N/A GL192460.1 samtools variation 2335711 2335711 . . . alleles " G A"; frequencies " 0.241379310344828 0.758620689655172"; depth 348 ; unknown ; N/A GL192461.1 samtools variation 13982 13982 . . . alleles " G A"; frequencies " 0.511111111111111 0.488888888888889"; depth 45 ; known ; non-synonymous GL192461.1 samtools variation 216937 216937 . . . alleles " C G"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; synonymous GL192461.1 samtools variation 220564 220564 . . . alleles " A G"; frequencies " 0.425531914893617 0.574468085106383"; depth 47 ; known ; N/A GL192461.1 samtools variation 758673 758673 . . . alleles " G A"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192461.1 samtools variation 760431 760431 . . . alleles " C G"; frequencies " 0.348571428571429 0.651428571428571"; depth 175 ; known ; N/A GL192461.1 samtools variation 777393 777393 . . . alleles " T C"; frequencies " 0.315602836879433 0.684397163120567"; depth 282 ; known ; non-synonymous GL192461.1 samtools variation 792579 792579 . . . alleles " T C"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL192461.1 samtools variation 1004769 1004769 . . . alleles " A C"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; synonymous GL192461.1 samtools variation 1034433 1034433 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 44 ; unknown ; non-synonymous GL192461.1 samtools variation 1055486 1055486 . . . alleles " T G"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; synonymous GL192461.1 samtools variation 1058568 1058568 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; unknown ; synonymous GL192461.1 samtools variation 1058616 1058616 . . . alleles " C T"; frequencies " 0.519230769230769 0.480769230769231"; depth 52 ; unknown ; synonymous GL192461.1 samtools variation 1076443 1076443 . . . alleles " C T"; frequencies " 0.768115942028985 0.231884057971014"; depth 138 ; unknown ; synonymous GL192461.1 samtools variation 1078732 1078732 . . . alleles " G A"; frequencies " 0.755905511811024 0.244094488188976"; depth 127 ; known ; synonymous GL192461.1 samtools variation 1275913 1275913 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL192461.1 samtools variation 1277291 1277291 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192461.1 samtools variation 1289046 1289046 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192461.1 samtools variation 1308915 1308915 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 56 ; known ; synonymous GL192461.1 samtools variation 1353018 1353018 . . . alleles " C T"; frequencies " 0.605263157894737 0.394736842105263"; depth 76 ; unknown ; non-synonymous GL192461.1 samtools variation 1391234 1391234 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 52 ; known ; non-synonymous GL192461.1 samtools variation 1631458 1631458 . . . alleles " A G"; frequencies " 0.282608695652174 0.717391304347826"; depth 46 ; known ; N/A GL192461.1 samtools variation 1631504 1631504 . . . alleles " A G"; frequencies " 0.236842105263158 0.763157894736842"; depth 38 ; known ; N/A GL192461.1 samtools variation 1700224 1700224 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192461.1 samtools variation 1896165 1896165 . . . alleles " C T"; frequencies " 0.56390977443609 0.43609022556391"; depth 133 ; unknown ; N/A GL192461.1 samtools variation 2324300 2324300 . . . alleles " C T"; frequencies " 0.228571428571429 0.771428571428571"; depth 140 ; known ; N/A GL192461.1 samtools variation 2324948 2324948 . . . alleles " G A"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL192462.1 samtools variation 178849 178849 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; non-synonymous GL192462.1 samtools variation 178872 178872 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; synonymous GL192462.1 samtools variation 1334737 1334737 . . . alleles " G A"; frequencies " 0.218181818181818 0.781818181818182"; depth 55 ; unknown ; synonymous GL192462.1 samtools variation 1357674 1357674 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192462.1 samtools variation 1357720 1357720 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192462.1 samtools variation 1358880 1358880 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192462.1 samtools variation 1360836 1360836 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192462.1 samtools variation 1360936 1360936 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192462.1 samtools variation 1373268 1373268 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192462.1 samtools variation 1408043 1408043 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192462.1 samtools variation 1408131 1408131 . . . alleles " G T"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192462.1 samtools variation 1408406 1408406 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192462.1 samtools variation 1408494 1408494 . . . alleles " T C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192462.1 samtools variation 1408515 1408515 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192462.1 samtools variation 1408648 1408648 . . . alleles " A G"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL192462.1 samtools variation 1408704 1408704 . . . alleles " C A"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL192462.1 samtools variation 1408942 1408942 . . . alleles " G A"; frequencies " 0.728260869565217 0.271739130434783"; depth 92 ; unknown ; N/A GL192462.1 samtools variation 1409006 1409006 . . . alleles " A G"; frequencies " 0.684931506849315 0.301369863013699"; depth 73 ; unknown ; N/A GL192462.1 samtools variation 1409027 1409027 . . . alleles " A C"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192462.1 samtools variation 1409680 1409680 . . . alleles " A G"; frequencies " 0.542857142857143 0.457142857142857"; depth 70 ; unknown ; N/A GL192462.1 samtools variation 1409704 1409704 . . . alleles " T C"; frequencies " 0.569444444444444 0.430555555555556"; depth 144 ; unknown ; N/A GL192462.1 samtools variation 1410483 1410483 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192462.1 samtools variation 1410561 1410561 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192462.1 samtools variation 1426927 1426927 . . . alleles " T A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192462.1 samtools variation 1452083 1452083 . . . alleles " T C"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; known ; synonymous GL192462.1 samtools variation 1590814 1590814 . . . alleles " A G"; frequencies " 0.674943566591422 0.325056433408578"; depth 443 ; unknown ; N/A GL192462.1 samtools variation 1591574 1591574 . . . alleles " C T"; frequencies " 0.633217993079585 0.366782006920415"; depth 289 ; unknown ; N/A GL192462.1 samtools variation 1591858 1591858 . . . alleles " C T"; frequencies " 0.534798534798535 0.465201465201465"; depth 546 ; unknown ; N/A GL192462.1 samtools variation 1596881 1596881 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192462.1 samtools variation 1596882 1596882 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192462.1 samtools variation 1599237 1599237 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192462.1 samtools variation 1600504 1600504 . . . alleles " G A"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192462.1 samtools variation 1600803 1600803 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192462.1 samtools variation 1601083 1601083 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192462.1 samtools variation 1601105 1601105 . . . alleles " T A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192462.1 samtools variation 1601159 1601159 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192462.1 samtools variation 1603182 1603182 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 54 ; known ; synonymous GL192462.1 samtools variation 1603321 1603321 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL192462.1 samtools variation 1612742 1612742 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192462.1 samtools variation 1612755 1612755 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192462.1 samtools variation 1616363 1616363 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192462.1 samtools variation 1618267 1618267 . . . alleles " C G"; frequencies " 0.403022670025189 0.596977329974811"; depth 397 ; known ; synonymous GL192462.1 samtools variation 1750090 1750090 . . . alleles " T C"; frequencies " 0.511627906976744 0.488372093023256"; depth 129 ; unknown ; N/A GL192462.1 samtools variation 1750286 1750286 . . . alleles " T A"; frequencies " 0.398305084745763 0.601694915254237"; depth 118 ; unknown ; N/A GL192462.1 samtools variation 1750339 1750339 . . . alleles " G A"; frequencies " 0.510204081632653 0.489795918367347"; depth 98 ; unknown ; N/A GL192462.1 samtools variation 1750396 1750396 . . . alleles " C T"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL192462.1 samtools variation 1750397 1750397 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL192462.1 samtools variation 1750871 1750871 . . . alleles " T C"; frequencies " 0.596385542168675 0.403614457831325"; depth 166 ; unknown ; N/A GL192462.1 samtools variation 1750940 1750940 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 150 ; unknown ; N/A GL192462.1 samtools variation 1751423 1751423 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 104 ; unknown ; N/A GL192462.1 samtools variation 1751492 1751492 . . . alleles " G A"; frequencies " 0.602150537634409 0.397849462365591"; depth 93 ; unknown ; N/A GL192462.1 samtools variation 1751791 1751791 . . . alleles " T C"; frequencies " 0.504950495049505 0.495049504950495"; depth 101 ; unknown ; N/A GL192462.1 samtools variation 1752158 1752158 . . . alleles " A G"; frequencies " 0.581699346405229 0.418300653594771"; depth 153 ; unknown ; N/A GL192462.1 samtools variation 1752227 1752227 . . . alleles " T G"; frequencies " 0.321917808219178 0.678082191780822"; depth 146 ; unknown ; N/A GL192462.1 samtools variation 1752649 1752649 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; unknown ; N/A GL192462.1 samtools variation 1752675 1752675 . . . alleles " A T"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; unknown ; N/A GL192462.1 samtools variation 1752755 1752755 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192462.1 samtools variation 1752849 1752849 . . . alleles " C T"; frequencies " 0.673469387755102 0.326530612244898"; depth 49 ; unknown ; N/A GL192462.1 samtools variation 1752952 1752952 . . . alleles " T C"; frequencies " 0.338983050847458 0.661016949152542"; depth 59 ; unknown ; N/A GL192462.1 samtools variation 1753081 1753081 . . . alleles " G A"; frequencies " 0.62 0.38"; depth 50 ; unknown ; N/A GL192462.1 samtools variation 1753325 1753325 . . . alleles " C T"; frequencies " 0.73469387755102 0.26530612244898"; depth 49 ; unknown ; N/A GL192462.1 samtools variation 1753711 1753711 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; N/A GL192462.1 samtools variation 1753827 1753827 . . . alleles " A G"; frequencies " 0.577777777777778 0.422222222222222"; depth 45 ; unknown ; N/A GL192462.1 samtools variation 1769079 1769079 . . . alleles " C T"; frequencies " 0.504950495049505 0.495049504950495"; depth 101 ; unknown ; N/A GL192462.1 samtools variation 1769080 1769080 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 100 ; unknown ; N/A GL192462.1 samtools variation 1848596 1848596 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 34 ; unknown ; N/A GL192462.1 samtools variation 1855134 1855134 . . . alleles " A G"; frequencies " 0.380281690140845 0.619718309859155"; depth 71 ; unknown ; N/A GL192463.1 samtools variation 121824 121824 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192463.1 samtools variation 121861 121861 . . . alleles " C T"; frequencies " 0.699029126213592 0.300970873786408"; depth 103 ; known ; N/A GL192463.1 samtools variation 334721 334721 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192463.1 samtools variation 336763 336763 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192463.1 samtools variation 433802 433802 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192463.1 samtools variation 446599 446599 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192463.1 samtools variation 447905 447905 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192463.1 samtools variation 448168 448168 . . . alleles " G C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192463.1 samtools variation 448207 448207 . . . alleles " T A"; frequencies " 0.594594594594595 0.405405405405405"; depth 37 ; known ; N/A GL192463.1 samtools variation 448258 448258 . . . alleles " G A"; frequencies " 0.574468085106383 0.425531914893617"; depth 47 ; known ; N/A GL192463.1 samtools variation 451214 451214 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192463.1 samtools variation 549360 549360 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 81 ; known ; synonymous GL192463.1 samtools variation 550335 550335 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; synonymous GL192463.1 samtools variation 591651 591651 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192463.1 samtools variation 591723 591723 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192463.1 samtools variation 674382 674382 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192463.1 samtools variation 706426 706426 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192463.1 samtools variation 706526 706526 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192463.1 samtools variation 712851 712851 . . . alleles " G T"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL192463.1 samtools variation 713942 713942 . . . alleles " G A"; frequencies " 0.541062801932367 0.458937198067633"; depth 207 ; known ; N/A GL192463.1 samtools variation 716694 716694 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL192463.1 samtools variation 718502 718502 . . . alleles " G A"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; known ; N/A GL192463.1 samtools variation 718987 718987 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192463.1 samtools variation 742034 742034 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192463.1 samtools variation 742070 742070 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192463.1 samtools variation 742212 742212 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192463.1 samtools variation 742364 742364 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192463.1 samtools variation 859103 859103 . . . alleles " C T"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; synonymous GL192463.1 samtools variation 867029 867029 . . . alleles " C T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; synonymous GL192463.1 samtools variation 867156 867156 . . . alleles " G A"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; unknown ; N/A GL192463.1 samtools variation 867162 867162 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 32 ; unknown ; N/A GL192463.1 samtools variation 867980 867980 . . . alleles " G A"; frequencies " 0.564516129032258 0.435483870967742"; depth 62 ; unknown ; non-synonymous GL192463.1 samtools variation 868435 868435 . . . alleles " T C"; frequencies " 0.568965517241379 0.431034482758621"; depth 58 ; unknown ; N/A GL192463.1 samtools variation 868499 868499 . . . alleles " G A"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL192463.1 samtools variation 868772 868772 . . . alleles " C G"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL192463.1 samtools variation 869078 869078 . . . alleles " G C"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; N/A GL192463.1 samtools variation 869681 869681 . . . alleles " G A"; frequencies " 0.604395604395604 0.395604395604396"; depth 91 ; unknown ; N/A GL192463.1 samtools variation 870519 870519 . . . alleles " T C"; frequencies " 0.630434782608696 0.369565217391304"; depth 46 ; unknown ; N/A GL192463.1 samtools variation 870560 870560 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 57 ; unknown ; N/A GL192463.1 samtools variation 871218 871218 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 48 ; unknown ; N/A GL192463.1 samtools variation 871735 871735 . . . alleles " A G"; frequencies " 0.622222222222222 0.377777777777778"; depth 90 ; unknown ; N/A GL192463.1 samtools variation 900664 900664 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192463.1 samtools variation 901136 901136 . . . alleles " C G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192463.1 samtools variation 902237 902237 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; synonymous GL192463.1 samtools variation 1127986 1127986 . . . alleles " A G"; frequencies " 0.241379310344828 0.758620689655172"; depth 58 ; unknown ; N/A GL192463.1 samtools variation 1131075 1131075 . . . alleles " A G"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL192463.1 samtools variation 1131147 1131147 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192463.1 samtools variation 1153150 1153150 . . . alleles " G T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192463.1 samtools variation 1153463 1153463 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192463.1 samtools variation 1153568 1153568 . . . alleles " C T"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL192463.1 samtools variation 1153595 1153595 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192463.1 samtools variation 1156643 1156643 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192463.1 samtools variation 1161584 1161584 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; unknown ; N/A GL192463.1 samtools variation 1161640 1161640 . . . alleles " T A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192463.1 samtools variation 1163376 1163376 . . . alleles " A G"; frequencies " 0.458333333333333 0.541666666666667"; depth 48 ; unknown ; N/A GL192463.1 samtools variation 1163525 1163525 . . . alleles " T G"; frequencies " 0.58695652173913 0.41304347826087"; depth 46 ; unknown ; N/A GL192463.1 samtools variation 1165255 1165255 . . . alleles " T A"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL192463.1 samtools variation 1165392 1165392 . . . alleles " T G"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192463.1 samtools variation 1179433 1179433 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192463.1 samtools variation 1179565 1179565 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192463.1 samtools variation 1187585 1187585 . . . alleles " A C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192463.1 samtools variation 1187691 1187691 . . . alleles " T C"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL192463.1 samtools variation 1194203 1194203 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192463.1 samtools variation 1194696 1194696 . . . alleles " C T"; frequencies " 0.3125 0.6875"; depth 32 ; unknown ; N/A GL192463.1 samtools variation 1194796 1194796 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192463.1 samtools variation 1195086 1195086 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; unknown ; N/A GL192463.1 samtools variation 1197332 1197332 . . . alleles " A G"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192463.1 samtools variation 1199009 1199009 . . . alleles " T C"; frequencies " 0.377892030848329 0.622107969151671"; depth 389 ; unknown ; synonymous GL192463.1 samtools variation 1200873 1200873 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192463.1 samtools variation 1201375 1201375 . . . alleles " A T"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192463.1 samtools variation 1201463 1201463 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192463.1 samtools variation 1201468 1201468 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192463.1 samtools variation 1201623 1201623 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192463.1 samtools variation 1201836 1201836 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192463.1 samtools variation 1201921 1201921 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192463.1 samtools variation 1202410 1202410 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL192463.1 samtools variation 1202966 1202966 . . . alleles " A T"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL192463.1 samtools variation 1203262 1203262 . . . alleles " G A"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL192463.1 samtools variation 1203676 1203676 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192463.1 samtools variation 1204018 1204018 . . . alleles " C T"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; unknown ; N/A GL192463.1 samtools variation 1204313 1204313 . . . alleles " G A"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192463.1 samtools variation 1204389 1204389 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192463.1 samtools variation 1204393 1204393 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192463.1 samtools variation 1206561 1206561 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192463.1 samtools variation 1206745 1206745 . . . alleles " G A"; frequencies " 0.340909090909091 0.659090909090909"; depth 44 ; unknown ; N/A GL192463.1 samtools variation 1206944 1206944 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 32 ; unknown ; N/A GL192463.1 samtools variation 1208995 1208995 . . . alleles " T C"; frequencies " 0.36986301369863 0.63013698630137"; depth 146 ; unknown ; N/A GL192463.1 samtools variation 1209162 1209162 . . . alleles " A G"; frequencies " 0.382352941176471 0.617647058823529"; depth 68 ; unknown ; N/A GL192463.1 samtools variation 1209163 1209163 . . . alleles " A C"; frequencies " 0.382352941176471 0.617647058823529"; depth 68 ; unknown ; N/A GL192463.1 samtools variation 1210244 1210244 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 72 ; unknown ; synonymous GL192463.1 samtools variation 1213313 1213313 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192463.1 samtools variation 1213736 1213736 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192463.1 samtools variation 1214312 1214312 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; N/A GL192463.1 samtools variation 1214559 1214559 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 32 ; unknown ; N/A GL192463.1 samtools variation 1216642 1216642 . . . alleles " C G"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192464.1 samtools variation 91112 91112 . . . alleles " A C"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; known ; N/A GL192464.1 samtools variation 97168 97168 . . . alleles " G A"; frequencies " 0.680851063829787 0.319148936170213"; depth 47 ; unknown ; synonymous GL192464.1 samtools variation 103942 103942 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 48 ; unknown ; non-synonymous GL192464.1 samtools variation 129496 129496 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; synonymous GL192464.1 samtools variation 383720 383720 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192464.1 samtools variation 1127525 1127525 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192464.1 samtools variation 1143779 1143779 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192464.1 samtools variation 1147424 1147424 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192464.1 samtools variation 1171391 1171391 . . . alleles " G T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192464.1 samtools variation 1174561 1174561 . . . alleles " T C"; frequencies " 0.708108108108108 0.291891891891892"; depth 185 ; known ; N/A GL192464.1 samtools variation 1175585 1175585 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192464.1 samtools variation 1177764 1177764 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192464.1 samtools variation 1194454 1194454 . . . alleles " T C"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL192464.1 samtools variation 1214351 1214351 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL192464.1 samtools variation 1216831 1216831 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192464.1 samtools variation 1217326 1217326 . . . alleles " T A"; frequencies " 0.754716981132076 0.245283018867925"; depth 53 ; unknown ; N/A GL192464.1 samtools variation 1413042 1413042 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192464.1 samtools variation 1589739 1589739 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192464.1 samtools variation 1590230 1590230 . . . alleles " G C"; frequencies " 0.27027027027027 0.72972972972973"; depth 37 ; known ; N/A GL192464.1 samtools variation 1592457 1592457 . . . alleles " T A"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL192464.1 samtools variation 2334391 2334391 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; known ; N/A GL192464.1 samtools variation 2346642 2346642 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192465.1 samtools variation 874337 874337 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192465.1 samtools variation 970521 970521 . . . alleles " G C"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL192465.1 samtools variation 971028 971028 . . . alleles " A C"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; N/A GL192465.1 samtools variation 1362501 1362501 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192465.1 samtools variation 1717818 1717818 . . . alleles " C G"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; known ; N/A GL192465.1 samtools variation 1717823 1717823 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 42 ; known ; N/A GL192465.1 samtools variation 1718020 1718020 . . . alleles " C T"; frequencies " 0.681159420289855 0.318840579710145"; depth 69 ; unknown ; N/A GL192465.1 samtools variation 1718548 1718548 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL192465.1 samtools variation 1719614 1719614 . . . alleles " C T"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; unknown ; N/A GL192465.1 samtools variation 1719897 1719897 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 76 ; unknown ; N/A GL192465.1 samtools variation 1720467 1720467 . . . alleles " C T"; frequencies " 0.705479452054795 0.294520547945205"; depth 146 ; unknown ; N/A GL192465.1 samtools variation 1721212 1721212 . . . alleles " C G"; frequencies " 0.63953488372093 0.36046511627907"; depth 86 ; unknown ; N/A GL192465.1 samtools variation 1721411 1721411 . . . alleles " A G"; frequencies " 0.452380952380952 0.547619047619048"; depth 42 ; unknown ; N/A GL192465.1 samtools variation 1732346 1732346 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192465.1 samtools variation 1786574 1786574 . . . alleles " G T"; frequencies " 0.726027397260274 0.273972602739726"; depth 219 ; unknown ; N/A GL192465.1 samtools variation 1786964 1786964 . . . alleles " T C"; frequencies " 0.671111111111111 0.328888888888889"; depth 225 ; unknown ; N/A GL192465.1 samtools variation 1787598 1787598 . . . alleles " C T"; frequencies " 0.578125 0.421875"; depth 64 ; unknown ; N/A GL192465.1 samtools variation 1804912 1804912 . . . alleles " C G"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; unknown ; N/A GL192465.1 samtools variation 1814528 1814528 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; N/A GL192465.1 samtools variation 1827906 1827906 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; known ; N/A GL192465.1 samtools variation 1827929 1827929 . . . alleles " C T"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; unknown ; N/A GL192465.1 samtools variation 1828103 1828103 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192465.1 samtools variation 1836899 1836899 . . . alleles " G A"; frequencies " 0.765079365079365 0.234920634920635"; depth 315 ; known ; synonymous GL192465.1 samtools variation 1839890 1839890 . . . alleles " T C"; frequencies " 0.377777777777778 0.622222222222222"; depth 135 ; unknown ; N/A GL192465.1 samtools variation 1840028 1840028 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 77 ; unknown ; N/A GL192465.1 samtools variation 1840049 1840049 . . . alleles " G A"; frequencies " 0.354430379746835 0.645569620253165"; depth 79 ; unknown ; N/A GL192465.1 samtools variation 1840125 1840125 . . . alleles " G A"; frequencies " 0.216867469879518 0.783132530120482"; depth 83 ; unknown ; N/A GL192465.1 samtools variation 1840294 1840294 . . . alleles " C G"; frequencies " 0.3 0.7"; depth 40 ; unknown ; N/A GL192465.1 samtools variation 1840368 1840368 . . . alleles " T C"; frequencies " 0.278481012658228 0.721518987341772"; depth 79 ; known ; N/A GL192465.1 samtools variation 1840813 1840813 . . . alleles " G T"; frequencies " 0.307692307692308 0.692307692307692"; depth 39 ; unknown ; N/A GL192465.1 samtools variation 1840818 1840818 . . . alleles " G T"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; unknown ; N/A GL192465.1 samtools variation 1841008 1841008 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 85 ; unknown ; N/A GL192465.1 samtools variation 1841207 1841207 . . . alleles " G A"; frequencies " 0.425 0.575"; depth 80 ; unknown ; N/A GL192465.1 samtools variation 1841597 1841597 . . . alleles " A G"; frequencies " 0.283333333333333 0.716666666666667"; depth 60 ; unknown ; N/A GL192465.1 samtools variation 1841804 1841804 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192465.1 samtools variation 1843339 1843339 . . . alleles " C T"; frequencies " 0.784313725490196 0.215686274509804"; depth 255 ; known ; N/A GL192465.1 samtools variation 1843785 1843785 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; N/A GL192465.1 samtools variation 1843790 1843790 . . . alleles " C A"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192465.1 samtools variation 1846421 1846421 . . . alleles " C A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192465.1 samtools variation 1849316 1849316 . . . alleles " T C"; frequencies " 0.260869565217391 0.739130434782609"; depth 46 ; unknown ; synonymous GL192465.1 samtools variation 1850376 1850376 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192465.1 samtools variation 1859093 1859093 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 68 ; unknown ; synonymous GL192465.1 samtools variation 1863777 1863777 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL192465.1 samtools variation 1863826 1863826 . . . alleles " C G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192465.1 samtools variation 1865888 1865888 . . . alleles " G T"; frequencies " 0.375 0.625"; depth 48 ; unknown ; N/A GL192465.1 samtools variation 1867093 1867093 . . . alleles " C A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192465.1 samtools variation 1867742 1867742 . . . alleles " A G"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL192465.1 samtools variation 1870217 1870217 . . . alleles " C A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192465.1 samtools variation 2108688 2108688 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192465.1 samtools variation 2116393 2116393 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192465.1 samtools variation 2117905 2117905 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192465.1 samtools variation 2118722 2118722 . . . alleles " A G"; frequencies " 0.710144927536232 0.289855072463768"; depth 69 ; unknown ; N/A GL192465.1 samtools variation 2119967 2119967 . . . alleles " C T"; frequencies " 0.314814814814815 0.685185185185185"; depth 54 ; unknown ; N/A GL192466.1 samtools variation 1733805 1733805 . . . alleles " G T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; non-synonymous GL192466.1 samtools variation 1734237 1734237 . . . alleles " T C"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; known ; N/A GL192466.1 samtools variation 1734540 1734540 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192466.1 samtools variation 1734753 1734753 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 55 ; unknown ; N/A GL192466.1 samtools variation 1992020 1992020 . . . alleles " T A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; synonymous GL192467.1 samtools variation 150357 150357 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192467.1 samtools variation 150717 150717 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192467.1 samtools variation 821181 821181 . . . alleles " T G"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; N/A GL192467.1 samtools variation 821392 821392 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 36 ; known ; N/A GL192467.1 samtools variation 1011568 1011568 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; non-synonymous GL192467.1 samtools variation 1024898 1024898 . . . alleles " A G"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; synonymous GL192467.1 samtools variation 1029511 1029511 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 76 ; known ; non-synonymous GL192467.1 samtools variation 1343713 1343713 . . . alleles " C T"; frequencies " 0.642095053346266 0.357904946653734"; depth 1031 ; unknown ; N/A GL192467.1 samtools variation 1717185 1717185 . . . alleles " A G"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; synonymous GL192467.1 samtools variation 1791862 1791862 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192467.1 samtools variation 1791890 1791890 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192467.1 samtools variation 1792783 1792783 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192467.1 samtools variation 1797114 1797114 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192467.1 samtools variation 1799846 1799846 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL192467.1 samtools variation 1799902 1799902 . . . alleles " C T"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL192467.1 samtools variation 1819787 1819787 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; synonymous GL192467.1 samtools variation 1980512 1980512 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192468.1 samtools variation 1028873 1028873 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 48 ; known ; N/A GL192468.1 samtools variation 1426423 1426423 . . . alleles " T C"; frequencies " 0.342857142857143 0.657142857142857"; depth 35 ; known ; synonymous GL192468.1 samtools variation 1492475 1492475 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192468.1 samtools variation 1831718 1831718 . . . alleles " A C"; frequencies " 0.595744680851064 0.404255319148936"; depth 141 ; unknown ; N/A GL192468.1 samtools variation 1839588 1839588 . . . alleles " C T"; frequencies " 0.48582995951417 0.51417004048583"; depth 247 ; known ; synonymous GL192468.1 samtools variation 1842659 1842659 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192468.1 samtools variation 1843984 1843984 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192468.1 samtools variation 1844001 1844001 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192468.1 samtools variation 1895806 1895806 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 36 ; unknown ; N/A GL192468.1 samtools variation 1895922 1895922 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192468.1 samtools variation 1896086 1896086 . . . alleles " C T"; frequencies " 0.394736842105263 0.605263157894737"; depth 38 ; unknown ; N/A GL192468.1 samtools variation 1896167 1896167 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192468.1 samtools variation 1896268 1896268 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 32 ; unknown ; N/A GL192468.1 samtools variation 1896739 1896739 . . . alleles " T A"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; N/A GL192468.1 samtools variation 1897145 1897145 . . . alleles " C A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192468.1 samtools variation 2137520 2137520 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 65 ; known ; N/A GL192469.1 samtools variation 189776 189776 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192469.1 samtools variation 239399 239399 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192469.1 samtools variation 244548 244548 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192469.1 samtools variation 265097 265097 . . . alleles " A C"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; unknown ; N/A GL192469.1 samtools variation 276100 276100 . . . alleles " C T"; frequencies " 0.212121212121212 0.787878787878788"; depth 33 ; unknown ; N/A GL192469.1 samtools variation 705667 705667 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192469.1 samtools variation 715056 715056 . . . alleles " G C"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192469.1 samtools variation 736271 736271 . . . alleles " T C"; frequencies " 0.69811320754717 0.30188679245283"; depth 106 ; unknown ; N/A GL192469.1 samtools variation 737905 737905 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 88 ; unknown ; N/A GL192469.1 samtools variation 740147 740147 . . . alleles " T C"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL192469.1 samtools variation 740182 740182 . . . alleles " T G"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL192469.1 samtools variation 747332 747332 . . . alleles " A T"; frequencies " 0.689655172413793 0.310344827586207"; depth 116 ; known ; N/A GL192469.1 samtools variation 758835 758835 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192469.1 samtools variation 775749 775749 . . . alleles " C A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192469.1 samtools variation 781005 781005 . . . alleles " C G"; frequencies " 0.45 0.55"; depth 60 ; unknown ; N/A GL192469.1 samtools variation 781253 781253 . . . alleles " A C"; frequencies " 0.483870967741935 0.516129032258065"; depth 62 ; unknown ; N/A GL192469.1 samtools variation 784711 784711 . . . alleles " T G"; frequencies " 0.297297297297297 0.702702702702703"; depth 37 ; unknown ; N/A GL192469.1 samtools variation 805278 805278 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192469.1 samtools variation 806374 806374 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192469.1 samtools variation 818473 818473 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192469.1 samtools variation 821631 821631 . . . alleles " T A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL192469.1 samtools variation 821636 821636 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192469.1 samtools variation 822827 822827 . . . alleles " C G"; frequencies " 0.301033591731266 0.698966408268734"; depth 774 ; known ; non-synonymous GL192469.1 samtools variation 822874 822874 . . . alleles " T C"; frequencies " 0.289356984478936 0.710643015521064"; depth 902 ; known ; synonymous GL192469.1 samtools variation 824451 824451 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; synonymous GL192469.1 samtools variation 824925 824925 . . . alleles " G T"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; N/A GL192469.1 samtools variation 832304 832304 . . . alleles " T G"; frequencies " 0.382352941176471 0.617647058823529"; depth 68 ; known ; N/A GL192469.1 samtools variation 835199 835199 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 105 ; known ; N/A GL192469.1 samtools variation 835244 835244 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 75 ; known ; N/A GL192469.1 samtools variation 837676 837676 . . . alleles " G T"; frequencies " 0.25 0.75"; depth 32 ; known ; N/A GL192469.1 samtools variation 837760 837760 . . . alleles " T C"; frequencies " 0.353846153846154 0.646153846153846"; depth 65 ; unknown ; N/A GL192469.1 samtools variation 838714 838714 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 69 ; unknown ; N/A GL192469.1 samtools variation 840345 840345 . . . alleles " T C"; frequencies " 0.677966101694915 0.322033898305085"; depth 59 ; unknown ; N/A GL192469.1 samtools variation 840730 840730 . . . alleles " T A"; frequencies " 0.727272727272727 0.272727272727273"; depth 55 ; unknown ; N/A GL192469.1 samtools variation 840742 840742 . . . alleles " C T"; frequencies " 0.732142857142857 0.267857142857143"; depth 56 ; unknown ; N/A GL192469.1 samtools variation 849208 849208 . . . alleles " A G"; frequencies " 0.323383084577114 0.676616915422886"; depth 201 ; known ; N/A GL192469.1 samtools variation 866413 866413 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL192469.1 samtools variation 867220 867220 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192469.1 samtools variation 868999 868999 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192469.1 samtools variation 874891 874891 . . . alleles " G A"; frequencies " 0.462809917355372 0.537190082644628"; depth 121 ; unknown ; N/A GL192469.1 samtools variation 875200 875200 . . . alleles " G T"; frequencies " 0.520833333333333 0.479166666666667"; depth 48 ; unknown ; N/A GL192469.1 samtools variation 875278 875278 . . . alleles " C A"; frequencies " 0.72 0.28"; depth 50 ; unknown ; N/A GL192469.1 samtools variation 876062 876062 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192469.1 samtools variation 876094 876094 . . . alleles " A G"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL192469.1 samtools variation 876401 876401 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192469.1 samtools variation 877027 877027 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; N/A GL192469.1 samtools variation 879507 879507 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL192469.1 samtools variation 879976 879976 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL192469.1 samtools variation 881276 881276 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL192469.1 samtools variation 881338 881338 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192469.1 samtools variation 889902 889902 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192469.1 samtools variation 892863 892863 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192469.1 samtools variation 893256 893256 . . . alleles " T G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192469.1 samtools variation 893641 893641 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192469.1 samtools variation 893771 893771 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192469.1 samtools variation 897853 897853 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192469.1 samtools variation 899547 899547 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192469.1 samtools variation 899983 899983 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 32 ; known ; N/A GL192469.1 samtools variation 900405 900405 . . . alleles " G C"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; known ; N/A GL192469.1 samtools variation 907173 907173 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192469.1 samtools variation 911389 911389 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192469.1 samtools variation 912360 912360 . . . alleles " T G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192469.1 samtools variation 914210 914210 . . . alleles " A G"; frequencies " 0.42 0.58"; depth 50 ; known ; N/A GL192469.1 samtools variation 917716 917716 . . . alleles " A G"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; unknown ; N/A GL192469.1 samtools variation 917743 917743 . . . alleles " C T"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL192469.1 samtools variation 919353 919353 . . . alleles " T C"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192469.1 samtools variation 919526 919526 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192469.1 samtools variation 922151 922151 . . . alleles " C T"; frequencies " 0.789915966386555 0.210084033613445"; depth 119 ; unknown ; N/A GL192469.1 samtools variation 922216 922216 . . . alleles " T C"; frequencies " 0.289719626168224 0.710280373831776"; depth 107 ; known ; N/A GL192469.1 samtools variation 923516 923516 . . . alleles " T C"; frequencies " 0.648780487804878 0.351219512195122"; depth 205 ; known ; N/A GL192469.1 samtools variation 1244315 1244315 . . . alleles " G T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192469.1 samtools variation 1247674 1247674 . . . alleles " A G"; frequencies " 0.743697478991597 0.256302521008403"; depth 238 ; known ; N/A GL192469.1 samtools variation 1247965 1247965 . . . alleles " T C"; frequencies " 0.773480662983425 0.226519337016575"; depth 362 ; known ; N/A GL192469.1 samtools variation 1248083 1248083 . . . alleles " A G"; frequencies " 0.264925373134328 0.735074626865672"; depth 268 ; known ; N/A GL192469.1 samtools variation 1248662 1248662 . . . alleles " G A"; frequencies " 0.229357798165138 0.770642201834862"; depth 218 ; known ; N/A GL192469.1 samtools variation 1248830 1248830 . . . alleles " T C"; frequencies " 0.217391304347826 0.782608695652174"; depth 184 ; known ; N/A GL192469.1 samtools variation 1249314 1249314 . . . alleles " A G"; frequencies " 0.691943127962085 0.308056872037915"; depth 211 ; known ; synonymous GL192469.1 samtools variation 1249790 1249790 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192469.1 samtools variation 1250169 1250169 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192469.1 samtools variation 1251080 1251080 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; known ; N/A GL192469.1 samtools variation 1252108 1252108 . . . alleles " C T"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; known ; N/A GL192469.1 samtools variation 1253117 1253117 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 156 ; known ; N/A GL192469.1 samtools variation 1253194 1253194 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 208 ; known ; N/A GL192469.1 samtools variation 1253381 1253381 . . . alleles " G A"; frequencies " 0.315789473684211 0.684210526315789"; depth 38 ; known ; N/A GL192469.1 samtools variation 1253591 1253591 . . . alleles " G A"; frequencies " 0.783333333333333 0.216666666666667"; depth 60 ; unknown ; N/A GL192469.1 samtools variation 1253705 1253705 . . . alleles " A G"; frequencies " 0.51063829787234 0.48936170212766"; depth 47 ; unknown ; N/A GL192469.1 samtools variation 1253728 1253728 . . . alleles " G A"; frequencies " 0.46 0.54"; depth 50 ; known ; N/A GL192469.1 samtools variation 1254236 1254236 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 32 ; known ; N/A GL192469.1 samtools variation 1255467 1255467 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 95 ; unknown ; N/A GL192469.1 samtools variation 1265213 1265213 . . . alleles " A G"; frequencies " 0.788888888888889 0.211111111111111"; depth 180 ; unknown ; synonymous GL192469.1 samtools variation 1265231 1265231 . . . alleles " C T"; frequencies " 0.584158415841584 0.415841584158416"; depth 202 ; known ; synonymous GL192469.1 samtools variation 1277674 1277674 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192469.1 samtools variation 1284013 1284013 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192469.1 samtools variation 1295269 1295269 . . . alleles " T C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL192469.1 samtools variation 1298994 1298994 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192469.1 samtools variation 1302967 1302967 . . . alleles " A C"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192469.1 samtools variation 1302971 1302971 . . . alleles " C A"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192469.1 samtools variation 1303137 1303137 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192469.1 samtools variation 1304207 1304207 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192469.1 samtools variation 2429757 2429757 . . . alleles " A C"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; known ; N/A GL192469.1 samtools variation 2429972 2429972 . . . alleles " T C"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; unknown ; N/A GL192469.1 samtools variation 2429978 2429978 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; unknown ; N/A GL192469.1 samtools variation 2495071 2495071 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192469.1 samtools variation 2495402 2495402 . . . alleles " G A"; frequencies " 0.736040609137056 0.263959390862944"; depth 197 ; unknown ; synonymous GL192469.1 samtools variation 2498114 2498114 . . . alleles " G A"; frequencies " 0.765957446808511 0.234042553191489"; depth 141 ; unknown ; synonymous GL192469.1 samtools variation 2498151 2498151 . . . alleles " A G"; frequencies " 0.70873786407767 0.29126213592233"; depth 103 ; unknown ; non-synonymous GL192469.1 samtools variation 2501097 2501097 . . . alleles " C G"; frequencies " 0.326797385620915 0.673202614379085"; depth 153 ; known ; synonymous GL192469.1 samtools variation 2507069 2507069 . . . alleles " C T"; frequencies " 0.776765375854214 0.223234624145786"; depth 439 ; known ; synonymous GL192469.1 samtools variation 2524090 2524090 . . . alleles " A G"; frequencies " 0.361904761904762 0.628571428571429"; depth 105 ; known ; N/A GL192469.1 samtools variation 2524942 2524942 . . . alleles " C T"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL192469.1 samtools variation 2525095 2525095 . . . alleles " C T"; frequencies " 0.707692307692308 0.292307692307692"; depth 65 ; unknown ; N/A GL192469.1 samtools variation 2525793 2525793 . . . alleles " G C"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; known ; N/A GL192469.1 samtools variation 2525884 2525884 . . . alleles " G T"; frequencies " 0.625 0.375"; depth 32 ; known ; N/A GL192469.1 samtools variation 2525900 2525900 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; known ; N/A GL192471.1 samtools variation 30917 30917 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 130 ; known ; non-synonymous GL192471.1 samtools variation 86220 86220 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192471.1 samtools variation 87712 87712 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192471.1 samtools variation 93514 93514 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192471.1 samtools variation 343707 343707 . . . alleles " G A"; frequencies " 0.290909090909091 0.709090909090909"; depth 55 ; unknown ; N/A GL192471.1 samtools variation 343936 343936 . . . alleles " G A"; frequencies " 0.26027397260274 0.73972602739726"; depth 73 ; unknown ; N/A GL192471.1 samtools variation 343994 343994 . . . alleles " T A"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL192471.1 samtools variation 344184 344184 . . . alleles " C T"; frequencies " 0.32089552238806 0.67910447761194"; depth 134 ; unknown ; N/A GL192471.1 samtools variation 344369 344369 . . . alleles " A G"; frequencies " 0.645502645502645 0.354497354497354"; depth 189 ; unknown ; N/A GL192471.1 samtools variation 344373 344373 . . . alleles " C T"; frequencies " 0.543478260869565 0.456521739130435"; depth 184 ; unknown ; N/A GL192471.1 samtools variation 551139 551139 . . . alleles " G A"; frequencies " 0.741818181818182 0.258181818181818"; depth 275 ; known ; N/A GL192471.1 samtools variation 553176 553176 . . . alleles " G C"; frequencies " 0.771523178807947 0.228476821192053"; depth 604 ; unknown ; N/A GL192471.1 samtools variation 556811 556811 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192471.1 samtools variation 565403 565403 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192471.1 samtools variation 582365 582365 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192471.1 samtools variation 592309 592309 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192471.1 samtools variation 601408 601408 . . . alleles " T A"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL192471.1 samtools variation 655910 655910 . . . alleles " T C"; frequencies " 0.71875 0.28125"; depth 32 ; known ; N/A GL192471.1 samtools variation 655942 655942 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; known ; N/A GL192471.1 samtools variation 655977 655977 . . . alleles " C T"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; known ; N/A GL192471.1 samtools variation 656419 656419 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192471.1 samtools variation 667852 667852 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192471.1 samtools variation 670168 670168 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192471.1 samtools variation 691131 691131 . . . alleles " G A"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192471.1 samtools variation 692600 692600 . . . alleles " A G"; frequencies " 0.585526315789474 0.414473684210526"; depth 152 ; unknown ; N/A GL192471.1 samtools variation 695726 695726 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192471.1 samtools variation 697885 697885 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192471.1 samtools variation 704171 704171 . . . alleles " G C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192471.1 samtools variation 710341 710341 . . . alleles " T G"; frequencies " 0.694267515923567 0.305732484076433"; depth 157 ; unknown ; N/A GL192471.1 samtools variation 711874 711874 . . . alleles " T C"; frequencies " 0.679347826086957 0.320652173913043"; depth 184 ; unknown ; N/A GL192471.1 samtools variation 719713 719713 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192471.1 samtools variation 720100 720100 . . . alleles " T C"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; unknown ; N/A GL192471.1 samtools variation 721037 721037 . . . alleles " G A"; frequencies " 0.658536585365854 0.341463414634146"; depth 82 ; unknown ; N/A GL192471.1 samtools variation 721111 721111 . . . alleles " C T"; frequencies " 0.752941176470588 0.247058823529412"; depth 85 ; unknown ; N/A GL192471.1 samtools variation 721127 721127 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 55 ; unknown ; N/A GL192471.1 samtools variation 721372 721372 . . . alleles " A C"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL192471.1 samtools variation 721392 721392 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 48 ; unknown ; N/A GL192471.1 samtools variation 724525 724525 . . . alleles " C T"; frequencies " 0.748633879781421 0.251366120218579"; depth 183 ; unknown ; N/A GL192471.1 samtools variation 725283 725283 . . . alleles " A G"; frequencies " 0.75625 0.24375"; depth 160 ; unknown ; N/A GL192471.1 samtools variation 725316 725316 . . . alleles " A G"; frequencies " 0.667832167832168 0.332167832167832"; depth 286 ; unknown ; N/A GL192471.1 samtools variation 733301 733301 . . . alleles " C G"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL192471.1 samtools variation 750022 750022 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; synonymous GL192471.1 samtools variation 871306 871306 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192472.1 samtools variation 837542 837542 . . . alleles " G A"; frequencies " 0.710843373493976 0.289156626506024"; depth 83 ; known ; N/A GL192472.1 samtools variation 837640 837640 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 57 ; known ; N/A GL192472.1 samtools variation 1047129 1047129 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192472.1 samtools variation 1047166 1047166 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192472.1 samtools variation 1056809 1056809 . . . alleles " C T"; frequencies " 0.62953995157385 0.37046004842615"; depth 413 ; unknown ; N/A GL192472.1 samtools variation 1057726 1057726 . . . alleles " C T"; frequencies " 0.697247706422018 0.302752293577982"; depth 109 ; unknown ; N/A GL192472.1 samtools variation 1058606 1058606 . . . alleles " G A"; frequencies " 0.765822784810127 0.234177215189873"; depth 316 ; unknown ; N/A GL192472.1 samtools variation 1090389 1090389 . . . alleles " C A"; frequencies " 0.28 0.72"; depth 575 ; unknown ; non-synonymous GL192472.1 samtools variation 1568432 1568432 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192472.1 samtools variation 1568482 1568482 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192472.1 samtools variation 1571882 1571882 . . . alleles " G C"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL192472.1 samtools variation 1573886 1573886 . . . alleles " T A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192472.1 samtools variation 1574461 1574461 . . . alleles " A G"; frequencies " 0.32 0.68"; depth 25 ; known ; N/A GL192472.1 samtools variation 1707760 1707760 . . . alleles " T C"; frequencies " 0.703933747412008 0.296066252587992"; depth 483 ; unknown ; non-synonymous GL192472.1 samtools variation 1712390 1712390 . . . alleles " A T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192472.1 samtools variation 1712747 1712747 . . . alleles " G A"; frequencies " 0.748837209302326 0.251162790697674"; depth 215 ; unknown ; synonymous GL192472.1 samtools variation 1713435 1713435 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192472.1 samtools variation 1715578 1715578 . . . alleles " A G"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; unknown ; N/A GL192472.1 samtools variation 1718072 1718072 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192472.1 samtools variation 1718697 1718697 . . . alleles " C T"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192472.1 samtools variation 1721823 1721823 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192472.1 samtools variation 1722422 1722422 . . . alleles " C A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192472.1 samtools variation 1722540 1722540 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192472.1 samtools variation 1862676 1862676 . . . alleles " G A"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL192472.1 samtools variation 1863271 1863271 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; known ; N/A GL192472.1 samtools variation 1864338 1864338 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; known ; N/A GL192472.1 samtools variation 2240039 2240039 . . . alleles " A G"; frequencies " 0.32 0.68"; depth 25 ; known ; non-synonymous GL192474.1 samtools variation 421255 421255 . . . alleles " G A"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; unknown ; N/A GL192474.1 samtools variation 2042340 2042340 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192474.1 samtools variation 2047226 2047226 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192474.1 samtools variation 2047414 2047414 . . . alleles " A T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192474.1 samtools variation 2051523 2051523 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192475.1 samtools variation 35155 35155 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192475.1 samtools variation 103474 103474 . . . alleles " C T"; frequencies " 0.515723270440252 0.484276729559748"; depth 159 ; unknown ; N/A GL192475.1 samtools variation 103668 103668 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192475.1 samtools variation 105275 105275 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192475.1 samtools variation 105276 105276 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192475.1 samtools variation 105753 105753 . . . alleles " G A"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL192475.1 samtools variation 106012 106012 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192475.1 samtools variation 106397 106397 . . . alleles " G A"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; unknown ; N/A GL192475.1 samtools variation 107111 107111 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192475.1 samtools variation 107627 107627 . . . alleles " T C"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL192475.1 samtools variation 110191 110191 . . . alleles " G A"; frequencies " 0.405063291139241 0.594936708860759"; depth 158 ; unknown ; N/A GL192475.1 samtools variation 110212 110212 . . . alleles " T G"; frequencies " 0.440414507772021 0.559585492227979"; depth 193 ; unknown ; N/A GL192475.1 samtools variation 111612 111612 . . . alleles " A C"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL192475.1 samtools variation 112497 112497 . . . alleles " T C"; frequencies " 0.490196078431373 0.509803921568627"; depth 102 ; unknown ; N/A GL192475.1 samtools variation 112538 112538 . . . alleles " A G"; frequencies " 0.522522522522523 0.477477477477477"; depth 222 ; unknown ; N/A GL192475.1 samtools variation 113442 113442 . . . alleles " C T"; frequencies " 0.759615384615385 0.240384615384615"; depth 104 ; unknown ; N/A GL192475.1 samtools variation 118534 118534 . . . alleles " C A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192475.1 samtools variation 120486 120486 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; synonymous GL192475.1 samtools variation 120509 120509 . . . alleles " C T"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; non-synonymous GL192475.1 samtools variation 126997 126997 . . . alleles " T C"; frequencies " 0.795918367346939 0.204081632653061"; depth 49 ; unknown ; synonymous GL192475.1 samtools variation 127633 127633 . . . alleles " A G"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; known ; non-synonymous GL192475.1 samtools variation 165345 165345 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192475.1 samtools variation 300008 300008 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL192475.1 samtools variation 303852 303852 . . . alleles " T G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL192475.1 samtools variation 344907 344907 . . . alleles " G A"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; N/A GL192475.1 samtools variation 349476 349476 . . . alleles " T C"; frequencies " 0.475247524752475 0.524752475247525"; depth 101 ; known ; non-synonymous GL192475.1 samtools variation 359723 359723 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192475.1 samtools variation 361962 361962 . . . alleles " T C"; frequencies " 0.659090909090909 0.340909090909091"; depth 176 ; known ; non-synonymous GL192475.1 samtools variation 368162 368162 . . . alleles " C T"; frequencies " 0.286127167630058 0.713872832369942"; depth 346 ; known ; N/A GL192475.1 samtools variation 368230 368230 . . . alleles " A C"; frequencies " 0.348773841961853 0.651226158038147"; depth 367 ; known ; N/A GL192475.1 samtools variation 416718 416718 . . . alleles " C G"; frequencies " 0.365853658536585 0.634146341463415"; depth 41 ; known ; synonymous GL192475.1 samtools variation 431685 431685 . . . alleles " G A"; frequencies " 0.741573033707865 0.258426966292135"; depth 89 ; known ; synonymous GL192475.1 samtools variation 447891 447891 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; N/A GL192475.1 samtools variation 449015 449015 . . . alleles " G A"; frequencies " 0.68 0.32"; depth 50 ; unknown ; N/A GL192475.1 samtools variation 450185 450185 . . . alleles " C G"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; known ; N/A GL192475.1 samtools variation 450192 450192 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 32 ; known ; N/A GL192475.1 samtools variation 450244 450244 . . . alleles " A C"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; known ; N/A GL192475.1 samtools variation 450447 450447 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192475.1 samtools variation 450629 450629 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 28 ; known ; N/A GL192475.1 samtools variation 450875 450875 . . . alleles " C T"; frequencies " 0.30188679245283 0.69811320754717"; depth 106 ; known ; N/A GL192475.1 samtools variation 451495 451495 . . . alleles " G A"; frequencies " 0.737704918032787 0.262295081967213"; depth 61 ; known ; N/A GL192475.1 samtools variation 451803 451803 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 51 ; known ; N/A GL192475.1 samtools variation 452037 452037 . . . alleles " A T"; frequencies " 0.607843137254902 0.392156862745098"; depth 51 ; unknown ; N/A GL192475.1 samtools variation 501195 501195 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; known ; N/A GL192475.1 samtools variation 501545 501545 . . . alleles " G T"; frequencies " 0.459459459459459 0.540540540540541"; depth 37 ; unknown ; N/A GL192475.1 samtools variation 698220 698220 . . . alleles " G A"; frequencies " 0.325 0.675"; depth 80 ; known ; synonymous GL192475.1 samtools variation 741053 741053 . . . alleles " C T"; frequencies " 0.27 0.73"; depth 100 ; known ; N/A GL192475.1 samtools variation 1382376 1382376 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL192475.1 samtools variation 1445648 1445648 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 70 ; unknown ; N/A GL192475.1 samtools variation 1447085 1447085 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 30 ; known ; N/A GL192475.1 samtools variation 1447552 1447552 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 45 ; known ; N/A GL192475.1 samtools variation 1447618 1447618 . . . alleles " C A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192475.1 samtools variation 1448299 1448299 . . . alleles " T C"; frequencies " 0.452830188679245 0.547169811320755"; depth 53 ; known ; N/A GL192475.1 samtools variation 1448396 1448396 . . . alleles " G C"; frequencies " 0.777777777777778 0.222222222222222"; depth 99 ; unknown ; N/A GL192475.1 samtools variation 1714043 1714043 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192475.1 samtools variation 1754894 1754894 . . . alleles " G A"; frequencies " 0.782312925170068 0.217687074829932"; depth 147 ; unknown ; non-synonymous GL192475.1 samtools variation 1757598 1757598 . . . alleles " G A"; frequencies " 0.741176470588235 0.258823529411765"; depth 85 ; unknown ; N/A GL192475.1 samtools variation 1757612 1757612 . . . alleles " G C"; frequencies " 0.516483516483517 0.483516483516484"; depth 91 ; unknown ; N/A GL192475.1 samtools variation 1811724 1811724 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192475.1 samtools variation 2008317 2008317 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192475.1 samtools variation 2025733 2025733 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192475.1 samtools variation 2029956 2029956 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192475.1 samtools variation 2038907 2038907 . . . alleles " T C"; frequencies " 0.494623655913978 0.505376344086022"; depth 93 ; known ; synonymous GL192475.1 samtools variation 2051931 2051931 . . . alleles " T G"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL192475.1 samtools variation 2051965 2051965 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192475.1 samtools variation 2053616 2053616 . . . alleles " T A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192475.1 samtools variation 2054726 2054726 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192475.1 samtools variation 2055078 2055078 . . . alleles " C G"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; known ; non-synonymous GL192475.1 samtools variation 2060368 2060368 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL192475.1 samtools variation 2060394 2060394 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192475.1 samtools variation 2066491 2066491 . . . alleles " G A"; frequencies " 0.69811320754717 0.30188679245283"; depth 53 ; known ; N/A GL192475.1 samtools variation 2067008 2067008 . . . alleles " T C"; frequencies " 0.651515151515151 0.348484848484849"; depth 132 ; known ; N/A GL192475.1 samtools variation 2067569 2067569 . . . alleles " C T"; frequencies " 0.245098039215686 0.754901960784314"; depth 102 ; known ; N/A GL192475.1 samtools variation 2234110 2234110 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; synonymous GL192475.1 samtools variation 2261374 2261374 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; synonymous GL192475.1 samtools variation 2276331 2276331 . . . alleles " C G"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; non-synonymous GL192475.1 samtools variation 2286696 2286696 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192475.1 samtools variation 2421651 2421651 . . . alleles " G A"; frequencies " 0.709677419354839 0.290322580645161"; depth 62 ; known ; non-synonymous GL192475.1 samtools variation 2435935 2435935 . . . alleles " C T"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192475.1 samtools variation 2436149 2436149 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL192475.1 samtools variation 2436767 2436767 . . . alleles " G C"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; known ; N/A GL192475.1 samtools variation 2472893 2472893 . . . alleles " T C"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL192475.1 samtools variation 2476522 2476522 . . . alleles " C A"; frequencies " 0.411111111111111 0.588888888888889"; depth 180 ; unknown ; non-synonymous GL192475.1 samtools variation 2483299 2483299 . . . alleles " G A"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192475.1 samtools variation 2485833 2485833 . . . alleles " G C"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL192475.1 samtools variation 2486951 2486951 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192476.1 samtools variation 30563 30563 . . . alleles " C T"; frequencies " 0.688760806916426 0.311239193083574"; depth 347 ; unknown ; N/A GL192476.1 samtools variation 31963 31963 . . . alleles " T C"; frequencies " 0.417355371900826 0.582644628099174"; depth 242 ; unknown ; N/A GL192476.1 samtools variation 32000 32000 . . . alleles " G A"; frequencies " 0.540816326530612 0.459183673469388"; depth 196 ; unknown ; N/A GL192476.1 samtools variation 32035 32035 . . . alleles " A G"; frequencies " 0.30939226519337 0.69060773480663"; depth 181 ; known ; N/A GL192476.1 samtools variation 32080 32080 . . . alleles " G A"; frequencies " 0.540540540540541 0.459459459459459"; depth 222 ; unknown ; N/A GL192476.1 samtools variation 35906 35906 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192476.1 samtools variation 128538 128538 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 63 ; known ; N/A GL192476.1 samtools variation 129188 129188 . . . alleles " T C"; frequencies " 0.491803278688525 0.508196721311475"; depth 183 ; known ; N/A GL192476.1 samtools variation 129236 129236 . . . alleles " A T"; frequencies " 0.507352941176471 0.485294117647059"; depth 136 ; known ; N/A GL192476.1 samtools variation 129503 129503 . . . alleles " C G"; frequencies " 0.39873417721519 0.60126582278481"; depth 316 ; unknown ; synonymous GL192476.1 samtools variation 554183 554183 . . . alleles " T C"; frequencies " 0.672413793103448 0.327586206896552"; depth 58 ; known ; N/A GL192476.1 samtools variation 554480 554480 . . . alleles " A G"; frequencies " 0.673469387755102 0.326530612244898"; depth 49 ; unknown ; N/A GL192476.1 samtools variation 554550 554550 . . . alleles " G A"; frequencies " 0.735632183908046 0.264367816091954"; depth 87 ; unknown ; N/A GL192476.1 samtools variation 555501 555501 . . . alleles " G A"; frequencies " 0.511904761904762 0.488095238095238"; depth 84 ; unknown ; synonymous GL192476.1 samtools variation 560398 560398 . . . alleles " G A"; frequencies " 0.464285714285714 0.535714285714286"; depth 84 ; known ; N/A GL192476.1 samtools variation 560423 560423 . . . alleles " C A"; frequencies " 0.716417910447761 0.283582089552239"; depth 134 ; unknown ; N/A GL192476.1 samtools variation 562203 562203 . . . alleles " G T"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192476.1 samtools variation 562837 562837 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192476.1 samtools variation 562902 562902 . . . alleles " G T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192476.1 samtools variation 563129 563129 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL192476.1 samtools variation 565254 565254 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL192476.1 samtools variation 565896 565896 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192476.1 samtools variation 566298 566298 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192476.1 samtools variation 566438 566438 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192476.1 samtools variation 567008 567008 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL192476.1 samtools variation 570352 570352 . . . alleles " C A"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL192476.1 samtools variation 570600 570600 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192476.1 samtools variation 582404 582404 . . . alleles " T C"; frequencies " 0.256410256410256 0.743589743589744"; depth 39 ; known ; N/A GL192476.1 samtools variation 582695 582695 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192476.1 samtools variation 582718 582718 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192476.1 samtools variation 583971 583971 . . . alleles " A C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192476.1 samtools variation 585364 585364 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL192476.1 samtools variation 586105 586105 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; N/A GL192476.1 samtools variation 586848 586848 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL192476.1 samtools variation 587110 587110 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192476.1 samtools variation 597427 597427 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192476.1 samtools variation 597438 597438 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192476.1 samtools variation 603087 603087 . . . alleles " C A"; frequencies " 0.22093023255814 0.779069767441861"; depth 86 ; unknown ; N/A GL192476.1 samtools variation 603453 603453 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192476.1 samtools variation 603856 603856 . . . alleles " A C"; frequencies " 0.254901960784314 0.745098039215686"; depth 51 ; unknown ; N/A GL192476.1 samtools variation 651352 651352 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192476.1 samtools variation 655954 655954 . . . alleles " A G"; frequencies " 0.258152173913043 0.741847826086957"; depth 368 ; known ; synonymous GL192476.1 samtools variation 663382 663382 . . . alleles " T C"; frequencies " 0.787172011661808 0.212827988338192"; depth 343 ; unknown ; N/A GL192476.1 samtools variation 664758 664758 . . . alleles " C G"; frequencies " 0.706172839506173 0.293827160493827"; depth 405 ; unknown ; non-synonymous GL192476.1 samtools variation 1176978 1176978 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192476.1 samtools variation 1401323 1401323 . . . alleles " A T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192476.1 samtools variation 1510500 1510500 . . . alleles " A G"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; unknown ; N/A GL192476.1 samtools variation 1513261 1513261 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192476.1 samtools variation 1513422 1513422 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192476.1 samtools variation 1517332 1517332 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192476.1 samtools variation 1530959 1530959 . . . alleles " G A"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL192476.1 samtools variation 1535226 1535226 . . . alleles " A G"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL192476.1 samtools variation 1571460 1571460 . . . alleles " A C"; frequencies " 0.385714285714286 0.614285714285714"; depth 70 ; unknown ; N/A GL192476.1 samtools variation 1571526 1571526 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL192476.1 samtools variation 1573730 1573730 . . . alleles " T G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192476.1 samtools variation 1573889 1573889 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192476.1 samtools variation 1576356 1576356 . . . alleles " C T"; frequencies " 0.773584905660377 0.226415094339623"; depth 53 ; unknown ; N/A GL192476.1 samtools variation 1579478 1579478 . . . alleles " G A"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192476.1 samtools variation 1580692 1580692 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192476.1 samtools variation 1580756 1580756 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192476.1 samtools variation 1583582 1583582 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192476.1 samtools variation 1583655 1583655 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192476.1 samtools variation 1586980 1586980 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192476.1 samtools variation 1592703 1592703 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 88 ; known ; N/A GL192476.1 samtools variation 1593453 1593453 . . . alleles " C T"; frequencies " 0.554347826086957 0.445652173913043"; depth 92 ; unknown ; N/A GL192476.1 samtools variation 1594025 1594025 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 75 ; unknown ; N/A GL192476.1 samtools variation 1594778 1594778 . . . alleles " T G"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; unknown ; N/A GL192476.1 samtools variation 1594866 1594866 . . . alleles " G T"; frequencies " 0.467532467532468 0.532467532467532"; depth 77 ; known ; N/A GL192476.1 samtools variation 1594904 1594904 . . . alleles " A G"; frequencies " 0.546296296296296 0.453703703703704"; depth 108 ; known ; N/A GL192476.1 samtools variation 1595197 1595197 . . . alleles " G A"; frequencies " 0.382978723404255 0.617021276595745"; depth 94 ; unknown ; N/A GL192476.1 samtools variation 1595685 1595685 . . . alleles " A G"; frequencies " 0.541666666666667 0.458333333333333"; depth 72 ; unknown ; N/A GL192476.1 samtools variation 1596453 1596453 . . . alleles " A C"; frequencies " 0.405940594059406 0.594059405940594"; depth 101 ; unknown ; N/A GL192476.1 samtools variation 1596614 1596614 . . . alleles " G T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192476.1 samtools variation 1596866 1596866 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192476.1 samtools variation 1597289 1597289 . . . alleles " T G"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; unknown ; N/A GL192476.1 samtools variation 1597544 1597544 . . . alleles " A G"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; unknown ; N/A GL192476.1 samtools variation 1597741 1597741 . . . alleles " C T"; frequencies " 0.616438356164384 0.383561643835616"; depth 73 ; unknown ; N/A GL192476.1 samtools variation 1598375 1598375 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192476.1 samtools variation 1598759 1598759 . . . alleles " G C"; frequencies " 0.551181102362205 0.448818897637795"; depth 127 ; unknown ; N/A GL192476.1 samtools variation 1598809 1598809 . . . alleles " C T"; frequencies " 0.516666666666667 0.483333333333333"; depth 180 ; unknown ; N/A GL192476.1 samtools variation 1598958 1598958 . . . alleles " A G"; frequencies " 0.550802139037433 0.449197860962567"; depth 187 ; unknown ; N/A GL192476.1 samtools variation 1599177 1599177 . . . alleles " C T"; frequencies " 0.586046511627907 0.413953488372093"; depth 215 ; unknown ; N/A GL192476.1 samtools variation 1599309 1599309 . . . alleles " T C"; frequencies " 0.542056074766355 0.457943925233645"; depth 107 ; unknown ; N/A GL192476.1 samtools variation 1599335 1599335 . . . alleles " G T"; frequencies " 0.575 0.425"; depth 80 ; unknown ; N/A GL192476.1 samtools variation 1599554 1599554 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192476.1 samtools variation 1600737 1600737 . . . alleles " T C"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192476.1 samtools variation 1601339 1601339 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192476.1 samtools variation 1601544 1601544 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192476.1 samtools variation 1605471 1605471 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192476.1 samtools variation 1621700 1621700 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 30 ; known ; N/A GL192476.1 samtools variation 1621906 1621906 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192476.1 samtools variation 1656683 1656683 . . . alleles " A G"; frequencies " 0.686274509803922 0.313725490196078"; depth 51 ; known ; N/A GL192476.1 samtools variation 1656993 1656993 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL192476.1 samtools variation 1657002 1657002 . . . alleles " C T"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL192476.1 samtools variation 1657601 1657601 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192476.1 samtools variation 1657871 1657871 . . . alleles " A G"; frequencies " 0.755905511811024 0.244094488188976"; depth 127 ; unknown ; N/A GL192476.1 samtools variation 1657912 1657912 . . . alleles " G T"; frequencies " 0.685314685314685 0.314685314685315"; depth 143 ; unknown ; N/A GL192476.1 samtools variation 1657973 1657973 . . . alleles " T C"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL192476.1 samtools variation 1658092 1658092 . . . alleles " T G"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; N/A GL192476.1 samtools variation 1658419 1658419 . . . alleles " A G"; frequencies " 0.524590163934426 0.475409836065574"; depth 61 ; unknown ; N/A GL192476.1 samtools variation 1658509 1658509 . . . alleles " G C"; frequencies " 0.555555555555556 0.444444444444444"; depth 135 ; unknown ; N/A GL192476.1 samtools variation 1658683 1658683 . . . alleles " A T"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL192476.1 samtools variation 1660819 1660819 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192476.1 samtools variation 1660873 1660873 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192476.1 samtools variation 1661104 1661104 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192476.1 samtools variation 1662005 1662005 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192476.1 samtools variation 1665053 1665053 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; known ; N/A GL192476.1 samtools variation 1668419 1668419 . . . alleles " C A"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192476.1 samtools variation 1672142 1672142 . . . alleles " G T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192476.1 samtools variation 1677391 1677391 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL192476.1 samtools variation 1680035 1680035 . . . alleles " G A"; frequencies " 0.602409638554217 0.397590361445783"; depth 83 ; unknown ; N/A GL192476.1 samtools variation 1680275 1680275 . . . alleles " T C"; frequencies " 0.604166666666667 0.395833333333333"; depth 96 ; unknown ; N/A GL192476.1 samtools variation 1680900 1680900 . . . alleles " T G"; frequencies " 0.647058823529412 0.352941176470588"; depth 51 ; unknown ; N/A GL192476.1 samtools variation 1680959 1680959 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192476.1 samtools variation 1681059 1681059 . . . alleles " C T"; frequencies " 0.56 0.44"; depth 75 ; unknown ; N/A GL192476.1 samtools variation 1681111 1681111 . . . alleles " C T"; frequencies " 0.662162162162162 0.337837837837838"; depth 74 ; unknown ; N/A GL192476.1 samtools variation 1683192 1683192 . . . alleles " G A"; frequencies " 0.627737226277372 0.372262773722628"; depth 137 ; unknown ; N/A GL192476.1 samtools variation 1683801 1683801 . . . alleles " G A"; frequencies " 0.649253731343284 0.350746268656716"; depth 134 ; unknown ; N/A GL192476.1 samtools variation 1684056 1684056 . . . alleles " A G"; frequencies " 0.598290598290598 0.401709401709402"; depth 117 ; unknown ; N/A GL192476.1 samtools variation 1686238 1686238 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 76 ; unknown ; N/A GL192476.1 samtools variation 1686588 1686588 . . . alleles " G T"; frequencies " 0.612244897959184 0.387755102040816"; depth 49 ; unknown ; N/A GL192476.1 samtools variation 1690428 1690428 . . . alleles " T G"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192476.1 samtools variation 1690843 1690843 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 88 ; unknown ; N/A GL192476.1 samtools variation 1692107 1692107 . . . alleles " G A"; frequencies " 0.784615384615385 0.215384615384615"; depth 585 ; unknown ; N/A GL192476.1 samtools variation 1694205 1694205 . . . alleles " T C"; frequencies " 0.773156899810964 0.226843100189036"; depth 529 ; unknown ; N/A GL192476.1 samtools variation 1696676 1696676 . . . alleles " A C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192476.1 samtools variation 1806086 1806086 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192476.1 samtools variation 1806389 1806389 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192476.1 samtools variation 1998686 1998686 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192476.1 samtools variation 1999365 1999365 . . . alleles " G A"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL192476.1 samtools variation 1999451 1999451 . . . alleles " T A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192476.1 samtools variation 1999913 1999913 . . . alleles " C T"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192476.1 samtools variation 2000063 2000063 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192476.1 samtools variation 2000695 2000695 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192476.1 samtools variation 2001314 2001314 . . . alleles " C T"; frequencies " 0.589473684210526 0.410526315789474"; depth 95 ; known ; N/A GL192476.1 samtools variation 2001631 2001631 . . . alleles " A G"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192476.1 samtools variation 2001707 2001707 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL192476.1 samtools variation 2270327 2270327 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192476.1 samtools variation 2272876 2272876 . . . alleles " T C"; frequencies " 0.67032967032967 0.32967032967033"; depth 91 ; known ; N/A GL192476.1 samtools variation 2273210 2273210 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192476.1 samtools variation 2274930 2274930 . . . alleles " T G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192477.1 samtools variation 2172939 2172939 . . . alleles " C T"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192477.1 samtools variation 2173180 2173180 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; synonymous GL192477.1 samtools variation 2174146 2174146 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; unknown ; synonymous GL192478.1 samtools variation 893905 893905 . . . alleles " G A"; frequencies " 0.673366834170854 0.326633165829146"; depth 199 ; known ; N/A GL192478.1 samtools variation 982360 982360 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192478.1 samtools variation 1780527 1780527 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 40 ; known ; synonymous GL192478.1 samtools variation 1782792 1782792 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192478.1 samtools variation 1804354 1804354 . . . alleles " A G"; frequencies " 0.748148148148148 0.251851851851852"; depth 135 ; unknown ; synonymous GL192478.1 samtools variation 2292729 2292729 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; N/A GL192478.1 samtools variation 2332221 2332221 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 60 ; known ; synonymous GL192479.1 samtools variation 34277 34277 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192479.1 samtools variation 34897 34897 . . . alleles " G A"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL192479.1 samtools variation 37290 37290 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 36 ; unknown ; N/A GL192479.1 samtools variation 84465 84465 . . . alleles " A G"; frequencies " 0.206896551724138 0.793103448275862"; depth 58 ; known ; synonymous GL192479.1 samtools variation 84676 84676 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192479.1 samtools variation 142252 142252 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192479.1 samtools variation 205672 205672 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192479.1 samtools variation 319052 319052 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192479.1 samtools variation 393563 393563 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192479.1 samtools variation 398545 398545 . . . alleles " A C"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL192479.1 samtools variation 403542 403542 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 56 ; unknown ; N/A GL192479.1 samtools variation 407096 407096 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 36 ; known ; N/A GL192479.1 samtools variation 407468 407468 . . . alleles " A G"; frequencies " 0.314285714285714 0.685714285714286"; depth 35 ; known ; N/A GL192479.1 samtools variation 408456 408456 . . . alleles " A T"; frequencies " 0.297169811320755 0.702830188679245"; depth 212 ; known ; N/A GL192479.1 samtools variation 693723 693723 . . . alleles " G A"; frequencies " 0.569230769230769 0.430769230769231"; depth 65 ; unknown ; synonymous GL192479.1 samtools variation 777116 777116 . . . alleles " G A"; frequencies " 0.618181818181818 0.381818181818182"; depth 55 ; unknown ; N/A GL192479.1 samtools variation 796807 796807 . . . alleles " T C"; frequencies " 0.607142857142857 0.392857142857143"; depth 84 ; unknown ; synonymous GL192479.1 samtools variation 890511 890511 . . . alleles " C T"; frequencies " 0.740740740740741 0.259259259259259"; depth 54 ; unknown ; N/A GL192479.1 samtools variation 890764 890764 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192479.1 samtools variation 892212 892212 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 32 ; unknown ; N/A GL192479.1 samtools variation 892560 892560 . . . alleles " C A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192479.1 samtools variation 894069 894069 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 92 ; known ; N/A GL192479.1 samtools variation 904320 904320 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL192479.1 samtools variation 913218 913218 . . . alleles " G A"; frequencies " 0.743243243243243 0.256756756756757"; depth 74 ; unknown ; synonymous GL192479.1 samtools variation 947015 947015 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 32 ; known ; synonymous GL192479.1 samtools variation 997515 997515 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 56 ; unknown ; N/A GL192479.1 samtools variation 1059888 1059888 . . . alleles " A G"; frequencies " 0.462962962962963 0.537037037037037"; depth 54 ; known ; N/A GL192479.1 samtools variation 1067303 1067303 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192479.1 samtools variation 1082835 1082835 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 46 ; unknown ; non-synonymous GL192479.1 samtools variation 1128448 1128448 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192479.1 samtools variation 1128661 1128661 . . . alleles " G A"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; synonymous GL192479.1 samtools variation 1133919 1133919 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; synonymous GL192479.1 samtools variation 1138074 1138074 . . . alleles " T C"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL192479.1 samtools variation 1138310 1138310 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192479.1 samtools variation 1141658 1141658 . . . alleles " G A"; frequencies " 0.596491228070175 0.403508771929825"; depth 57 ; unknown ; N/A GL192479.1 samtools variation 1144557 1144557 . . . alleles " G A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192479.1 samtools variation 1144583 1144583 . . . alleles " T C"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; unknown ; N/A GL192479.1 samtools variation 1176911 1176911 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192479.1 samtools variation 1229128 1229128 . . . alleles " G A"; frequencies " 0.48780487804878 0.51219512195122"; depth 82 ; known ; N/A GL192479.1 samtools variation 1230198 1230198 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; known ; N/A GL192479.1 samtools variation 1230244 1230244 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192479.1 samtools variation 1236407 1236407 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; N/A GL192479.1 samtools variation 1241286 1241286 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192479.1 samtools variation 1241353 1241353 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192479.1 samtools variation 1245186 1245186 . . . alleles " C A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192479.1 samtools variation 1256231 1256231 . . . alleles " C T"; frequencies " 0.233644859813084 0.766355140186916"; depth 214 ; known ; non-synonymous GL192479.1 samtools variation 1351810 1351810 . . . alleles " T A"; frequencies " 0.76 0.24"; depth 150 ; unknown ; N/A GL192479.1 samtools variation 1510921 1510921 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192479.1 samtools variation 1511431 1511431 . . . alleles " T A"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL192479.1 samtools variation 1513547 1513547 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; synonymous GL192479.1 samtools variation 1516915 1516915 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; non-synonymous GL192479.1 samtools variation 1517246 1517246 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192479.1 samtools variation 1520016 1520016 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; non-synonymous GL192479.1 samtools variation 1530587 1530587 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; synonymous GL192479.1 samtools variation 1535975 1535975 . . . alleles " A G"; frequencies " 0.26 0.74"; depth 50 ; known ; non-synonymous GL192479.1 samtools variation 1536043 1536043 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 55 ; unknown ; synonymous GL192479.1 samtools variation 1537355 1537355 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192479.1 samtools variation 1537477 1537477 . . . alleles " T A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192479.1 samtools variation 1537591 1537591 . . . alleles " C T"; frequencies " 0.425 0.575"; depth 40 ; known ; N/A GL192479.1 samtools variation 1542761 1542761 . . . alleles " G A"; frequencies " 0.747368421052632 0.252631578947368"; depth 95 ; unknown ; N/A GL192479.1 samtools variation 1566792 1566792 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 136 ; unknown ; non-synonymous GL192479.1 samtools variation 1619966 1619966 . . . alleles " C A"; frequencies " 0.669753086419753 0.330246913580247"; depth 648 ; unknown ; non-synonymous GL192479.1 samtools variation 1627518 1627518 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL192479.1 samtools variation 1652518 1652518 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192479.1 samtools variation 1678148 1678148 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192479.1 samtools variation 1679535 1679535 . . . alleles " T G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192479.1 samtools variation 1679539 1679539 . . . alleles " C A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192479.1 samtools variation 1941927 1941927 . . . alleles " A T"; frequencies " 0.524079320113314 0.475920679886686"; depth 353 ; unknown ; N/A GL192479.1 samtools variation 1942523 1942523 . . . alleles " G A"; frequencies " 0.490825688073394 0.509174311926605"; depth 218 ; unknown ; N/A GL192479.1 samtools variation 1944678 1944678 . . . alleles " C T"; frequencies " 0.574468085106383 0.425531914893617"; depth 47 ; unknown ; N/A GL192479.1 samtools variation 1945890 1945890 . . . alleles " T C"; frequencies " 0.37719298245614 0.62280701754386"; depth 114 ; unknown ; N/A GL192479.1 samtools variation 2093783 2093783 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL192479.1 samtools variation 2102716 2102716 . . . alleles " A G"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192479.1 samtools variation 2297148 2297148 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192479.1 samtools variation 2297562 2297562 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192479.1 samtools variation 2297570 2297570 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192479.1 samtools variation 2348547 2348547 . . . alleles " C T"; frequencies " 0.683431952662722 0.316568047337278"; depth 338 ; unknown ; N/A GL192479.1 samtools variation 2395551 2395551 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192479.1 samtools variation 2399639 2399639 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL192479.1 samtools variation 2423905 2423905 . . . alleles " C T"; frequencies " 0.721115537848606 0.278884462151394"; depth 251 ; known ; N/A GL192479.1 samtools variation 2438265 2438265 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192479.1 samtools variation 2438819 2438819 . . . alleles " C T"; frequencies " 0.717647058823529 0.282352941176471"; depth 170 ; unknown ; synonymous GL192479.1 samtools variation 2448644 2448644 . . . alleles " T C"; frequencies " 0.708029197080292 0.291970802919708"; depth 137 ; unknown ; N/A GL192480.1 samtools variation 55556 55556 . . . alleles " A C"; frequencies " 0.543859649122807 0.456140350877193"; depth 114 ; known ; N/A GL192480.1 samtools variation 55597 55597 . . . alleles " C T"; frequencies " 0.414814814814815 0.585185185185185"; depth 135 ; known ; N/A GL192480.1 samtools variation 57294 57294 . . . alleles " C A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192480.1 samtools variation 115323 115323 . . . alleles " A G"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; known ; synonymous GL192480.1 samtools variation 119654 119654 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192480.1 samtools variation 1252666 1252666 . . . alleles " T C"; frequencies " 0.601156069364162 0.398843930635838"; depth 173 ; unknown ; N/A GL192480.1 samtools variation 1388737 1388737 . . . alleles " T C"; frequencies " 0.34047619047619 0.65952380952381"; depth 420 ; known ; non-synonymous GL192481.1 samtools variation 1033076 1033076 . . . alleles " G A"; frequencies " 0.394366197183099 0.605633802816901"; depth 71 ; known ; non-synonymous GL192481.1 samtools variation 1034418 1034418 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192481.1 samtools variation 1039636 1039636 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192481.1 samtools variation 1054177 1054177 . . . alleles " T C"; frequencies " 0.796992481203007 0.203007518796992"; depth 133 ; unknown ; synonymous GL192481.1 samtools variation 1158343 1158343 . . . alleles " G T"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192482.1 samtools variation 409328 409328 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 24 ; known ; N/A GL192482.1 samtools variation 445109 445109 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; synonymous GL192482.1 samtools variation 463147 463147 . . . alleles " G A"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192482.1 samtools variation 476838 476838 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL192482.1 samtools variation 477425 477425 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192482.1 samtools variation 493456 493456 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192482.1 samtools variation 494492 494492 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192482.1 samtools variation 630638 630638 . . . alleles " C A"; frequencies " 0.406976744186047 0.593023255813954"; depth 86 ; known ; non-synonymous GL192483.1 samtools variation 1143018 1143018 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192483.1 samtools variation 1146786 1146786 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192483.1 samtools variation 1146825 1146825 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192483.1 samtools variation 1170321 1170321 . . . alleles " C A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192483.1 samtools variation 1187906 1187906 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192483.1 samtools variation 1200503 1200503 . . . alleles " C T"; frequencies " 0.776223776223776 0.223776223776224"; depth 286 ; unknown ; synonymous GL192483.1 samtools variation 1201419 1201419 . . . alleles " G A"; frequencies " 0.75886524822695 0.24113475177305"; depth 141 ; unknown ; synonymous GL192483.1 samtools variation 1203874 1203874 . . . alleles " C T"; frequencies " 0.74390243902439 0.25609756097561"; depth 82 ; unknown ; N/A GL192483.1 samtools variation 1368976 1368976 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192483.1 samtools variation 1401713 1401713 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192483.1 samtools variation 1463879 1463879 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192483.1 samtools variation 1498041 1498041 . . . alleles " G A"; frequencies " 0.766355140186916 0.233644859813084"; depth 107 ; known ; synonymous GL192483.1 samtools variation 1498059 1498059 . . . alleles " G A"; frequencies " 0.771653543307087 0.228346456692913"; depth 127 ; known ; synonymous GL192483.1 samtools variation 1498071 1498071 . . . alleles " C T"; frequencies " 0.697986577181208 0.302013422818792"; depth 149 ; unknown ; synonymous GL192483.1 samtools variation 1500092 1500092 . . . alleles " C T"; frequencies " 0.655737704918033 0.344262295081967"; depth 61 ; unknown ; synonymous GL192483.1 samtools variation 1500142 1500142 . . . alleles " G A"; frequencies " 0.705128205128205 0.294871794871795"; depth 78 ; unknown ; synonymous GL192483.1 samtools variation 1502382 1502382 . . . alleles " A G"; frequencies " 0.672131147540984 0.327868852459016"; depth 122 ; known ; synonymous GL192483.1 samtools variation 1512285 1512285 . . . alleles " G C"; frequencies " 0.767605633802817 0.232394366197183"; depth 142 ; unknown ; non-synonymous GL192483.1 samtools variation 1516663 1516663 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 44 ; known ; N/A GL192483.1 samtools variation 1576652 1576652 . . . alleles " G A"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; N/A GL192483.1 samtools variation 1576780 1576780 . . . alleles " T G"; frequencies " 0.486486486486487 0.513513513513513"; depth 37 ; known ; N/A GL192483.1 samtools variation 1577337 1577337 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192483.1 samtools variation 1604803 1604803 . . . alleles " G A"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; synonymous GL192483.1 samtools variation 1625788 1625788 . . . alleles " G A"; frequencies " 0.232638888888889 0.763888888888889"; depth 288 ; known ; N/A GL192483.1 samtools variation 1677942 1677942 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192483.1 samtools variation 1690396 1690396 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 76 ; unknown ; N/A GL192483.1 samtools variation 1691648 1691648 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 46 ; unknown ; N/A GL192483.1 samtools variation 1761002 1761002 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192483.1 samtools variation 1769657 1769657 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192483.1 samtools variation 1919415 1919415 . . . alleles " A G"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192483.1 samtools variation 1976812 1976812 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; non-synonymous GL192483.1 samtools variation 1978824 1978824 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; unknown ; N/A GL192483.1 samtools variation 1980403 1980403 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL192483.1 samtools variation 1980444 1980444 . . . alleles " C T"; frequencies " 0.744186046511628 0.255813953488372"; depth 43 ; unknown ; N/A GL192483.1 samtools variation 1982827 1982827 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192483.1 samtools variation 2024481 2024481 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192483.1 samtools variation 2024867 2024867 . . . alleles " A G"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192483.1 samtools variation 2024992 2024992 . . . alleles " A T"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; known ; N/A GL192483.1 samtools variation 2026235 2026235 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192483.1 samtools variation 2036605 2036605 . . . alleles " T A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; non-synonymous GL192483.1 samtools variation 2037250 2037250 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; synonymous GL192483.1 samtools variation 2038736 2038736 . . . alleles " T G"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL192483.1 samtools variation 2039117 2039117 . . . alleles " T A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192483.1 samtools variation 2091473 2091473 . . . alleles " T C"; frequencies " 0.739837398373984 0.260162601626016"; depth 123 ; unknown ; synonymous GL192483.1 samtools variation 2209261 2209261 . . . alleles " T C"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192483.1 samtools variation 2215019 2215019 . . . alleles " T C"; frequencies " 0.652631578947368 0.347368421052632"; depth 380 ; unknown ; non-synonymous GL192483.1 samtools variation 2225950 2225950 . . . alleles " T C"; frequencies " 0.778135048231511 0.221864951768489"; depth 311 ; unknown ; N/A GL192483.1 samtools variation 2230968 2230968 . . . alleles " C T"; frequencies " 0.780141843971631 0.219858156028369"; depth 564 ; unknown ; N/A GL192483.1 samtools variation 2234917 2234917 . . . alleles " C T"; frequencies " 0.665961945031712 0.334038054968288"; depth 473 ; unknown ; N/A GL192483.1 samtools variation 2237956 2237956 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 85 ; known ; N/A GL192483.1 samtools variation 2238090 2238090 . . . alleles " G A"; frequencies " 0.701492537313433 0.298507462686567"; depth 67 ; unknown ; N/A GL192483.1 samtools variation 2289328 2289328 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192483.1 samtools variation 2298268 2298268 . . . alleles " C T"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL192483.1 samtools variation 2300444 2300444 . . . alleles " A G"; frequencies " 0.63395225464191 0.36604774535809"; depth 1131 ; unknown ; N/A GL192483.1 samtools variation 2300642 2300642 . . . alleles " A G"; frequencies " 0.662698412698413 0.337301587301587"; depth 504 ; unknown ; non-synonymous GL192483.1 samtools variation 2301577 2301577 . . . alleles " A G"; frequencies " 0.711111111111111 0.288888888888889"; depth 450 ; unknown ; N/A GL192484.1 samtools variation 794616 794616 . . . alleles " T A"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192484.1 samtools variation 902907 902907 . . . alleles " G A"; frequencies " 0.351351351351351 0.648648648648649"; depth 37 ; known ; N/A GL192484.1 samtools variation 904720 904720 . . . alleles " A G"; frequencies " 0.626168224299065 0.373831775700935"; depth 107 ; known ; N/A GL192484.1 samtools variation 913117 913117 . . . alleles " G T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192484.1 samtools variation 917494 917494 . . . alleles " G C"; frequencies " 0.487179487179487 0.512820512820513"; depth 39 ; unknown ; N/A GL192484.1 samtools variation 922080 922080 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192484.1 samtools variation 922642 922642 . . . alleles " C G"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; unknown ; N/A GL192484.1 samtools variation 923923 923923 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192484.1 samtools variation 925439 925439 . . . alleles " T A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192484.1 samtools variation 954725 954725 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 32 ; known ; N/A GL192484.1 samtools variation 988454 988454 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192484.1 samtools variation 999578 999578 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192484.1 samtools variation 1008984 1008984 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192484.1 samtools variation 1009490 1009490 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; known ; N/A GL192484.1 samtools variation 1012558 1012558 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192484.1 samtools variation 1023486 1023486 . . . alleles " T C"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL192484.1 samtools variation 1023676 1023676 . . . alleles " G A"; frequencies " 0.346153846153846 0.653846153846154"; depth 52 ; unknown ; N/A GL192484.1 samtools variation 1026978 1026978 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192484.1 samtools variation 1027103 1027103 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192484.1 samtools variation 1027201 1027201 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192484.1 samtools variation 1030427 1030427 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192484.1 samtools variation 1036695 1036695 . . . alleles " A G"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; known ; N/A GL192484.1 samtools variation 1037085 1037085 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192484.1 samtools variation 1066295 1066295 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192484.1 samtools variation 1541924 1541924 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192484.1 samtools variation 1574972 1574972 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192484.1 samtools variation 2062982 2062982 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192484.1 samtools variation 2063346 2063346 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192484.1 samtools variation 2099167 2099167 . . . alleles " T C"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; known ; N/A GL192484.1 samtools variation 2099173 2099173 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL192484.1 samtools variation 2099551 2099551 . . . alleles " A G"; frequencies " 0.407407407407407 0.592592592592593"; depth 54 ; known ; N/A GL192484.1 samtools variation 2100233 2100233 . . . alleles " G T"; frequencies " 0.739130434782609 0.260869565217391"; depth 92 ; unknown ; N/A GL192484.1 samtools variation 2102753 2102753 . . . alleles " T C"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; known ; N/A GL192484.1 samtools variation 2102878 2102878 . . . alleles " C T"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192484.1 samtools variation 2108155 2108155 . . . alleles " G A"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL192484.1 samtools variation 2108710 2108710 . . . alleles " G A"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL192484.1 samtools variation 2108948 2108948 . . . alleles " C T"; frequencies " 0.708092485549133 0.291907514450867"; depth 346 ; unknown ; non-synonymous GL192484.1 samtools variation 2130902 2130902 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192484.1 samtools variation 2130940 2130940 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL192484.1 samtools variation 2132753 2132753 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192484.1 samtools variation 2134878 2134878 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 50 ; known ; N/A GL192484.1 samtools variation 2159613 2159613 . . . alleles " A G"; frequencies " 0.765957446808511 0.234042553191489"; depth 235 ; unknown ; synonymous GL192484.1 samtools variation 2295424 2295424 . . . alleles " C T"; frequencies " 0.770428015564202 0.229571984435798"; depth 257 ; unknown ; N/A GL192484.1 samtools variation 2303949 2303949 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192484.1 samtools variation 2317649 2317649 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192484.1 samtools variation 2342643 2342643 . . . alleles " C A"; frequencies " 0.625 0.375"; depth 16 ; known ; non-synonymous GL192484.1 samtools variation 2342941 2342941 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192484.1 samtools variation 2354014 2354014 . . . alleles " G A"; frequencies " 0.779220779220779 0.220779220779221"; depth 77 ; known ; N/A GL192484.1 samtools variation 2354024 2354024 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 76 ; known ; N/A GL192485.1 samtools variation 1676255 1676255 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192485.1 samtools variation 1678451 1678451 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192485.1 samtools variation 1730732 1730732 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; synonymous GL192485.1 samtools variation 1814467 1814467 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; synonymous GL192486.1 samtools variation 64760 64760 . . . alleles " C T"; frequencies " 0.313653136531365 0.686346863468635"; depth 271 ; known ; N/A GL192486.1 samtools variation 64951 64951 . . . alleles " T C"; frequencies " 0.365448504983389 0.634551495016611"; depth 301 ; known ; N/A GL192486.1 samtools variation 66007 66007 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 90 ; known ; N/A GL192486.1 samtools variation 68030 68030 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 125 ; unknown ; N/A GL192486.1 samtools variation 93424 93424 . . . alleles " C A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192486.1 samtools variation 165157 165157 . . . alleles " T G"; frequencies " 0.791666666666667 0.208333333333333"; depth 96 ; unknown ; non-synonymous GL192486.1 samtools variation 360833 360833 . . . alleles " T G"; frequencies " 0.222222222222222 0.777777777777778"; depth 36 ; known ; N/A GL192486.1 samtools variation 360972 360972 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192486.1 samtools variation 361141 361141 . . . alleles " T C"; frequencies " 0.314285714285714 0.685714285714286"; depth 35 ; known ; N/A GL192486.1 samtools variation 361718 361718 . . . alleles " G T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192486.1 samtools variation 374865 374865 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; known ; non-synonymous GL192486.1 samtools variation 531170 531170 . . . alleles " T C"; frequencies " 0.21875 0.78125"; depth 96 ; known ; synonymous GL192486.1 samtools variation 540963 540963 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192486.1 samtools variation 540988 540988 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192486.1 samtools variation 547550 547550 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192486.1 samtools variation 565595 565595 . . . alleles " T C"; frequencies " 0.765957446808511 0.226950354609929"; depth 141 ; unknown ; synonymous GL192486.1 samtools variation 589537 589537 . . . alleles " G A"; frequencies " 0.792682926829268 0.207317073170732"; depth 82 ; unknown ; N/A GL192486.1 samtools variation 590283 590283 . . . alleles " G A"; frequencies " 0.66969696969697 0.33030303030303"; depth 330 ; unknown ; N/A GL192486.1 samtools variation 592172 592172 . . . alleles " C T"; frequencies " 0.671232876712329 0.328767123287671"; depth 73 ; unknown ; N/A GL192486.1 samtools variation 592398 592398 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 161 ; unknown ; N/A GL192486.1 samtools variation 592400 592400 . . . alleles " C T"; frequencies " 0.432098765432099 0.567901234567901"; depth 162 ; unknown ; N/A GL192486.1 samtools variation 593007 593007 . . . alleles " A T"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL192486.1 samtools variation 593207 593207 . . . alleles " T C"; frequencies " 0.298969072164948 0.701030927835051"; depth 97 ; unknown ; N/A GL192486.1 samtools variation 593357 593357 . . . alleles " T G"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192486.1 samtools variation 593792 593792 . . . alleles " G A"; frequencies " 0.385964912280702 0.614035087719298"; depth 57 ; unknown ; N/A GL192486.1 samtools variation 593890 593890 . . . alleles " T C"; frequencies " 0.394230769230769 0.605769230769231"; depth 104 ; unknown ; N/A GL192486.1 samtools variation 927523 927523 . . . alleles " G A"; frequencies " 0.768115942028985 0.231884057971014"; depth 69 ; unknown ; synonymous GL192486.1 samtools variation 927861 927861 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192486.1 samtools variation 1405154 1405154 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192486.1 samtools variation 1405820 1405820 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL192486.1 samtools variation 1407903 1407903 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192486.1 samtools variation 1407971 1407971 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192486.1 samtools variation 1408746 1408746 . . . alleles " A G"; frequencies " 0.711795467751307 0.288204532248693"; depth 1721 ; unknown ; synonymous GL192486.1 samtools variation 1408821 1408821 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192486.1 samtools variation 1409527 1409527 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192486.1 samtools variation 1411274 1411274 . . . alleles " G A"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; N/A GL192486.1 samtools variation 1411405 1411405 . . . alleles " G C"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192486.1 samtools variation 1411514 1411514 . . . alleles " G A"; frequencies " 0.612244897959184 0.387755102040816"; depth 49 ; known ; N/A GL192486.1 samtools variation 1411556 1411556 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192486.1 samtools variation 1411734 1411734 . . . alleles " C T"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL192486.1 samtools variation 1411782 1411782 . . . alleles " A C"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL192486.1 samtools variation 1411859 1411859 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192486.1 samtools variation 1412472 1412472 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192486.1 samtools variation 1414571 1414571 . . . alleles " C T"; frequencies " 0.678571428571429 0.321428571428571"; depth 56 ; unknown ; N/A GL192486.1 samtools variation 1415239 1415239 . . . alleles " C T"; frequencies " 0.447368421052632 0.552631578947368"; depth 38 ; known ; N/A GL192486.1 samtools variation 1415986 1415986 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL192486.1 samtools variation 1416080 1416080 . . . alleles " T C"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; unknown ; N/A GL192486.1 samtools variation 2434092 2434092 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192486.1 samtools variation 2435857 2435857 . . . alleles " C A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; known ; N/A GL192487.1 samtools variation 31483 31483 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192487.1 samtools variation 33554 33554 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192487.1 samtools variation 41887 41887 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 54 ; unknown ; synonymous GL192487.1 samtools variation 149538 149538 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; synonymous GL192487.1 samtools variation 149883 149883 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; synonymous GL192487.1 samtools variation 153143 153143 . . . alleles " T C"; frequencies " 0.530864197530864 0.469135802469136"; depth 81 ; unknown ; synonymous GL192487.1 samtools variation 154149 154149 . . . alleles " G A"; frequencies " 0.317460317460317 0.682539682539683"; depth 63 ; unknown ; synonymous GL192487.1 samtools variation 163723 163723 . . . alleles " A G"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; synonymous GL192487.1 samtools variation 163771 163771 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; unknown ; synonymous GL192487.1 samtools variation 164666 164666 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 52 ; unknown ; non-synonymous GL192487.1 samtools variation 164815 164815 . . . alleles " G A"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; synonymous GL192487.1 samtools variation 176783 176783 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192487.1 samtools variation 587172 587172 . . . alleles " G A"; frequencies " 0.664670658682635 0.335329341317365"; depth 167 ; unknown ; N/A GL192487.1 samtools variation 666495 666495 . . . alleles " A G"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL192487.1 samtools variation 717240 717240 . . . alleles " C T"; frequencies " 0.280254777070064 0.713375796178344"; depth 157 ; unknown ; synonymous GL192487.1 samtools variation 726884 726884 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192487.1 samtools variation 744775 744775 . . . alleles " C G"; frequencies " 0.28448275862069 0.71551724137931"; depth 116 ; unknown ; synonymous GL192487.1 samtools variation 746390 746390 . . . alleles " T G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192487.1 samtools variation 756602 756602 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192487.1 samtools variation 765897 765897 . . . alleles " G C"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192487.1 samtools variation 767372 767372 . . . alleles " A G"; frequencies " 0.295774647887324 0.704225352112676"; depth 71 ; unknown ; N/A GL192487.1 samtools variation 781345 781345 . . . alleles " C A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192487.1 samtools variation 857383 857383 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192487.1 samtools variation 857528 857528 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192487.1 samtools variation 863990 863990 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192487.1 samtools variation 864002 864002 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192487.1 samtools variation 932388 932388 . . . alleles " G A"; frequencies " 0.765116279069767 0.234883720930233"; depth 430 ; unknown ; synonymous GL192487.1 samtools variation 948434 948434 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192487.1 samtools variation 962601 962601 . . . alleles " G A"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192487.1 samtools variation 964628 964628 . . . alleles " G A"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; unknown ; N/A GL192487.1 samtools variation 967104 967104 . . . alleles " A G"; frequencies " 0.7375 0.2625"; depth 80 ; unknown ; N/A GL192487.1 samtools variation 967658 967658 . . . alleles " T C"; frequencies " 0.305177111716621 0.694822888283379"; depth 367 ; unknown ; N/A GL192487.1 samtools variation 967923 967923 . . . alleles " C T"; frequencies " 0.268041237113402 0.731958762886598"; depth 194 ; unknown ; N/A GL192487.1 samtools variation 968005 968005 . . . alleles " A G"; frequencies " 0.208791208791209 0.791208791208791"; depth 182 ; unknown ; N/A GL192487.1 samtools variation 968019 968019 . . . alleles " C T"; frequencies " 0.212290502793296 0.787709497206704"; depth 179 ; unknown ; N/A GL192487.1 samtools variation 970956 970956 . . . alleles " A G"; frequencies " 0.377777777777778 0.622222222222222"; depth 45 ; unknown ; N/A GL192487.1 samtools variation 972065 972065 . . . alleles " C T"; frequencies " 0.678571428571429 0.321428571428571"; depth 56 ; unknown ; N/A GL192487.1 samtools variation 978866 978866 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192487.1 samtools variation 980368 980368 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192487.1 samtools variation 1002382 1002382 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192487.1 samtools variation 1149226 1149226 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; synonymous GL192487.1 samtools variation 1154295 1154295 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; synonymous GL192487.1 samtools variation 1157348 1157348 . . . alleles " C T"; frequencies " 0.710144927536232 0.289855072463768"; depth 69 ; unknown ; synonymous GL192487.1 samtools variation 1157803 1157803 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; synonymous GL192487.1 samtools variation 1179043 1179043 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; synonymous GL192487.1 samtools variation 1191396 1191396 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192487.1 samtools variation 1213248 1213248 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 90 ; unknown ; synonymous GL192487.1 samtools variation 1228264 1228264 . . . alleles " T C"; frequencies " 0.452830188679245 0.547169811320755"; depth 53 ; unknown ; synonymous GL192487.1 samtools variation 1242545 1242545 . . . alleles " T C"; frequencies " 0.405405405405405 0.594594594594595"; depth 37 ; unknown ; N/A GL192487.1 samtools variation 1242659 1242659 . . . alleles " A G"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; unknown ; N/A GL192487.1 samtools variation 1242900 1242900 . . . alleles " C T"; frequencies " 0.212765957446809 0.787234042553192"; depth 47 ; unknown ; N/A GL192487.1 samtools variation 1243078 1243078 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192487.1 samtools variation 1243531 1243531 . . . alleles " C T"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192487.1 samtools variation 1243618 1243618 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL192487.1 samtools variation 1243692 1243692 . . . alleles " T C"; frequencies " 0.210526315789474 0.789473684210526"; depth 38 ; unknown ; N/A GL192487.1 samtools variation 1246066 1246066 . . . alleles " A T"; frequencies " 0.436363636363636 0.563636363636364"; depth 55 ; unknown ; N/A GL192487.1 samtools variation 1462193 1462193 . . . alleles " T C"; frequencies " 0.697547683923706 0.302452316076294"; depth 367 ; unknown ; synonymous GL192487.1 samtools variation 2051505 2051505 . . . alleles " A G"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; synonymous GL192487.1 samtools variation 2051528 2051528 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; non-synonymous GL192487.1 samtools variation 2056860 2056860 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; non-synonymous GL192487.1 samtools variation 2083967 2083967 . . . alleles " A C"; frequencies " 0.705263157894737 0.294736842105263"; depth 95 ; unknown ; synonymous GL192487.1 samtools variation 2094751 2094751 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192487.1 samtools variation 2110093 2110093 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; non-synonymous GL192487.1 samtools variation 2224454 2224454 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 24 ; known ; N/A GL192488.1 samtools variation 788942 788942 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192488.1 samtools variation 789857 789857 . . . alleles " T C"; frequencies " 0.4 0.5"; depth 30 ; unknown ; non-synonymous GL192488.1 samtools variation 791661 791661 . . . alleles " T G"; frequencies " 0.7265625 0.2734375"; depth 128 ; unknown ; N/A GL192488.1 samtools variation 792560 792560 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192488.1 samtools variation 825384 825384 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; non-synonymous GL192488.1 samtools variation 999076 999076 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192488.1 samtools variation 1066225 1066225 . . . alleles " T C"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192488.1 samtools variation 1066226 1066226 . . . alleles " A G"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192488.1 samtools variation 1066271 1066271 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192488.1 samtools variation 1066286 1066286 . . . alleles " A G"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL192488.1 samtools variation 1090882 1090882 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192488.1 samtools variation 1310051 1310051 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192488.1 samtools variation 1312507 1312507 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192488.1 samtools variation 1315051 1315051 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192488.1 samtools variation 1315171 1315171 . . . alleles " G T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192488.1 samtools variation 1317858 1317858 . . . alleles " A C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192488.1 samtools variation 1320045 1320045 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192488.1 samtools variation 1320473 1320473 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192488.1 samtools variation 1484091 1484091 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192489.1 samtools variation 625989 625989 . . . alleles " T G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; non-synonymous GL192489.1 samtools variation 679545 679545 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; synonymous GL192489.1 samtools variation 731531 731531 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; synonymous GL192489.1 samtools variation 731732 731732 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; synonymous GL192489.1 samtools variation 754410 754410 . . . alleles " G A"; frequencies " 0.508771929824561 0.491228070175439"; depth 57 ; unknown ; N/A GL192489.1 samtools variation 754514 754514 . . . alleles " A G"; frequencies " 0.577777777777778 0.422222222222222"; depth 45 ; unknown ; N/A GL192489.1 samtools variation 754843 754843 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192489.1 samtools variation 760395 760395 . . . alleles " A C"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; N/A GL192489.1 samtools variation 760536 760536 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 46 ; unknown ; N/A GL192489.1 samtools variation 839023 839023 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192489.1 samtools variation 839080 839080 . . . alleles " A G"; frequencies " 0.62 0.38"; depth 50 ; unknown ; N/A GL192489.1 samtools variation 839246 839246 . . . alleles " T G"; frequencies " 0.692307692307692 0.307692307692308"; depth 52 ; unknown ; N/A GL192489.1 samtools variation 840375 840375 . . . alleles " G T"; frequencies " 0.781818181818182 0.218181818181818"; depth 55 ; unknown ; N/A GL192489.1 samtools variation 841778 841778 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192489.1 samtools variation 841991 841991 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 55 ; unknown ; N/A GL192489.1 samtools variation 842052 842052 . . . alleles " T C"; frequencies " 0.585106382978723 0.414893617021277"; depth 94 ; unknown ; N/A GL192489.1 samtools variation 843930 843930 . . . alleles " G T"; frequencies " 0.76056338028169 0.23943661971831"; depth 71 ; unknown ; synonymous GL192489.1 samtools variation 852592 852592 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 52 ; unknown ; synonymous GL192489.1 samtools variation 1518428 1518428 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192489.1 samtools variation 1567760 1567760 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192489.1 samtools variation 1571728 1571728 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192489.1 samtools variation 1572052 1572052 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192489.1 samtools variation 1604483 1604483 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192489.1 samtools variation 1857748 1857748 . . . alleles " G A"; frequencies " 0.28 0.72"; depth 25 ; unknown ; synonymous GL192489.1 samtools variation 1895476 1895476 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192489.1 samtools variation 1896299 1896299 . . . alleles " C A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192489.1 samtools variation 1897354 1897354 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192489.1 samtools variation 1898676 1898676 . . . alleles " T C"; frequencies " 0.698412698412698 0.301587301587302"; depth 63 ; unknown ; N/A GL192489.1 samtools variation 1899274 1899274 . . . alleles " A C"; frequencies " 0.490196078431373 0.509803921568627"; depth 51 ; unknown ; N/A GL192489.1 samtools variation 1978884 1978884 . . . alleles " C T"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192489.1 samtools variation 2098209 2098209 . . . alleles " G A"; frequencies " 0.34375 0.65625"; depth 32 ; unknown ; synonymous GL192489.1 samtools variation 2109090 2109090 . . . alleles " C T"; frequencies " 0.559322033898305 0.440677966101695"; depth 59 ; unknown ; synonymous GL192489.1 samtools variation 2165426 2165426 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 64 ; unknown ; non-synonymous GL192489.1 samtools variation 2166103 2166103 . . . alleles " A G"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL192489.1 samtools variation 2166464 2166464 . . . alleles " G A"; frequencies " 0.573033707865168 0.426966292134831"; depth 89 ; unknown ; N/A GL192489.1 samtools variation 2167036 2167036 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 60 ; unknown ; N/A GL192490.1 samtools variation 2291545 2291545 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192490.1 samtools variation 2291879 2291879 . . . alleles " G T"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192490.1 samtools variation 2292763 2292763 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192490.1 samtools variation 2316929 2316929 . . . alleles " G A"; frequencies " 0.292682926829268 0.707317073170732"; depth 41 ; known ; non-synonymous GL192491.1 samtools variation 254716 254716 . . . alleles " A C"; frequencies " 0.530864197530864 0.469135802469136"; depth 162 ; known ; N/A GL192491.1 samtools variation 2266991 2266991 . . . alleles " G C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192491.1 samtools variation 2321354 2321354 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192491.1 samtools variation 2322094 2322094 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192491.1 samtools variation 2345653 2345653 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192492.1 samtools variation 68352 68352 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192492.1 samtools variation 68900 68900 . . . alleles " C G"; frequencies " 0.720430107526882 0.279569892473118"; depth 186 ; unknown ; non-synonymous GL192492.1 samtools variation 112946 112946 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192492.1 samtools variation 113135 113135 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 55 ; known ; synonymous GL192492.1 samtools variation 129604 129604 . . . alleles " G T"; frequencies " 0.48 0.52"; depth 50 ; known ; N/A GL192492.1 samtools variation 130018 130018 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192492.1 samtools variation 149732 149732 . . . alleles " G A"; frequencies " 0.285188592456302 0.713891444342226"; depth 1087 ; known ; N/A GL192492.1 samtools variation 162351 162351 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192492.1 samtools variation 163227 163227 . . . alleles " A T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192492.1 samtools variation 248582 248582 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; known ; N/A GL192492.1 samtools variation 292362 292362 . . . alleles " G A"; frequencies " 0.664723032069971 0.335276967930029"; depth 686 ; unknown ; synonymous GL192492.1 samtools variation 293386 293386 . . . alleles " C A"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL192492.1 samtools variation 299463 299463 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192492.1 samtools variation 300759 300759 . . . alleles " C T"; frequencies " 0.328828828828829 0.666666666666667"; depth 222 ; known ; synonymous GL192492.1 samtools variation 304492 304492 . . . alleles " G A"; frequencies " 0.65266106442577 0.34733893557423"; depth 357 ; known ; synonymous GL192492.1 samtools variation 349584 349584 . . . alleles " C T"; frequencies " 0.557142857142857 0.442857142857143"; depth 70 ; known ; N/A GL192492.1 samtools variation 349627 349627 . . . alleles " T C"; frequencies " 0.223880597014925 0.776119402985075"; depth 67 ; known ; N/A GL192492.1 samtools variation 349637 349637 . . . alleles " C A"; frequencies " 0.72463768115942 0.27536231884058"; depth 69 ; unknown ; N/A GL192492.1 samtools variation 350342 350342 . . . alleles " T C"; frequencies " 0.345454545454545 0.654545454545455"; depth 55 ; known ; N/A GL192492.1 samtools variation 350406 350406 . . . alleles " C T"; frequencies " 0.694915254237288 0.305084745762712"; depth 59 ; known ; N/A GL192492.1 samtools variation 350712 350712 . . . alleles " A G"; frequencies " 0.426630434782609 0.573369565217391"; depth 736 ; known ; N/A GL192492.1 samtools variation 352455 352455 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL192492.1 samtools variation 352626 352626 . . . alleles " T C"; frequencies " 0.315789473684211 0.684210526315789"; depth 57 ; known ; N/A GL192492.1 samtools variation 352639 352639 . . . alleles " T G"; frequencies " 0.621212121212121 0.378787878787879"; depth 66 ; unknown ; N/A GL192492.1 samtools variation 352841 352841 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192492.1 samtools variation 353017 353017 . . . alleles " G T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192492.1 samtools variation 355550 355550 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192492.1 samtools variation 355731 355731 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 52 ; unknown ; N/A GL192492.1 samtools variation 356630 356630 . . . alleles " T G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192492.1 samtools variation 356687 356687 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192492.1 samtools variation 379584 379584 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192492.1 samtools variation 380614 380614 . . . alleles " A G"; frequencies " 0.366071428571429 0.616071428571429"; depth 112 ; known ; synonymous GL192492.1 samtools variation 381399 381399 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192492.1 samtools variation 381409 381409 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192492.1 samtools variation 381742 381742 . . . alleles " G A"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; known ; N/A GL192492.1 samtools variation 387781 387781 . . . alleles " A G"; frequencies " 0.676190476190476 0.323809523809524"; depth 105 ; known ; non-synonymous GL192492.1 samtools variation 391195 391195 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 95 ; known ; non-synonymous GL192492.1 samtools variation 429171 429171 . . . alleles " G T"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; unknown ; N/A GL192492.1 samtools variation 430139 430139 . . . alleles " G A"; frequencies " 0.690909090909091 0.309090909090909"; depth 220 ; unknown ; synonymous GL192492.1 samtools variation 430511 430511 . . . alleles " C T"; frequencies " 0.615711252653928 0.384288747346072"; depth 471 ; unknown ; N/A GL192492.1 samtools variation 450344 450344 . . . alleles " C A"; frequencies " 0.307692307692308 0.692307692307692"; depth 104 ; unknown ; N/A GL192492.1 samtools variation 454562 454562 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192492.1 samtools variation 454718 454718 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192492.1 samtools variation 455735 455735 . . . alleles " C A"; frequencies " 0.64321608040201 0.35678391959799"; depth 199 ; unknown ; non-synonymous GL192492.1 samtools variation 455807 455807 . . . alleles " C T"; frequencies " 0.720930232558139 0.27906976744186"; depth 43 ; known ; N/A GL192492.1 samtools variation 456388 456388 . . . alleles " A G"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; known ; N/A GL192492.1 samtools variation 456460 456460 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL192492.1 samtools variation 458610 458610 . . . alleles " A G"; frequencies " 0.760330578512397 0.239669421487603"; depth 242 ; unknown ; synonymous GL192492.1 samtools variation 544345 544345 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; non-synonymous GL192492.1 samtools variation 567734 567734 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192492.1 samtools variation 603157 603157 . . . alleles " G T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192492.1 samtools variation 607034 607034 . . . alleles " G C"; frequencies " 0.514462809917355 0.485537190082645"; depth 484 ; unknown ; synonymous GL192492.1 samtools variation 614779 614779 . . . alleles " A G"; frequencies " 0.217270194986072 0.782729805013928"; depth 718 ; unknown ; N/A GL192492.1 samtools variation 622345 622345 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192492.1 samtools variation 622441 622441 . . . alleles " G C"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192492.1 samtools variation 625430 625430 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192492.1 samtools variation 629195 629195 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192492.1 samtools variation 643813 643813 . . . alleles " G A"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; non-synonymous GL192492.1 samtools variation 648520 648520 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192492.1 samtools variation 662389 662389 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 170 ; unknown ; N/A GL192492.1 samtools variation 662575 662575 . . . alleles " T C"; frequencies " 0.365384615384615 0.634615384615385"; depth 156 ; unknown ; N/A GL192492.1 samtools variation 666732 666732 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192492.1 samtools variation 666819 666819 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192492.1 samtools variation 666868 666868 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192492.1 samtools variation 666882 666882 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192492.1 samtools variation 667136 667136 . . . alleles " A T"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL192492.1 samtools variation 668476 668476 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192492.1 samtools variation 668928 668928 . . . alleles " G T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192492.1 samtools variation 669260 669260 . . . alleles " G C"; frequencies " 0.214285714285714 0.785714285714286"; depth 70 ; unknown ; N/A GL192492.1 samtools variation 670027 670027 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 32 ; unknown ; N/A GL192492.1 samtools variation 670342 670342 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192492.1 samtools variation 671566 671566 . . . alleles " C T"; frequencies " 0.220338983050847 0.779661016949153"; depth 59 ; unknown ; synonymous GL192492.1 samtools variation 671870 671870 . . . alleles " A G"; frequencies " 0.236111111111111 0.763888888888889"; depth 72 ; unknown ; N/A GL192492.1 samtools variation 671891 671891 . . . alleles " G A"; frequencies " 0.264150943396226 0.735849056603774"; depth 53 ; unknown ; N/A GL192492.1 samtools variation 672049 672049 . . . alleles " C A"; frequencies " 0.266666666666667 0.733333333333333"; depth 45 ; unknown ; N/A GL192492.1 samtools variation 672201 672201 . . . alleles " T G"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; N/A GL192492.1 samtools variation 672202 672202 . . . alleles " C A"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; unknown ; N/A GL192492.1 samtools variation 673211 673211 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192492.1 samtools variation 674140 674140 . . . alleles " A C"; frequencies " 0.278225806451613 0.721774193548387"; depth 248 ; unknown ; synonymous GL192492.1 samtools variation 675613 675613 . . . alleles " G A"; frequencies " 0.287958115183246 0.712041884816754"; depth 191 ; unknown ; synonymous GL192492.1 samtools variation 675625 675625 . . . alleles " G T"; frequencies " 0.261467889908257 0.738532110091743"; depth 218 ; unknown ; synonymous GL192492.1 samtools variation 681887 681887 . . . alleles " C G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192492.1 samtools variation 682809 682809 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192492.1 samtools variation 682817 682817 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192492.1 samtools variation 687120 687120 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; synonymous GL192492.1 samtools variation 689446 689446 . . . alleles " G A"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; unknown ; N/A GL192492.1 samtools variation 720567 720567 . . . alleles " C T"; frequencies " 0.654761904761905 0.345238095238095"; depth 84 ; unknown ; non-synonymous GL192492.1 samtools variation 723728 723728 . . . alleles " G A"; frequencies " 0.446428571428571 0.553571428571429"; depth 56 ; unknown ; synonymous GL192492.1 samtools variation 747225 747225 . . . alleles " G C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192492.1 samtools variation 752846 752846 . . . alleles " G C"; frequencies " 0.294605809128631 0.705394190871369"; depth 1446 ; unknown ; N/A GL192492.1 samtools variation 753621 753621 . . . alleles " A G"; frequencies " 0.380408163265306 0.619591836734694"; depth 1225 ; unknown ; N/A GL192492.1 samtools variation 755432 755432 . . . alleles " G A"; frequencies " 0.206672091131001 0.793327908868999"; depth 1229 ; unknown ; N/A GL192492.1 samtools variation 761060 761060 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192492.1 samtools variation 761200 761200 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192492.1 samtools variation 761347 761347 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192492.1 samtools variation 773650 773650 . . . alleles " C A"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL192492.1 samtools variation 773662 773662 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL192492.1 samtools variation 774437 774437 . . . alleles " A G"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; unknown ; N/A GL192492.1 samtools variation 775288 775288 . . . alleles " C A"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192492.1 samtools variation 778821 778821 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192492.1 samtools variation 785058 785058 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192492.1 samtools variation 785079 785079 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192492.1 samtools variation 785144 785144 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192492.1 samtools variation 785152 785152 . . . alleles " C A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192492.1 samtools variation 785231 785231 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 44 ; unknown ; N/A GL192492.1 samtools variation 785973 785973 . . . alleles " T C"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192492.1 samtools variation 786681 786681 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 42 ; unknown ; N/A GL192492.1 samtools variation 787436 787436 . . . alleles " C T"; frequencies " 0.67741935483871 0.32258064516129"; depth 62 ; unknown ; N/A GL192492.1 samtools variation 787524 787524 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 85 ; unknown ; N/A GL192492.1 samtools variation 787561 787561 . . . alleles " G A"; frequencies " 0.49438202247191 0.49438202247191"; depth 89 ; unknown ; N/A GL192492.1 samtools variation 787622 787622 . . . alleles " A C"; frequencies " 0.492307692307692 0.507692307692308"; depth 65 ; unknown ; N/A GL192492.1 samtools variation 787781 787781 . . . alleles " G A"; frequencies " 0.547169811320755 0.452830188679245"; depth 53 ; unknown ; N/A GL192492.1 samtools variation 788042 788042 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; unknown ; N/A GL192492.1 samtools variation 788988 788988 . . . alleles " C T"; frequencies " 0.51063829787234 0.48936170212766"; depth 47 ; unknown ; N/A GL192492.1 samtools variation 789417 789417 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 54 ; unknown ; N/A GL192492.1 samtools variation 790462 790462 . . . alleles " G A"; frequencies " 0.3875 0.6125"; depth 80 ; unknown ; N/A GL192492.1 samtools variation 790662 790662 . . . alleles " T C"; frequencies " 0.326923076923077 0.673076923076923"; depth 104 ; unknown ; N/A GL192492.1 samtools variation 791790 791790 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 100 ; unknown ; N/A GL192492.1 samtools variation 792368 792368 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 56 ; unknown ; N/A GL192492.1 samtools variation 792908 792908 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 78 ; unknown ; N/A GL192492.1 samtools variation 792959 792959 . . . alleles " G A"; frequencies " 0.58 0.42"; depth 50 ; unknown ; N/A GL192492.1 samtools variation 794787 794787 . . . alleles " T C"; frequencies " 0.459459459459459 0.540540540540541"; depth 74 ; unknown ; N/A GL192492.1 samtools variation 795681 795681 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 63 ; unknown ; N/A GL192492.1 samtools variation 795710 795710 . . . alleles " C A"; frequencies " 0.76271186440678 0.23728813559322"; depth 59 ; unknown ; N/A GL192492.1 samtools variation 795853 795853 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL192492.1 samtools variation 796047 796047 . . . alleles " C A"; frequencies " 0.357142857142857 0.642857142857143"; depth 84 ; unknown ; N/A GL192492.1 samtools variation 796381 796381 . . . alleles " A G"; frequencies " 0.463917525773196 0.536082474226804"; depth 97 ; unknown ; N/A GL192492.1 samtools variation 796511 796511 . . . alleles " G A"; frequencies " 0.697841726618705 0.302158273381295"; depth 139 ; unknown ; N/A GL192492.1 samtools variation 796636 796636 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 36 ; unknown ; N/A GL192492.1 samtools variation 796658 796658 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 35 ; unknown ; N/A GL192492.1 samtools variation 796703 796703 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 66 ; unknown ; N/A GL192492.1 samtools variation 797035 797035 . . . alleles " A G"; frequencies " 0.56140350877193 0.43859649122807"; depth 57 ; unknown ; N/A GL192492.1 samtools variation 797061 797061 . . . alleles " C A"; frequencies " 0.358208955223881 0.641791044776119"; depth 67 ; unknown ; N/A GL192492.1 samtools variation 797467 797467 . . . alleles " A T"; frequencies " 0.685950413223141 0.31404958677686"; depth 121 ; unknown ; N/A GL192492.1 samtools variation 797545 797545 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 100 ; unknown ; N/A GL192492.1 samtools variation 797828 797828 . . . alleles " C G"; frequencies " 0.529411764705882 0.470588235294118"; depth 136 ; unknown ; N/A GL192492.1 samtools variation 798131 798131 . . . alleles " G A"; frequencies " 0.522935779816514 0.477064220183486"; depth 109 ; unknown ; N/A GL192492.1 samtools variation 798171 798171 . . . alleles " T C"; frequencies " 0.537037037037037 0.462962962962963"; depth 54 ; unknown ; N/A GL192492.1 samtools variation 800173 800173 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL192492.1 samtools variation 800333 800333 . . . alleles " A G"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; unknown ; N/A GL192492.1 samtools variation 800457 800457 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 162 ; unknown ; N/A GL192492.1 samtools variation 801021 801021 . . . alleles " G T"; frequencies " 0.467836257309941 0.532163742690059"; depth 171 ; unknown ; N/A GL192492.1 samtools variation 801264 801264 . . . alleles " G A"; frequencies " 0.477272727272727 0.522727272727273"; depth 44 ; unknown ; N/A GL192492.1 samtools variation 801367 801367 . . . alleles " T C"; frequencies " 0.540540540540541 0.459459459459459"; depth 37 ; unknown ; N/A GL192492.1 samtools variation 802702 802702 . . . alleles " A T"; frequencies " 0.440860215053763 0.559139784946237"; depth 93 ; unknown ; N/A GL192492.1 samtools variation 803219 803219 . . . alleles " T C"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; unknown ; N/A GL192492.1 samtools variation 804477 804477 . . . alleles " C A"; frequencies " 0.641304347826087 0.358695652173913"; depth 92 ; unknown ; N/A GL192492.1 samtools variation 804479 804479 . . . alleles " G A"; frequencies " 0.645161290322581 0.354838709677419"; depth 93 ; unknown ; N/A GL192492.1 samtools variation 805349 805349 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192492.1 samtools variation 805876 805876 . . . alleles " T C"; frequencies " 0.786666666666667 0.213333333333333"; depth 150 ; unknown ; N/A GL192492.1 samtools variation 806529 806529 . . . alleles " G A"; frequencies " 0.236363636363636 0.763636363636364"; depth 55 ; known ; N/A GL192492.1 samtools variation 820449 820449 . . . alleles " C G"; frequencies " 0.705263157894737 0.294736842105263"; depth 95 ; unknown ; N/A GL192492.1 samtools variation 821967 821967 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192492.1 samtools variation 823475 823475 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192492.1 samtools variation 823634 823634 . . . alleles " T C"; frequencies " 0.567164179104478 0.432835820895522"; depth 67 ; unknown ; non-synonymous GL192492.1 samtools variation 823656 823656 . . . alleles " C T"; frequencies " 0.736111111111111 0.263888888888889"; depth 72 ; unknown ; synonymous GL192492.1 samtools variation 832536 832536 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 25 ; unknown ; synonymous GL192492.1 samtools variation 832550 832550 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 26 ; unknown ; non-synonymous GL192492.1 samtools variation 835487 835487 . . . alleles " G C"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; synonymous GL192492.1 samtools variation 866491 866491 . . . alleles " G A"; frequencies " 0.700704225352113 0.299295774647887"; depth 284 ; unknown ; N/A GL192492.1 samtools variation 871508 871508 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192492.1 samtools variation 876614 876614 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192492.1 samtools variation 888300 888300 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192492.1 samtools variation 905622 905622 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 65 ; unknown ; N/A GL192492.1 samtools variation 905697 905697 . . . alleles " T C"; frequencies " 0.56140350877193 0.43859649122807"; depth 57 ; unknown ; N/A GL192492.1 samtools variation 905724 905724 . . . alleles " T C"; frequencies " 0.516666666666667 0.483333333333333"; depth 60 ; unknown ; N/A GL192492.1 samtools variation 905989 905989 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; synonymous GL192492.1 samtools variation 906861 906861 . . . alleles " G A"; frequencies " 0.465753424657534 0.534246575342466"; depth 73 ; unknown ; synonymous GL192492.1 samtools variation 906999 906999 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL192492.1 samtools variation 907248 907248 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; unknown ; N/A GL192492.1 samtools variation 907572 907572 . . . alleles " G A"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; N/A GL192492.1 samtools variation 931031 931031 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192492.1 samtools variation 1010386 1010386 . . . alleles " C T"; frequencies " 0.771186440677966 0.228813559322034"; depth 118 ; known ; N/A GL192492.1 samtools variation 1010699 1010699 . . . alleles " G A"; frequencies " 0.680288461538462 0.319711538461538"; depth 416 ; unknown ; synonymous GL192492.1 samtools variation 1072920 1072920 . . . alleles " G T"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; unknown ; N/A GL192492.1 samtools variation 1072946 1072946 . . . alleles " C T"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL192492.1 samtools variation 1073987 1073987 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192492.1 samtools variation 1076959 1076959 . . . alleles " C T"; frequencies " 0.708520179372197 0.291479820627803"; depth 223 ; unknown ; synonymous GL192492.1 samtools variation 1077343 1077343 . . . alleles " T C"; frequencies " 0.757281553398058 0.242718446601942"; depth 103 ; unknown ; synonymous GL192492.1 samtools variation 1077519 1077519 . . . alleles " A G"; frequencies " 0.734513274336283 0.265486725663717"; depth 113 ; unknown ; non-synonymous GL192492.1 samtools variation 1078510 1078510 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192492.1 samtools variation 1079336 1079336 . . . alleles " C G"; frequencies " 0.559895833333333 0.440104166666667"; depth 384 ; unknown ; N/A GL192492.1 samtools variation 1080277 1080277 . . . alleles " A G"; frequencies " 0.682432432432432 0.317567567567568"; depth 148 ; unknown ; N/A GL192492.1 samtools variation 1080471 1080471 . . . alleles " G C"; frequencies " 0.493827160493827 0.333333333333333"; depth 81 ; unknown ; N/A GL192492.1 samtools variation 1081067 1081067 . . . alleles " A G"; frequencies " 0.506849315068493 0.493150684931507"; depth 73 ; unknown ; N/A GL192492.1 samtools variation 1084047 1084047 . . . alleles " A G"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; unknown ; N/A GL192492.1 samtools variation 1084048 1084048 . . . alleles " A G"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; unknown ; N/A GL192492.1 samtools variation 1084158 1084158 . . . alleles " A G"; frequencies " 0.548387096774194 0.451612903225806"; depth 62 ; unknown ; N/A GL192492.1 samtools variation 1085176 1085176 . . . alleles " T C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192492.1 samtools variation 1092696 1092696 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; synonymous GL192492.1 samtools variation 1112328 1112328 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192492.1 samtools variation 1112397 1112397 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192492.1 samtools variation 1117834 1117834 . . . alleles " C T"; frequencies " 0.736585365853659 0.263414634146341"; depth 205 ; unknown ; synonymous GL192492.1 samtools variation 1137689 1137689 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192492.1 samtools variation 1141084 1141084 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; synonymous GL192492.1 samtools variation 1153329 1153329 . . . alleles " G A"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL192492.1 samtools variation 1156409 1156409 . . . alleles " C T"; frequencies " 0.342857142857143 0.657142857142857"; depth 245 ; known ; synonymous GL192492.1 samtools variation 1156804 1156804 . . . alleles " C T"; frequencies " 0.385474860335196 0.614525139664804"; depth 179 ; known ; synonymous GL192492.1 samtools variation 1156921 1156921 . . . alleles " A G"; frequencies " 0.723684210526316 0.276315789473684"; depth 152 ; unknown ; synonymous GL192492.1 samtools variation 1157193 1157193 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192492.1 samtools variation 1159999 1159999 . . . alleles " A G"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; known ; N/A GL192492.1 samtools variation 1160375 1160375 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL192492.1 samtools variation 1160450 1160450 . . . alleles " G A"; frequencies " 0.475 0.525"; depth 40 ; known ; N/A GL192492.1 samtools variation 1169807 1169807 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL192492.1 samtools variation 1169809 1169809 . . . alleles " C T"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL192492.1 samtools variation 1169966 1169966 . . . alleles " G A"; frequencies " 0.534246575342466 0.465753424657534"; depth 73 ; unknown ; N/A GL192492.1 samtools variation 1238108 1238108 . . . alleles " C T"; frequencies " 0.593939393939394 0.406060606060606"; depth 165 ; unknown ; N/A GL192492.1 samtools variation 1238282 1238282 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 99 ; unknown ; N/A GL192492.1 samtools variation 1258987 1258987 . . . alleles " T C"; frequencies " 0.627450980392157 0.372549019607843"; depth 51 ; unknown ; non-synonymous GL192492.1 samtools variation 1261675 1261675 . . . alleles " C G"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; N/A GL192492.1 samtools variation 1269707 1269707 . . . alleles " A G"; frequencies " 0.325443786982249 0.674556213017751"; depth 338 ; known ; synonymous GL192492.1 samtools variation 1286404 1286404 . . . alleles " T A"; frequencies " 0.645161290322581 0.354838709677419"; depth 62 ; unknown ; N/A GL192492.1 samtools variation 1289216 1289216 . . . alleles " C G"; frequencies " 0.716216216216216 0.283783783783784"; depth 74 ; unknown ; N/A GL192492.1 samtools variation 1290697 1290697 . . . alleles " T C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192492.1 samtools variation 1291681 1291681 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 48 ; known ; N/A GL192492.1 samtools variation 1293893 1293893 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL192492.1 samtools variation 1302930 1302930 . . . alleles " T C"; frequencies " 0.745290128108515 0.254709871891485"; depth 1327 ; unknown ; synonymous GL192492.1 samtools variation 1303855 1303855 . . . alleles " A G"; frequencies " 0.623239436619718 0.376760563380282"; depth 1420 ; known ; N/A GL192492.1 samtools variation 1304458 1304458 . . . alleles " C G"; frequencies " 0.752100840336134 0.247899159663866"; depth 714 ; unknown ; N/A GL192492.1 samtools variation 1337867 1337867 . . . alleles " T C"; frequencies " 0.698275862068966 0.301724137931034"; depth 116 ; known ; synonymous GL192492.1 samtools variation 1343037 1343037 . . . alleles " C T"; frequencies " 0.680327868852459 0.319672131147541"; depth 122 ; unknown ; N/A GL192492.1 samtools variation 1345614 1345614 . . . alleles " C T"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192492.1 samtools variation 1345744 1345744 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192492.1 samtools variation 1346500 1346500 . . . alleles " A T"; frequencies " 0.357575757575758 0.636363636363636"; depth 165 ; known ; N/A GL192492.1 samtools variation 1348905 1348905 . . . alleles " G A"; frequencies " 0.655619596541787 0.344380403458213"; depth 694 ; unknown ; synonymous GL192492.1 samtools variation 1349863 1349863 . . . alleles " T C"; frequencies " 0.417565485362096 0.582434514637905"; depth 1298 ; known ; synonymous GL192492.1 samtools variation 1354054 1354054 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL192492.1 samtools variation 1354058 1354058 . . . alleles " C G"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL192492.1 samtools variation 1354573 1354573 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192492.1 samtools variation 1354992 1354992 . . . alleles " C T"; frequencies " 0.288135593220339 0.711864406779661"; depth 59 ; known ; N/A GL192492.1 samtools variation 1355053 1355053 . . . alleles " G A"; frequencies " 0.721518987341772 0.278481012658228"; depth 79 ; unknown ; N/A GL192492.1 samtools variation 1355056 1355056 . . . alleles " G A"; frequencies " 0.72289156626506 0.27710843373494"; depth 83 ; unknown ; N/A GL192492.1 samtools variation 1355574 1355574 . . . alleles " T C"; frequencies " 0.790794979079498 0.209205020920502"; depth 239 ; known ; N/A GL192492.1 samtools variation 1355677 1355677 . . . alleles " C A"; frequencies " 0.621681415929204 0.378318584070796"; depth 452 ; unknown ; N/A GL192492.1 samtools variation 1355707 1355707 . . . alleles " C T"; frequencies " 0.598561151079137 0.401438848920863"; depth 695 ; unknown ; N/A GL192492.1 samtools variation 1369009 1369009 . . . alleles " G A"; frequencies " 0.690140845070423 0.309859154929577"; depth 71 ; unknown ; N/A GL192492.1 samtools variation 1370051 1370051 . . . alleles " T C"; frequencies " 0.610687022900763 0.389312977099237"; depth 131 ; unknown ; N/A GL192492.1 samtools variation 1370756 1370756 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 48 ; unknown ; N/A GL192492.1 samtools variation 1380585 1380585 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL192492.1 samtools variation 1398545 1398545 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192492.1 samtools variation 1398812 1398812 . . . alleles " G C"; frequencies " 0.493670886075949 0.506329113924051"; depth 79 ; unknown ; N/A GL192492.1 samtools variation 1405942 1405942 . . . alleles " C T"; frequencies " 0.553435114503817 0.446564885496183"; depth 262 ; known ; N/A GL192492.1 samtools variation 1408740 1408740 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 62 ; known ; N/A GL192492.1 samtools variation 1409881 1409881 . . . alleles " A G"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; known ; N/A GL192492.1 samtools variation 1409928 1409928 . . . alleles " A G"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; known ; N/A GL192492.1 samtools variation 1410691 1410691 . . . alleles " T C"; frequencies " 0.481927710843373 0.518072289156627"; depth 83 ; known ; N/A GL192492.1 samtools variation 1410766 1410766 . . . alleles " G A"; frequencies " 0.640625 0.359375"; depth 64 ; known ; N/A GL192492.1 samtools variation 1686250 1686250 . . . alleles " T C"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; unknown ; synonymous GL192492.1 samtools variation 1695302 1695302 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192492.1 samtools variation 1695619 1695619 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192492.1 samtools variation 1698138 1698138 . . . alleles " G A"; frequencies " 0.607449856733524 0.392550143266476"; depth 349 ; unknown ; N/A GL192492.1 samtools variation 1698222 1698222 . . . alleles " A T"; frequencies " 0.614814814814815 0.385185185185185"; depth 270 ; unknown ; N/A GL192492.1 samtools variation 1700432 1700432 . . . alleles " A G"; frequencies " 0.591160220994475 0.408839779005525"; depth 362 ; unknown ; synonymous GL192492.1 samtools variation 1701026 1701026 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 35 ; unknown ; N/A GL192492.1 samtools variation 1701074 1701074 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192492.1 samtools variation 1701621 1701621 . . . alleles " T C"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; known ; N/A GL192492.1 samtools variation 1701622 1701622 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192492.1 samtools variation 1703263 1703263 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192492.1 samtools variation 1712485 1712485 . . . alleles " G C"; frequencies " 0.79 0.21"; depth 100 ; known ; non-synonymous GL192492.1 samtools variation 1719035 1719035 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192492.1 samtools variation 1723045 1723045 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192492.1 samtools variation 1735444 1735444 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192492.1 samtools variation 1774068 1774068 . . . alleles " A G"; frequencies " 0.574468085106383 0.425531914893617"; depth 47 ; known ; synonymous GL192492.1 samtools variation 1777244 1777244 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; known ; synonymous GL192492.1 samtools variation 1777845 1777845 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 32 ; known ; synonymous GL192492.1 samtools variation 1792894 1792894 . . . alleles " A G"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; N/A GL192492.1 samtools variation 1800260 1800260 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192492.1 samtools variation 1808264 1808264 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; non-synonymous GL192492.1 samtools variation 1808734 1808734 . . . alleles " A C"; frequencies " 0.320299500831947 0.679700499168053"; depth 1202 ; known ; N/A GL192492.1 samtools variation 1808877 1808877 . . . alleles " G C"; frequencies " 0.717805151175812 0.282194848824188"; depth 1786 ; unknown ; N/A GL192492.1 samtools variation 1812564 1812564 . . . alleles " C A"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL192492.1 samtools variation 1820546 1820546 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192492.1 samtools variation 1820551 1820551 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192492.1 samtools variation 1820601 1820601 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192492.1 samtools variation 1821556 1821556 . . . alleles " G A"; frequencies " 0.773134328358209 0.226865671641791"; depth 335 ; unknown ; non-synonymous GL192492.1 samtools variation 1828683 1828683 . . . alleles " C T"; frequencies " 0.788571428571429 0.211428571428571"; depth 350 ; unknown ; N/A GL192492.1 samtools variation 1828729 1828729 . . . alleles " G C"; frequencies " 0.449511400651466 0.547231270358306"; depth 307 ; unknown ; N/A GL192492.1 samtools variation 1828841 1828841 . . . alleles " G A"; frequencies " 0.644859813084112 0.355140186915888"; depth 214 ; unknown ; N/A GL192492.1 samtools variation 1829441 1829441 . . . alleles " G A"; frequencies " 0.775 0.225"; depth 200 ; unknown ; synonymous GL192492.1 samtools variation 1835866 1835866 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192492.1 samtools variation 2005972 2005972 . . . alleles " T C"; frequencies " 0.662921348314607 0.337078651685393"; depth 178 ; unknown ; synonymous GL192492.1 samtools variation 2008909 2008909 . . . alleles " C T"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; unknown ; N/A GL192492.1 samtools variation 2009984 2009984 . . . alleles " C A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192492.1 samtools variation 2030138 2030138 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192492.1 samtools variation 2030139 2030139 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192492.1 samtools variation 2030618 2030618 . . . alleles " G C"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL192492.1 samtools variation 2030619 2030619 . . . alleles " G A"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL192492.1 samtools variation 2031640 2031640 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 46 ; unknown ; N/A GL192492.1 samtools variation 2031685 2031685 . . . alleles " C G"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; known ; N/A GL192492.1 samtools variation 2033562 2033562 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192492.1 samtools variation 2067450 2067450 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 40 ; unknown ; N/A GL192492.1 samtools variation 2068512 2068512 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 60 ; unknown ; N/A GL192492.1 samtools variation 2091709 2091709 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192492.1 samtools variation 2134147 2134147 . . . alleles " A C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192492.1 samtools variation 2136287 2136287 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192492.1 samtools variation 2139385 2139385 . . . alleles " G A"; frequencies " 0.317073170731707 0.682926829268293"; depth 41 ; unknown ; synonymous GL192492.1 samtools variation 2194412 2194412 . . . alleles " C T"; frequencies " 0.475 0.525"; depth 40 ; known ; N/A GL192492.1 samtools variation 2197381 2197381 . . . alleles " C T"; frequencies " 0.69743935309973 0.30256064690027"; depth 1484 ; unknown ; N/A GL192492.1 samtools variation 2198464 2198464 . . . alleles " C A"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL192492.1 samtools variation 2217924 2217924 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192492.1 samtools variation 2218168 2218168 . . . alleles " T A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192492.1 samtools variation 2222152 2222152 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192492.1 samtools variation 2224559 2224559 . . . alleles " C T"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; N/A GL192492.1 samtools variation 2230300 2230300 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192492.1 samtools variation 2230478 2230478 . . . alleles " T C"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192492.1 samtools variation 2245070 2245070 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192492.1 samtools variation 2246835 2246835 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192492.1 samtools variation 2246992 2246992 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192492.1 samtools variation 2256785 2256785 . . . alleles " T A"; frequencies " 0.25 0.75"; depth 40 ; unknown ; N/A GL192492.1 samtools variation 2276763 2276763 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 110 ; known ; N/A GL192492.1 samtools variation 2277123 2277123 . . . alleles " A G"; frequencies " 0.556390977443609 0.443609022556391"; depth 133 ; known ; synonymous GL192492.1 samtools variation 2310767 2310767 . . . alleles " G A"; frequencies " 0.607954545454545 0.392045454545455"; depth 176 ; known ; synonymous GL192492.1 samtools variation 2312123 2312123 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192492.1 samtools variation 2312153 2312153 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192492.1 samtools variation 2312412 2312412 . . . alleles " G A"; frequencies " 0.653658536585366 0.346341463414634"; depth 205 ; unknown ; non-synonymous GL192492.1 samtools variation 2313230 2313230 . . . alleles " G T"; frequencies " 0.207317073170732 0.792682926829268"; depth 82 ; known ; N/A GL192492.1 samtools variation 2313419 2313419 . . . alleles " G A"; frequencies " 0.513761467889908 0.486238532110092"; depth 109 ; known ; N/A GL192492.1 samtools variation 2313946 2313946 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192492.1 samtools variation 2314757 2314757 . . . alleles " C T"; frequencies " 0.697674418604651 0.302325581395349"; depth 43 ; known ; N/A GL192492.1 samtools variation 2315283 2315283 . . . alleles " A G"; frequencies " 0.395348837209302 0.604651162790698"; depth 43 ; known ; N/A GL192492.1 samtools variation 2315583 2315583 . . . alleles " A G"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; known ; N/A GL192492.1 samtools variation 2315735 2315735 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; N/A GL192492.1 samtools variation 2324751 2324751 . . . alleles " G A"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; unknown ; N/A GL192492.1 samtools variation 2335328 2335328 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192492.1 samtools variation 2337674 2337674 . . . alleles " C A"; frequencies " 0.716030534351145 0.283969465648855"; depth 655 ; unknown ; N/A GL192492.1 samtools variation 2342249 2342249 . . . alleles " C T"; frequencies " 0.579234972677596 0.420765027322404"; depth 366 ; unknown ; synonymous GL192492.1 samtools variation 2342363 2342363 . . . alleles " G A"; frequencies " 0.608695652173913 0.391304347826087"; depth 322 ; unknown ; synonymous GL192493.1 samtools variation 1814552 1814552 . . . alleles " G A"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; known ; non-synonymous GL192493.1 samtools variation 1833291 1833291 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192493.1 samtools variation 2264910 2264910 . . . alleles " T C"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL192493.1 samtools variation 2264945 2264945 . . . alleles " C T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; N/A GL192493.1 samtools variation 2297795 2297795 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192493.1 samtools variation 2297831 2297831 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192493.1 samtools variation 2301312 2301312 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192493.1 samtools variation 2301813 2301813 . . . alleles " T G"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192493.1 samtools variation 2303846 2303846 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192493.1 samtools variation 2304071 2304071 . . . alleles " A C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192493.1 samtools variation 2304483 2304483 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192493.1 samtools variation 2304854 2304854 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192493.1 samtools variation 2305173 2305173 . . . alleles " C T"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; known ; N/A GL192493.1 samtools variation 2328413 2328413 . . . alleles " C T"; frequencies " 0.443181818181818 0.556818181818182"; depth 88 ; known ; N/A GL192493.1 samtools variation 2329268 2329268 . . . alleles " C A"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL192493.1 samtools variation 2329664 2329664 . . . alleles " T C"; frequencies " 0.604166666666667 0.395833333333333"; depth 48 ; known ; N/A GL192493.1 samtools variation 2330436 2330436 . . . alleles " T C"; frequencies " 0.564102564102564 0.435897435897436"; depth 156 ; known ; N/A GL192493.1 samtools variation 2331064 2331064 . . . alleles " G A"; frequencies " 0.270833333333333 0.729166666666667"; depth 48 ; known ; N/A GL192493.1 samtools variation 2331913 2331913 . . . alleles " A G"; frequencies " 0.204545454545455 0.795454545454545"; depth 88 ; known ; N/A GL192493.1 samtools variation 2332885 2332885 . . . alleles " T C"; frequencies " 0.788321167883212 0.211678832116788"; depth 137 ; unknown ; N/A GL192493.1 samtools variation 2334018 2334018 . . . alleles " G T"; frequencies " 0.622641509433962 0.377358490566038"; depth 53 ; unknown ; N/A GL192493.1 samtools variation 2334827 2334827 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL192493.1 samtools variation 2335270 2335270 . . . alleles " A T"; frequencies " 0.783333333333333 0.216666666666667"; depth 60 ; known ; N/A GL192493.1 samtools variation 2335337 2335337 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 30 ; known ; N/A GL192493.1 samtools variation 2335372 2335372 . . . alleles " T C"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; known ; N/A GL192493.1 samtools variation 2337779 2337779 . . . alleles " G A"; frequencies " 0.210526315789474 0.789473684210526"; depth 38 ; unknown ; N/A GL192493.1 samtools variation 2339219 2339219 . . . alleles " A G"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; known ; N/A GL192493.1 samtools variation 2344992 2344992 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192493.1 samtools variation 2350050 2350050 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192493.1 samtools variation 2350132 2350132 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192493.1 samtools variation 2351872 2351872 . . . alleles " G A"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; known ; N/A GL192493.1 samtools variation 2353003 2353003 . . . alleles " C A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192493.1 samtools variation 2357407 2357407 . . . alleles " G T"; frequencies " 0.378048780487805 0.621951219512195"; depth 82 ; known ; synonymous GL192493.1 samtools variation 2361290 2361290 . . . alleles " A G"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL192494.1 samtools variation 121596 121596 . . . alleles " G A"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192494.1 samtools variation 246609 246609 . . . alleles " G T"; frequencies " 0.708333333333333 0.291666666666667"; depth 48 ; unknown ; N/A GL192494.1 samtools variation 253355 253355 . . . alleles " C G"; frequencies " 0.5625 0.4375"; depth 32 ; unknown ; N/A GL192494.1 samtools variation 257527 257527 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192494.1 samtools variation 312208 312208 . . . alleles " T A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192494.1 samtools variation 312243 312243 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192494.1 samtools variation 315131 315131 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192494.1 samtools variation 320571 320571 . . . alleles " T C"; frequencies " 0.454935622317597 0.545064377682403"; depth 233 ; unknown ; N/A GL192494.1 samtools variation 321385 321385 . . . alleles " C T"; frequencies " 0.512953367875648 0.487046632124352"; depth 386 ; unknown ; N/A GL192494.1 samtools variation 323881 323881 . . . alleles " T C"; frequencies " 0.38 0.62"; depth 50 ; unknown ; N/A GL192494.1 samtools variation 327137 327137 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; known ; N/A GL192494.1 samtools variation 333479 333479 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 32 ; unknown ; N/A GL192494.1 samtools variation 357490 357490 . . . alleles " C T"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192494.1 samtools variation 358354 358354 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192494.1 samtools variation 367013 367013 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192494.1 samtools variation 367608 367608 . . . alleles " C T"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192494.1 samtools variation 368278 368278 . . . alleles " G A"; frequencies " 0.245810055865922 0.754189944134078"; depth 179 ; unknown ; N/A GL192494.1 samtools variation 404914 404914 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192494.1 samtools variation 407095 407095 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192494.1 samtools variation 442032 442032 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 70 ; unknown ; non-synonymous GL192494.1 samtools variation 445292 445292 . . . alleles " C A"; frequencies " 0.36144578313253 0.63855421686747"; depth 83 ; unknown ; N/A GL192494.1 samtools variation 445363 445363 . . . alleles " A T"; frequencies " 0.456521739130435 0.543478260869565"; depth 46 ; unknown ; N/A GL192494.1 samtools variation 448076 448076 . . . alleles " G T"; frequencies " 0.436123348017621 0.563876651982379"; depth 227 ; unknown ; non-synonymous GL192494.1 samtools variation 449441 449441 . . . alleles " T G"; frequencies " 0.483870967741935 0.516129032258065"; depth 155 ; unknown ; N/A GL192494.1 samtools variation 452370 452370 . . . alleles " T G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192494.1 samtools variation 452614 452614 . . . alleles " A C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192494.1 samtools variation 506009 506009 . . . alleles " C A"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL192494.1 samtools variation 606748 606748 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192494.1 samtools variation 640677 640677 . . . alleles " A C"; frequencies " 0.779069767441861 0.22093023255814"; depth 86 ; known ; N/A GL192494.1 samtools variation 728483 728483 . . . alleles " A G"; frequencies " 0.298245614035088 0.701754385964912"; depth 57 ; known ; N/A GL192494.1 samtools variation 804750 804750 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 80 ; unknown ; N/A GL192494.1 samtools variation 805144 805144 . . . alleles " T C"; frequencies " 0.77734375 0.22265625"; depth 256 ; known ; N/A GL192494.1 samtools variation 837690 837690 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192494.1 samtools variation 869920 869920 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192494.1 samtools variation 884850 884850 . . . alleles " G T"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL192494.1 samtools variation 886172 886172 . . . alleles " G C"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192494.1 samtools variation 886548 886548 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192494.1 samtools variation 887328 887328 . . . alleles " G T"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL192494.1 samtools variation 967905 967905 . . . alleles " G A"; frequencies " 0.275862068965517 0.724137931034483"; depth 58 ; unknown ; N/A GL192494.1 samtools variation 1000218 1000218 . . . alleles " C G"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192494.1 samtools variation 1006187 1006187 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192494.1 samtools variation 1008868 1008868 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192494.1 samtools variation 1147467 1147467 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192494.1 samtools variation 1153942 1153942 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192494.1 samtools variation 1175626 1175626 . . . alleles " C G"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; known ; non-synonymous GL192494.1 samtools variation 1310870 1310870 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; synonymous GL192494.1 samtools variation 1337774 1337774 . . . alleles " C T"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; unknown ; synonymous GL192494.1 samtools variation 1375259 1375259 . . . alleles " G A"; frequencies " 0.292682926829268 0.707317073170732"; depth 41 ; unknown ; N/A GL192494.1 samtools variation 1375683 1375683 . . . alleles " T C"; frequencies " 0.206896551724138 0.793103448275862"; depth 58 ; unknown ; N/A GL192494.1 samtools variation 1375993 1375993 . . . alleles " C T"; frequencies " 0.308270676691729 0.691729323308271"; depth 133 ; unknown ; N/A GL192494.1 samtools variation 1376027 1376027 . . . alleles " G A"; frequencies " 0.290322580645161 0.709677419354839"; depth 93 ; unknown ; N/A GL192494.1 samtools variation 1376104 1376104 . . . alleles " G A"; frequencies " 0.348837209302326 0.651162790697674"; depth 86 ; unknown ; N/A GL192494.1 samtools variation 1376613 1376613 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 40 ; unknown ; N/A GL192494.1 samtools variation 1377541 1377541 . . . alleles " G T"; frequencies " 0.35 0.65"; depth 60 ; unknown ; N/A GL192494.1 samtools variation 1503100 1503100 . . . alleles " G C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192494.1 samtools variation 1562471 1562471 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 42 ; unknown ; synonymous GL192494.1 samtools variation 1595471 1595471 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192494.1 samtools variation 2290126 2290126 . . . alleles " T C"; frequencies " 0.511627906976744 0.488372093023256"; depth 86 ; known ; synonymous GL192494.1 samtools variation 2345011 2345011 . . . alleles " C T"; frequencies " 0.423076923076923 0.576923076923077"; depth 52 ; unknown ; N/A GL192495.1 samtools variation 285313 285313 . . . alleles " G A"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; known ; N/A GL192495.1 samtools variation 1436662 1436662 . . . alleles " A C"; frequencies " 0.795226130653266 0.203517587939698"; depth 796 ; unknown ; non-synonymous GL192495.1 samtools variation 2326636 2326636 . . . alleles " A G"; frequencies " 0.309041835357625 0.690958164642375"; depth 741 ; unknown ; N/A GL192496.1 samtools variation 1857416 1857416 . . . alleles " T C"; frequencies " 0.625954198473282 0.374045801526718"; depth 131 ; known ; N/A GL192496.1 samtools variation 1858422 1858422 . . . alleles " A C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL192496.1 samtools variation 1859913 1859913 . . . alleles " G C"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192496.1 samtools variation 1860861 1860861 . . . alleles " C T"; frequencies " 0.737704918032787 0.262295081967213"; depth 61 ; unknown ; N/A GL192496.1 samtools variation 1861807 1861807 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192496.1 samtools variation 1863478 1863478 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL192496.1 samtools variation 1952698 1952698 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 60 ; unknown ; synonymous GL192496.1 samtools variation 1953466 1953466 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL192497.1 samtools variation 124886 124886 . . . alleles " T C"; frequencies " 0.700934579439252 0.299065420560748"; depth 107 ; unknown ; synonymous GL192497.1 samtools variation 157870 157870 . . . alleles " G C"; frequencies " 0.369565217391304 0.630434782608696"; depth 46 ; unknown ; N/A GL192497.1 samtools variation 230517 230517 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192497.1 samtools variation 247615 247615 . . . alleles " C T"; frequencies " 0.492424242424242 0.507575757575758"; depth 132 ; unknown ; N/A GL192497.1 samtools variation 289117 289117 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192497.1 samtools variation 309228 309228 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; synonymous GL192497.1 samtools variation 316269 316269 . . . alleles " T C"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; unknown ; N/A GL192497.1 samtools variation 317329 317329 . . . alleles " G T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192497.1 samtools variation 317656 317656 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192497.1 samtools variation 317835 317835 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192497.1 samtools variation 318236 318236 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192497.1 samtools variation 319708 319708 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 25 ; unknown ; non-synonymous GL192497.1 samtools variation 319730 319730 . . . alleles " A G"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; non-synonymous GL192497.1 samtools variation 443096 443096 . . . alleles " C A"; frequencies " 0.794871794871795 0.205128205128205"; depth 78 ; unknown ; N/A GL192497.1 samtools variation 452163 452163 . . . alleles " G T"; frequencies " 0.51010101010101 0.48989898989899"; depth 198 ; unknown ; N/A GL192497.1 samtools variation 452247 452247 . . . alleles " G A"; frequencies " 0.640287769784173 0.359712230215827"; depth 139 ; unknown ; N/A GL192497.1 samtools variation 452280 452280 . . . alleles " C A"; frequencies " 0.649350649350649 0.350649350649351"; depth 231 ; unknown ; N/A GL192497.1 samtools variation 454983 454983 . . . alleles " C G"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192497.1 samtools variation 456217 456217 . . . alleles " G T"; frequencies " 0.603513174404015 0.396486825595985"; depth 797 ; unknown ; synonymous GL192497.1 samtools variation 461191 461191 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192497.1 samtools variation 461715 461715 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192497.1 samtools variation 463382 463382 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192497.1 samtools variation 463642 463642 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192497.1 samtools variation 543934 543934 . . . alleles " T C"; frequencies " 0.753623188405797 0.246376811594203"; depth 69 ; known ; N/A GL192497.1 samtools variation 556906 556906 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192497.1 samtools variation 563545 563545 . . . alleles " C T"; frequencies " 0.617021276595745 0.382978723404255"; depth 47 ; unknown ; synonymous GL192497.1 samtools variation 568771 568771 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192497.1 samtools variation 570198 570198 . . . alleles " G A"; frequencies " 0.527027027027027 0.472972972972973"; depth 74 ; unknown ; N/A GL192497.1 samtools variation 570436 570436 . . . alleles " C T"; frequencies " 0.581081081081081 0.418918918918919"; depth 74 ; unknown ; N/A GL192497.1 samtools variation 574522 574522 . . . alleles " A G"; frequencies " 0.425925925925926 0.574074074074074"; depth 54 ; known ; N/A GL192497.1 samtools variation 574626 574626 . . . alleles " T C"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; known ; N/A GL192497.1 samtools variation 574639 574639 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 24 ; known ; N/A GL192497.1 samtools variation 576928 576928 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192497.1 samtools variation 577926 577926 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192497.1 samtools variation 578377 578377 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL192497.1 samtools variation 578444 578444 . . . alleles " T G"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL192497.1 samtools variation 578886 578886 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192497.1 samtools variation 580258 580258 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL192497.1 samtools variation 580388 580388 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL192497.1 samtools variation 581174 581174 . . . alleles " A C"; frequencies " 0.233333333333333 0.766666666666667"; depth 30 ; known ; N/A GL192497.1 samtools variation 581198 581198 . . . alleles " C T"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL192497.1 samtools variation 593927 593927 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; synonymous GL192497.1 samtools variation 598319 598319 . . . alleles " G A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192497.1 samtools variation 610035 610035 . . . alleles " G A"; frequencies " 0.340909090909091 0.659090909090909"; depth 44 ; unknown ; N/A GL192497.1 samtools variation 858563 858563 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192497.1 samtools variation 1081506 1081506 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192497.1 samtools variation 1096578 1096578 . . . alleles " C A"; frequencies " 0.584415584415584 0.402597402597403"; depth 77 ; known ; N/A GL192497.1 samtools variation 1098716 1098716 . . . alleles " G A"; frequencies " 0.34375 0.65625"; depth 32 ; unknown ; N/A GL192497.1 samtools variation 1220161 1220161 . . . alleles " G A"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192497.1 samtools variation 1229364 1229364 . . . alleles " C T"; frequencies " 0.242857142857143 0.757142857142857"; depth 70 ; unknown ; synonymous GL192497.1 samtools variation 1465930 1465930 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192497.1 samtools variation 1481761 1481761 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192497.1 samtools variation 1486192 1486192 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192497.1 samtools variation 1486296 1486296 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192497.1 samtools variation 1486317 1486317 . . . alleles " C G"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL192497.1 samtools variation 1486391 1486391 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192497.1 samtools variation 1488842 1488842 . . . alleles " A G"; frequencies " 0.558139534883721 0.441860465116279"; depth 43 ; known ; N/A GL192497.1 samtools variation 1567680 1567680 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192497.1 samtools variation 1625603 1625603 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192497.1 samtools variation 2059787 2059787 . . . alleles " A T"; frequencies " 0.524096385542169 0.475903614457831"; depth 166 ; unknown ; synonymous GL192497.1 samtools variation 2070331 2070331 . . . alleles " G A"; frequencies " 0.484944532488114 0.515055467511886"; depth 631 ; unknown ; synonymous GL192497.1 samtools variation 2070890 2070890 . . . alleles " G A"; frequencies " 0.420731707317073 0.579268292682927"; depth 164 ; unknown ; N/A GL192497.1 samtools variation 2072908 2072908 . . . alleles " C T"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; unknown ; N/A GL192497.1 samtools variation 2073185 2073185 . . . alleles " A T"; frequencies " 0.720930232558139 0.27906976744186"; depth 215 ; unknown ; N/A GL192497.1 samtools variation 2073338 2073338 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 95 ; unknown ; N/A GL192497.1 samtools variation 2073890 2073890 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192497.1 samtools variation 2074445 2074445 . . . alleles " A G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192497.1 samtools variation 2075220 2075220 . . . alleles " C T"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192497.1 samtools variation 2077720 2077720 . . . alleles " C T"; frequencies " 0.695322376738306 0.304677623261694"; depth 791 ; unknown ; N/A GL192497.1 samtools variation 2142033 2142033 . . . alleles " G A"; frequencies " 0.641414141414141 0.358585858585859"; depth 198 ; unknown ; N/A GL192497.1 samtools variation 2142687 2142687 . . . alleles " T C"; frequencies " 0.784615384615385 0.215384615384615"; depth 65 ; known ; N/A GL192497.1 samtools variation 2143658 2143658 . . . alleles " G A"; frequencies " 0.647798742138365 0.352201257861635"; depth 159 ; unknown ; N/A GL192497.1 samtools variation 2145276 2145276 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL192497.1 samtools variation 2145404 2145404 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192497.1 samtools variation 2146622 2146622 . . . alleles " A G"; frequencies " 0.226666666666667 0.773333333333333"; depth 75 ; known ; N/A GL192497.1 samtools variation 2147027 2147027 . . . alleles " G A"; frequencies " 0.682333873581848 0.317666126418152"; depth 617 ; unknown ; synonymous GL192497.1 samtools variation 2326846 2326846 . . . alleles " C T"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; unknown ; non-synonymous GL192497.1 samtools variation 2327649 2327649 . . . alleles " C T"; frequencies " 0.775 0.225"; depth 40 ; unknown ; N/A GL192497.1 samtools variation 2340168 2340168 . . . alleles " C T"; frequencies " 0.743589743589744 0.256410256410256"; depth 78 ; unknown ; synonymous GL192498.1 samtools variation 19806 19806 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 69 ; unknown ; synonymous GL192498.1 samtools variation 25028 25028 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192498.1 samtools variation 244413 244413 . . . alleles " A T"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; known ; N/A GL192498.1 samtools variation 244912 244912 . . . alleles " G A"; frequencies " 0.774147727272727 0.225852272727273"; depth 704 ; unknown ; N/A GL192498.1 samtools variation 261749 261749 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192498.1 samtools variation 262582 262582 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL192498.1 samtools variation 263596 263596 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192498.1 samtools variation 264800 264800 . . . alleles " C T"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL192498.1 samtools variation 265056 265056 . . . alleles " C A"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; known ; N/A GL192498.1 samtools variation 265310 265310 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; known ; N/A GL192498.1 samtools variation 265466 265466 . . . alleles " A C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192498.1 samtools variation 266846 266846 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192498.1 samtools variation 266989 266989 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192498.1 samtools variation 267277 267277 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192498.1 samtools variation 267384 267384 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL192498.1 samtools variation 267545 267545 . . . alleles " T C"; frequencies " 0.24390243902439 0.75609756097561"; depth 41 ; unknown ; N/A GL192498.1 samtools variation 268194 268194 . . . alleles " C T"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; unknown ; non-synonymous GL192498.1 samtools variation 268195 268195 . . . alleles " A G"; frequencies " 0.371428571428571 0.628571428571429"; depth 35 ; unknown ; synonymous GL192498.1 samtools variation 441937 441937 . . . alleles " T G"; frequencies " 0.32 0.68"; depth 25 ; known ; N/A GL192498.1 samtools variation 442051 442051 . . . alleles " G A"; frequencies " 0.358490566037736 0.641509433962264"; depth 53 ; known ; N/A GL192498.1 samtools variation 443893 443893 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192498.1 samtools variation 443979 443979 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192498.1 samtools variation 554424 554424 . . . alleles " G A"; frequencies " 0.776119402985075 0.223880597014925"; depth 67 ; unknown ; non-synonymous GL192498.1 samtools variation 1174222 1174222 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192498.1 samtools variation 1337924 1337924 . . . alleles " C T"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192498.1 samtools variation 1433321 1433321 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192498.1 samtools variation 1556047 1556047 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; synonymous GL192498.1 samtools variation 2026605 2026605 . . . alleles " A T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192499.1 samtools variation 346998 346998 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192499.1 samtools variation 385769 385769 . . . alleles " T G"; frequencies " 0.446043165467626 0.553956834532374"; depth 139 ; unknown ; N/A GL192499.1 samtools variation 397385 397385 . . . alleles " C T"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL192499.1 samtools variation 398390 398390 . . . alleles " T C"; frequencies " 0.341463414634146 0.658536585365854"; depth 41 ; unknown ; N/A GL192499.1 samtools variation 407917 407917 . . . alleles " G A"; frequencies " 0.664335664335664 0.335664335664336"; depth 143 ; unknown ; N/A GL192499.1 samtools variation 423445 423445 . . . alleles " C T"; frequencies " 0.644444444444444 0.355555555555556"; depth 45 ; unknown ; N/A GL192499.1 samtools variation 426814 426814 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192499.1 samtools variation 827612 827612 . . . alleles " G T"; frequencies " 0.477272727272727 0.522727272727273"; depth 44 ; unknown ; N/A GL192499.1 samtools variation 827682 827682 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 44 ; unknown ; N/A GL192499.1 samtools variation 1809421 1809421 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192499.1 samtools variation 1834050 1834050 . . . alleles " G A"; frequencies " 0.383116883116883 0.616883116883117"; depth 154 ; known ; synonymous GL192499.1 samtools variation 1834096 1834096 . . . alleles " C T"; frequencies " 0.403726708074534 0.596273291925466"; depth 161 ; known ; N/A GL192500.1 samtools variation 289607 289607 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192500.1 samtools variation 289997 289997 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192500.1 samtools variation 311073 311073 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192500.1 samtools variation 378825 378825 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192501.1 samtools variation 1017145 1017145 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; non-synonymous GL192501.1 samtools variation 1043936 1043936 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192501.1 samtools variation 1134726 1134726 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192501.1 samtools variation 1134763 1134763 . . . alleles " G C"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192501.1 samtools variation 1135716 1135716 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192501.1 samtools variation 1804951 1804951 . . . alleles " C A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192501.1 samtools variation 1806515 1806515 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 35 ; known ; N/A GL192501.1 samtools variation 1829211 1829211 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL192501.1 samtools variation 1829858 1829858 . . . alleles " T A"; frequencies " 0.303030303030303 0.696969696969697"; depth 33 ; known ; N/A GL192501.1 samtools variation 1829926 1829926 . . . alleles " G C"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; known ; N/A GL192501.1 samtools variation 1829966 1829966 . . . alleles " T G"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL192501.1 samtools variation 1830170 1830170 . . . alleles " G T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192501.1 samtools variation 1833108 1833108 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192501.1 samtools variation 1833196 1833196 . . . alleles " C A"; frequencies " 0.59375 0.40625"; depth 32 ; known ; N/A GL192501.1 samtools variation 1860222 1860222 . . . alleles " C T"; frequencies " 0.723897911832947 0.276102088167053"; depth 431 ; known ; synonymous GL192501.1 samtools variation 1893371 1893371 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192501.1 samtools variation 1899380 1899380 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192501.1 samtools variation 1902085 1902085 . . . alleles " T G"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL192501.1 samtools variation 1914427 1914427 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192501.1 samtools variation 1915116 1915116 . . . alleles " T G"; frequencies " 0.640776699029126 0.359223300970874"; depth 103 ; known ; N/A GL192501.1 samtools variation 1918461 1918461 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 104 ; known ; N/A GL192501.1 samtools variation 1919339 1919339 . . . alleles " C T"; frequencies " 0.446428571428571 0.553571428571429"; depth 224 ; known ; N/A GL192501.1 samtools variation 1921585 1921585 . . . alleles " A G"; frequencies " 0.673913043478261 0.326086956521739"; depth 92 ; unknown ; N/A GL192501.1 samtools variation 1923528 1923528 . . . alleles " C T"; frequencies " 0.792452830188679 0.207547169811321"; depth 265 ; unknown ; N/A GL192501.1 samtools variation 1930392 1930392 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192501.1 samtools variation 1931523 1931523 . . . alleles " A T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192501.1 samtools variation 1950273 1950273 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192501.1 samtools variation 1953542 1953542 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192501.1 samtools variation 2017964 2017964 . . . alleles " T C"; frequencies " 0.283018867924528 0.716981132075472"; depth 53 ; known ; synonymous GL192501.1 samtools variation 2020074 2020074 . . . alleles " T C"; frequencies " 0.331491712707182 0.668508287292818"; depth 181 ; known ; N/A GL192501.1 samtools variation 2020160 2020160 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; known ; N/A GL192501.1 samtools variation 2020208 2020208 . . . alleles " G A"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; known ; N/A GL192501.1 samtools variation 2020253 2020253 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 45 ; unknown ; N/A GL192501.1 samtools variation 2021682 2021682 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 56 ; known ; N/A GL192501.1 samtools variation 2021744 2021744 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192501.1 samtools variation 2021775 2021775 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192502.1 samtools variation 526369 526369 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; non-synonymous GL192502.1 samtools variation 529077 529077 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; synonymous GL192502.1 samtools variation 533651 533651 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192502.1 samtools variation 1313078 1313078 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 54 ; known ; non-synonymous GL192502.1 samtools variation 1340641 1340641 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192502.1 samtools variation 1341761 1341761 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; N/A GL192503.1 samtools variation 75841 75841 . . . alleles " A C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192503.1 samtools variation 607915 607915 . . . alleles " C G"; frequencies " 0.289855072463768 0.710144927536232"; depth 207 ; unknown ; synonymous GL192503.1 samtools variation 622513 622513 . . . alleles " G A"; frequencies " 0.327868852459016 0.672131147540984"; depth 366 ; unknown ; N/A GL192503.1 samtools variation 691323 691323 . . . alleles " G A"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; known ; N/A GL192503.1 samtools variation 723481 723481 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; unknown ; N/A GL192503.1 samtools variation 771081 771081 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192503.1 samtools variation 772438 772438 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192503.1 samtools variation 1151272 1151272 . . . alleles " C G"; frequencies " 0.65 0.25"; depth 20 ; unknown ; N/A GL192503.1 samtools variation 1152613 1152613 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192503.1 samtools variation 1377743 1377743 . . . alleles " G A"; frequencies " 0.761061946902655 0.238938053097345"; depth 113 ; unknown ; synonymous GL192503.1 samtools variation 1378235 1378235 . . . alleles " G A"; frequencies " 0.422535211267606 0.577464788732394"; depth 142 ; unknown ; synonymous GL192503.1 samtools variation 1433170 1433170 . . . alleles " G A"; frequencies " 0.725490196078431 0.274509803921569"; depth 102 ; unknown ; synonymous GL192503.1 samtools variation 1434465 1434465 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; N/A GL192503.1 samtools variation 1434856 1434856 . . . alleles " C T"; frequencies " 0.621359223300971 0.378640776699029"; depth 103 ; unknown ; N/A GL192503.1 samtools variation 1435150 1435150 . . . alleles " T G"; frequencies " 0.691358024691358 0.308641975308642"; depth 81 ; unknown ; N/A GL192504.1 samtools variation 14842 14842 . . . alleles " T G"; frequencies " 0.623287671232877 0.376712328767123"; depth 146 ; known ; N/A GL192504.1 samtools variation 15061 15061 . . . alleles " G C"; frequencies " 0.419354838709677 0.580645161290323"; depth 155 ; known ; N/A GL192504.1 samtools variation 15218 15218 . . . alleles " C T"; frequencies " 0.405660377358491 0.594339622641509"; depth 106 ; known ; synonymous GL192504.1 samtools variation 15542 15542 . . . alleles " T C"; frequencies " 0.308571428571429 0.691428571428571"; depth 175 ; known ; non-synonymous GL192504.1 samtools variation 15644 15644 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192504.1 samtools variation 17463 17463 . . . alleles " C T"; frequencies " 0.503401360544218 0.496598639455782"; depth 147 ; known ; non-synonymous GL192504.1 samtools variation 25405 25405 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192504.1 samtools variation 81523 81523 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 209 ; unknown ; non-synonymous GL192504.1 samtools variation 722797 722797 . . . alleles " T C"; frequencies " 0.397260273972603 0.602739726027397"; depth 73 ; unknown ; N/A GL192504.1 samtools variation 756895 756895 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192504.1 samtools variation 757030 757030 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 48 ; unknown ; N/A GL192504.1 samtools variation 759014 759014 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192504.1 samtools variation 1114969 1114969 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 42 ; unknown ; N/A GL192504.1 samtools variation 1120372 1120372 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192504.1 samtools variation 1210644 1210644 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192504.1 samtools variation 1221345 1221345 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; N/A GL192504.1 samtools variation 1225732 1225732 . . . alleles " T A"; frequencies " 0.318181818181818 0.681818181818182"; depth 110 ; known ; N/A GL192504.1 samtools variation 1225916 1225916 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; known ; N/A GL192504.1 samtools variation 1242385 1242385 . . . alleles " C T"; frequencies " 0.688888888888889 0.311111111111111"; depth 45 ; unknown ; N/A GL192504.1 samtools variation 1242694 1242694 . . . alleles " A G"; frequencies " 0.316831683168317 0.683168316831683"; depth 101 ; unknown ; N/A GL192504.1 samtools variation 1302358 1302358 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192504.1 samtools variation 1308425 1308425 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; non-synonymous GL192504.1 samtools variation 1334391 1334391 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192504.1 samtools variation 1337683 1337683 . . . alleles " G A"; frequencies " 0.512820512820513 0.487179487179487"; depth 156 ; unknown ; N/A GL192504.1 samtools variation 1339932 1339932 . . . alleles " T C"; frequencies " 0.682352941176471 0.317647058823529"; depth 85 ; unknown ; N/A GL192504.1 samtools variation 1340720 1340720 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 84 ; unknown ; N/A GL192504.1 samtools variation 1343137 1343137 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192504.1 samtools variation 1343986 1343986 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192504.1 samtools variation 1348283 1348283 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192504.1 samtools variation 1348371 1348371 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192504.1 samtools variation 1351378 1351378 . . . alleles " G T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192504.1 samtools variation 1421095 1421095 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192504.1 samtools variation 1493650 1493650 . . . alleles " C T"; frequencies " 0.730337078651685 0.269662921348315"; depth 178 ; unknown ; N/A GL192504.1 samtools variation 1495170 1495170 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192504.1 samtools variation 1497191 1497191 . . . alleles " G A"; frequencies " 0.547619047619048 0.452380952380952"; depth 42 ; unknown ; N/A GL192504.1 samtools variation 1499628 1499628 . . . alleles " T C"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; N/A GL192504.1 samtools variation 1502134 1502134 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192504.1 samtools variation 1506849 1506849 . . . alleles " T C"; frequencies " 0.600790513833992 0.399209486166008"; depth 253 ; unknown ; synonymous GL192504.1 samtools variation 1544433 1544433 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192504.1 samtools variation 1544758 1544758 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192504.1 samtools variation 1546053 1546053 . . . alleles " A G"; frequencies " 0.342105263157895 0.657894736842105"; depth 38 ; unknown ; N/A GL192504.1 samtools variation 1546121 1546121 . . . alleles " G A"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; unknown ; N/A GL192504.1 samtools variation 1546359 1546359 . . . alleles " A G"; frequencies " 0.396825396825397 0.603174603174603"; depth 63 ; unknown ; N/A GL192504.1 samtools variation 1546446 1546446 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192504.1 samtools variation 1546480 1546480 . . . alleles " A G"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL192504.1 samtools variation 1554307 1554307 . . . alleles " A T"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192504.1 samtools variation 1555596 1555596 . . . alleles " A T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192504.1 samtools variation 1563776 1563776 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192504.1 samtools variation 1574323 1574323 . . . alleles " A G"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; N/A GL192504.1 samtools variation 1574903 1574903 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192504.1 samtools variation 1574905 1574905 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192504.1 samtools variation 1578454 1578454 . . . alleles " T A"; frequencies " 0.573770491803279 0.426229508196721"; depth 61 ; unknown ; N/A GL192504.1 samtools variation 1579958 1579958 . . . alleles " G C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192504.1 samtools variation 1588036 1588036 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 38 ; unknown ; N/A GL192504.1 samtools variation 1588092 1588092 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL192504.1 samtools variation 1596955 1596955 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; unknown ; N/A GL192504.1 samtools variation 1596965 1596965 . . . alleles " G T"; frequencies " 0.760869565217391 0.239130434782609"; depth 46 ; unknown ; N/A GL192504.1 samtools variation 1597012 1597012 . . . alleles " G A"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL192504.1 samtools variation 1602025 1602025 . . . alleles " A C"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; unknown ; N/A GL192504.1 samtools variation 1603878 1603878 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192504.1 samtools variation 1603879 1603879 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192504.1 samtools variation 1604379 1604379 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192504.1 samtools variation 1614356 1614356 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192504.1 samtools variation 1616117 1616117 . . . alleles " C A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192504.1 samtools variation 1616172 1616172 . . . alleles " A G"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL192504.1 samtools variation 1619287 1619287 . . . alleles " A T"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL192504.1 samtools variation 1675436 1675436 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192504.1 samtools variation 1678853 1678853 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192505.1 samtools variation 559012 559012 . . . alleles " G A"; frequencies " 0.780821917808219 0.219178082191781"; depth 73 ; unknown ; synonymous GL192505.1 samtools variation 604111 604111 . . . alleles " T G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192505.1 samtools variation 1026296 1026296 . . . alleles " T G"; frequencies " 0.425373134328358 0.574626865671642"; depth 134 ; unknown ; N/A GL192505.1 samtools variation 1026929 1026929 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL192505.1 samtools variation 1267321 1267321 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192505.1 samtools variation 1531600 1531600 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 24 ; unknown ; synonymous GL192505.1 samtools variation 1600166 1600166 . . . alleles " C G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; non-synonymous GL192505.1 samtools variation 1613733 1613733 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192505.1 samtools variation 1617794 1617794 . . . alleles " C G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192505.1 samtools variation 1628721 1628721 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192505.1 samtools variation 1668435 1668435 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192505.1 samtools variation 1993460 1993460 . . . alleles " T A"; frequencies " 0.338235294117647 0.661764705882353"; depth 68 ; unknown ; synonymous GL192505.1 samtools variation 2049687 2049687 . . . alleles " T C"; frequencies " 0.640287769784173 0.359712230215827"; depth 139 ; unknown ; synonymous GL192505.1 samtools variation 2049753 2049753 . . . alleles " T C"; frequencies " 0.638461538461538 0.361538461538462"; depth 130 ; unknown ; synonymous GL192505.1 samtools variation 2190761 2190761 . . . alleles " C G"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL192505.1 samtools variation 2191398 2191398 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192505.1 samtools variation 2202595 2202595 . . . alleles " T A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192505.1 samtools variation 2205148 2205148 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL192505.1 samtools variation 2207607 2207607 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192505.1 samtools variation 2250515 2250515 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL192506.1 samtools variation 992888 992888 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 99 ; known ; synonymous GL192506.1 samtools variation 1003836 1003836 . . . alleles " C T"; frequencies " 0.77027027027027 0.22972972972973"; depth 74 ; unknown ; N/A GL192507.1 samtools variation 198978 198978 . . . alleles " C T"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL192507.1 samtools variation 205985 205985 . . . alleles " G A"; frequencies " 0.5 0.492063492063492"; depth 126 ; known ; non-synonymous GL192507.1 samtools variation 206047 206047 . . . alleles " A G"; frequencies " 0.474137931034483 0.525862068965517"; depth 116 ; known ; synonymous GL192507.1 samtools variation 206413 206413 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 77 ; known ; non-synonymous GL192507.1 samtools variation 210534 210534 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192507.1 samtools variation 243613 243613 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192507.1 samtools variation 244152 244152 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192507.1 samtools variation 252066 252066 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192507.1 samtools variation 371376 371376 . . . alleles " C T"; frequencies " 0.510204081632653 0.489795918367347"; depth 49 ; known ; N/A GL192507.1 samtools variation 374658 374658 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192507.1 samtools variation 388381 388381 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; known ; non-synonymous GL192507.1 samtools variation 402848 402848 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; non-synonymous GL192507.1 samtools variation 402881 402881 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; non-synonymous GL192507.1 samtools variation 403091 403091 . . . alleles " T C"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; non-synonymous GL192507.1 samtools variation 403691 403691 . . . alleles " T C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; non-synonymous GL192507.1 samtools variation 703139 703139 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192507.1 samtools variation 703465 703465 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192507.1 samtools variation 787264 787264 . . . alleles " C T"; frequencies " 0.28 0.72"; depth 150 ; known ; N/A GL192507.1 samtools variation 787644 787644 . . . alleles " C T"; frequencies " 0.525252525252525 0.474747474747475"; depth 99 ; known ; N/A GL192507.1 samtools variation 790195 790195 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192507.1 samtools variation 796868 796868 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192507.1 samtools variation 798298 798298 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 60 ; known ; synonymous GL192507.1 samtools variation 799319 799319 . . . alleles " T C"; frequencies " 0.365079365079365 0.634920634920635"; depth 126 ; known ; non-synonymous GL192507.1 samtools variation 817489 817489 . . . alleles " G T"; frequencies " 0.773333333333333 0.226666666666667"; depth 75 ; known ; N/A GL192507.1 samtools variation 818095 818095 . . . alleles " T G"; frequencies " 0.285714285714286 0.714285714285714"; depth 84 ; known ; N/A GL192507.1 samtools variation 819388 819388 . . . alleles " T C"; frequencies " 0.725806451612903 0.274193548387097"; depth 62 ; unknown ; N/A GL192507.1 samtools variation 836413 836413 . . . alleles " C A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL192507.1 samtools variation 841862 841862 . . . alleles " C T"; frequencies " 0.527777777777778 0.472222222222222"; depth 72 ; known ; non-synonymous GL192507.1 samtools variation 844609 844609 . . . alleles " C A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192507.1 samtools variation 845219 845219 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 66 ; known ; N/A GL192507.1 samtools variation 845752 845752 . . . alleles " A T"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; known ; N/A GL192507.1 samtools variation 846342 846342 . . . alleles " A T"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; known ; N/A GL192507.1 samtools variation 846531 846531 . . . alleles " A G"; frequencies " 0.331896551724138 0.668103448275862"; depth 232 ; known ; N/A GL192507.1 samtools variation 846652 846652 . . . alleles " G A"; frequencies " 0.347826086956522 0.652173913043478"; depth 161 ; known ; N/A GL192507.1 samtools variation 846748 846748 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 119 ; known ; N/A GL192507.1 samtools variation 849238 849238 . . . alleles " T G"; frequencies " 0.725 0.275"; depth 40 ; known ; N/A GL192507.1 samtools variation 849408 849408 . . . alleles " C T"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192507.1 samtools variation 849437 849437 . . . alleles " T A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192507.1 samtools variation 849607 849607 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192507.1 samtools variation 850083 850083 . . . alleles " G C"; frequencies " 0.32 0.68"; depth 25 ; known ; N/A GL192507.1 samtools variation 850777 850777 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192507.1 samtools variation 878516 878516 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192507.1 samtools variation 887613 887613 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192507.1 samtools variation 889839 889839 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192507.1 samtools variation 914547 914547 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL192507.1 samtools variation 925956 925956 . . . alleles " T C"; frequencies " 0.372549019607843 0.627450980392157"; depth 51 ; known ; N/A GL192507.1 samtools variation 1021012 1021012 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192507.1 samtools variation 1031860 1031860 . . . alleles " G A"; frequencies " 0.685714285714286 0.314285714285714"; depth 70 ; known ; N/A GL192507.1 samtools variation 1032296 1032296 . . . alleles " T G"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; known ; N/A GL192507.1 samtools variation 1056071 1056071 . . . alleles " G T"; frequencies " 0.651162790697674 0.348837209302326"; depth 129 ; known ; N/A GL192507.1 samtools variation 1067849 1067849 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192507.1 samtools variation 1074127 1074127 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192507.1 samtools variation 1082726 1082726 . . . alleles " A C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192507.1 samtools variation 1084412 1084412 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL192507.1 samtools variation 1084854 1084854 . . . alleles " A G"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; known ; N/A GL192507.1 samtools variation 1104062 1104062 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192507.1 samtools variation 1106447 1106447 . . . alleles " T C"; frequencies " 0.206349206349206 0.793650793650794"; depth 63 ; known ; N/A GL192507.1 samtools variation 1107584 1107584 . . . alleles " T C"; frequencies " 0.675471698113208 0.324528301886792"; depth 265 ; known ; N/A GL192507.1 samtools variation 1108475 1108475 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192507.1 samtools variation 1109813 1109813 . . . alleles " T G"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; known ; N/A GL192507.1 samtools variation 1110242 1110242 . . . alleles " G C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL192507.1 samtools variation 1110453 1110453 . . . alleles " A C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192507.1 samtools variation 1110922 1110922 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192507.1 samtools variation 1112175 1112175 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192507.1 samtools variation 1112228 1112228 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192507.1 samtools variation 1115239 1115239 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192507.1 samtools variation 1115603 1115603 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192507.1 samtools variation 1115816 1115816 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 40 ; known ; N/A GL192507.1 samtools variation 1116775 1116775 . . . alleles " C T"; frequencies " 0.472727272727273 0.527272727272727"; depth 110 ; known ; N/A GL192507.1 samtools variation 1117714 1117714 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; synonymous GL192507.1 samtools variation 1150073 1150073 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; known ; non-synonymous GL192507.1 samtools variation 1151200 1151200 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; synonymous GL192507.1 samtools variation 1178692 1178692 . . . alleles " T A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192507.1 samtools variation 1179393 1179393 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192507.1 samtools variation 1179693 1179693 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192507.1 samtools variation 1179727 1179727 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192507.1 samtools variation 1384549 1384549 . . . alleles " C G"; frequencies " 0.354838709677419 0.645161290322581"; depth 62 ; known ; N/A GL192507.1 samtools variation 1385933 1385933 . . . alleles " G C"; frequencies " 0.51219512195122 0.48780487804878"; depth 41 ; unknown ; N/A GL192507.1 samtools variation 1386566 1386566 . . . alleles " C G"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; N/A GL192507.1 samtools variation 1387241 1387241 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192507.1 samtools variation 1387392 1387392 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192507.1 samtools variation 1401633 1401633 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192507.1 samtools variation 1409431 1409431 . . . alleles " A G"; frequencies " 0.48 0.52"; depth 50 ; known ; N/A GL192507.1 samtools variation 1412112 1412112 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 46 ; known ; N/A GL192507.1 samtools variation 1438001 1438001 . . . alleles " C A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192507.1 samtools variation 1447667 1447667 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192507.1 samtools variation 1622947 1622947 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192507.1 samtools variation 1699941 1699941 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192507.1 samtools variation 1707741 1707741 . . . alleles " T C"; frequencies " 0.711111111111111 0.288888888888889"; depth 135 ; unknown ; N/A GL192507.1 samtools variation 1745983 1745983 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192507.1 samtools variation 2047456 2047456 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192508.1 samtools variation 277613 277613 . . . alleles " G A"; frequencies " 0.252747252747253 0.747252747252747"; depth 91 ; known ; N/A GL192508.1 samtools variation 347790 347790 . . . alleles " C T"; frequencies " 0.30188679245283 0.69811320754717"; depth 106 ; known ; N/A GL192508.1 samtools variation 375737 375737 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192508.1 samtools variation 1063180 1063180 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL192508.1 samtools variation 1086080 1086080 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 95 ; unknown ; N/A GL192508.1 samtools variation 1086136 1086136 . . . alleles " A C"; frequencies " 0.692857142857143 0.307142857142857"; depth 140 ; unknown ; N/A GL192508.1 samtools variation 1086649 1086649 . . . alleles " A T"; frequencies " 0.68695652173913 0.31304347826087"; depth 115 ; unknown ; N/A GL192508.1 samtools variation 1086697 1086697 . . . alleles " C T"; frequencies " 0.656934306569343 0.343065693430657"; depth 137 ; unknown ; N/A GL192508.1 samtools variation 1087150 1087150 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 68 ; unknown ; N/A GL192508.1 samtools variation 1087164 1087164 . . . alleles " T C"; frequencies " 0.672131147540984 0.327868852459016"; depth 61 ; unknown ; N/A GL192508.1 samtools variation 1087809 1087809 . . . alleles " A G"; frequencies " 0.677083333333333 0.322916666666667"; depth 96 ; unknown ; N/A GL192508.1 samtools variation 1087903 1087903 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192508.1 samtools variation 1088178 1088178 . . . alleles " C T"; frequencies " 0.771653543307087 0.228346456692913"; depth 127 ; unknown ; N/A GL192508.1 samtools variation 1088330 1088330 . . . alleles " C T"; frequencies " 0.720720720720721 0.279279279279279"; depth 111 ; unknown ; N/A GL192508.1 samtools variation 1088481 1088481 . . . alleles " T C"; frequencies " 0.682539682539683 0.317460317460317"; depth 63 ; unknown ; N/A GL192508.1 samtools variation 1088859 1088859 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 58 ; unknown ; N/A GL192508.1 samtools variation 1089311 1089311 . . . alleles " A G"; frequencies " 0.787037037037037 0.212962962962963"; depth 108 ; unknown ; N/A GL192508.1 samtools variation 1089316 1089316 . . . alleles " C T"; frequencies " 0.779816513761468 0.220183486238532"; depth 109 ; unknown ; N/A GL192508.1 samtools variation 1089377 1089377 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 72 ; unknown ; N/A GL192508.1 samtools variation 1120518 1120518 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; synonymous GL192508.1 samtools variation 1140632 1140632 . . . alleles " C G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; non-synonymous GL192508.1 samtools variation 1153800 1153800 . . . alleles " T C"; frequencies " 0.747663551401869 0.252336448598131"; depth 107 ; unknown ; synonymous GL192508.1 samtools variation 1163942 1163942 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; synonymous GL192508.1 samtools variation 1226062 1226062 . . . alleles " A G"; frequencies " 0.342281879194631 0.657718120805369"; depth 149 ; known ; N/A GL192509.1 samtools variation 8689 8689 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192509.1 samtools variation 171761 171761 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192509.1 samtools variation 815172 815172 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192509.1 samtools variation 916892 916892 . . . alleles " C G"; frequencies " 0.48135593220339 0.516949152542373"; depth 590 ; known ; synonymous GL192509.1 samtools variation 930751 930751 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192509.1 samtools variation 934477 934477 . . . alleles " C A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192509.1 samtools variation 961820 961820 . . . alleles " A G"; frequencies " 0.734513274336283 0.265486725663717"; depth 113 ; unknown ; N/A GL192509.1 samtools variation 961960 961960 . . . alleles " T C"; frequencies " 0.638297872340426 0.361702127659574"; depth 47 ; unknown ; N/A GL192509.1 samtools variation 962414 962414 . . . alleles " A G"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; unknown ; N/A GL192509.1 samtools variation 962493 962493 . . . alleles " T G"; frequencies " 0.484126984126984 0.515873015873016"; depth 126 ; unknown ; N/A GL192509.1 samtools variation 962613 962613 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 126 ; unknown ; N/A GL192509.1 samtools variation 962804 962804 . . . alleles " C T"; frequencies " 0.641176470588235 0.358823529411765"; depth 170 ; unknown ; N/A GL192509.1 samtools variation 962958 962958 . . . alleles " A T"; frequencies " 0.698795180722892 0.301204819277108"; depth 83 ; unknown ; N/A GL192509.1 samtools variation 963454 963454 . . . alleles " C A"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL192509.1 samtools variation 963616 963616 . . . alleles " C T"; frequencies " 0.532467532467532 0.467532467532468"; depth 77 ; unknown ; N/A GL192509.1 samtools variation 964017 964017 . . . alleles " G C"; frequencies " 0.73202614379085 0.26797385620915"; depth 153 ; unknown ; N/A GL192509.1 samtools variation 964620 964620 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL192509.1 samtools variation 965195 965195 . . . alleles " A G"; frequencies " 0.75968992248062 0.24031007751938"; depth 129 ; unknown ; N/A GL192509.1 samtools variation 965860 965860 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192509.1 samtools variation 966630 966630 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192509.1 samtools variation 966989 966989 . . . alleles " C A"; frequencies " 0.663551401869159 0.336448598130841"; depth 107 ; unknown ; N/A GL192509.1 samtools variation 967013 967013 . . . alleles " C T"; frequencies " 0.597826086956522 0.402173913043478"; depth 92 ; unknown ; N/A GL192509.1 samtools variation 967182 967182 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192509.1 samtools variation 967462 967462 . . . alleles " C T"; frequencies " 0.649122807017544 0.350877192982456"; depth 57 ; unknown ; N/A GL192509.1 samtools variation 967625 967625 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; unknown ; N/A GL192509.1 samtools variation 967835 967835 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192509.1 samtools variation 968441 968441 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 95 ; unknown ; N/A GL192509.1 samtools variation 968566 968566 . . . alleles " G A"; frequencies " 0.524590163934426 0.475409836065574"; depth 61 ; known ; N/A GL192509.1 samtools variation 968742 968742 . . . alleles " C T"; frequencies " 0.584434654919236 0.415565345080764"; depth 681 ; unknown ; synonymous GL192509.1 samtools variation 969552 969552 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL192509.1 samtools variation 973019 973019 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192509.1 samtools variation 980699 980699 . . . alleles " C T"; frequencies " 0.651851851851852 0.348148148148148"; depth 675 ; unknown ; synonymous GL192509.1 samtools variation 1120612 1120612 . . . alleles " A G"; frequencies " 0.614583333333333 0.385416666666667"; depth 96 ; known ; N/A GL192509.1 samtools variation 1126882 1126882 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192509.1 samtools variation 1288691 1288691 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 44 ; unknown ; synonymous GL192509.1 samtools variation 1290231 1290231 . . . alleles " C G"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; synonymous GL192509.1 samtools variation 1423042 1423042 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192509.1 samtools variation 1436498 1436498 . . . alleles " G A"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL192509.1 samtools variation 1485763 1485763 . . . alleles " G T"; frequencies " 0.547368421052632 0.452631578947368"; depth 95 ; unknown ; N/A GL192509.1 samtools variation 1600281 1600281 . . . alleles " G C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192509.1 samtools variation 1602958 1602958 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192509.1 samtools variation 1617897 1617897 . . . alleles " G C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192509.1 samtools variation 1626846 1626846 . . . alleles " T C"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192509.1 samtools variation 1628080 1628080 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192509.1 samtools variation 1633267 1633267 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192509.1 samtools variation 1636484 1636484 . . . alleles " T A"; frequencies " 0.230769230769231 0.769230769230769"; depth 117 ; unknown ; non-synonymous GL192509.1 samtools variation 1636773 1636773 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192509.1 samtools variation 1637969 1637969 . . . alleles " T C"; frequencies " 0.48 0.52"; depth 50 ; unknown ; N/A GL192509.1 samtools variation 1642336 1642336 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192509.1 samtools variation 1652198 1652198 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192509.1 samtools variation 1655836 1655836 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192509.1 samtools variation 1657252 1657252 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192509.1 samtools variation 1662210 1662210 . . . alleles " T G"; frequencies " 0.58 0.42"; depth 50 ; unknown ; N/A GL192509.1 samtools variation 1662730 1662730 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL192509.1 samtools variation 1663232 1663232 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL192509.1 samtools variation 1663272 1663272 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192509.1 samtools variation 1669108 1669108 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192509.1 samtools variation 1669893 1669893 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192509.1 samtools variation 1670949 1670949 . . . alleles " C G"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL192509.1 samtools variation 1673563 1673563 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192509.1 samtools variation 1677523 1677523 . . . alleles " C A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192509.1 samtools variation 1677538 1677538 . . . alleles " G T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192509.1 samtools variation 1677699 1677699 . . . alleles " T C"; frequencies " 0.662650602409639 0.337349397590361"; depth 83 ; unknown ; synonymous GL192509.1 samtools variation 1681014 1681014 . . . alleles " C T"; frequencies " 0.462962962962963 0.537037037037037"; depth 54 ; unknown ; synonymous GL192509.1 samtools variation 1681646 1681646 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192509.1 samtools variation 1682716 1682716 . . . alleles " T G"; frequencies " 0.297872340425532 0.702127659574468"; depth 47 ; unknown ; N/A GL192509.1 samtools variation 1683721 1683721 . . . alleles " T A"; frequencies " 0.433774834437086 0.566225165562914"; depth 302 ; unknown ; N/A GL192509.1 samtools variation 1683862 1683862 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 115 ; unknown ; N/A GL192509.1 samtools variation 1684275 1684275 . . . alleles " C T"; frequencies " 0.463768115942029 0.536231884057971"; depth 69 ; unknown ; N/A GL192509.1 samtools variation 1684711 1684711 . . . alleles " T C"; frequencies " 0.541284403669725 0.458715596330275"; depth 109 ; unknown ; N/A GL192509.1 samtools variation 1684827 1684827 . . . alleles " C T"; frequencies " 0.475903614457831 0.524096385542169"; depth 166 ; unknown ; N/A GL192509.1 samtools variation 1684924 1684924 . . . alleles " T C"; frequencies " 0.413461538461538 0.586538461538462"; depth 208 ; unknown ; N/A GL192509.1 samtools variation 1685918 1685918 . . . alleles " A C"; frequencies " 0.621468926553672 0.378531073446328"; depth 177 ; unknown ; N/A GL192509.1 samtools variation 1686348 1686348 . . . alleles " A C"; frequencies " 0.505263157894737 0.494736842105263"; depth 190 ; unknown ; N/A GL192509.1 samtools variation 1686519 1686519 . . . alleles " A T"; frequencies " 0.45778364116095 0.54221635883905"; depth 758 ; unknown ; N/A GL192509.1 samtools variation 1686946 1686946 . . . alleles " T C"; frequencies " 0.517857142857143 0.482142857142857"; depth 112 ; unknown ; N/A GL192509.1 samtools variation 1687768 1687768 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192509.1 samtools variation 1690902 1690902 . . . alleles " G T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192509.1 samtools variation 1692267 1692267 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192509.1 samtools variation 1726613 1726613 . . . alleles " C G"; frequencies " 0.720779220779221 0.279220779220779"; depth 154 ; unknown ; N/A GL192509.1 samtools variation 1726759 1726759 . . . alleles " T C"; frequencies " 0.462686567164179 0.537313432835821"; depth 67 ; unknown ; N/A GL192509.1 samtools variation 1734240 1734240 . . . alleles " T G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192509.1 samtools variation 1955703 1955703 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL192509.1 samtools variation 1961938 1961938 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192509.1 samtools variation 1966048 1966048 . . . alleles " G T"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; N/A GL192509.1 samtools variation 1966691 1966691 . . . alleles " T C"; frequencies " 0.507692307692308 0.492307692307692"; depth 65 ; unknown ; N/A GL192509.1 samtools variation 1967093 1967093 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192509.1 samtools variation 2129278 2129278 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192509.1 samtools variation 2130408 2130408 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL192509.1 samtools variation 2201604 2201604 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL192509.1 samtools variation 2236918 2236918 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; unknown ; N/A GL192509.1 samtools variation 2238567 2238567 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192509.1 samtools variation 2239318 2239318 . . . alleles " G T"; frequencies " 0.642276422764228 0.357723577235772"; depth 123 ; unknown ; N/A GL192509.1 samtools variation 2239444 2239444 . . . alleles " T C"; frequencies " 0.646153846153846 0.353846153846154"; depth 65 ; unknown ; N/A GL192509.1 samtools variation 2239590 2239590 . . . alleles " G C"; frequencies " 0.706896551724138 0.293103448275862"; depth 58 ; known ; N/A GL192509.1 samtools variation 2239931 2239931 . . . alleles " G A"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; known ; N/A GL192509.1 samtools variation 2240068 2240068 . . . alleles " G A"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; known ; N/A GL192509.1 samtools variation 2240406 2240406 . . . alleles " G A"; frequencies " 0.570175438596491 0.429824561403509"; depth 114 ; known ; N/A GL192509.1 samtools variation 2240821 2240821 . . . alleles " G A"; frequencies " 0.68141592920354 0.31858407079646"; depth 113 ; unknown ; N/A GL192509.1 samtools variation 2253313 2253313 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192511.1 samtools variation 825175 825175 . . . alleles " C T"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; unknown ; synonymous GL192513.1 samtools variation 73617 73617 . . . alleles " T A"; frequencies " 0.308823529411765 0.691176470588235"; depth 68 ; unknown ; N/A GL192513.1 samtools variation 80549 80549 . . . alleles " C T"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192513.1 samtools variation 80752 80752 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192513.1 samtools variation 83583 83583 . . . alleles " G C"; frequencies " 0.363636363636364 0.636363636363636"; depth 55 ; unknown ; N/A GL192513.1 samtools variation 86111 86111 . . . alleles " A G"; frequencies " 0.46551724137931 0.53448275862069"; depth 58 ; unknown ; N/A GL192513.1 samtools variation 110848 110848 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192513.1 samtools variation 115666 115666 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 52 ; unknown ; N/A GL192513.1 samtools variation 119909 119909 . . . alleles " G A"; frequencies " 0.54 0.46"; depth 50 ; unknown ; N/A GL192513.1 samtools variation 173729 173729 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 45 ; known ; N/A GL192514.1 samtools variation 94077 94077 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192514.1 samtools variation 95112 95112 . . . alleles " T C"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; known ; N/A GL192514.1 samtools variation 95371 95371 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; known ; N/A GL192514.1 samtools variation 280790 280790 . . . alleles " G C"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192514.1 samtools variation 351170 351170 . . . alleles " A C"; frequencies " 0.765432098765432 0.234567901234568"; depth 81 ; unknown ; N/A GL192514.1 samtools variation 352305 352305 . . . alleles " T A"; frequencies " 0.795918367346939 0.204081632653061"; depth 49 ; unknown ; N/A GL192514.1 samtools variation 354657 354657 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192514.1 samtools variation 355812 355812 . . . alleles " A G"; frequencies " 0.594594594594595 0.405405405405405"; depth 37 ; unknown ; N/A GL192514.1 samtools variation 356633 356633 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192514.1 samtools variation 399050 399050 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192514.1 samtools variation 399941 399941 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 72 ; known ; N/A GL192514.1 samtools variation 399985 399985 . . . alleles " T G"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; known ; N/A GL192514.1 samtools variation 400438 400438 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192514.1 samtools variation 425856 425856 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192514.1 samtools variation 428498 428498 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; known ; N/A GL192514.1 samtools variation 429200 429200 . . . alleles " T C"; frequencies " 0.765957446808511 0.234042553191489"; depth 47 ; unknown ; N/A GL192514.1 samtools variation 433095 433095 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192514.1 samtools variation 454953 454953 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192514.1 samtools variation 464779 464779 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192514.1 samtools variation 471770 471770 . . . alleles " G T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192514.1 samtools variation 478666 478666 . . . alleles " G T"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; known ; N/A GL192514.1 samtools variation 481672 481672 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL192514.1 samtools variation 482008 482008 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192514.1 samtools variation 487106 487106 . . . alleles " G A"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192514.1 samtools variation 489950 489950 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 25 ; unknown ; N/A GL192514.1 samtools variation 491945 491945 . . . alleles " A C"; frequencies " 0.24 0.76"; depth 25 ; unknown ; N/A GL192514.1 samtools variation 492329 492329 . . . alleles " C A"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL192514.1 samtools variation 493161 493161 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192514.1 samtools variation 493468 493468 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192514.1 samtools variation 500170 500170 . . . alleles " T C"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL192514.1 samtools variation 505648 505648 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192514.1 samtools variation 515805 515805 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192514.1 samtools variation 523464 523464 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192514.1 samtools variation 526789 526789 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192514.1 samtools variation 530174 530174 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192514.1 samtools variation 530937 530937 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192514.1 samtools variation 534118 534118 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192514.1 samtools variation 557895 557895 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192514.1 samtools variation 566359 566359 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192514.1 samtools variation 566415 566415 . . . alleles " G C"; frequencies " 0.4875 0.5125"; depth 80 ; known ; N/A GL192514.1 samtools variation 567384 567384 . . . alleles " A G"; frequencies " 0.77027027027027 0.22972972972973"; depth 74 ; unknown ; N/A GL192514.1 samtools variation 567388 567388 . . . alleles " T C"; frequencies " 0.771428571428571 0.228571428571429"; depth 70 ; unknown ; N/A GL192514.1 samtools variation 567472 567472 . . . alleles " A G"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL192514.1 samtools variation 568361 568361 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 40 ; unknown ; N/A GL192514.1 samtools variation 568613 568613 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; N/A GL192514.1 samtools variation 569313 569313 . . . alleles " T C"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192514.1 samtools variation 570335 570335 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192514.1 samtools variation 570765 570765 . . . alleles " T C"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL192514.1 samtools variation 574625 574625 . . . alleles " G T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192514.1 samtools variation 575353 575353 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192514.1 samtools variation 575821 575821 . . . alleles " T C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192514.1 samtools variation 579082 579082 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192514.1 samtools variation 580382 580382 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192514.1 samtools variation 585762 585762 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192514.1 samtools variation 587549 587549 . . . alleles " A C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192514.1 samtools variation 1469332 1469332 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192514.1 samtools variation 1474041 1474041 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 46 ; unknown ; synonymous GL192514.1 samtools variation 1626954 1626954 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; non-synonymous GL192514.1 samtools variation 1638381 1638381 . . . alleles " G C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; synonymous GL192514.1 samtools variation 1638382 1638382 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; synonymous GL192514.1 samtools variation 1644205 1644205 . . . alleles " C T"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; synonymous GL192514.1 samtools variation 1646769 1646769 . . . alleles " G C"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; synonymous GL192514.1 samtools variation 1654628 1654628 . . . alleles " C T"; frequencies " 0.558139534883721 0.441860465116279"; depth 43 ; unknown ; synonymous GL192514.1 samtools variation 1656229 1656229 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 32 ; known ; synonymous GL192514.1 samtools variation 1659742 1659742 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; synonymous GL192514.1 samtools variation 1660273 1660273 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; synonymous GL192514.1 samtools variation 1660557 1660557 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; non-synonymous GL192514.1 samtools variation 1676809 1676809 . . . alleles " C A"; frequencies " 0.38 0.62"; depth 50 ; unknown ; synonymous GL192514.1 samtools variation 1677120 1677120 . . . alleles " C T"; frequencies " 0.679012345679012 0.320987654320988"; depth 81 ; known ; synonymous GL192514.1 samtools variation 1677375 1677375 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; known ; synonymous GL192514.1 samtools variation 1715821 1715821 . . . alleles " G A"; frequencies " 0.541176470588235 0.458823529411765"; depth 85 ; unknown ; synonymous GL192514.1 samtools variation 1716885 1716885 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192514.1 samtools variation 1736764 1736764 . . . alleles " T A"; frequencies " 0.707692307692308 0.292307692307692"; depth 65 ; unknown ; non-synonymous GL192514.1 samtools variation 1740868 1740868 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192514.1 samtools variation 1744062 1744062 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192514.1 samtools variation 1765223 1765223 . . . alleles " G T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192514.1 samtools variation 1767497 1767497 . . . alleles " T C"; frequencies " 0.661538461538462 0.338461538461538"; depth 65 ; unknown ; synonymous GL192514.1 samtools variation 1768501 1768501 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; synonymous GL192514.1 samtools variation 1769391 1769391 . . . alleles " T G"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192514.1 samtools variation 2086032 2086032 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; known ; N/A GL192514.1 samtools variation 2087707 2087707 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 52 ; unknown ; N/A GL192514.1 samtools variation 2088008 2088008 . . . alleles " C G"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL192514.1 samtools variation 2088238 2088238 . . . alleles " A G"; frequencies " 0.604651162790698 0.395348837209302"; depth 43 ; known ; N/A GL192514.1 samtools variation 2088394 2088394 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192514.1 samtools variation 2088451 2088451 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192514.1 samtools variation 2088458 2088458 . . . alleles " T G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192514.1 samtools variation 2088864 2088864 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL192514.1 samtools variation 2243462 2243462 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192515.1 samtools variation 129072 129072 . . . alleles " T A"; frequencies " 0.269230769230769 0.730769230769231"; depth 52 ; known ; N/A GL192515.1 samtools variation 134344 134344 . . . alleles " G A"; frequencies " 0.34375 0.65625"; depth 32 ; unknown ; N/A GL192515.1 samtools variation 134474 134474 . . . alleles " C T"; frequencies " 0.342857142857143 0.657142857142857"; depth 35 ; unknown ; N/A GL192515.1 samtools variation 135545 135545 . . . alleles " A G"; frequencies " 0.35031847133758 0.64968152866242"; depth 314 ; unknown ; synonymous GL192515.1 samtools variation 135800 135800 . . . alleles " G C"; frequencies " 0.304075235109718 0.695924764890282"; depth 319 ; unknown ; non-synonymous GL192515.1 samtools variation 136978 136978 . . . alleles " T G"; frequencies " 0.232758620689655 0.767241379310345"; depth 116 ; unknown ; synonymous GL192515.1 samtools variation 137219 137219 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192515.1 samtools variation 137672 137672 . . . alleles " G T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192515.1 samtools variation 164109 164109 . . . alleles " G T"; frequencies " 0.577557755775578 0.422442244224422"; depth 303 ; unknown ; N/A GL192515.1 samtools variation 183610 183610 . . . alleles " A G"; frequencies " 0.65625 0.34375"; depth 32 ; known ; N/A GL192515.1 samtools variation 186596 186596 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192515.1 samtools variation 191393 191393 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192515.1 samtools variation 276445 276445 . . . alleles " C T"; frequencies " 0.216216216216216 0.783783783783784"; depth 37 ; known ; non-synonymous GL192515.1 samtools variation 284950 284950 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192515.1 samtools variation 285657 285657 . . . alleles " T G"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL192515.1 samtools variation 285772 285772 . . . alleles " C T"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL192515.1 samtools variation 300478 300478 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192515.1 samtools variation 338164 338164 . . . alleles " C T"; frequencies " 0.688888888888889 0.311111111111111"; depth 45 ; known ; non-synonymous GL192515.1 samtools variation 490061 490061 . . . alleles " T C"; frequencies " 0.310344827586207 0.689655172413793"; depth 58 ; known ; N/A GL192515.1 samtools variation 564769 564769 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192515.1 samtools variation 565569 565569 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192515.1 samtools variation 1029858 1029858 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192515.1 samtools variation 1325866 1325866 . . . alleles " G T"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; N/A GL192515.1 samtools variation 1373466 1373466 . . . alleles " T G"; frequencies " 0.71978021978022 0.28021978021978"; depth 182 ; unknown ; N/A GL192515.1 samtools variation 1373750 1373750 . . . alleles " T C"; frequencies " 0.489795918367347 0.510204081632653"; depth 98 ; unknown ; N/A GL192515.1 samtools variation 1390252 1390252 . . . alleles " G C"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192515.1 samtools variation 1391052 1391052 . . . alleles " T C"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; unknown ; N/A GL192515.1 samtools variation 1392102 1392102 . . . alleles " C A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192515.1 samtools variation 1415172 1415172 . . . alleles " C A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192515.1 samtools variation 1415739 1415739 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192516.1 samtools variation 85099 85099 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192516.1 samtools variation 91697 91697 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192516.1 samtools variation 113078 113078 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192516.1 samtools variation 154638 154638 . . . alleles " T G"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; known ; non-synonymous GL192516.1 samtools variation 166329 166329 . . . alleles " G A"; frequencies " 0.693877551020408 0.306122448979592"; depth 49 ; unknown ; non-synonymous GL192516.1 samtools variation 169131 169131 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192516.1 samtools variation 169785 169785 . . . alleles " T C"; frequencies " 0.474576271186441 0.525423728813559"; depth 59 ; unknown ; N/A GL192516.1 samtools variation 395847 395847 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192516.1 samtools variation 418066 418066 . . . alleles " T A"; frequencies " 0.679245283018868 0.320754716981132"; depth 53 ; unknown ; N/A GL192516.1 samtools variation 418149 418149 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 45 ; known ; N/A GL192516.1 samtools variation 419550 419550 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; synonymous GL192516.1 samtools variation 443585 443585 . . . alleles " A G"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL192516.1 samtools variation 662579 662579 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192516.1 samtools variation 741573 741573 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192516.1 samtools variation 815645 815645 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; non-synonymous GL192516.1 samtools variation 856918 856918 . . . alleles " G C"; frequencies " 0.227272727272727 0.772727272727273"; depth 44 ; unknown ; N/A GL192516.1 samtools variation 1042794 1042794 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192516.1 samtools variation 1684938 1684938 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; synonymous GL192516.1 samtools variation 1844133 1844133 . . . alleles " G A"; frequencies " 0.767605633802817 0.232394366197183"; depth 142 ; unknown ; non-synonymous GL192516.1 samtools variation 1844182 1844182 . . . alleles " C T"; frequencies " 0.720930232558139 0.27906976744186"; depth 129 ; unknown ; non-synonymous GL192516.1 samtools variation 1852127 1852127 . . . alleles " A G"; frequencies " 0.736363636363636 0.263636363636364"; depth 110 ; known ; N/A GL192516.1 samtools variation 1852257 1852257 . . . alleles " T C"; frequencies " 0.274853801169591 0.725146198830409"; depth 171 ; known ; N/A GL192516.1 samtools variation 1852308 1852308 . . . alleles " A T"; frequencies " 0.715736040609137 0.284263959390863"; depth 197 ; known ; N/A GL192516.1 samtools variation 1852483 1852483 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192516.1 samtools variation 1853040 1853040 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192516.1 samtools variation 1854676 1854676 . . . alleles " G A"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL192516.1 samtools variation 1854737 1854737 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192518.1 samtools variation 549790 549790 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; synonymous GL192518.1 samtools variation 1020378 1020378 . . . alleles " G A"; frequencies " 0.511111111111111 0.488888888888889"; depth 45 ; known ; N/A GL192518.1 samtools variation 1020786 1020786 . . . alleles " G T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192518.1 samtools variation 1021228 1021228 . . . alleles " T A"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192518.1 samtools variation 1022121 1022121 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192518.1 samtools variation 1022300 1022300 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192518.1 samtools variation 1022521 1022521 . . . alleles " T A"; frequencies " 0.532110091743119 0.467889908256881"; depth 109 ; known ; N/A GL192518.1 samtools variation 1087314 1087314 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192518.1 samtools variation 1096521 1096521 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192518.1 samtools variation 1218215 1218215 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192518.1 samtools variation 1220806 1220806 . . . alleles " A T"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; unknown ; N/A GL192518.1 samtools variation 1220839 1220839 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192518.1 samtools variation 1221672 1221672 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; N/A GL192518.1 samtools variation 1259675 1259675 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192518.1 samtools variation 1260260 1260260 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192518.1 samtools variation 1260452 1260452 . . . alleles " G T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192518.1 samtools variation 1260466 1260466 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192518.1 samtools variation 1260485 1260485 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192518.1 samtools variation 1265003 1265003 . . . alleles " G C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; non-synonymous GL192518.1 samtools variation 1278464 1278464 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 117 ; unknown ; N/A GL192518.1 samtools variation 1279775 1279775 . . . alleles " T A"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; unknown ; N/A GL192518.1 samtools variation 1279982 1279982 . . . alleles " A G"; frequencies " 0.776119402985075 0.223880597014925"; depth 67 ; unknown ; N/A GL192518.1 samtools variation 1282346 1282346 . . . alleles " A C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192518.1 samtools variation 1340780 1340780 . . . alleles " A T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192518.1 samtools variation 1459464 1459464 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192518.1 samtools variation 1559577 1559577 . . . alleles " A G"; frequencies " 0.621848739495798 0.378151260504202"; depth 119 ; known ; synonymous GL192518.1 samtools variation 1559652 1559652 . . . alleles " G A"; frequencies " 0.409090909090909 0.590909090909091"; depth 132 ; known ; synonymous GL192518.1 samtools variation 1561217 1561217 . . . alleles " G A"; frequencies " 0.632352941176471 0.367647058823529"; depth 68 ; unknown ; synonymous GL192518.1 samtools variation 1561247 1561247 . . . alleles " A G"; frequencies " 0.65625 0.34375"; depth 32 ; known ; synonymous GL192518.1 samtools variation 1592198 1592198 . . . alleles " A C"; frequencies " 0.682539682539683 0.317460317460317"; depth 63 ; unknown ; synonymous GL192518.1 samtools variation 1617241 1617241 . . . alleles " T A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192518.1 samtools variation 1617598 1617598 . . . alleles " C G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192518.1 samtools variation 1617657 1617657 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192518.1 samtools variation 1618987 1618987 . . . alleles " T C"; frequencies " 0.370689655172414 0.629310344827586"; depth 116 ; unknown ; synonymous GL192518.1 samtools variation 1622199 1622199 . . . alleles " C T"; frequencies " 0.447368421052632 0.552631578947368"; depth 38 ; unknown ; N/A GL192518.1 samtools variation 1624051 1624051 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192518.1 samtools variation 1640588 1640588 . . . alleles " G T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192518.1 samtools variation 1658165 1658165 . . . alleles " T C"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; known ; synonymous GL192518.1 samtools variation 1807294 1807294 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192518.1 samtools variation 1875427 1875427 . . . alleles " A G"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL192518.1 samtools variation 1877756 1877756 . . . alleles " A T"; frequencies " 0.27027027027027 0.72972972972973"; depth 37 ; known ; N/A GL192519.1 samtools variation 87261 87261 . . . alleles " T C"; frequencies " 0.706349206349206 0.293650793650794"; depth 126 ; unknown ; N/A GL192519.1 samtools variation 90151 90151 . . . alleles " C G"; frequencies " 0.277620396600567 0.722379603399433"; depth 353 ; unknown ; non-synonymous GL192519.1 samtools variation 90179 90179 . . . alleles " C T"; frequencies " 0.365155131264916 0.634844868735084"; depth 419 ; unknown ; synonymous GL192519.1 samtools variation 96134 96134 . . . alleles " C T"; frequencies " 0.334459459459459 0.665540540540541"; depth 296 ; unknown ; non-synonymous GL192519.1 samtools variation 123175 123175 . . . alleles " T C"; frequencies " 0.788990825688073 0.211009174311927"; depth 109 ; unknown ; N/A GL192519.1 samtools variation 154357 154357 . . . alleles " G T"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL192519.1 samtools variation 155544 155544 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192519.1 samtools variation 176044 176044 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192519.1 samtools variation 176876 176876 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192519.1 samtools variation 179833 179833 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192519.1 samtools variation 181165 181165 . . . alleles " A C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192519.1 samtools variation 181925 181925 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192519.1 samtools variation 188038 188038 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 54 ; unknown ; N/A GL192519.1 samtools variation 308530 308530 . . . alleles " A G"; frequencies " 0.205882352941176 0.794117647058823"; depth 34 ; unknown ; N/A GL192519.1 samtools variation 361130 361130 . . . alleles " G A"; frequencies " 0.243243243243243 0.756756756756757"; depth 74 ; unknown ; N/A GL192519.1 samtools variation 367268 367268 . . . alleles " A G"; frequencies " 0.251396648044693 0.748603351955307"; depth 179 ; known ; N/A GL192519.1 samtools variation 370193 370193 . . . alleles " G A"; frequencies " 0.237995824634656 0.762004175365344"; depth 479 ; known ; N/A GL192519.1 samtools variation 383746 383746 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192519.1 samtools variation 389615 389615 . . . alleles " T C"; frequencies " 0.798634812286689 0.201365187713311"; depth 293 ; unknown ; non-synonymous GL192519.1 samtools variation 579235 579235 . . . alleles " G C"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; known ; N/A GL192519.1 samtools variation 579603 579603 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192519.1 samtools variation 614794 614794 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; synonymous GL192519.1 samtools variation 681445 681445 . . . alleles " A C"; frequencies " 0.478260869565217 0.521739130434783"; depth 115 ; known ; synonymous GL192519.1 samtools variation 683458 683458 . . . alleles " T C"; frequencies " 0.677966101694915 0.305084745762712"; depth 59 ; known ; N/A GL192519.1 samtools variation 694880 694880 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192519.1 samtools variation 696315 696315 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL192519.1 samtools variation 706124 706124 . . . alleles " C T"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL192519.1 samtools variation 706672 706672 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192519.1 samtools variation 707476 707476 . . . alleles " G A"; frequencies " 0.745098039215686 0.254901960784314"; depth 204 ; unknown ; non-synonymous GL192519.1 samtools variation 708393 708393 . . . alleles " A G"; frequencies " 0.727011494252874 0.272988505747126"; depth 348 ; unknown ; N/A GL192519.1 samtools variation 708413 708413 . . . alleles " C T"; frequencies " 0.463917525773196 0.536082474226804"; depth 291 ; unknown ; N/A GL192519.1 samtools variation 759292 759292 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; unknown ; synonymous GL192519.1 samtools variation 917175 917175 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192519.1 samtools variation 920336 920336 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 51 ; unknown ; N/A GL192519.1 samtools variation 920536 920536 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 84 ; unknown ; N/A GL192519.1 samtools variation 922317 922317 . . . alleles " A C"; frequencies " 0.698630136986301 0.301369863013699"; depth 73 ; unknown ; N/A GL192519.1 samtools variation 922636 922636 . . . alleles " C T"; frequencies " 0.417721518987342 0.582278481012658"; depth 79 ; unknown ; N/A GL192519.1 samtools variation 923188 923188 . . . alleles " G A"; frequencies " 0.269230769230769 0.730769230769231"; depth 52 ; known ; N/A GL192519.1 samtools variation 923859 923859 . . . alleles " T C"; frequencies " 0.371428571428571 0.628571428571429"; depth 35 ; known ; N/A GL192519.1 samtools variation 924891 924891 . . . alleles " T G"; frequencies " 0.659420289855073 0.340579710144928"; depth 138 ; unknown ; N/A GL192519.1 samtools variation 925137 925137 . . . alleles " C T"; frequencies " 0.394736842105263 0.605263157894737"; depth 76 ; unknown ; N/A GL192519.1 samtools variation 926030 926030 . . . alleles " T A"; frequencies " 0.784 0.216"; depth 125 ; unknown ; N/A GL192519.1 samtools variation 928623 928623 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL192519.1 samtools variation 929513 929513 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192519.1 samtools variation 1041195 1041195 . . . alleles " T C"; frequencies " 0.32 0.68"; depth 25 ; known ; non-synonymous GL192519.1 samtools variation 1225804 1225804 . . . alleles " C G"; frequencies " 0.64 0.36"; depth 25 ; unknown ; non-synonymous GL192519.1 samtools variation 1226561 1226561 . . . alleles " A G"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; synonymous GL192520.1 samtools variation 1522242 1522242 . . . alleles " C A"; frequencies " 0.796296296296296 0.203703703703704"; depth 54 ; unknown ; N/A GL192520.1 samtools variation 1828910 1828910 . . . alleles " G A"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL192520.1 samtools variation 1828987 1828987 . . . alleles " T G"; frequencies " 0.27027027027027 0.72972972972973"; depth 37 ; known ; N/A GL192520.1 samtools variation 1829078 1829078 . . . alleles " C T"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; known ; N/A GL192520.1 samtools variation 1829138 1829138 . . . alleles " G C"; frequencies " 0.302325581395349 0.697674418604651"; depth 43 ; known ; N/A GL192520.1 samtools variation 1831582 1831582 . . . alleles " C T"; frequencies " 0.67870036101083 0.32129963898917"; depth 277 ; unknown ; N/A GL192520.1 samtools variation 1832352 1832352 . . . alleles " A G"; frequencies " 0.64 0.36"; depth 75 ; unknown ; N/A GL192520.1 samtools variation 1836051 1836051 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; known ; N/A GL192520.1 samtools variation 1836991 1836991 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192520.1 samtools variation 1837375 1837375 . . . alleles " T C"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL192520.1 samtools variation 1840036 1840036 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; known ; N/A GL192520.1 samtools variation 1840041 1840041 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; known ; N/A GL192520.1 samtools variation 1841951 1841951 . . . alleles " T A"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL192520.1 samtools variation 1844615 1844615 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192520.1 samtools variation 1847699 1847699 . . . alleles " T G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192520.1 samtools variation 1888556 1888556 . . . alleles " G C"; frequencies " 0.548387096774194 0.451612903225806"; depth 62 ; known ; N/A GL192521.1 samtools variation 605375 605375 . . . alleles " C T"; frequencies " 0.346938775510204 0.653061224489796"; depth 49 ; unknown ; synonymous GL192521.1 samtools variation 665060 665060 . . . alleles " A T"; frequencies " 0.655555555555556 0.344444444444444"; depth 180 ; unknown ; N/A GL192521.1 samtools variation 665265 665265 . . . alleles " C T"; frequencies " 0.469135802469136 0.530864197530864"; depth 162 ; unknown ; N/A GL192521.1 samtools variation 906193 906193 . . . alleles " A G"; frequencies " 0.523255813953488 0.476744186046512"; depth 86 ; known ; N/A GL192521.1 samtools variation 906303 906303 . . . alleles " T C"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; known ; N/A GL192521.1 samtools variation 906403 906403 . . . alleles " T C"; frequencies " 0.338983050847458 0.661016949152542"; depth 59 ; known ; N/A GL192521.1 samtools variation 906652 906652 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 48 ; known ; N/A GL192521.1 samtools variation 906803 906803 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 84 ; known ; N/A GL192521.1 samtools variation 907510 907510 . . . alleles " A G"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; known ; N/A GL192521.1 samtools variation 907640 907640 . . . alleles " A C"; frequencies " 0.406593406593407 0.593406593406593"; depth 91 ; known ; N/A GL192521.1 samtools variation 908070 908070 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 52 ; known ; N/A GL192521.1 samtools variation 909032 909032 . . . alleles " A T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL192521.1 samtools variation 909404 909404 . . . alleles " G T"; frequencies " 0.6875 0.3125"; depth 32 ; known ; N/A GL192521.1 samtools variation 909826 909826 . . . alleles " G A"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; known ; N/A GL192521.1 samtools variation 910018 910018 . . . alleles " A G"; frequencies " 0.370967741935484 0.629032258064516"; depth 62 ; known ; N/A GL192521.1 samtools variation 910095 910095 . . . alleles " T C"; frequencies " 0.465116279069767 0.534883720930233"; depth 43 ; known ; N/A GL192521.1 samtools variation 910244 910244 . . . alleles " A G"; frequencies " 0.404761904761905 0.595238095238095"; depth 42 ; known ; N/A GL192521.1 samtools variation 910458 910458 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192521.1 samtools variation 910537 910537 . . . alleles " G A"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192521.1 samtools variation 910580 910580 . . . alleles " G A"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; known ; N/A GL192521.1 samtools variation 910703 910703 . . . alleles " C T"; frequencies " 0.470046082949309 0.529953917050691"; depth 217 ; known ; N/A GL192521.1 samtools variation 910726 910726 . . . alleles " C T"; frequencies " 0.493827160493827 0.506172839506173"; depth 243 ; unknown ; N/A GL192521.1 samtools variation 912953 912953 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; known ; N/A GL192521.1 samtools variation 913950 913950 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192521.1 samtools variation 931906 931906 . . . alleles " T A"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL192521.1 samtools variation 934235 934235 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; known ; N/A GL192521.1 samtools variation 1273087 1273087 . . . alleles " C T"; frequencies " 0.252873563218391 0.747126436781609"; depth 87 ; unknown ; N/A GL192521.1 samtools variation 1273118 1273118 . . . alleles " G A"; frequencies " 0.305555555555556 0.694444444444444"; depth 108 ; unknown ; N/A GL192521.1 samtools variation 1273473 1273473 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 30 ; known ; N/A GL192521.1 samtools variation 1273672 1273672 . . . alleles " A T"; frequencies " 0.265625 0.734375"; depth 64 ; known ; N/A GL192521.1 samtools variation 1274284 1274284 . . . alleles " C T"; frequencies " 0.24390243902439 0.75609756097561"; depth 41 ; unknown ; N/A GL192521.1 samtools variation 1274431 1274431 . . . alleles " G A"; frequencies " 0.317460317460317 0.682539682539683"; depth 63 ; unknown ; N/A GL192521.1 samtools variation 1274757 1274757 . . . alleles " T C"; frequencies " 0.305555555555556 0.694444444444444"; depth 36 ; unknown ; N/A GL192521.1 samtools variation 1347487 1347487 . . . alleles " C T"; frequencies " 0.773809523809524 0.226190476190476"; depth 504 ; unknown ; N/A GL192521.1 samtools variation 1352584 1352584 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192521.1 samtools variation 1354001 1354001 . . . alleles " T G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192521.1 samtools variation 1369969 1369969 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192521.1 samtools variation 1375752 1375752 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192521.1 samtools variation 1509254 1509254 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192521.1 samtools variation 1523536 1523536 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192521.1 samtools variation 1727680 1727680 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; non-synonymous GL192522.1 samtools variation 800578 800578 . . . alleles " T A"; frequencies " 0.55 0.45"; depth 40 ; unknown ; N/A GL192522.1 samtools variation 801129 801129 . . . alleles " A C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192522.1 samtools variation 801131 801131 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192522.1 samtools variation 801845 801845 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192522.1 samtools variation 818505 818505 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192522.1 samtools variation 826506 826506 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192522.1 samtools variation 838704 838704 . . . alleles " C T"; frequencies " 0.765957446808511 0.234042553191489"; depth 47 ; unknown ; synonymous GL192522.1 samtools variation 844555 844555 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192522.1 samtools variation 844698 844698 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192522.1 samtools variation 850130 850130 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 48 ; unknown ; N/A GL192522.1 samtools variation 970749 970749 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192522.1 samtools variation 973203 973203 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192522.1 samtools variation 1063577 1063577 . . . alleles " T C"; frequencies " 0.453333333333333 0.546666666666667"; depth 75 ; unknown ; non-synonymous GL192522.1 samtools variation 1111171 1111171 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192522.1 samtools variation 1146736 1146736 . . . alleles " C T"; frequencies " 0.781350482315113 0.218649517684887"; depth 311 ; unknown ; synonymous GL192522.1 samtools variation 1162849 1162849 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192522.1 samtools variation 1166269 1166269 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192522.1 samtools variation 1257357 1257357 . . . alleles " C A"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; unknown ; N/A GL192522.1 samtools variation 1327406 1327406 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192522.1 samtools variation 1570892 1570892 . . . alleles " T G"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL192522.1 samtools variation 1593936 1593936 . . . alleles " T C"; frequencies " 0.790575916230366 0.209424083769634"; depth 191 ; unknown ; N/A GL192522.1 samtools variation 1595890 1595890 . . . alleles " T A"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL192522.1 samtools variation 1596024 1596024 . . . alleles " G A"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192522.1 samtools variation 1645258 1645258 . . . alleles " T A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192522.1 samtools variation 1756187 1756187 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192522.1 samtools variation 1808413 1808413 . . . alleles " T A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192522.1 samtools variation 1856222 1856222 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192522.1 samtools variation 1932217 1932217 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 24 ; unknown ; synonymous GL192522.1 samtools variation 1939959 1939959 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192522.1 samtools variation 1944054 1944054 . . . alleles " G A"; frequencies " 0.610169491525424 0.389830508474576"; depth 59 ; unknown ; non-synonymous GL192522.1 samtools variation 1948438 1948438 . . . alleles " C A"; frequencies " 0.581081081081081 0.418918918918919"; depth 74 ; unknown ; synonymous GL192522.1 samtools variation 1952199 1952199 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 80 ; unknown ; N/A GL192522.1 samtools variation 1952847 1952847 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 46 ; unknown ; N/A GL192522.1 samtools variation 1952899 1952899 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192522.1 samtools variation 2008050 2008050 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; synonymous GL192522.1 samtools variation 2021366 2021366 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192522.1 samtools variation 2021509 2021509 . . . alleles " A C"; frequencies " 0.779411764705882 0.220588235294118"; depth 68 ; unknown ; N/A GL192522.1 samtools variation 2022176 2022176 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 48 ; unknown ; N/A GL192522.1 samtools variation 2022513 2022513 . . . alleles " G C"; frequencies " 0.684210526315789 0.315789473684211"; depth 76 ; unknown ; N/A GL192522.1 samtools variation 2022658 2022658 . . . alleles " G C"; frequencies " 0.710526315789474 0.289473684210526"; depth 76 ; unknown ; N/A GL192522.1 samtools variation 2027574 2027574 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192522.1 samtools variation 2088448 2088448 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; N/A GL192522.1 samtools variation 2100360 2100360 . . . alleles " A T"; frequencies " 0.719101123595506 0.280898876404494"; depth 89 ; unknown ; synonymous GL192522.1 samtools variation 2213583 2213583 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192522.1 samtools variation 2213591 2213591 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192523.1 samtools variation 364785 364785 . . . alleles " A G"; frequencies " 0.741379310344828 0.258620689655172"; depth 58 ; unknown ; synonymous GL192523.1 samtools variation 375046 375046 . . . alleles " A T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192523.1 samtools variation 510927 510927 . . . alleles " A C"; frequencies " 0.431372549019608 0.568627450980392"; depth 51 ; known ; N/A GL192523.1 samtools variation 510968 510968 . . . alleles " C T"; frequencies " 0.618181818181818 0.381818181818182"; depth 55 ; known ; N/A GL192523.1 samtools variation 511380 511380 . . . alleles " G T"; frequencies " 0.532544378698225 0.467455621301775"; depth 169 ; known ; N/A GL192523.1 samtools variation 512246 512246 . . . alleles " A G"; frequencies " 0.459459459459459 0.540540540540541"; depth 37 ; known ; N/A GL192523.1 samtools variation 512439 512439 . . . alleles " A G"; frequencies " 0.789915966386555 0.210084033613445"; depth 119 ; known ; N/A GL192523.1 samtools variation 512476 512476 . . . alleles " T C"; frequencies " 0.226190476190476 0.773809523809524"; depth 84 ; known ; N/A GL192523.1 samtools variation 513103 513103 . . . alleles " C T"; frequencies " 0.464285714285714 0.535714285714286"; depth 112 ; known ; N/A GL192523.1 samtools variation 513246 513246 . . . alleles " C A"; frequencies " 0.725 0.275"; depth 40 ; known ; N/A GL192523.1 samtools variation 513408 513408 . . . alleles " C T"; frequencies " 0.27027027027027 0.72972972972973"; depth 37 ; known ; N/A GL192523.1 samtools variation 514711 514711 . . . alleles " C T"; frequencies " 0.307017543859649 0.692982456140351"; depth 114 ; known ; N/A GL192523.1 samtools variation 522705 522705 . . . alleles " C T"; frequencies " 0.754098360655738 0.245901639344262"; depth 61 ; known ; non-synonymous GL192523.1 samtools variation 532315 532315 . . . alleles " A T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192523.1 samtools variation 532323 532323 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192523.1 samtools variation 618398 618398 . . . alleles " G T"; frequencies " 0.773480662983425 0.226519337016575"; depth 181 ; unknown ; N/A GL192523.1 samtools variation 1054989 1054989 . . . alleles " G C"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; N/A GL192523.1 samtools variation 1076578 1076578 . . . alleles " G C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; non-synonymous GL192523.1 samtools variation 1279994 1279994 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; synonymous GL192523.1 samtools variation 1415492 1415492 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192523.1 samtools variation 1432500 1432500 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192523.1 samtools variation 1560009 1560009 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192524.1 samtools variation 800167 800167 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; N/A GL192524.1 samtools variation 800181 800181 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL192524.1 samtools variation 800312 800312 . . . alleles " A G"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; known ; N/A GL192524.1 samtools variation 853796 853796 . . . alleles " A G"; frequencies " 0.552380952380952 0.447619047619048"; depth 105 ; unknown ; non-synonymous GL192524.1 samtools variation 858654 858654 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL192524.1 samtools variation 874614 874614 . . . alleles " A G"; frequencies " 0.779527559055118 0.220472440944882"; depth 127 ; unknown ; N/A GL192524.1 samtools variation 875864 875864 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192524.1 samtools variation 878639 878639 . . . alleles " G A"; frequencies " 0.709677419354839 0.290322580645161"; depth 62 ; unknown ; N/A GL192524.1 samtools variation 1145876 1145876 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192524.1 samtools variation 1411440 1411440 . . . alleles " C A"; frequencies " 0.472222222222222 0.527777777777778"; depth 36 ; unknown ; N/A GL192524.1 samtools variation 1411591 1411591 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192524.1 samtools variation 1412815 1412815 . . . alleles " T C"; frequencies " 0.415384615384615 0.584615384615385"; depth 65 ; unknown ; N/A GL192524.1 samtools variation 1412917 1412917 . . . alleles " T C"; frequencies " 0.342105263157895 0.657894736842105"; depth 38 ; unknown ; N/A GL192524.1 samtools variation 1413450 1413450 . . . alleles " G A"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; unknown ; N/A GL192524.1 samtools variation 1413986 1413986 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192524.1 samtools variation 1415305 1415305 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192524.1 samtools variation 1419609 1419609 . . . alleles " T C"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192524.1 samtools variation 1458537 1458537 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192524.1 samtools variation 1590014 1590014 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; synonymous GL192524.1 samtools variation 1650208 1650208 . . . alleles " C G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192525.1 samtools variation 1789697 1789697 . . . alleles " G A"; frequencies " 0.673913043478261 0.326086956521739"; depth 46 ; unknown ; synonymous GL192525.1 samtools variation 1791209 1791209 . . . alleles " T C"; frequencies " 0.35 0.633333333333333"; depth 60 ; unknown ; synonymous GL192525.1 samtools variation 1794090 1794090 . . . alleles " G A"; frequencies " 0.558139534883721 0.441860465116279"; depth 43 ; unknown ; N/A GL192525.1 samtools variation 1794240 1794240 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 34 ; unknown ; N/A GL192525.1 samtools variation 1794307 1794307 . . . alleles " G A"; frequencies " 0.292682926829268 0.707317073170732"; depth 41 ; unknown ; N/A GL192525.1 samtools variation 1795286 1795286 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 56 ; unknown ; N/A GL192525.1 samtools variation 1796754 1796754 . . . alleles " G T"; frequencies " 0.275 0.725"; depth 40 ; unknown ; N/A GL192525.1 samtools variation 1805464 1805464 . . . alleles " C T"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; unknown ; synonymous GL192525.1 samtools variation 1817705 1817705 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192525.1 samtools variation 1869650 1869650 . . . alleles " C A"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; N/A GL192525.1 samtools variation 1870192 1870192 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192525.1 samtools variation 1870193 1870193 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192525.1 samtools variation 1880994 1880994 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; known ; N/A GL192525.1 samtools variation 1881248 1881248 . . . alleles " C T"; frequencies " 0.319148936170213 0.680851063829787"; depth 94 ; unknown ; N/A GL192525.1 samtools variation 1881563 1881563 . . . alleles " T C"; frequencies " 0.354838709677419 0.645161290322581"; depth 62 ; unknown ; N/A GL192525.1 samtools variation 1881668 1881668 . . . alleles " A G"; frequencies " 0.291457286432161 0.708542713567839"; depth 199 ; unknown ; N/A GL192525.1 samtools variation 1881792 1881792 . . . alleles " G T"; frequencies " 0.504807692307692 0.495192307692308"; depth 208 ; unknown ; N/A GL192525.1 samtools variation 1882155 1882155 . . . alleles " T C"; frequencies " 0.397959183673469 0.602040816326531"; depth 98 ; unknown ; N/A GL192525.1 samtools variation 1882264 1882264 . . . alleles " G A"; frequencies " 0.345454545454545 0.654545454545455"; depth 165 ; unknown ; N/A GL192525.1 samtools variation 1882349 1882349 . . . alleles " T G"; frequencies " 0.312796208530806 0.687203791469194"; depth 211 ; unknown ; N/A GL192525.1 samtools variation 1882383 1882383 . . . alleles " C T"; frequencies " 0.434262948207171 0.565737051792829"; depth 251 ; unknown ; N/A GL192525.1 samtools variation 1882469 1882469 . . . alleles " A G"; frequencies " 0.300699300699301 0.699300699300699"; depth 143 ; unknown ; N/A GL192525.1 samtools variation 1882901 1882901 . . . alleles " A C"; frequencies " 0.576271186440678 0.423728813559322"; depth 354 ; unknown ; N/A GL192525.1 samtools variation 1883027 1883027 . . . alleles " G A"; frequencies " 0.590163934426229 0.409836065573771"; depth 244 ; unknown ; N/A GL192525.1 samtools variation 1883079 1883079 . . . alleles " A C"; frequencies " 0.671875 0.328125"; depth 192 ; unknown ; N/A GL192525.1 samtools variation 1883178 1883178 . . . alleles " C G"; frequencies " 0.683673469387755 0.316326530612245"; depth 98 ; unknown ; N/A GL192525.1 samtools variation 1883284 1883284 . . . alleles " G A"; frequencies " 0.574850299401198 0.425149700598802"; depth 167 ; unknown ; N/A GL192525.1 samtools variation 1883478 1883478 . . . alleles " G A"; frequencies " 0.48 0.52"; depth 150 ; unknown ; N/A GL192525.1 samtools variation 1888209 1888209 . . . alleles " C A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192525.1 samtools variation 1893012 1893012 . . . alleles " T C"; frequencies " 0.39 0.61"; depth 100 ; unknown ; non-synonymous GL192525.1 samtools variation 1900464 1900464 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192525.1 samtools variation 2001532 2001532 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192525.1 samtools variation 2002279 2002279 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 24 ; known ; N/A GL192525.1 samtools variation 2003783 2003783 . . . alleles " G A"; frequencies " 0.737704918032787 0.262295081967213"; depth 61 ; unknown ; N/A GL192525.1 samtools variation 2004710 2004710 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192525.1 samtools variation 2004737 2004737 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 40 ; unknown ; N/A GL192525.1 samtools variation 2006281 2006281 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 50 ; known ; N/A GL192525.1 samtools variation 2006855 2006855 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 35 ; known ; N/A GL192525.1 samtools variation 2007077 2007077 . . . alleles " A G"; frequencies " 0.229166666666667 0.770833333333333"; depth 48 ; known ; N/A GL192525.1 samtools variation 2007141 2007141 . . . alleles " G A"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; known ; N/A GL192525.1 samtools variation 2007399 2007399 . . . alleles " G A"; frequencies " 0.73469387755102 0.26530612244898"; depth 49 ; known ; N/A GL192525.1 samtools variation 2007412 2007412 . . . alleles " A G"; frequencies " 0.703703703703704 0.296296296296296"; depth 54 ; known ; N/A GL192525.1 samtools variation 2008504 2008504 . . . alleles " C T"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL192525.1 samtools variation 2008822 2008822 . . . alleles " C T"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192525.1 samtools variation 2008857 2008857 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192525.1 samtools variation 2010203 2010203 . . . alleles " A G"; frequencies " 0.58974358974359 0.41025641025641"; depth 78 ; known ; N/A GL192525.1 samtools variation 2013556 2013556 . . . alleles " C T"; frequencies " 0.493150684931507 0.506849315068493"; depth 73 ; known ; N/A GL192525.1 samtools variation 2013881 2013881 . . . alleles " C T"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; known ; N/A GL192525.1 samtools variation 2014147 2014147 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192525.1 samtools variation 2014159 2014159 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192525.1 samtools variation 2015965 2015965 . . . alleles " G A"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL192525.1 samtools variation 2015971 2015971 . . . alleles " T C"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL192525.1 samtools variation 2016340 2016340 . . . alleles " A G"; frequencies " 0.215384615384615 0.784615384615385"; depth 65 ; known ; N/A GL192525.1 samtools variation 2018257 2018257 . . . alleles " C G"; frequencies " 0.754033844942936 0.245966155057064"; depth 2541 ; known ; synonymous GL192525.1 samtools variation 2019011 2019011 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192525.1 samtools variation 2019025 2019025 . . . alleles " T G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192525.1 samtools variation 2019696 2019696 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192525.1 samtools variation 2020729 2020729 . . . alleles " C T"; frequencies " 0.705445544554455 0.294554455445545"; depth 2020 ; known ; N/A GL192525.1 samtools variation 2020945 2020945 . . . alleles " C T"; frequencies " 0.478175576262874 0.521824423737126"; depth 2039 ; known ; N/A GL192525.1 samtools variation 2021740 2021740 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 110 ; known ; N/A GL192525.1 samtools variation 2021797 2021797 . . . alleles " T C"; frequencies " 0.661538461538462 0.338461538461538"; depth 65 ; known ; N/A GL192525.1 samtools variation 2022138 2022138 . . . alleles " C T"; frequencies " 0.395348837209302 0.604651162790698"; depth 86 ; known ; N/A GL192525.1 samtools variation 2023769 2023769 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192525.1 samtools variation 2023786 2023786 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192525.1 samtools variation 2024346 2024346 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192525.1 samtools variation 2024554 2024554 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192525.1 samtools variation 2024640 2024640 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192525.1 samtools variation 2024820 2024820 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192525.1 samtools variation 2025121 2025121 . . . alleles " G A"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL192525.1 samtools variation 2025192 2025192 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 66 ; known ; N/A GL192525.1 samtools variation 2025254 2025254 . . . alleles " C T"; frequencies " 0.283783783783784 0.716216216216216"; depth 74 ; known ; N/A GL192525.1 samtools variation 2025301 2025301 . . . alleles " G T"; frequencies " 0.685393258426966 0.314606741573034"; depth 89 ; known ; N/A GL192525.1 samtools variation 2025341 2025341 . . . alleles " C A"; frequencies " 0.344262295081967 0.655737704918033"; depth 61 ; known ; N/A GL192525.1 samtools variation 2025648 2025648 . . . alleles " A G"; frequencies " 0.627906976744186 0.372093023255814"; depth 43 ; known ; N/A GL192525.1 samtools variation 2025728 2025728 . . . alleles " G T"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; known ; N/A GL192525.1 samtools variation 2025782 2025782 . . . alleles " A G"; frequencies " 0.304347826086957 0.695652173913043"; depth 46 ; known ; N/A GL192525.1 samtools variation 2025882 2025882 . . . alleles " A T"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; known ; N/A GL192525.1 samtools variation 2026194 2026194 . . . alleles " A G"; frequencies " 0.542168674698795 0.457831325301205"; depth 83 ; known ; N/A GL192525.1 samtools variation 2026273 2026273 . . . alleles " C T"; frequencies " 0.41025641025641 0.58974358974359"; depth 78 ; known ; N/A GL192525.1 samtools variation 2026418 2026418 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL192525.1 samtools variation 2026987 2026987 . . . alleles " C A"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL192525.1 samtools variation 2027278 2027278 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192525.1 samtools variation 2036227 2036227 . . . alleles " A G"; frequencies " 0.688311688311688 0.311688311688312"; depth 154 ; unknown ; non-synonymous GL192525.1 samtools variation 2036615 2036615 . . . alleles " A T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192525.1 samtools variation 2056722 2056722 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192525.1 samtools variation 2057128 2057128 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192525.1 samtools variation 2057376 2057376 . . . alleles " A T"; frequencies " 0.457627118644068 0.542372881355932"; depth 59 ; unknown ; synonymous GL192525.1 samtools variation 2057448 2057448 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 56 ; unknown ; synonymous GL192525.1 samtools variation 2061667 2061667 . . . alleles " C A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192525.1 samtools variation 2061799 2061799 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL192525.1 samtools variation 2062227 2062227 . . . alleles " G A"; frequencies " 0.614035087719298 0.385964912280702"; depth 114 ; unknown ; synonymous GL192525.1 samtools variation 2062917 2062917 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192525.1 samtools variation 2062956 2062956 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192525.1 samtools variation 2063704 2063704 . . . alleles " T C"; frequencies " 0.436363636363636 0.563636363636364"; depth 55 ; unknown ; N/A GL192525.1 samtools variation 2065652 2065652 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192525.1 samtools variation 2065730 2065730 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192525.1 samtools variation 2079042 2079042 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192525.1 samtools variation 2079757 2079757 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192525.1 samtools variation 2080708 2080708 . . . alleles " C A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192525.1 samtools variation 2119026 2119026 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 51 ; known ; synonymous GL192525.1 samtools variation 2119476 2119476 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192525.1 samtools variation 2128005 2128005 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192525.1 samtools variation 2128710 2128710 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192525.1 samtools variation 2158856 2158856 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 55 ; known ; N/A GL192525.1 samtools variation 2159703 2159703 . . . alleles " T C"; frequencies " 0.471428571428571 0.528571428571429"; depth 140 ; known ; N/A GL192525.1 samtools variation 2160663 2160663 . . . alleles " G T"; frequencies " 0.470588235294118 0.529411764705882"; depth 102 ; unknown ; N/A GL192525.1 samtools variation 2164051 2164051 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 28 ; known ; N/A GL192525.1 samtools variation 2171102 2171102 . . . alleles " G T"; frequencies " 0.67741935483871 0.32258064516129"; depth 62 ; known ; N/A GL192525.1 samtools variation 2171322 2171322 . . . alleles " C T"; frequencies " 0.488372093023256 0.511627906976744"; depth 86 ; unknown ; N/A GL192525.1 samtools variation 2175793 2175793 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192525.1 samtools variation 2176320 2176320 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; unknown ; N/A GL192525.1 samtools variation 2176349 2176349 . . . alleles " G A"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; N/A GL192525.1 samtools variation 2183738 2183738 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192525.1 samtools variation 2183931 2183931 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192525.1 samtools variation 2184336 2184336 . . . alleles " C G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192526.1 samtools variation 1314543 1314543 . . . alleles " T G"; frequencies " 0.357142857142857 0.642857142857143"; depth 56 ; unknown ; N/A GL192526.1 samtools variation 1315300 1315300 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL192526.1 samtools variation 1322172 1322172 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192526.1 samtools variation 1326969 1326969 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192526.1 samtools variation 1330461 1330461 . . . alleles " A T"; frequencies " 0.326315789473684 0.673684210526316"; depth 95 ; unknown ; non-synonymous GL192526.1 samtools variation 1353040 1353040 . . . alleles " T C"; frequencies " 0.355555555555556 0.644444444444444"; depth 45 ; unknown ; synonymous GL192526.1 samtools variation 1372314 1372314 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192526.1 samtools variation 1402081 1402081 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 56 ; unknown ; N/A GL192526.1 samtools variation 1421426 1421426 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192526.1 samtools variation 1421459 1421459 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; known ; N/A GL192526.1 samtools variation 1421742 1421742 . . . alleles " C T"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; non-synonymous GL192526.1 samtools variation 1421840 1421840 . . . alleles " G A"; frequencies " 0.63013698630137 0.36986301369863"; depth 73 ; unknown ; synonymous GL192526.1 samtools variation 1434781 1434781 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL192526.1 samtools variation 1436312 1436312 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192526.1 samtools variation 1437789 1437789 . . . alleles " C G"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; known ; N/A GL192526.1 samtools variation 1438198 1438198 . . . alleles " G A"; frequencies " 0.796875 0.203125"; depth 64 ; unknown ; N/A GL192526.1 samtools variation 1471846 1471846 . . . alleles " C T"; frequencies " 0.615819209039548 0.384180790960452"; depth 177 ; unknown ; N/A GL192526.1 samtools variation 1472034 1472034 . . . alleles " T G"; frequencies " 0.793103448275862 0.206896551724138"; depth 58 ; known ; N/A GL192526.1 samtools variation 1679998 1679998 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192526.1 samtools variation 1680516 1680516 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192526.1 samtools variation 1684253 1684253 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192526.1 samtools variation 1684307 1684307 . . . alleles " C T"; frequencies " 0.71875 0.28125"; depth 64 ; known ; N/A GL192526.1 samtools variation 1684609 1684609 . . . alleles " C T"; frequencies " 0.709090909090909 0.290909090909091"; depth 55 ; unknown ; N/A GL192526.1 samtools variation 1692106 1692106 . . . alleles " G C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192526.1 samtools variation 1693970 1693970 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192526.1 samtools variation 1694527 1694527 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192526.1 samtools variation 1701467 1701467 . . . alleles " T C"; frequencies " 0.479166666666667 0.520833333333333"; depth 48 ; known ; N/A GL192526.1 samtools variation 1705743 1705743 . . . alleles " C T"; frequencies " 0.64 0.36"; depth 25 ; unknown ; non-synonymous GL192526.1 samtools variation 1706521 1706521 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; known ; non-synonymous GL192526.1 samtools variation 1707555 1707555 . . . alleles " C T"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; N/A GL192526.1 samtools variation 1730066 1730066 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192526.1 samtools variation 1734037 1734037 . . . alleles " C T"; frequencies " 0.768115942028985 0.231884057971014"; depth 69 ; unknown ; N/A GL192526.1 samtools variation 1762117 1762117 . . . alleles " T C"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; non-synonymous GL192526.1 samtools variation 1763338 1763338 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; unknown ; synonymous GL192526.1 samtools variation 1766302 1766302 . . . alleles " T C"; frequencies " 0.409090909090909 0.590909090909091"; depth 44 ; known ; non-synonymous GL192526.1 samtools variation 1766465 1766465 . . . alleles " A G"; frequencies " 0.27536231884058 0.72463768115942"; depth 69 ; known ; synonymous GL192526.1 samtools variation 1788319 1788319 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192526.1 samtools variation 1790634 1790634 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 55 ; unknown ; non-synonymous GL192526.1 samtools variation 1790844 1790844 . . . alleles " G A"; frequencies " 0.709677419354839 0.290322580645161"; depth 62 ; known ; synonymous GL192526.1 samtools variation 1878063 1878063 . . . alleles " G A"; frequencies " 0.747252747252747 0.252747252747253"; depth 91 ; unknown ; synonymous GL192526.1 samtools variation 1878469 1878469 . . . alleles " C T"; frequencies " 0.590361445783133 0.409638554216867"; depth 83 ; unknown ; synonymous GL192526.1 samtools variation 1880011 1880011 . . . alleles " G C"; frequencies " 0.590361445783133 0.409638554216867"; depth 83 ; unknown ; non-synonymous GL192526.1 samtools variation 1893027 1893027 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192526.1 samtools variation 1895967 1895967 . . . alleles " A G"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; known ; N/A GL192526.1 samtools variation 1898152 1898152 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; known ; N/A GL192526.1 samtools variation 1898249 1898249 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL192526.1 samtools variation 1898781 1898781 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; known ; N/A GL192526.1 samtools variation 1899021 1899021 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192526.1 samtools variation 1906344 1906344 . . . alleles " C T"; frequencies " 0.580952380952381 0.419047619047619"; depth 105 ; known ; synonymous GL192526.1 samtools variation 1909040 1909040 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; unknown ; N/A GL192526.1 samtools variation 1968600 1968600 . . . alleles " G C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; non-synonymous GL192526.1 samtools variation 2030993 2030993 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; synonymous GL192526.1 samtools variation 2076891 2076891 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; synonymous GL192526.1 samtools variation 2186569 2186569 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192527.1 samtools variation 340217 340217 . . . alleles " G A"; frequencies " 0.543103448275862 0.456896551724138"; depth 116 ; unknown ; N/A GL192527.1 samtools variation 1203362 1203362 . . . alleles " T C"; frequencies " 0.210526315789474 0.789473684210526"; depth 38 ; known ; non-synonymous GL192527.1 samtools variation 1208226 1208226 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; known ; non-synonymous GL192527.1 samtools variation 1214493 1214493 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; non-synonymous GL192527.1 samtools variation 1327095 1327095 . . . alleles " A G"; frequencies " 0.473880597014925 0.526119402985075"; depth 268 ; known ; N/A GL192527.1 samtools variation 1458213 1458213 . . . alleles " T C"; frequencies " 0.436363636363636 0.563636363636364"; depth 110 ; known ; synonymous GL192527.1 samtools variation 1506369 1506369 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192527.1 samtools variation 1538977 1538977 . . . alleles " C T"; frequencies " 0.796116504854369 0.203883495145631"; depth 103 ; unknown ; non-synonymous GL192527.1 samtools variation 1793058 1793058 . . . alleles " T A"; frequencies " 0.748091603053435 0.251908396946565"; depth 131 ; unknown ; N/A GL192527.1 samtools variation 1793273 1793273 . . . alleles " G A"; frequencies " 0.277777777777778 0.722222222222222"; depth 36 ; known ; N/A GL192527.1 samtools variation 1793521 1793521 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192527.1 samtools variation 1795353 1795353 . . . alleles " C T"; frequencies " 0.779661016949153 0.220338983050847"; depth 59 ; unknown ; N/A GL192527.1 samtools variation 1840817 1840817 . . . alleles " G T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192527.1 samtools variation 1840874 1840874 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192527.1 samtools variation 1857589 1857589 . . . alleles " C A"; frequencies " 0.661016949152542 0.338983050847458"; depth 59 ; unknown ; N/A GL192527.1 samtools variation 1861282 1861282 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192527.1 samtools variation 1861296 1861296 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192527.1 samtools variation 1861924 1861924 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; synonymous GL192527.1 samtools variation 1865135 1865135 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; N/A GL192527.1 samtools variation 2041391 2041391 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192527.1 samtools variation 2041655 2041655 . . . alleles " T C"; frequencies " 0.716981132075472 0.283018867924528"; depth 53 ; unknown ; N/A GL192527.1 samtools variation 2044495 2044495 . . . alleles " G A"; frequencies " 0.78494623655914 0.21505376344086"; depth 93 ; unknown ; N/A GL192527.1 samtools variation 2044828 2044828 . . . alleles " A T"; frequencies " 0.60377358490566 0.39622641509434"; depth 53 ; known ; N/A GL192527.1 samtools variation 2044844 2044844 . . . alleles " T C"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; known ; N/A GL192527.1 samtools variation 2049297 2049297 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192528.1 samtools variation 1579377 1579377 . . . alleles " A G"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192528.1 samtools variation 1589948 1589948 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192528.1 samtools variation 1591713 1591713 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 69 ; unknown ; N/A GL192528.1 samtools variation 1595463 1595463 . . . alleles " G C"; frequencies " 0.278846153846154 0.721153846153846"; depth 104 ; unknown ; synonymous GL192528.1 samtools variation 1786914 1786914 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192528.1 samtools variation 1787425 1787425 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192528.1 samtools variation 1787801 1787801 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192528.1 samtools variation 1788389 1788389 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192528.1 samtools variation 1788497 1788497 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192528.1 samtools variation 1788655 1788655 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192528.1 samtools variation 1789888 1789888 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192528.1 samtools variation 1790481 1790481 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; synonymous GL192528.1 samtools variation 1794581 1794581 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192528.1 samtools variation 1824938 1824938 . . . alleles " C T"; frequencies " 0.506849315068493 0.493150684931507"; depth 73 ; unknown ; N/A GL192528.1 samtools variation 1825114 1825114 . . . alleles " C T"; frequencies " 0.602409638554217 0.397590361445783"; depth 83 ; unknown ; N/A GL192528.1 samtools variation 1825255 1825255 . . . alleles " T A"; frequencies " 0.641509433962264 0.358490566037736"; depth 53 ; unknown ; N/A GL192528.1 samtools variation 1833064 1833064 . . . alleles " T C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192528.1 samtools variation 1835552 1835552 . . . alleles " A G"; frequencies " 0.713754646840149 0.286245353159851"; depth 538 ; unknown ; N/A GL192528.1 samtools variation 1839805 1839805 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192528.1 samtools variation 1893836 1893836 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192528.1 samtools variation 1897051 1897051 . . . alleles " C A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192528.1 samtools variation 1898872 1898872 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192528.1 samtools variation 1917638 1917638 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192528.1 samtools variation 1920762 1920762 . . . alleles " A T"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; unknown ; N/A GL192528.1 samtools variation 1921312 1921312 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192528.1 samtools variation 1933587 1933587 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL192528.1 samtools variation 1934073 1934073 . . . alleles " G A"; frequencies " 0.717647058823529 0.282352941176471"; depth 85 ; unknown ; synonymous GL192528.1 samtools variation 2078464 2078464 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192528.1 samtools variation 2080744 2080744 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192528.1 samtools variation 2081892 2081892 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192529.1 samtools variation 337353 337353 . . . alleles " T G"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192529.1 samtools variation 337829 337829 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192529.1 samtools variation 381620 381620 . . . alleles " A C"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; unknown ; N/A GL192529.1 samtools variation 391747 391747 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192529.1 samtools variation 399417 399417 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 40 ; unknown ; non-synonymous GL192529.1 samtools variation 402337 402337 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 52 ; unknown ; non-synonymous GL192529.1 samtools variation 405391 405391 . . . alleles " T A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192529.1 samtools variation 484708 484708 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192529.1 samtools variation 487081 487081 . . . alleles " C T"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; non-synonymous GL192529.1 samtools variation 519933 519933 . . . alleles " A G"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL192529.1 samtools variation 630533 630533 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; synonymous GL192529.1 samtools variation 677899 677899 . . . alleles " T C"; frequencies " 0.720588235294118 0.279411764705882"; depth 68 ; unknown ; synonymous GL192529.1 samtools variation 685099 685099 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192529.1 samtools variation 685819 685819 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192529.1 samtools variation 693406 693406 . . . alleles " A T"; frequencies " 0.533333333333333 0.466666666666667"; depth 45 ; unknown ; non-synonymous GL192529.1 samtools variation 694894 694894 . . . alleles " C A"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; N/A GL192529.1 samtools variation 694902 694902 . . . alleles " C T"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; unknown ; N/A GL192529.1 samtools variation 704992 704992 . . . alleles " C G"; frequencies " 0.69061876247505 0.30938123752495"; depth 501 ; unknown ; non-synonymous GL192529.1 samtools variation 709561 709561 . . . alleles " T A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192529.1 samtools variation 719829 719829 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192529.1 samtools variation 720443 720443 . . . alleles " A G"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192529.1 samtools variation 787994 787994 . . . alleles " G C"; frequencies " 0.472727272727273 0.527272727272727"; depth 55 ; unknown ; N/A GL192529.1 samtools variation 788185 788185 . . . alleles " G A"; frequencies " 0.458333333333333 0.541666666666667"; depth 48 ; unknown ; N/A GL192529.1 samtools variation 788389 788389 . . . alleles " C G"; frequencies " 0.283185840707965 0.716814159292035"; depth 113 ; unknown ; N/A GL192529.1 samtools variation 788528 788528 . . . alleles " G A"; frequencies " 0.407407407407407 0.592592592592593"; depth 54 ; unknown ; N/A GL192529.1 samtools variation 788585 788585 . . . alleles " A T"; frequencies " 0.433962264150943 0.566037735849057"; depth 53 ; unknown ; N/A GL192529.1 samtools variation 788810 788810 . . . alleles " C T"; frequencies " 0.685714285714286 0.314285714285714"; depth 70 ; unknown ; N/A GL192529.1 samtools variation 788851 788851 . . . alleles " G A"; frequencies " 0.358974358974359 0.641025641025641"; depth 39 ; unknown ; N/A GL192529.1 samtools variation 788894 788894 . . . alleles " C G"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; unknown ; N/A GL192529.1 samtools variation 788924 788924 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192529.1 samtools variation 789005 789005 . . . alleles " G A"; frequencies " 0.755102040816326 0.244897959183673"; depth 49 ; unknown ; N/A GL192529.1 samtools variation 891382 891382 . . . alleles " C A"; frequencies " 0.781818181818182 0.218181818181818"; depth 275 ; unknown ; synonymous GL192529.1 samtools variation 1057376 1057376 . . . alleles " G A"; frequencies " 0.23728813559322 0.76271186440678"; depth 59 ; known ; N/A GL192529.1 samtools variation 1057384 1057384 . . . alleles " A C"; frequencies " 0.311111111111111 0.688888888888889"; depth 45 ; known ; N/A GL192529.1 samtools variation 1449659 1449659 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 35 ; unknown ; N/A GL192529.1 samtools variation 1449778 1449778 . . . alleles " T C"; frequencies " 0.64 0.36"; depth 25 ; unknown ; synonymous GL192529.1 samtools variation 1449798 1449798 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; non-synonymous GL192529.1 samtools variation 1449801 1449801 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 25 ; unknown ; synonymous GL192529.1 samtools variation 1455231 1455231 . . . alleles " C T"; frequencies " 0.280487804878049 0.719512195121951"; depth 82 ; unknown ; non-synonymous GL192529.1 samtools variation 1455258 1455258 . . . alleles " T A"; frequencies " 0.631578947368421 0.368421052631579"; depth 95 ; unknown ; non-synonymous GL192529.1 samtools variation 1456077 1456077 . . . alleles " C T"; frequencies " 0.236363636363636 0.763636363636364"; depth 110 ; unknown ; synonymous GL192529.1 samtools variation 1465586 1465586 . . . alleles " C T"; frequencies " 0.744186046511628 0.255813953488372"; depth 172 ; unknown ; non-synonymous GL192529.1 samtools variation 1535574 1535574 . . . alleles " T C"; frequencies " 0.261904761904762 0.738095238095238"; depth 42 ; known ; non-synonymous GL192530.1 samtools variation 226806 226806 . . . alleles " C A"; frequencies " 0.746268656716418 0.253731343283582"; depth 67 ; known ; N/A GL192530.1 samtools variation 227083 227083 . . . alleles " C T"; frequencies " 0.720469552457814 0.279530447542186"; depth 1363 ; known ; N/A GL192530.1 samtools variation 228343 228343 . . . alleles " T C"; frequencies " 0.322469982847341 0.676672384219554"; depth 1166 ; known ; N/A GL192530.1 samtools variation 229860 229860 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192530.1 samtools variation 267396 267396 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192530.1 samtools variation 355336 355336 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192530.1 samtools variation 814075 814075 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192530.1 samtools variation 816066 816066 . . . alleles " C T"; frequencies " 0.693548387096774 0.306451612903226"; depth 124 ; unknown ; N/A GL192530.1 samtools variation 818102 818102 . . . alleles " C G"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; known ; N/A GL192530.1 samtools variation 819517 819517 . . . alleles " T C"; frequencies " 0.567164179104478 0.432835820895522"; depth 67 ; known ; N/A GL192530.1 samtools variation 819702 819702 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192530.1 samtools variation 819945 819945 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 34 ; unknown ; N/A GL192530.1 samtools variation 823229 823229 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL192530.1 samtools variation 823807 823807 . . . alleles " G C"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; unknown ; N/A GL192530.1 samtools variation 842161 842161 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; N/A GL192530.1 samtools variation 843084 843084 . . . alleles " C T"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192530.1 samtools variation 843092 843092 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192530.1 samtools variation 890797 890797 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192530.1 samtools variation 950934 950934 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 46 ; unknown ; N/A GL192530.1 samtools variation 1083132 1083132 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 87 ; unknown ; non-synonymous GL192530.1 samtools variation 1116110 1116110 . . . alleles " T C"; frequencies " 0.574074074074074 0.425925925925926"; depth 54 ; unknown ; synonymous GL192530.1 samtools variation 1210587 1210587 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192530.1 samtools variation 1228026 1228026 . . . alleles " C T"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192530.1 samtools variation 1229829 1229829 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192530.1 samtools variation 1231478 1231478 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192530.1 samtools variation 1509336 1509336 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192530.1 samtools variation 1554740 1554740 . . . alleles " G T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192530.1 samtools variation 1557394 1557394 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL192530.1 samtools variation 1557435 1557435 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192530.1 samtools variation 1557707 1557707 . . . alleles " G A"; frequencies " 0.56140350877193 0.43859649122807"; depth 57 ; unknown ; N/A GL192530.1 samtools variation 1562312 1562312 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL192530.1 samtools variation 1567825 1567825 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192530.1 samtools variation 1573966 1573966 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192530.1 samtools variation 1574123 1574123 . . . alleles " A C"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; known ; N/A GL192530.1 samtools variation 1583651 1583651 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192530.1 samtools variation 1587826 1587826 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192530.1 samtools variation 1587872 1587872 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192530.1 samtools variation 1593633 1593633 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 87 ; unknown ; N/A GL192530.1 samtools variation 1597055 1597055 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192530.1 samtools variation 1597646 1597646 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192530.1 samtools variation 1633847 1633847 . . . alleles " T A"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192530.1 samtools variation 1633853 1633853 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192530.1 samtools variation 1651716 1651716 . . . alleles " C T"; frequencies " 0.774941995359629 0.225058004640371"; depth 431 ; unknown ; synonymous GL192530.1 samtools variation 1653662 1653662 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192530.1 samtools variation 1655166 1655166 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192530.1 samtools variation 1666194 1666194 . . . alleles " G T"; frequencies " 0.731617647058823 0.268382352941176"; depth 272 ; unknown ; N/A GL192530.1 samtools variation 1947503 1947503 . . . alleles " T A"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192530.1 samtools variation 1954507 1954507 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192530.1 samtools variation 2059576 2059576 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192531.1 samtools variation 724975 724975 . . . alleles " C G"; frequencies " 0.32620320855615 0.67379679144385"; depth 187 ; unknown ; N/A GL192531.1 samtools variation 727657 727657 . . . alleles " C G"; frequencies " 0.292307692307692 0.707692307692308"; depth 130 ; unknown ; synonymous GL192531.1 samtools variation 732340 732340 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 108 ; unknown ; synonymous GL192531.1 samtools variation 754490 754490 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 246 ; unknown ; synonymous GL192531.1 samtools variation 796260 796260 . . . alleles " C T"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; unknown ; N/A GL192531.1 samtools variation 1012790 1012790 . . . alleles " T G"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; synonymous GL192531.1 samtools variation 1051747 1051747 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 49 ; unknown ; synonymous GL192531.1 samtools variation 1140484 1140484 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192531.1 samtools variation 1144277 1144277 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; N/A GL192531.1 samtools variation 1144349 1144349 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 32 ; known ; N/A GL192531.1 samtools variation 1146486 1146486 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192531.1 samtools variation 1146546 1146546 . . . alleles " A T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL192531.1 samtools variation 1147511 1147511 . . . alleles " A C"; frequencies " 0.305555555555556 0.694444444444444"; depth 36 ; known ; N/A GL192531.1 samtools variation 1147799 1147799 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 57 ; unknown ; N/A GL192531.1 samtools variation 1148002 1148002 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192531.1 samtools variation 1148057 1148057 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192531.1 samtools variation 1148580 1148580 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192531.1 samtools variation 1148761 1148761 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192531.1 samtools variation 1149121 1149121 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 20 ; known ; N/A GL192531.1 samtools variation 1149369 1149369 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; known ; N/A GL192531.1 samtools variation 1149424 1149424 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 48 ; known ; N/A GL192531.1 samtools variation 1150150 1150150 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 52 ; unknown ; N/A GL192531.1 samtools variation 1150360 1150360 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192531.1 samtools variation 1150445 1150445 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL192531.1 samtools variation 1150909 1150909 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL192531.1 samtools variation 1150952 1150952 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192531.1 samtools variation 1332213 1332213 . . . alleles " G C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192531.1 samtools variation 1335439 1335439 . . . alleles " G A"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; known ; synonymous GL192531.1 samtools variation 1339019 1339019 . . . alleles " T C"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; known ; N/A GL192531.1 samtools variation 1339709 1339709 . . . alleles " C T"; frequencies " 0.234042553191489 0.765957446808511"; depth 47 ; known ; N/A GL192531.1 samtools variation 1340232 1340232 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192531.1 samtools variation 1342426 1342426 . . . alleles " G A"; frequencies " 0.757575757575758 0.242424242424242"; depth 66 ; known ; non-synonymous GL192531.1 samtools variation 1342586 1342586 . . . alleles " G A"; frequencies " 0.304597701149425 0.695402298850575"; depth 174 ; known ; synonymous GL192531.1 samtools variation 1342855 1342855 . . . alleles " C T"; frequencies " 0.752808988764045 0.247191011235955"; depth 178 ; known ; N/A GL192531.1 samtools variation 1343704 1343704 . . . alleles " G T"; frequencies " 0.266666666666667 0.733333333333333"; depth 150 ; known ; N/A GL192531.1 samtools variation 1344006 1344006 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 165 ; known ; N/A GL192531.1 samtools variation 1344099 1344099 . . . alleles " G C"; frequencies " 0.272340425531915 0.727659574468085"; depth 235 ; known ; N/A GL192531.1 samtools variation 1344281 1344281 . . . alleles " A G"; frequencies " 0.348101265822785 0.651898734177215"; depth 316 ; known ; N/A GL192531.1 samtools variation 1344757 1344757 . . . alleles " T C"; frequencies " 0.233333333333333 0.766666666666667"; depth 120 ; unknown ; N/A GL192531.1 samtools variation 1344758 1344758 . . . alleles " G T"; frequencies " 0.239669421487603 0.760330578512397"; depth 121 ; unknown ; N/A GL192531.1 samtools variation 1345158 1345158 . . . alleles " C T"; frequencies " 0.732758620689655 0.267241379310345"; depth 116 ; known ; N/A GL192531.1 samtools variation 1345343 1345343 . . . alleles " G A"; frequencies " 0.377049180327869 0.622950819672131"; depth 183 ; known ; N/A GL192531.1 samtools variation 1346585 1346585 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 104 ; known ; N/A GL192531.1 samtools variation 1347127 1347127 . . . alleles " G A"; frequencies " 0.206349206349206 0.793650793650794"; depth 126 ; unknown ; N/A GL192531.1 samtools variation 1347285 1347285 . . . alleles " C T"; frequencies " 0.738805970149254 0.261194029850746"; depth 134 ; known ; N/A GL192531.1 samtools variation 1347421 1347421 . . . alleles " A G"; frequencies " 0.4765625 0.5234375"; depth 128 ; known ; N/A GL192531.1 samtools variation 1349262 1349262 . . . alleles " C T"; frequencies " 0.436860068259386 0.563139931740614"; depth 293 ; unknown ; N/A GL192531.1 samtools variation 1349864 1349864 . . . alleles " C T"; frequencies " 0.647959183673469 0.352040816326531"; depth 196 ; unknown ; N/A GL192531.1 samtools variation 1349924 1349924 . . . alleles " A G"; frequencies " 0.563025210084034 0.436974789915966"; depth 119 ; unknown ; N/A GL192531.1 samtools variation 1351039 1351039 . . . alleles " G A"; frequencies " 0.537832310838446 0.462167689161554"; depth 489 ; unknown ; N/A GL192531.1 samtools variation 1351197 1351197 . . . alleles " A G"; frequencies " 0.609507640067912 0.390492359932088"; depth 589 ; unknown ; N/A GL192531.1 samtools variation 1351598 1351598 . . . alleles " G A"; frequencies " 0.645 0.355"; depth 200 ; unknown ; N/A GL192531.1 samtools variation 1352767 1352767 . . . alleles " T C"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; unknown ; N/A GL192531.1 samtools variation 1356109 1356109 . . . alleles " T C"; frequencies " 0.508426966292135 0.491573033707865"; depth 356 ; unknown ; synonymous GL192531.1 samtools variation 1356975 1356975 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL192531.1 samtools variation 1358603 1358603 . . . alleles " T C"; frequencies " 0.436842105263158 0.563157894736842"; depth 380 ; unknown ; synonymous GL192531.1 samtools variation 1358648 1358648 . . . alleles " G A"; frequencies " 0.66 0.34"; depth 200 ; unknown ; synonymous GL192531.1 samtools variation 1358660 1358660 . . . alleles " C G"; frequencies " 0.66025641025641 0.33974358974359"; depth 156 ; unknown ; synonymous GL192531.1 samtools variation 1358713 1358713 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192531.1 samtools variation 1358903 1358903 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192531.1 samtools variation 1467767 1467767 . . . alleles " T C"; frequencies " 0.212121212121212 0.787878787878788"; depth 33 ; unknown ; N/A GL192531.1 samtools variation 1471544 1471544 . . . alleles " T C"; frequencies " 0.296954314720812 0.703045685279188"; depth 394 ; unknown ; synonymous GL192531.1 samtools variation 1471898 1471898 . . . alleles " G A"; frequencies " 0.735148514851485 0.264851485148515"; depth 404 ; known ; synonymous GL192531.1 samtools variation 1472197 1472197 . . . alleles " T C"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192531.1 samtools variation 1474500 1474500 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192531.1 samtools variation 1479254 1479254 . . . alleles " G A"; frequencies " 0.748344370860927 0.251655629139073"; depth 151 ; unknown ; synonymous GL192531.1 samtools variation 1700973 1700973 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192531.1 samtools variation 1701225 1701225 . . . alleles " G A"; frequencies " 0.763636363636364 0.236363636363636"; depth 55 ; unknown ; N/A GL192531.1 samtools variation 1701331 1701331 . . . alleles " T C"; frequencies " 0.702127659574468 0.297872340425532"; depth 47 ; unknown ; N/A GL192531.1 samtools variation 1703275 1703275 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192531.1 samtools variation 1703621 1703621 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL192531.1 samtools variation 1704105 1704105 . . . alleles " T C"; frequencies " 0.723214285714286 0.276785714285714"; depth 112 ; unknown ; N/A GL192531.1 samtools variation 1704534 1704534 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; N/A GL192531.1 samtools variation 1704772 1704772 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL192531.1 samtools variation 1705481 1705481 . . . alleles " A G"; frequencies " 0.53968253968254 0.46031746031746"; depth 63 ; unknown ; N/A GL192531.1 samtools variation 1705875 1705875 . . . alleles " G A"; frequencies " 0.63573883161512 0.36426116838488"; depth 291 ; unknown ; N/A GL192531.1 samtools variation 1706736 1706736 . . . alleles " C T"; frequencies " 0.655339805825243 0.344660194174757"; depth 412 ; unknown ; N/A GL192531.1 samtools variation 1707065 1707065 . . . alleles " G A"; frequencies " 0.565663474692202 0.43296853625171"; depth 1462 ; unknown ; N/A GL192531.1 samtools variation 1707338 1707338 . . . alleles " C T"; frequencies " 0.443914081145585 0.556085918854415"; depth 419 ; unknown ; N/A GL192531.1 samtools variation 1707680 1707680 . . . alleles " A G"; frequencies " 0.69620253164557 0.30379746835443"; depth 79 ; unknown ; N/A GL192531.1 samtools variation 1707899 1707899 . . . alleles " C A"; frequencies " 0.688888888888889 0.311111111111111"; depth 45 ; unknown ; N/A GL192531.1 samtools variation 1708309 1708309 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192531.1 samtools variation 1723849 1723849 . . . alleles " G A"; frequencies " 0.560975609756098 0.439024390243902"; depth 82 ; unknown ; non-synonymous GL192531.1 samtools variation 1724831 1724831 . . . alleles " G A"; frequencies " 0.649350649350649 0.350649350649351"; depth 77 ; unknown ; synonymous GL192531.1 samtools variation 1725567 1725567 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192531.1 samtools variation 1726231 1726231 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192531.1 samtools variation 1726372 1726372 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192531.1 samtools variation 1728928 1728928 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192531.1 samtools variation 1729411 1729411 . . . alleles " C T"; frequencies " 0.609375 0.390625"; depth 64 ; unknown ; N/A GL192531.1 samtools variation 1737635 1737635 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192531.1 samtools variation 1761022 1761022 . . . alleles " G A"; frequencies " 0.794520547945205 0.205479452054795"; depth 73 ; unknown ; N/A GL192531.1 samtools variation 1761355 1761355 . . . alleles " C T"; frequencies " 0.720588235294118 0.279411764705882"; depth 68 ; unknown ; N/A GL192531.1 samtools variation 1762727 1762727 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL192531.1 samtools variation 1764474 1764474 . . . alleles " T A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192531.1 samtools variation 1780352 1780352 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; unknown ; N/A GL192531.1 samtools variation 1780353 1780353 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 40 ; unknown ; N/A GL192531.1 samtools variation 1780524 1780524 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192531.1 samtools variation 1780600 1780600 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192531.1 samtools variation 1782482 1782482 . . . alleles " C T"; frequencies " 0.7526395173454 0.2473604826546"; depth 663 ; unknown ; synonymous GL192531.1 samtools variation 1782581 1782581 . . . alleles " A G"; frequencies " 0.77504105090312 0.22495894909688"; depth 609 ; unknown ; synonymous GL192531.1 samtools variation 1782617 1782617 . . . alleles " G A"; frequencies " 0.786516853932584 0.213483146067416"; depth 623 ; unknown ; synonymous GL192531.1 samtools variation 1791209 1791209 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192531.1 samtools variation 1791243 1791243 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192531.1 samtools variation 1814639 1814639 . . . alleles " T A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192531.1 samtools variation 1827615 1827615 . . . alleles " A G"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; N/A GL192531.1 samtools variation 1833319 1833319 . . . alleles " T A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192531.1 samtools variation 1835242 1835242 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192531.1 samtools variation 1837183 1837183 . . . alleles " G A"; frequencies " 0.770797962648557 0.229202037351443"; depth 589 ; unknown ; N/A GL192531.1 samtools variation 1939231 1939231 . . . alleles " G A"; frequencies " 0.213913043478261 0.786086956521739"; depth 575 ; unknown ; N/A GL192531.1 samtools variation 1939232 1939232 . . . alleles " G A"; frequencies " 0.213913043478261 0.784347826086957"; depth 575 ; unknown ; N/A GL192532.1 samtools variation 541425 541425 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192532.1 samtools variation 616122 616122 . . . alleles " C G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192532.1 samtools variation 617500 617500 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192532.1 samtools variation 622626 622626 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192532.1 samtools variation 631777 631777 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192532.1 samtools variation 757495 757495 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 39 ; known ; N/A GL192532.1 samtools variation 757597 757597 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 32 ; known ; N/A GL192532.1 samtools variation 757779 757779 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192532.1 samtools variation 757810 757810 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192532.1 samtools variation 760966 760966 . . . alleles " C T"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; known ; synonymous GL192532.1 samtools variation 761122 761122 . . . alleles " G A"; frequencies " 0.566037735849057 0.433962264150943"; depth 106 ; known ; synonymous GL192532.1 samtools variation 761146 761146 . . . alleles " T C"; frequencies " 0.568965517241379 0.431034482758621"; depth 116 ; known ; synonymous GL192532.1 samtools variation 764419 764419 . . . alleles " G A"; frequencies " 0.519230769230769 0.480769230769231"; depth 52 ; known ; synonymous GL192532.1 samtools variation 770479 770479 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192532.1 samtools variation 791420 791420 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192532.1 samtools variation 792633 792633 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL192532.1 samtools variation 796252 796252 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; non-synonymous GL192532.1 samtools variation 1748294 1748294 . . . alleles " A G"; frequencies " 0.580645161290323 0.419354838709677"; depth 62 ; unknown ; N/A GL192532.1 samtools variation 2157765 2157765 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192533.1 samtools variation 965795 965795 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192533.1 samtools variation 998392 998392 . . . alleles " A G"; frequencies " 0.585858585858586 0.414141414141414"; depth 99 ; unknown ; N/A GL192533.1 samtools variation 998665 998665 . . . alleles " C T"; frequencies " 0.558823529411765 0.441176470588235"; depth 170 ; unknown ; N/A GL192533.1 samtools variation 999104 999104 . . . alleles " G T"; frequencies " 0.694915254237288 0.305084745762712"; depth 59 ; unknown ; N/A GL192533.1 samtools variation 999439 999439 . . . alleles " T C"; frequencies " 0.482758620689655 0.517241379310345"; depth 58 ; unknown ; non-synonymous GL192533.1 samtools variation 1035350 1035350 . . . alleles " A G"; frequencies " 0.680555555555556 0.319444444444444"; depth 72 ; unknown ; N/A GL192533.1 samtools variation 1091183 1091183 . . . alleles " A G"; frequencies " 0.233333333333333 0.766666666666667"; depth 30 ; unknown ; N/A GL192533.1 samtools variation 1316751 1316751 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192533.1 samtools variation 1524312 1524312 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192533.1 samtools variation 1627239 1627239 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 84 ; unknown ; synonymous GL192533.1 samtools variation 1639669 1639669 . . . alleles " A G"; frequencies " 0.604651162790698 0.395348837209302"; depth 129 ; unknown ; N/A GL192533.1 samtools variation 1641461 1641461 . . . alleles " G T"; frequencies " 0.56 0.44"; depth 225 ; unknown ; N/A GL192533.1 samtools variation 2036239 2036239 . . . alleles " G T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192533.1 samtools variation 2071305 2071305 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; synonymous GL192534.1 samtools variation 536956 536956 . . . alleles " T C"; frequencies " 0.574074074074074 0.425925925925926"; depth 54 ; unknown ; synonymous GL192534.1 samtools variation 624319 624319 . . . alleles " A G"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; unknown ; N/A GL192534.1 samtools variation 625515 625515 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192534.1 samtools variation 1631916 1631916 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192534.1 samtools variation 1633587 1633587 . . . alleles " T G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192534.1 samtools variation 1634965 1634965 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 30 ; known ; N/A GL192534.1 samtools variation 1652469 1652469 . . . alleles " C T"; frequencies " 0.736111111111111 0.263888888888889"; depth 72 ; unknown ; N/A GL192535.1 samtools variation 34848 34848 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192535.1 samtools variation 37007 37007 . . . alleles " G A"; frequencies " 0.754545454545455 0.245454545454545"; depth 110 ; unknown ; N/A GL192535.1 samtools variation 49793 49793 . . . alleles " A T"; frequencies " 0.8 0.2"; depth 100 ; unknown ; N/A GL192535.1 samtools variation 1593151 1593151 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192535.1 samtools variation 1601017 1601017 . . . alleles " G A"; frequencies " 0.463768115942029 0.536231884057971"; depth 69 ; unknown ; non-synonymous GL192535.1 samtools variation 1914793 1914793 . . . alleles " G T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192536.1 samtools variation 53853 53853 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192536.1 samtools variation 297925 297925 . . . alleles " T C"; frequencies " 0.276536312849162 0.723463687150838"; depth 358 ; known ; N/A GL192536.1 samtools variation 301202 301202 . . . alleles " T G"; frequencies " 0.669144981412639 0.330855018587361"; depth 807 ; unknown ; non-synonymous GL192536.1 samtools variation 306211 306211 . . . alleles " G A"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; N/A GL192536.1 samtools variation 306654 306654 . . . alleles " C A"; frequencies " 0.307692307692308 0.692307692307692"; depth 39 ; known ; N/A GL192536.1 samtools variation 328233 328233 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192536.1 samtools variation 354874 354874 . . . alleles " C A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192536.1 samtools variation 355086 355086 . . . alleles " G T"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; known ; N/A GL192536.1 samtools variation 355870 355870 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192536.1 samtools variation 355882 355882 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192536.1 samtools variation 363623 363623 . . . alleles " C T"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; non-synonymous GL192536.1 samtools variation 367798 367798 . . . alleles " C G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; non-synonymous GL192536.1 samtools variation 580469 580469 . . . alleles " A G"; frequencies " 0.275 0.725"; depth 40 ; known ; synonymous GL192536.1 samtools variation 732736 732736 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192536.1 samtools variation 733235 733235 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL192536.1 samtools variation 733281 733281 . . . alleles " G A"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192536.1 samtools variation 733343 733343 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192536.1 samtools variation 733562 733562 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192536.1 samtools variation 733679 733679 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; N/A GL192536.1 samtools variation 734095 734095 . . . alleles " T C"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL192536.1 samtools variation 757784 757784 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192536.1 samtools variation 758448 758448 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192536.1 samtools variation 759383 759383 . . . alleles " A G"; frequencies " 0.691029900332226 0.308970099667774"; depth 301 ; unknown ; N/A GL192536.1 samtools variation 759445 759445 . . . alleles " T C"; frequencies " 0.440298507462687 0.559701492537313"; depth 134 ; unknown ; N/A GL192536.1 samtools variation 759572 759572 . . . alleles " A C"; frequencies " 0.6484375 0.34765625"; depth 256 ; unknown ; N/A GL192536.1 samtools variation 759976 759976 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 63 ; unknown ; N/A GL192536.1 samtools variation 760056 760056 . . . alleles " A G"; frequencies " 0.550239234449761 0.444976076555024"; depth 209 ; unknown ; N/A GL192536.1 samtools variation 802797 802797 . . . alleles " C T"; frequencies " 0.627340823970037 0.372659176029963"; depth 534 ; known ; N/A GL192536.1 samtools variation 871501 871501 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192536.1 samtools variation 872559 872559 . . . alleles " G A"; frequencies " 0.366197183098592 0.633802816901408"; depth 71 ; known ; N/A GL192536.1 samtools variation 882050 882050 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192536.1 samtools variation 976220 976220 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192536.1 samtools variation 985128 985128 . . . alleles " C A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192536.1 samtools variation 985482 985482 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192536.1 samtools variation 985489 985489 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192536.1 samtools variation 985553 985553 . . . alleles " G A"; frequencies " 0.631474103585657 0.368525896414343"; depth 502 ; unknown ; N/A GL192536.1 samtools variation 986646 986646 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192536.1 samtools variation 986719 986719 . . . alleles " T C"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192536.1 samtools variation 986775 986775 . . . alleles " A G"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL192536.1 samtools variation 987170 987170 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192536.1 samtools variation 987211 987211 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192536.1 samtools variation 987284 987284 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192536.1 samtools variation 989245 989245 . . . alleles " T G"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL192536.1 samtools variation 989453 989453 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192536.1 samtools variation 989520 989520 . . . alleles " T C"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192536.1 samtools variation 989963 989963 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192536.1 samtools variation 990328 990328 . . . alleles " C T"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL192536.1 samtools variation 992110 992110 . . . alleles " G A"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL192536.1 samtools variation 994533 994533 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192536.1 samtools variation 1033170 1033170 . . . alleles " A G"; frequencies " 0.556521739130435 0.443478260869565"; depth 115 ; unknown ; N/A GL192536.1 samtools variation 1035853 1035853 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192536.1 samtools variation 1035878 1035878 . . . alleles " T G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192536.1 samtools variation 1036210 1036210 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192536.1 samtools variation 1037590 1037590 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 35 ; unknown ; N/A GL192536.1 samtools variation 1041293 1041293 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192536.1 samtools variation 1043659 1043659 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192536.1 samtools variation 1043856 1043856 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192536.1 samtools variation 1044680 1044680 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 48 ; unknown ; N/A GL192536.1 samtools variation 1044945 1044945 . . . alleles " C A"; frequencies " 0.53968253968254 0.46031746031746"; depth 63 ; unknown ; N/A GL192536.1 samtools variation 1045097 1045097 . . . alleles " A T"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; unknown ; N/A GL192536.1 samtools variation 1078179 1078179 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192536.1 samtools variation 1086837 1086837 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL192536.1 samtools variation 1086871 1086871 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192536.1 samtools variation 1087725 1087725 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192536.1 samtools variation 1088626 1088626 . . . alleles " C T"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL192536.1 samtools variation 1090768 1090768 . . . alleles " T C"; frequencies " 0.477941176470588 0.522058823529412"; depth 136 ; unknown ; N/A GL192536.1 samtools variation 1091577 1091577 . . . alleles " G A"; frequencies " 0.741379310344828 0.258620689655172"; depth 58 ; unknown ; N/A GL192536.1 samtools variation 1092318 1092318 . . . alleles " G A"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL192536.1 samtools variation 1092799 1092799 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192536.1 samtools variation 1093103 1093103 . . . alleles " A G"; frequencies " 0.753424657534247 0.246575342465753"; depth 73 ; unknown ; N/A GL192536.1 samtools variation 1094649 1094649 . . . alleles " G A"; frequencies " 0.784615384615385 0.215384615384615"; depth 65 ; unknown ; N/A GL192536.1 samtools variation 1094652 1094652 . . . alleles " T C"; frequencies " 0.787878787878788 0.212121212121212"; depth 66 ; unknown ; N/A GL192536.1 samtools variation 1095142 1095142 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; unknown ; N/A GL192536.1 samtools variation 1095853 1095853 . . . alleles " C T"; frequencies " 0.786764705882353 0.213235294117647"; depth 136 ; unknown ; N/A GL192536.1 samtools variation 1097178 1097178 . . . alleles " G T"; frequencies " 0.71 0.29"; depth 100 ; unknown ; N/A GL192536.1 samtools variation 1097183 1097183 . . . alleles " C T"; frequencies " 0.695238095238095 0.304761904761905"; depth 105 ; unknown ; N/A GL192536.1 samtools variation 1100114 1100114 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192536.1 samtools variation 1100464 1100464 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192536.1 samtools variation 1116512 1116512 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL192536.1 samtools variation 1117117 1117117 . . . alleles " C T"; frequencies " 0.24 0.76"; depth 25 ; unknown ; N/A GL192536.1 samtools variation 1119664 1119664 . . . alleles " T C"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL192536.1 samtools variation 1120747 1120747 . . . alleles " C T"; frequencies " 0.274509803921569 0.725490196078431"; depth 51 ; unknown ; N/A GL192536.1 samtools variation 1124542 1124542 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 80 ; unknown ; N/A GL192536.1 samtools variation 1131888 1131888 . . . alleles " T G"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192536.1 samtools variation 1134539 1134539 . . . alleles " G A"; frequencies " 0.653703703703704 0.346296296296296"; depth 540 ; unknown ; synonymous GL192536.1 samtools variation 1137755 1137755 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192536.1 samtools variation 1147283 1147283 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192536.1 samtools variation 1147656 1147656 . . . alleles " A C"; frequencies " 0.59375 0.40625"; depth 32 ; known ; N/A GL192536.1 samtools variation 1147697 1147697 . . . alleles " T C"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; known ; N/A GL192536.1 samtools variation 1148210 1148210 . . . alleles " G A"; frequencies " 0.494505494505495 0.505494505494505"; depth 182 ; known ; N/A GL192536.1 samtools variation 1168867 1168867 . . . alleles " A G"; frequencies " 0.737373737373737 0.262626262626263"; depth 99 ; unknown ; non-synonymous GL192536.1 samtools variation 1203765 1203765 . . . alleles " G A"; frequencies " 0.744186046511628 0.255813953488372"; depth 86 ; unknown ; N/A GL192536.1 samtools variation 1203960 1203960 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL192536.1 samtools variation 1206107 1206107 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192536.1 samtools variation 1277362 1277362 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; synonymous GL192536.1 samtools variation 1299392 1299392 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192536.1 samtools variation 1299458 1299458 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192536.1 samtools variation 1299697 1299697 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; non-synonymous GL192536.1 samtools variation 1498675 1498675 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL192536.1 samtools variation 1507247 1507247 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL192536.1 samtools variation 1516889 1516889 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192536.1 samtools variation 1516939 1516939 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192536.1 samtools variation 1518172 1518172 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192536.1 samtools variation 1520429 1520429 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 39 ; known ; N/A GL192536.1 samtools variation 1520585 1520585 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192536.1 samtools variation 1520604 1520604 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL192536.1 samtools variation 1522057 1522057 . . . alleles " C A"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; known ; N/A GL192536.1 samtools variation 1522300 1522300 . . . alleles " A G"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; known ; N/A GL192536.1 samtools variation 1523193 1523193 . . . alleles " G A"; frequencies " 0.543981481481482 0.456018518518519"; depth 432 ; known ; N/A GL192536.1 samtools variation 1523638 1523638 . . . alleles " C T"; frequencies " 0.475 0.525"; depth 40 ; known ; N/A GL192536.1 samtools variation 1524957 1524957 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 32 ; known ; N/A GL192536.1 samtools variation 1525861 1525861 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 26 ; known ; N/A GL192536.1 samtools variation 1526001 1526001 . . . alleles " T C"; frequencies " 0.451612903225806 0.548387096774194"; depth 62 ; known ; N/A GL192536.1 samtools variation 1526144 1526144 . . . alleles " T G"; frequencies " 0.433962264150943 0.566037735849057"; depth 53 ; unknown ; N/A GL192536.1 samtools variation 1526460 1526460 . . . alleles " T C"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL192536.1 samtools variation 2144711 2144711 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 80 ; known ; synonymous GL192537.1 samtools variation 515308 515308 . . . alleles " A T"; frequencies " 0.666666666666667 0.292181069958848"; depth 243 ; unknown ; N/A GL192537.1 samtools variation 848953 848953 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192537.1 samtools variation 858874 858874 . . . alleles " G A"; frequencies " 0.547619047619048 0.452380952380952"; depth 42 ; unknown ; N/A GL192537.1 samtools variation 859536 859536 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL192537.1 samtools variation 859725 859725 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 45 ; unknown ; N/A GL192537.1 samtools variation 861011 861011 . . . alleles " T C"; frequencies " 0.627450980392157 0.372549019607843"; depth 51 ; unknown ; N/A GL192537.1 samtools variation 866962 866962 . . . alleles " T C"; frequencies " 0.540540540540541 0.459459459459459"; depth 37 ; unknown ; N/A GL192537.1 samtools variation 869650 869650 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192537.1 samtools variation 960695 960695 . . . alleles " A G"; frequencies " 0.37037037037037 0.62962962962963"; depth 54 ; unknown ; N/A GL192537.1 samtools variation 961512 961512 . . . alleles " T C"; frequencies " 0.491525423728814 0.508474576271186"; depth 59 ; unknown ; N/A GL192537.1 samtools variation 966716 966716 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192537.1 samtools variation 970766 970766 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192537.1 samtools variation 972563 972563 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192537.1 samtools variation 998823 998823 . . . alleles " T C"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192537.1 samtools variation 1345894 1345894 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; non-synonymous GL192537.1 samtools variation 1475755 1475755 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 48 ; unknown ; N/A GL192537.1 samtools variation 1477982 1477982 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192537.1 samtools variation 1478727 1478727 . . . alleles " T C"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192537.1 samtools variation 1557100 1557100 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; unknown ; N/A GL192537.1 samtools variation 1558294 1558294 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192537.1 samtools variation 1757434 1757434 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192537.1 samtools variation 1764189 1764189 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192537.1 samtools variation 1767007 1767007 . . . alleles " A T"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; unknown ; N/A GL192539.1 samtools variation 174188 174188 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; non-synonymous GL192539.1 samtools variation 239048 239048 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 48 ; known ; non-synonymous GL192539.1 samtools variation 295000 295000 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL192539.1 samtools variation 295019 295019 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192539.1 samtools variation 301241 301241 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192539.1 samtools variation 304479 304479 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192539.1 samtools variation 378798 378798 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192539.1 samtools variation 1079374 1079374 . . . alleles " T C"; frequencies " 0.456418383518225 0.543581616481775"; depth 631 ; known ; synonymous GL192539.1 samtools variation 1333642 1333642 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; synonymous GL192539.1 samtools variation 1348328 1348328 . . . alleles " C A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; non-synonymous GL192539.1 samtools variation 1352441 1352441 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; synonymous GL192539.1 samtools variation 1352480 1352480 . . . alleles " C A"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; synonymous GL192539.1 samtools variation 1430393 1430393 . . . alleles " T C"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; known ; N/A GL192539.1 samtools variation 1448828 1448828 . . . alleles " C T"; frequencies " 0.414634146341463 0.585365853658537"; depth 41 ; unknown ; N/A GL192539.1 samtools variation 1452580 1452580 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192539.1 samtools variation 1453236 1453236 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192539.1 samtools variation 1454301 1454301 . . . alleles " A G"; frequencies " 0.463917525773196 0.536082474226804"; depth 97 ; unknown ; synonymous GL192539.1 samtools variation 1456116 1456116 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192539.1 samtools variation 1457716 1457716 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192539.1 samtools variation 1612351 1612351 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192539.1 samtools variation 1621930 1621930 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192539.1 samtools variation 1643341 1643341 . . . alleles " T C"; frequencies " 0.778443113772455 0.221556886227545"; depth 167 ; unknown ; non-synonymous GL192539.1 samtools variation 1643948 1643948 . . . alleles " G A"; frequencies " 0.556962025316456 0.443037974683544"; depth 158 ; known ; non-synonymous GL192539.1 samtools variation 1674065 1674065 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192539.1 samtools variation 1691908 1691908 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192539.1 samtools variation 2041297 2041297 . . . alleles " G A"; frequencies " 0.342105263157895 0.657894736842105"; depth 38 ; known ; synonymous GL192539.1 samtools variation 2123942 2123942 . . . alleles " C T"; frequencies " 0.718562874251497 0.281437125748503"; depth 501 ; unknown ; N/A GL192539.1 samtools variation 2124393 2124393 . . . alleles " A G"; frequencies " 0.563636363636364 0.436363636363636"; depth 550 ; known ; synonymous GL192539.1 samtools variation 2124429 2124429 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192539.1 samtools variation 2124468 2124468 . . . alleles " T C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192539.1 samtools variation 2124586 2124586 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 34 ; known ; N/A GL192539.1 samtools variation 2124592 2124592 . . . alleles " C T"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; known ; N/A GL192539.1 samtools variation 2124684 2124684 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL192539.1 samtools variation 2125207 2125207 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192539.1 samtools variation 2125524 2125524 . . . alleles " G A"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; known ; N/A GL192539.1 samtools variation 2125604 2125604 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192539.1 samtools variation 2125731 2125731 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192539.1 samtools variation 2125834 2125834 . . . alleles " A C"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192539.1 samtools variation 2126025 2126025 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192539.1 samtools variation 2127088 2127088 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192539.1 samtools variation 2127146 2127146 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192539.1 samtools variation 2127457 2127457 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192539.1 samtools variation 2127816 2127816 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192539.1 samtools variation 2131156 2131156 . . . alleles " G C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192539.1 samtools variation 2131398 2131398 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192539.1 samtools variation 2132322 2132322 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192539.1 samtools variation 2153816 2153816 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192540.1 samtools variation 716484 716484 . . . alleles " A C"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; known ; synonymous GL192540.1 samtools variation 939534 939534 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192540.1 samtools variation 947506 947506 . . . alleles " C T"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL192540.1 samtools variation 1083450 1083450 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192540.1 samtools variation 1282930 1282930 . . . alleles " C A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; synonymous GL192540.1 samtools variation 1354918 1354918 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192540.1 samtools variation 1358986 1358986 . . . alleles " G C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192540.1 samtools variation 1383721 1383721 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192540.1 samtools variation 1396797 1396797 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192540.1 samtools variation 1404945 1404945 . . . alleles " C A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192540.1 samtools variation 1757471 1757471 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192540.1 samtools variation 1993660 1993660 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192540.1 samtools variation 1998155 1998155 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 24 ; known ; N/A GL192540.1 samtools variation 1999365 1999365 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192540.1 samtools variation 1999413 1999413 . . . alleles " T G"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL192540.1 samtools variation 1999863 1999863 . . . alleles " T C"; frequencies " 0.53125 0.46875"; depth 32 ; known ; N/A GL192540.1 samtools variation 2002285 2002285 . . . alleles " A G"; frequencies " 0.549019607843137 0.450980392156863"; depth 51 ; known ; N/A GL192540.1 samtools variation 2002329 2002329 . . . alleles " G A"; frequencies " 0.558139534883721 0.441860465116279"; depth 43 ; known ; N/A GL192540.1 samtools variation 2059718 2059718 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192541.1 samtools variation 34644 34644 . . . alleles " C A"; frequencies " 0.445945945945946 0.554054054054054"; depth 74 ; unknown ; synonymous GL192541.1 samtools variation 35526 35526 . . . alleles " G A"; frequencies " 0.78494623655914 0.21505376344086"; depth 93 ; unknown ; synonymous GL192541.1 samtools variation 36163 36163 . . . alleles " C T"; frequencies " 0.222222222222222 0.777777777777778"; depth 63 ; unknown ; non-synonymous GL192541.1 samtools variation 37116 37116 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 26 ; unknown ; N/A GL192541.1 samtools variation 37246 37246 . . . alleles " T C"; frequencies " 0.324324324324324 0.675675675675676"; depth 37 ; unknown ; N/A GL192541.1 samtools variation 39129 39129 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192541.1 samtools variation 39130 39130 . . . alleles " T C"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192541.1 samtools variation 39469 39469 . . . alleles " C T"; frequencies " 0.257142857142857 0.742857142857143"; depth 35 ; known ; N/A GL192541.1 samtools variation 41561 41561 . . . alleles " C G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL192541.1 samtools variation 41616 41616 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192541.1 samtools variation 43172 43172 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192541.1 samtools variation 49037 49037 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192541.1 samtools variation 54013 54013 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192541.1 samtools variation 62702 62702 . . . alleles " A G"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; N/A GL192541.1 samtools variation 62800 62800 . . . alleles " G T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192541.1 samtools variation 65197 65197 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192541.1 samtools variation 115860 115860 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192541.1 samtools variation 117952 117952 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192541.1 samtools variation 118533 118533 . . . alleles " A G"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; unknown ; N/A GL192541.1 samtools variation 154381 154381 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; non-synonymous GL192541.1 samtools variation 256504 256504 . . . alleles " T C"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; unknown ; N/A GL192541.1 samtools variation 259264 259264 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 42 ; unknown ; N/A GL192541.1 samtools variation 271834 271834 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192541.1 samtools variation 285202 285202 . . . alleles " T A"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL192541.1 samtools variation 1059328 1059328 . . . alleles " G C"; frequencies " 0.725490196078431 0.274509803921569"; depth 51 ; unknown ; N/A GL192541.1 samtools variation 1059344 1059344 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; unknown ; N/A GL192541.1 samtools variation 2029161 2029161 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL192541.1 samtools variation 2029296 2029296 . . . alleles " A G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; known ; N/A GL192541.1 samtools variation 2029437 2029437 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL192541.1 samtools variation 2080428 2080428 . . . alleles " A G"; frequencies " 0.795031055900621 0.204968944099379"; depth 161 ; unknown ; N/A GL192541.1 samtools variation 2082916 2082916 . . . alleles " C T"; frequencies " 0.794326241134752 0.205673758865248"; depth 141 ; unknown ; non-synonymous GL192541.1 samtools variation 2089099 2089099 . . . alleles " T C"; frequencies " 0.233333333333333 0.766666666666667"; depth 60 ; known ; non-synonymous GL192541.1 samtools variation 2095703 2095703 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 105 ; known ; synonymous GL192541.1 samtools variation 2122909 2122909 . . . alleles " C A"; frequencies " 0.275 0.725"; depth 120 ; known ; non-synonymous GL192542.1 samtools variation 684669 684669 . . . alleles " G A"; frequencies " 0.670212765957447 0.329787234042553"; depth 94 ; unknown ; non-synonymous GL192542.1 samtools variation 693777 693777 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192542.1 samtools variation 734692 734692 . . . alleles " A G"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL192542.1 samtools variation 754362 754362 . . . alleles " G A"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; unknown ; N/A GL192542.1 samtools variation 757492 757492 . . . alleles " A G"; frequencies " 0.296875 0.703125"; depth 64 ; unknown ; N/A GL192542.1 samtools variation 757745 757745 . . . alleles " A G"; frequencies " 0.385964912280702 0.614035087719298"; depth 57 ; unknown ; N/A GL192542.1 samtools variation 757762 757762 . . . alleles " A G"; frequencies " 0.397260273972603 0.602739726027397"; depth 73 ; unknown ; N/A GL192542.1 samtools variation 757874 757874 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 40 ; unknown ; N/A GL192542.1 samtools variation 758198 758198 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192542.1 samtools variation 758559 758559 . . . alleles " T G"; frequencies " 0.267605633802817 0.732394366197183"; depth 71 ; unknown ; N/A GL192542.1 samtools variation 758793 758793 . . . alleles " A T"; frequencies " 0.366336633663366 0.633663366336634"; depth 101 ; unknown ; N/A GL192542.1 samtools variation 759023 759023 . . . alleles " T C"; frequencies " 0.592592592592593 0.407407407407407"; depth 54 ; unknown ; N/A GL192542.1 samtools variation 759077 759077 . . . alleles " T A"; frequencies " 0.651515151515151 0.348484848484849"; depth 66 ; unknown ; N/A GL192542.1 samtools variation 759079 759079 . . . alleles " A T"; frequencies " 0.646153846153846 0.353846153846154"; depth 65 ; unknown ; N/A GL192542.1 samtools variation 759477 759477 . . . alleles " G T"; frequencies " 0.465753424657534 0.534246575342466"; depth 73 ; unknown ; N/A GL192542.1 samtools variation 759602 759602 . . . alleles " T C"; frequencies " 0.57843137254902 0.42156862745098"; depth 102 ; unknown ; N/A GL192542.1 samtools variation 759623 759623 . . . alleles " G A"; frequencies " 0.773584905660377 0.226415094339623"; depth 106 ; unknown ; N/A GL192542.1 samtools variation 759665 759665 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 52 ; unknown ; N/A GL192542.1 samtools variation 759987 759987 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; unknown ; N/A GL192542.1 samtools variation 760172 760172 . . . alleles " C T"; frequencies " 0.38 0.62"; depth 50 ; unknown ; N/A GL192542.1 samtools variation 761129 761129 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192542.1 samtools variation 761333 761333 . . . alleles " T C"; frequencies " 0.343434343434343 0.656565656565657"; depth 99 ; unknown ; N/A GL192542.1 samtools variation 761480 761480 . . . alleles " T C"; frequencies " 0.243243243243243 0.756756756756757"; depth 111 ; unknown ; N/A GL192542.1 samtools variation 761561 761561 . . . alleles " A T"; frequencies " 0.285714285714286 0.714285714285714"; depth 49 ; unknown ; N/A GL192542.1 samtools variation 773108 773108 . . . alleles " C T"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL192542.1 samtools variation 773318 773318 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 40 ; unknown ; N/A GL192542.1 samtools variation 774697 774697 . . . alleles " T C"; frequencies " 0.413793103448276 0.586206896551724"; depth 58 ; unknown ; N/A GL192542.1 samtools variation 776558 776558 . . . alleles " T C"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; synonymous GL192542.1 samtools variation 809254 809254 . . . alleles " G A"; frequencies " 0.74 0.26"; depth 50 ; unknown ; synonymous GL192543.1 samtools variation 1271988 1271988 . . . alleles " T G"; frequencies " 0.649122807017544 0.333333333333333"; depth 57 ; unknown ; N/A GL192543.1 samtools variation 1273118 1273118 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192543.1 samtools variation 1273526 1273526 . . . alleles " T C"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192543.1 samtools variation 1603681 1603681 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 48 ; unknown ; N/A GL192543.1 samtools variation 1605159 1605159 . . . alleles " A G"; frequencies " 0.788235294117647 0.211764705882353"; depth 85 ; unknown ; N/A GL192543.1 samtools variation 1605298 1605298 . . . alleles " G A"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; unknown ; N/A GL192543.1 samtools variation 1606155 1606155 . . . alleles " A T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192543.1 samtools variation 1606855 1606855 . . . alleles " C T"; frequencies " 0.574074074074074 0.425925925925926"; depth 108 ; unknown ; N/A GL192543.1 samtools variation 1607462 1607462 . . . alleles " A G"; frequencies " 0.745098039215686 0.254901960784314"; depth 102 ; unknown ; N/A GL192543.1 samtools variation 1607513 1607513 . . . alleles " A T"; frequencies " 0.774647887323944 0.225352112676056"; depth 71 ; unknown ; N/A GL192543.1 samtools variation 1607523 1607523 . . . alleles " G A"; frequencies " 0.712121212121212 0.287878787878788"; depth 66 ; unknown ; N/A GL192543.1 samtools variation 1609904 1609904 . . . alleles " T C"; frequencies " 0.612903225806452 0.387096774193548"; depth 62 ; unknown ; synonymous GL192543.1 samtools variation 1611301 1611301 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192543.1 samtools variation 1612143 1612143 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192543.1 samtools variation 1612488 1612488 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 50 ; unknown ; N/A GL192543.1 samtools variation 1672125 1672125 . . . alleles " A T"; frequencies " 0.611111111111111 0.333333333333333"; depth 18 ; unknown ; N/A GL192544.1 samtools variation 3366 3366 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL192544.1 samtools variation 4275 4275 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL192544.1 samtools variation 7503 7503 . . . alleles " A G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL192544.1 samtools variation 7608 7608 . . . alleles " A G"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; known ; N/A GL192544.1 samtools variation 7646 7646 . . . alleles " G T"; frequencies " 0.48780487804878 0.51219512195122"; depth 41 ; known ; N/A GL192544.1 samtools variation 8865 8865 . . . alleles " T G"; frequencies " 0.275590551181102 0.724409448818898"; depth 127 ; known ; N/A GL192544.1 samtools variation 9181 9181 . . . alleles " G A"; frequencies " 0.739583333333333 0.260416666666667"; depth 96 ; known ; N/A GL192544.1 samtools variation 9731 9731 . . . alleles " G T"; frequencies " 0.295454545454545 0.704545454545455"; depth 88 ; known ; N/A GL192544.1 samtools variation 10355 10355 . . . alleles " T C"; frequencies " 0.362068965517241 0.637931034482759"; depth 58 ; known ; N/A GL192544.1 samtools variation 10392 10392 . . . alleles " C T"; frequencies " 0.635135135135135 0.364864864864865"; depth 74 ; known ; N/A GL192544.1 samtools variation 10676 10676 . . . alleles " G C"; frequencies " 0.289473684210526 0.710526315789474"; depth 152 ; known ; N/A GL192544.1 samtools variation 10761 10761 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 91 ; known ; N/A GL192544.1 samtools variation 10852 10852 . . . alleles " T C"; frequencies " 0.711764705882353 0.288235294117647"; depth 170 ; known ; N/A GL192544.1 samtools variation 181267 181267 . . . alleles " C T"; frequencies " 0.423076923076923 0.576923076923077"; depth 52 ; unknown ; non-synonymous GL192544.1 samtools variation 384406 384406 . . . alleles " A C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192544.1 samtools variation 384628 384628 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192544.1 samtools variation 451968 451968 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; N/A GL192544.1 samtools variation 452011 452011 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL192544.1 samtools variation 518841 518841 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192544.1 samtools variation 518885 518885 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192544.1 samtools variation 520963 520963 . . . alleles " C T"; frequencies " 0.626666666666667 0.373333333333333"; depth 75 ; unknown ; N/A GL192544.1 samtools variation 747674 747674 . . . alleles " T C"; frequencies " 0.636496350364964 0.363503649635037"; depth 685 ; unknown ; synonymous GL192544.1 samtools variation 895754 895754 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192544.1 samtools variation 899545 899545 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192544.1 samtools variation 1122578 1122578 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; synonymous GL192544.1 samtools variation 1243973 1243973 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192544.1 samtools variation 1244197 1244197 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192544.1 samtools variation 1244200 1244200 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192544.1 samtools variation 1269706 1269706 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192544.1 samtools variation 1269707 1269707 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192544.1 samtools variation 1279037 1279037 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192544.1 samtools variation 1280938 1280938 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192544.1 samtools variation 1281102 1281102 . . . alleles " C G"; frequencies " 0.747474747474748 0.252525252525253"; depth 198 ; unknown ; N/A GL192544.1 samtools variation 1281129 1281129 . . . alleles " G C"; frequencies " 0.748427672955975 0.251572327044025"; depth 159 ; unknown ; N/A GL192544.1 samtools variation 1281240 1281240 . . . alleles " C G"; frequencies " 0.793103448275862 0.206896551724138"; depth 58 ; unknown ; N/A GL192545.1 samtools variation 440024 440024 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; synonymous GL192545.1 samtools variation 448781 448781 . . . alleles " G A"; frequencies " 0.256410256410256 0.743589743589744"; depth 39 ; unknown ; synonymous GL192545.1 samtools variation 456856 456856 . . . alleles " A G"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL192545.1 samtools variation 457363 457363 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192545.1 samtools variation 458342 458342 . . . alleles " A G"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; known ; N/A GL192545.1 samtools variation 508315 508315 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192545.1 samtools variation 826519 826519 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; non-synonymous GL192545.1 samtools variation 829085 829085 . . . alleles " T G"; frequencies " 0.684210526315789 0.210526315789474"; depth 19 ; unknown ; N/A GL192545.1 samtools variation 1091907 1091907 . . . alleles " A T"; frequencies " 0.789473684210526 0.210526315789474"; depth 76 ; unknown ; synonymous GL192545.1 samtools variation 1093426 1093426 . . . alleles " A G"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; unknown ; non-synonymous GL192545.1 samtools variation 1363839 1363839 . . . alleles " T C"; frequencies " 0.211538461538462 0.788461538461538"; depth 208 ; unknown ; N/A GL192545.1 samtools variation 1370238 1370238 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192545.1 samtools variation 1372024 1372024 . . . alleles " G A"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192547.1 samtools variation 148544 148544 . . . alleles " G T"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL192547.1 samtools variation 186105 186105 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL192547.1 samtools variation 221044 221044 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192547.1 samtools variation 281954 281954 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192547.1 samtools variation 648126 648126 . . . alleles " T C"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL192547.1 samtools variation 648293 648293 . . . alleles " T C"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; unknown ; N/A GL192547.1 samtools variation 648330 648330 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 44 ; unknown ; N/A GL192547.1 samtools variation 648382 648382 . . . alleles " C A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192547.1 samtools variation 649534 649534 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192547.1 samtools variation 651591 651591 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; unknown ; N/A GL192547.1 samtools variation 651642 651642 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192547.1 samtools variation 652470 652470 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192547.1 samtools variation 652999 652999 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 50 ; unknown ; N/A GL192547.1 samtools variation 653088 653088 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192547.1 samtools variation 654198 654198 . . . alleles " C G"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192547.1 samtools variation 654727 654727 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192547.1 samtools variation 654729 654729 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192547.1 samtools variation 661756 661756 . . . alleles " C G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192547.1 samtools variation 664382 664382 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192547.1 samtools variation 666834 666834 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192548.1 samtools variation 14646 14646 . . . alleles " A G"; frequencies " 0.563380281690141 0.436619718309859"; depth 71 ; known ; N/A GL192548.1 samtools variation 141769 141769 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL192548.1 samtools variation 141873 141873 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 56 ; known ; N/A GL192548.1 samtools variation 371512 371512 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192548.1 samtools variation 372324 372324 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192548.1 samtools variation 372591 372591 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 51 ; known ; N/A GL192548.1 samtools variation 372684 372684 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL192548.1 samtools variation 374928 374928 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 28 ; known ; N/A GL192548.1 samtools variation 375581 375581 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192548.1 samtools variation 375749 375749 . . . alleles " C T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192548.1 samtools variation 375760 375760 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL192548.1 samtools variation 375792 375792 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL192548.1 samtools variation 375933 375933 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL192548.1 samtools variation 376212 376212 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192548.1 samtools variation 376672 376672 . . . alleles " T A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192548.1 samtools variation 378052 378052 . . . alleles " T C"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; known ; non-synonymous GL192548.1 samtools variation 378155 378155 . . . alleles " T C"; frequencies " 0.592592592592593 0.407407407407407"; depth 54 ; known ; non-synonymous GL192548.1 samtools variation 472179 472179 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192548.1 samtools variation 472671 472671 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192548.1 samtools variation 472785 472785 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192548.1 samtools variation 472877 472877 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; known ; N/A GL192548.1 samtools variation 474044 474044 . . . alleles " C A"; frequencies " 0.650959860383944 0.349040139616056"; depth 573 ; known ; N/A GL192548.1 samtools variation 474496 474496 . . . alleles " A C"; frequencies " 0.393013100436681 0.606986899563319"; depth 458 ; known ; N/A GL192548.1 samtools variation 480098 480098 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192548.1 samtools variation 599316 599316 . . . alleles " A G"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL192549.1 samtools variation 138875 138875 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192549.1 samtools variation 138876 138876 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192549.1 samtools variation 140196 140196 . . . alleles " T G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192549.1 samtools variation 142368 142368 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192549.1 samtools variation 209049 209049 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192549.1 samtools variation 226728 226728 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 54 ; unknown ; synonymous GL192549.1 samtools variation 1393674 1393674 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL192549.1 samtools variation 1393749 1393749 . . . alleles " G A"; frequencies " 0.218181818181818 0.781818181818182"; depth 55 ; known ; N/A GL192549.1 samtools variation 1695539 1695539 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192549.1 samtools variation 1697739 1697739 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 34 ; known ; N/A GL192549.1 samtools variation 1825373 1825373 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL192549.1 samtools variation 1825460 1825460 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192549.1 samtools variation 1838989 1838989 . . . alleles " C T"; frequencies " 0.437275985663082 0.562724014336918"; depth 279 ; unknown ; N/A GL192549.1 samtools variation 1860214 1860214 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 40 ; unknown ; synonymous GL192549.1 samtools variation 1860307 1860307 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 48 ; unknown ; non-synonymous GL192549.1 samtools variation 1952195 1952195 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; non-synonymous GL192549.1 samtools variation 2051951 2051951 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL192549.1 samtools variation 2051993 2051993 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192549.1 samtools variation 2052978 2052978 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192549.1 samtools variation 2055356 2055356 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192549.1 samtools variation 2056453 2056453 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192549.1 samtools variation 2056817 2056817 . . . alleles " C T"; frequencies " 0.596774193548387 0.403225806451613"; depth 62 ; known ; N/A GL192549.1 samtools variation 2056844 2056844 . . . alleles " C T"; frequencies " 0.640625 0.359375"; depth 64 ; known ; N/A GL192550.1 samtools variation 43766 43766 . . . alleles " G C"; frequencies " 0.697183098591549 0.302816901408451"; depth 142 ; unknown ; N/A GL192550.1 samtools variation 43772 43772 . . . alleles " T G"; frequencies " 0.359375 0.640625"; depth 128 ; unknown ; N/A GL192550.1 samtools variation 43835 43835 . . . alleles " T C"; frequencies " 0.342857142857143 0.657142857142857"; depth 175 ; unknown ; non-synonymous GL192550.1 samtools variation 44758 44758 . . . alleles " G A"; frequencies " 0.489795918367347 0.510204081632653"; depth 49 ; unknown ; synonymous GL192550.1 samtools variation 44842 44842 . . . alleles " C T"; frequencies " 0.74 0.26"; depth 50 ; unknown ; synonymous GL192550.1 samtools variation 44860 44860 . . . alleles " G A"; frequencies " 0.568965517241379 0.431034482758621"; depth 58 ; unknown ; synonymous GL192550.1 samtools variation 44866 44866 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 56 ; unknown ; synonymous GL192550.1 samtools variation 63747 63747 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 55 ; unknown ; synonymous GL192550.1 samtools variation 77771 77771 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 52 ; unknown ; non-synonymous GL192550.1 samtools variation 96593 96593 . . . alleles " G C"; frequencies " 0.211764705882353 0.788235294117647"; depth 85 ; known ; N/A GL192550.1 samtools variation 98573 98573 . . . alleles " G T"; frequencies " 0.772247360482655 0.227752639517345"; depth 663 ; unknown ; N/A GL192550.1 samtools variation 101563 101563 . . . alleles " C G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192550.1 samtools variation 105868 105868 . . . alleles " G A"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL192550.1 samtools variation 105907 105907 . . . alleles " A G"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL192550.1 samtools variation 107534 107534 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192550.1 samtools variation 107772 107772 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192550.1 samtools variation 107803 107803 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192550.1 samtools variation 107961 107961 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192550.1 samtools variation 108119 108119 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192550.1 samtools variation 108212 108212 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192550.1 samtools variation 110490 110490 . . . alleles " A G"; frequencies " 0.607142857142857 0.392857142857143"; depth 84 ; known ; non-synonymous GL192550.1 samtools variation 110545 110545 . . . alleles " C T"; frequencies " 0.306735751295337 0.693264248704663"; depth 965 ; known ; non-synonymous GL192550.1 samtools variation 111421 111421 . . . alleles " A T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL192550.1 samtools variation 111488 111488 . . . alleles " A G"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; known ; N/A GL192550.1 samtools variation 111528 111528 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL192550.1 samtools variation 111583 111583 . . . alleles " A T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL192550.1 samtools variation 111921 111921 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL192550.1 samtools variation 112647 112647 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL192550.1 samtools variation 115932 115932 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; N/A GL192550.1 samtools variation 116648 116648 . . . alleles " G T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192550.1 samtools variation 117328 117328 . . . alleles " G A"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; known ; N/A GL192550.1 samtools variation 117451 117451 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192550.1 samtools variation 117983 117983 . . . alleles " A T"; frequencies " 0.230769230769231 0.769230769230769"; depth 39 ; known ; N/A GL192550.1 samtools variation 118248 118248 . . . alleles " T G"; frequencies " 0.274193548387097 0.725806451612903"; depth 62 ; known ; N/A GL192550.1 samtools variation 118408 118408 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192550.1 samtools variation 118781 118781 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL192550.1 samtools variation 119823 119823 . . . alleles " C T"; frequencies " 0.708171206225681 0.291828793774319"; depth 514 ; unknown ; synonymous GL192550.1 samtools variation 119983 119983 . . . alleles " G A"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL192550.1 samtools variation 122732 122732 . . . alleles " T C"; frequencies " 0.728395061728395 0.271604938271605"; depth 81 ; unknown ; N/A GL192550.1 samtools variation 123540 123540 . . . alleles " G A"; frequencies " 0.23943661971831 0.76056338028169"; depth 71 ; known ; N/A GL192550.1 samtools variation 123862 123862 . . . alleles " T A"; frequencies " 0.207317073170732 0.792682926829268"; depth 82 ; known ; N/A GL192550.1 samtools variation 125469 125469 . . . alleles " C G"; frequencies " 0.734939759036145 0.265060240963855"; depth 83 ; known ; N/A GL192550.1 samtools variation 125497 125497 . . . alleles " G A"; frequencies " 0.788235294117647 0.211764705882353"; depth 85 ; unknown ; N/A GL192550.1 samtools variation 125519 125519 . . . alleles " G A"; frequencies " 0.204545454545455 0.795454545454545"; depth 88 ; known ; N/A GL192550.1 samtools variation 125801 125801 . . . alleles " G A"; frequencies " 0.652631578947368 0.347368421052632"; depth 95 ; known ; N/A GL192550.1 samtools variation 126131 126131 . . . alleles " G A"; frequencies " 0.283950617283951 0.716049382716049"; depth 81 ; unknown ; N/A GL192550.1 samtools variation 126141 126141 . . . alleles " T C"; frequencies " 0.7875 0.2125"; depth 80 ; known ; N/A GL192550.1 samtools variation 126762 126762 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 72 ; known ; N/A GL192550.1 samtools variation 126946 126946 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 60 ; known ; N/A GL192550.1 samtools variation 128132 128132 . . . alleles " C T"; frequencies " 0.771186440677966 0.228813559322034"; depth 118 ; unknown ; N/A GL192550.1 samtools variation 128665 128665 . . . alleles " T G"; frequencies " 0.315315315315315 0.684684684684685"; depth 111 ; unknown ; N/A GL192550.1 samtools variation 128740 128740 . . . alleles " A G"; frequencies " 0.552763819095477 0.447236180904523"; depth 199 ; unknown ; N/A GL192550.1 samtools variation 129674 129674 . . . alleles " A C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; known ; N/A GL192550.1 samtools variation 130533 130533 . . . alleles " G A"; frequencies " 0.349862258953168 0.650137741046832"; depth 726 ; unknown ; N/A GL192550.1 samtools variation 131965 131965 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 846 ; unknown ; N/A GL192550.1 samtools variation 132190 132190 . . . alleles " C T"; frequencies " 0.27906976744186 0.720930232558139"; depth 86 ; known ; N/A GL192550.1 samtools variation 132320 132320 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; known ; N/A GL192550.1 samtools variation 134263 134263 . . . alleles " G A"; frequencies " 0.657534246575342 0.342465753424658"; depth 73 ; known ; N/A GL192550.1 samtools variation 291751 291751 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192550.1 samtools variation 292092 292092 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 72 ; unknown ; N/A GL192550.1 samtools variation 292706 292706 . . . alleles " T C"; frequencies " 0.781512605042017 0.218487394957983"; depth 119 ; unknown ; N/A GL192550.1 samtools variation 295373 295373 . . . alleles " C G"; frequencies " 0.78125 0.21875"; depth 64 ; unknown ; N/A GL192550.1 samtools variation 307139 307139 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192550.1 samtools variation 344959 344959 . . . alleles " C T"; frequencies " 0.418604651162791 0.581395348837209"; depth 43 ; known ; N/A GL192550.1 samtools variation 365908 365908 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192550.1 samtools variation 386749 386749 . . . alleles " A T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192550.1 samtools variation 389526 389526 . . . alleles " C T"; frequencies " 0.60377358490566 0.39622641509434"; depth 53 ; unknown ; N/A GL192550.1 samtools variation 394397 394397 . . . alleles " G A"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; N/A GL192550.1 samtools variation 395882 395882 . . . alleles " C G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192550.1 samtools variation 411223 411223 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192550.1 samtools variation 411515 411515 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192550.1 samtools variation 411799 411799 . . . alleles " C T"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL192550.1 samtools variation 411856 411856 . . . alleles " A G"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL192550.1 samtools variation 412152 412152 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 78 ; unknown ; N/A GL192550.1 samtools variation 412492 412492 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192550.1 samtools variation 416312 416312 . . . alleles " T C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192550.1 samtools variation 964694 964694 . . . alleles " G C"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; N/A GL192550.1 samtools variation 964863 964863 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 225 ; unknown ; N/A GL192551.1 samtools variation 885252 885252 . . . alleles " A G"; frequencies " 0.452380952380952 0.547619047619048"; depth 126 ; unknown ; synonymous GL192551.1 samtools variation 952698 952698 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192551.1 samtools variation 1059560 1059560 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; synonymous GL192551.1 samtools variation 1059561 1059561 . . . alleles " C G"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; non-synonymous GL192551.1 samtools variation 1060349 1060349 . . . alleles " G A"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; unknown ; synonymous GL192551.1 samtools variation 1098017 1098017 . . . alleles " G T"; frequencies " 0.785276073619632 0.214723926380368"; depth 326 ; unknown ; N/A GL192551.1 samtools variation 1098993 1098993 . . . alleles " C T"; frequencies " 0.582120582120582 0.417879417879418"; depth 481 ; unknown ; synonymous GL192551.1 samtools variation 1099238 1099238 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192551.1 samtools variation 1106874 1106874 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 52 ; unknown ; N/A GL192551.1 samtools variation 1107288 1107288 . . . alleles " C T"; frequencies " 0.20952380952381 0.79047619047619"; depth 105 ; unknown ; N/A GL192551.1 samtools variation 1107289 1107289 . . . alleles " T C"; frequencies " 0.216981132075472 0.783018867924528"; depth 106 ; unknown ; N/A GL192551.1 samtools variation 1110869 1110869 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192551.1 samtools variation 1111080 1111080 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192551.1 samtools variation 1119180 1119180 . . . alleles " A G"; frequencies " 0.314606741573034 0.685393258426966"; depth 89 ; unknown ; N/A GL192551.1 samtools variation 1121039 1121039 . . . alleles " G T"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192551.1 samtools variation 1142455 1142455 . . . alleles " C T"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; unknown ; N/A GL192551.1 samtools variation 1144978 1144978 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 50 ; unknown ; N/A GL192551.1 samtools variation 1147981 1147981 . . . alleles " C A"; frequencies " 0.564516129032258 0.435483870967742"; depth 62 ; unknown ; N/A GL192551.1 samtools variation 1148464 1148464 . . . alleles " T C"; frequencies " 0.257575757575758 0.742424242424242"; depth 66 ; unknown ; N/A GL192551.1 samtools variation 1151240 1151240 . . . alleles " G C"; frequencies " 0.206349206349206 0.793650793650794"; depth 189 ; unknown ; N/A GL192551.1 samtools variation 1152523 1152523 . . . alleles " G C"; frequencies " 0.523972602739726 0.476027397260274"; depth 292 ; unknown ; N/A GL192551.1 samtools variation 1153793 1153793 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 51 ; unknown ; N/A GL192551.1 samtools variation 1162045 1162045 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192551.1 samtools variation 1162516 1162516 . . . alleles " A G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192551.1 samtools variation 1162682 1162682 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192551.1 samtools variation 1165118 1165118 . . . alleles " C T"; frequencies " 0.735849056603774 0.264150943396226"; depth 53 ; unknown ; N/A GL192551.1 samtools variation 1166723 1166723 . . . alleles " T C"; frequencies " 0.46031746031746 0.53968253968254"; depth 63 ; unknown ; N/A GL192551.1 samtools variation 1167287 1167287 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192551.1 samtools variation 1167501 1167501 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 42 ; unknown ; N/A GL192551.1 samtools variation 1167769 1167769 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192551.1 samtools variation 1185865 1185865 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192552.1 samtools variation 354866 354866 . . . alleles " T C"; frequencies " 0.619354838709677 0.380645161290323"; depth 155 ; known ; N/A GL192552.1 samtools variation 356107 356107 . . . alleles " C T"; frequencies " 0.611825192802057 0.388174807197943"; depth 1167 ; known ; N/A GL192552.1 samtools variation 362954 362954 . . . alleles " C A"; frequencies " 0.448598130841121 0.551401869158878"; depth 214 ; known ; N/A GL192552.1 samtools variation 364374 364374 . . . alleles " C A"; frequencies " 0.704477611940298 0.295522388059701"; depth 335 ; unknown ; N/A GL192552.1 samtools variation 367500 367500 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192552.1 samtools variation 368059 368059 . . . alleles " T C"; frequencies " 0.259615384615385 0.740384615384615"; depth 416 ; known ; synonymous GL192552.1 samtools variation 370447 370447 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192552.1 samtools variation 373770 373770 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192552.1 samtools variation 377041 377041 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192552.1 samtools variation 378423 378423 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192552.1 samtools variation 378921 378921 . . . alleles " A T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192552.1 samtools variation 381695 381695 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 32 ; known ; N/A GL192552.1 samtools variation 381963 381963 . . . alleles " G A"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL192552.1 samtools variation 381995 381995 . . . alleles " T C"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; known ; N/A GL192552.1 samtools variation 388070 388070 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192552.1 samtools variation 390709 390709 . . . alleles " A C"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; N/A GL192552.1 samtools variation 668072 668072 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192552.1 samtools variation 671023 671023 . . . alleles " A G"; frequencies " 0.28021978021978 0.71978021978022"; depth 364 ; known ; N/A GL192552.1 samtools variation 671325 671325 . . . alleles " C T"; frequencies " 0.629213483146067 0.370786516853933"; depth 89 ; unknown ; N/A GL192552.1 samtools variation 671833 671833 . . . alleles " G T"; frequencies " 0.796680497925311 0.203319502074689"; depth 241 ; unknown ; N/A GL192552.1 samtools variation 671836 671836 . . . alleles " C T"; frequencies " 0.782978723404255 0.217021276595745"; depth 235 ; unknown ; N/A GL192552.1 samtools variation 681788 681788 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; unknown ; synonymous GL192552.1 samtools variation 700093 700093 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 144 ; known ; synonymous GL192552.1 samtools variation 1055947 1055947 . . . alleles " T A"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL192552.1 samtools variation 1057118 1057118 . . . alleles " T A"; frequencies " 0.571428571428571 0.428571428571429"; depth 98 ; known ; N/A GL192552.1 samtools variation 1185388 1185388 . . . alleles " T C"; frequencies " 0.327751196172249 0.672248803827751"; depth 418 ; known ; synonymous GL192552.1 samtools variation 1279076 1279076 . . . alleles " A G"; frequencies " 0.423076923076923 0.576923076923077"; depth 52 ; known ; N/A GL192552.1 samtools variation 1296116 1296116 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192552.1 samtools variation 1311276 1311276 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192552.1 samtools variation 1325174 1325174 . . . alleles " T C"; frequencies " 0.395348837209302 0.604651162790698"; depth 43 ; known ; N/A GL192552.1 samtools variation 1325276 1325276 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; N/A GL192552.1 samtools variation 1328755 1328755 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192552.1 samtools variation 1328957 1328957 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192552.1 samtools variation 1339176 1339176 . . . alleles " T C"; frequencies " 0.577011494252874 0.422988505747126"; depth 870 ; known ; N/A GL192552.1 samtools variation 1339562 1339562 . . . alleles " A G"; frequencies " 0.606267029972752 0.393732970027248"; depth 734 ; known ; N/A GL192552.1 samtools variation 1340114 1340114 . . . alleles " C G"; frequencies " 0.548514851485149 0.451485148514851"; depth 505 ; known ; N/A GL192552.1 samtools variation 1342794 1342794 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192552.1 samtools variation 1344167 1344167 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192552.1 samtools variation 1344656 1344656 . . . alleles " C G"; frequencies " 0.531914893617021 0.468085106382979"; depth 47 ; known ; N/A GL192552.1 samtools variation 1360096 1360096 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192552.1 samtools variation 1377616 1377616 . . . alleles " G A"; frequencies " 0.618138424821002 0.381861575178998"; depth 419 ; known ; synonymous GL192552.1 samtools variation 1381367 1381367 . . . alleles " A G"; frequencies " 0.324324324324324 0.675675675675676"; depth 37 ; known ; N/A GL192552.1 samtools variation 1383814 1383814 . . . alleles " A G"; frequencies " 0.391891891891892 0.608108108108108"; depth 148 ; known ; synonymous GL192552.1 samtools variation 1536926 1536926 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192552.1 samtools variation 1539446 1539446 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192552.1 samtools variation 1566877 1566877 . . . alleles " A G"; frequencies " 0.566929133858268 0.433070866141732"; depth 254 ; known ; N/A GL192552.1 samtools variation 1789608 1789608 . . . alleles " C T"; frequencies " 0.676056338028169 0.323943661971831"; depth 71 ; known ; N/A GL192552.1 samtools variation 1792134 1792134 . . . alleles " T G"; frequencies " 0.363636363636364 0.636363636363636"; depth 44 ; known ; N/A GL192552.1 samtools variation 1799708 1799708 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192552.1 samtools variation 1889785 1889785 . . . alleles " G A"; frequencies " 0.361702127659574 0.638297872340426"; depth 94 ; known ; N/A GL192553.1 samtools variation 1220376 1220376 . . . alleles " T C"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; known ; synonymous GL192553.1 samtools variation 1220388 1220388 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; known ; synonymous GL192553.1 samtools variation 1960010 1960010 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL192553.1 samtools variation 1960906 1960906 . . . alleles " G A"; frequencies " 0.344262295081967 0.655737704918033"; depth 61 ; known ; N/A GL192553.1 samtools variation 1961856 1961856 . . . alleles " T C"; frequencies " 0.728571428571429 0.271428571428571"; depth 70 ; known ; N/A GL192553.1 samtools variation 1962263 1962263 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; known ; N/A GL192553.1 samtools variation 1987734 1987734 . . . alleles " C T"; frequencies " 0.724770642201835 0.275229357798165"; depth 109 ; unknown ; non-synonymous GL192553.1 samtools variation 2004488 2004488 . . . alleles " T C"; frequencies " 0.640718562874252 0.359281437125749"; depth 167 ; known ; non-synonymous GL192553.1 samtools variation 2014250 2014250 . . . alleles " T C"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; synonymous GL192553.1 samtools variation 2059873 2059873 . . . alleles " C T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192553.1 samtools variation 2059883 2059883 . . . alleles " T G"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; known ; N/A GL192554.1 samtools variation 28102 28102 . . . alleles " G A"; frequencies " 0.605442176870748 0.394557823129252"; depth 147 ; unknown ; non-synonymous GL192554.1 samtools variation 29776 29776 . . . alleles " A T"; frequencies " 0.674509803921569 0.325490196078431"; depth 255 ; unknown ; non-synonymous GL192554.1 samtools variation 31755 31755 . . . alleles " T C"; frequencies " 0.673400673400673 0.323232323232323"; depth 297 ; unknown ; N/A GL192554.1 samtools variation 106360 106360 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192554.1 samtools variation 136804 136804 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192554.1 samtools variation 137048 137048 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192554.1 samtools variation 142328 142328 . . . alleles " C G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192554.1 samtools variation 143668 143668 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192554.1 samtools variation 146183 146183 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL192554.1 samtools variation 148007 148007 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL192554.1 samtools variation 148786 148786 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL192554.1 samtools variation 150926 150926 . . . alleles " A G"; frequencies " 0.219858156028369 0.780141843971631"; depth 141 ; known ; N/A GL192554.1 samtools variation 151049 151049 . . . alleles " C T"; frequencies " 0.77710843373494 0.22289156626506"; depth 166 ; known ; N/A GL192554.1 samtools variation 155038 155038 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192554.1 samtools variation 157944 157944 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192554.1 samtools variation 158528 158528 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192554.1 samtools variation 170478 170478 . . . alleles " C A"; frequencies " 0.716216216216216 0.283783783783784"; depth 74 ; known ; N/A GL192554.1 samtools variation 179236 179236 . . . alleles " A C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192554.1 samtools variation 179241 179241 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192554.1 samtools variation 185083 185083 . . . alleles " C T"; frequencies " 0.314285714285714 0.685714285714286"; depth 35 ; known ; N/A GL192554.1 samtools variation 185227 185227 . . . alleles " G A"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; known ; N/A GL192554.1 samtools variation 185461 185461 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192554.1 samtools variation 188384 188384 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 156 ; known ; N/A GL192554.1 samtools variation 188405 188405 . . . alleles " C A"; frequencies " 0.695906432748538 0.304093567251462"; depth 171 ; known ; N/A GL192554.1 samtools variation 207295 207295 . . . alleles " A T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL192554.1 samtools variation 226998 226998 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192554.1 samtools variation 368882 368882 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192554.1 samtools variation 421881 421881 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192554.1 samtools variation 445461 445461 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192554.1 samtools variation 446312 446312 . . . alleles " C T"; frequencies " 0.21875 0.78125"; depth 64 ; known ; N/A GL192554.1 samtools variation 489330 489330 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192554.1 samtools variation 491707 491707 . . . alleles " G T"; frequencies " 0.323529411764706 0.676470588235294"; depth 34 ; unknown ; N/A GL192554.1 samtools variation 499617 499617 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192554.1 samtools variation 505768 505768 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192554.1 samtools variation 531070 531070 . . . alleles " T C"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL192554.1 samtools variation 531103 531103 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 35 ; known ; N/A GL192554.1 samtools variation 531170 531170 . . . alleles " T C"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; known ; N/A GL192554.1 samtools variation 543357 543357 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192554.1 samtools variation 576403 576403 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192554.1 samtools variation 814034 814034 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192554.1 samtools variation 814091 814091 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192554.1 samtools variation 1503891 1503891 . . . alleles " C T"; frequencies " 0.79646017699115 0.20353982300885"; depth 113 ; unknown ; N/A GL192554.1 samtools variation 1504816 1504816 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192554.1 samtools variation 1511276 1511276 . . . alleles " T A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192554.1 samtools variation 1511277 1511277 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192554.1 samtools variation 1518330 1518330 . . . alleles " T G"; frequencies " 0.2 0.8"; depth 25 ; unknown ; N/A GL192554.1 samtools variation 1519415 1519415 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192554.1 samtools variation 1728860 1728860 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192554.1 samtools variation 1886691 1886691 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL192554.1 samtools variation 1907773 1907773 . . . alleles " A G"; frequencies " 0.342592592592593 0.648148148148148"; depth 108 ; unknown ; non-synonymous GL192554.1 samtools variation 1907780 1907780 . . . alleles " C T"; frequencies " 0.342342342342342 0.657657657657658"; depth 111 ; unknown ; synonymous GL192554.1 samtools variation 1952780 1952780 . . . alleles " C T"; frequencies " 0.553846153846154 0.446153846153846"; depth 260 ; unknown ; N/A GL192554.1 samtools variation 2027664 2027664 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192556.1 samtools variation 406915 406915 . . . alleles " C T"; frequencies " 0.761111111111111 0.238888888888889"; depth 180 ; unknown ; N/A GL192556.1 samtools variation 833361 833361 . . . alleles " C T"; frequencies " 0.675 0.325"; depth 40 ; known ; non-synonymous GL192556.1 samtools variation 851199 851199 . . . alleles " G C"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; known ; non-synonymous GL192556.1 samtools variation 862732 862732 . . . alleles " A G"; frequencies " 0.634408602150538 0.365591397849462"; depth 93 ; known ; N/A GL192556.1 samtools variation 864128 864128 . . . alleles " T C"; frequencies " 0.612903225806452 0.387096774193548"; depth 93 ; known ; N/A GL192556.1 samtools variation 865098 865098 . . . alleles " C T"; frequencies " 0.798076923076923 0.201923076923077"; depth 104 ; known ; N/A GL192556.1 samtools variation 868219 868219 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192556.1 samtools variation 1009024 1009024 . . . alleles " A T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192556.1 samtools variation 1252556 1252556 . . . alleles " A G"; frequencies " 0.441441441441441 0.558558558558559"; depth 111 ; known ; N/A GL192556.1 samtools variation 1253250 1253250 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 80 ; known ; N/A GL192556.1 samtools variation 1253502 1253502 . . . alleles " G A"; frequencies " 0.606451612903226 0.393548387096774"; depth 155 ; unknown ; N/A GL192556.1 samtools variation 1253620 1253620 . . . alleles " C T"; frequencies " 0.429906542056075 0.570093457943925"; depth 214 ; known ; N/A GL192556.1 samtools variation 1253778 1253778 . . . alleles " G A"; frequencies " 0.462365591397849 0.537634408602151"; depth 93 ; known ; N/A GL192556.1 samtools variation 1253885 1253885 . . . alleles " T C"; frequencies " 0.448979591836735 0.551020408163265"; depth 98 ; known ; N/A GL192556.1 samtools variation 1254030 1254030 . . . alleles " C T"; frequencies " 0.52027027027027 0.47972972972973"; depth 148 ; known ; N/A GL192556.1 samtools variation 1254307 1254307 . . . alleles " G A"; frequencies " 0.523489932885906 0.476510067114094"; depth 149 ; known ; N/A GL192556.1 samtools variation 1254562 1254562 . . . alleles " T G"; frequencies " 0.62987012987013 0.37012987012987"; depth 154 ; known ; N/A GL192556.1 samtools variation 1254614 1254614 . . . alleles " C T"; frequencies " 0.628571428571429 0.371428571428571"; depth 140 ; known ; N/A GL192556.1 samtools variation 1255062 1255062 . . . alleles " A C"; frequencies " 0.261682242990654 0.738317757009346"; depth 107 ; known ; N/A GL192556.1 samtools variation 1255238 1255238 . . . alleles " G C"; frequencies " 0.664948453608247 0.335051546391753"; depth 194 ; known ; N/A GL192556.1 samtools variation 1255427 1255427 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 147 ; known ; N/A GL192556.1 samtools variation 1255668 1255668 . . . alleles " A C"; frequencies " 0.327868852459016 0.672131147540984"; depth 61 ; known ; N/A GL192556.1 samtools variation 1255737 1255737 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 56 ; known ; N/A GL192556.1 samtools variation 1256285 1256285 . . . alleles " A G"; frequencies " 0.768707482993197 0.231292517006803"; depth 147 ; known ; N/A GL192556.1 samtools variation 1256306 1256306 . . . alleles " G A"; frequencies " 0.79020979020979 0.20979020979021"; depth 143 ; known ; N/A GL192556.1 samtools variation 1256444 1256444 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 99 ; known ; N/A GL192556.1 samtools variation 1256463 1256463 . . . alleles " A C"; frequencies " 0.304347826086957 0.695652173913043"; depth 92 ; known ; N/A GL192556.1 samtools variation 1256546 1256546 . . . alleles " C A"; frequencies " 0.662790697674419 0.337209302325581"; depth 86 ; known ; N/A GL192556.1 samtools variation 1256739 1256739 . . . alleles " C T"; frequencies " 0.341935483870968 0.658064516129032"; depth 155 ; known ; N/A GL192556.1 samtools variation 1256868 1256868 . . . alleles " A G"; frequencies " 0.648 0.352"; depth 125 ; known ; N/A GL192556.1 samtools variation 1256886 1256886 . . . alleles " A G"; frequencies " 0.68695652173913 0.31304347826087"; depth 115 ; known ; N/A GL192556.1 samtools variation 1257381 1257381 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 69 ; known ; N/A GL192556.1 samtools variation 1259691 1259691 . . . alleles " G A"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; known ; synonymous GL192556.1 samtools variation 1259786 1259786 . . . alleles " T C"; frequencies " 0.728571428571429 0.271428571428571"; depth 70 ; known ; N/A GL192556.1 samtools variation 1260435 1260435 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192556.1 samtools variation 1260633 1260633 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 80 ; known ; N/A GL192556.1 samtools variation 1260709 1260709 . . . alleles " G C"; frequencies " 0.34375 0.65625"; depth 64 ; known ; N/A GL192556.1 samtools variation 1262960 1262960 . . . alleles " G C"; frequencies " 0.230769230769231 0.769230769230769"; depth 39 ; known ; N/A GL192556.1 samtools variation 1263320 1263320 . . . alleles " A G"; frequencies " 0.361702127659574 0.638297872340426"; depth 47 ; known ; N/A GL192556.1 samtools variation 1265127 1265127 . . . alleles " G A"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL192556.1 samtools variation 1265304 1265304 . . . alleles " G T"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL192556.1 samtools variation 1265699 1265699 . . . alleles " A G"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; N/A GL192556.1 samtools variation 1266027 1266027 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192556.1 samtools variation 1266077 1266077 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; N/A GL192556.1 samtools variation 1600435 1600435 . . . alleles " G C"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192556.1 samtools variation 2013897 2013897 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 104 ; unknown ; synonymous GL192556.1 samtools variation 2032836 2032836 . . . alleles " A G"; frequencies " 0.427272727272727 0.572727272727273"; depth 110 ; known ; non-synonymous GL192557.1 samtools variation 274884 274884 . . . alleles " A G"; frequencies " 0.683823529411765 0.316176470588235"; depth 136 ; unknown ; N/A GL192557.1 samtools variation 274889 274889 . . . alleles " T C"; frequencies " 0.680272108843537 0.319727891156463"; depth 147 ; unknown ; N/A GL192557.1 samtools variation 358902 358902 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 42 ; unknown ; N/A GL192557.1 samtools variation 365451 365451 . . . alleles " T G"; frequencies " 0.280821917808219 0.719178082191781"; depth 146 ; unknown ; non-synonymous GL192557.1 samtools variation 458911 458911 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; synonymous GL192557.1 samtools variation 458916 458916 . . . alleles " T G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; synonymous GL192557.1 samtools variation 677901 677901 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; synonymous GL192557.1 samtools variation 678047 678047 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; non-synonymous GL192557.1 samtools variation 1214109 1214109 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL192557.1 samtools variation 1216714 1216714 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192557.1 samtools variation 1237334 1237334 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192557.1 samtools variation 1345728 1345728 . . . alleles " A T"; frequencies " 0.76 0.24"; depth 25 ; unknown ; synonymous GL192557.1 samtools variation 1396438 1396438 . . . alleles " C T"; frequencies " 0.232323232323232 0.767676767676768"; depth 99 ; known ; non-synonymous GL192557.1 samtools variation 1396461 1396461 . . . alleles " A C"; frequencies " 0.231578947368421 0.768421052631579"; depth 95 ; known ; synonymous GL192557.1 samtools variation 1398918 1398918 . . . alleles " T C"; frequencies " 0.766355140186916 0.233644859813084"; depth 107 ; known ; synonymous GL192558.1 samtools variation 245991 245991 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL192558.1 samtools variation 247089 247089 . . . alleles " A G"; frequencies " 0.725490196078431 0.274509803921569"; depth 51 ; unknown ; non-synonymous GL192558.1 samtools variation 376353 376353 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192558.1 samtools variation 384389 384389 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 50 ; unknown ; N/A GL192558.1 samtools variation 384451 384451 . . . alleles " A G"; frequencies " 0.361111111111111 0.638888888888889"; depth 36 ; unknown ; N/A GL192558.1 samtools variation 1034002 1034002 . . . alleles " T C"; frequencies " 0.221932114882507 0.778067885117493"; depth 383 ; unknown ; N/A GL192558.1 samtools variation 1034173 1034173 . . . alleles " G A"; frequencies " 0.217194570135747 0.782805429864253"; depth 221 ; unknown ; N/A GL192558.1 samtools variation 1076325 1076325 . . . alleles " C T"; frequencies " 0.702586206896552 0.297413793103448"; depth 232 ; unknown ; non-synonymous GL192558.1 samtools variation 1076368 1076368 . . . alleles " G T"; frequencies " 0.72 0.28"; depth 150 ; unknown ; synonymous GL192558.1 samtools variation 1087871 1087871 . . . alleles " A C"; frequencies " 0.796780684104628 0.203219315895372"; depth 497 ; unknown ; synonymous GL192558.1 samtools variation 1089624 1089624 . . . alleles " A C"; frequencies " 0.792929292929293 0.207070707070707"; depth 198 ; unknown ; N/A GL192560.1 samtools variation 117078 117078 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; synonymous GL192560.1 samtools variation 133333 133333 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192560.1 samtools variation 133455 133455 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192560.1 samtools variation 140878 140878 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192560.1 samtools variation 146178 146178 . . . alleles " T C"; frequencies " 0.316176470588235 0.683823529411765"; depth 136 ; known ; synonymous GL192560.1 samtools variation 146439 146439 . . . alleles " A T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192560.1 samtools variation 146734 146734 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192560.1 samtools variation 147004 147004 . . . alleles " C T"; frequencies " 0.759493670886076 0.240506329113924"; depth 79 ; known ; non-synonymous GL192560.1 samtools variation 147804 147804 . . . alleles " T C"; frequencies " 0.300970873786408 0.699029126213592"; depth 103 ; known ; synonymous GL192560.1 samtools variation 149588 149588 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192560.1 samtools variation 149688 149688 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL192560.1 samtools variation 173722 173722 . . . alleles " A C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL192560.1 samtools variation 183215 183215 . . . alleles " T C"; frequencies " 0.24 0.76"; depth 100 ; known ; synonymous GL192560.1 samtools variation 355249 355249 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL192560.1 samtools variation 385586 385586 . . . alleles " T C"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; synonymous GL192560.1 samtools variation 407668 407668 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192560.1 samtools variation 408212 408212 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL192560.1 samtools variation 408941 408941 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192560.1 samtools variation 409329 409329 . . . alleles " A C"; frequencies " 0.673913043478261 0.326086956521739"; depth 46 ; unknown ; N/A GL192560.1 samtools variation 410350 410350 . . . alleles " A G"; frequencies " 0.716216216216216 0.283783783783784"; depth 74 ; unknown ; N/A GL192560.1 samtools variation 411512 411512 . . . alleles " C A"; frequencies " 0.66 0.34"; depth 50 ; unknown ; N/A GL192560.1 samtools variation 411621 411621 . . . alleles " T C"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL192560.1 samtools variation 411639 411639 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; unknown ; N/A GL192560.1 samtools variation 412833 412833 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192560.1 samtools variation 412873 412873 . . . alleles " C G"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192560.1 samtools variation 413045 413045 . . . alleles " G A"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; unknown ; N/A GL192560.1 samtools variation 413803 413803 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192560.1 samtools variation 414507 414507 . . . alleles " C G"; frequencies " 0.720930232558139 0.27906976744186"; depth 129 ; unknown ; N/A GL192560.1 samtools variation 414737 414737 . . . alleles " C T"; frequencies " 0.677966101694915 0.322033898305085"; depth 59 ; unknown ; N/A GL192560.1 samtools variation 414991 414991 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192560.1 samtools variation 415045 415045 . . . alleles " A G"; frequencies " 0.675324675324675 0.324675324675325"; depth 77 ; unknown ; N/A GL192560.1 samtools variation 415729 415729 . . . alleles " G A"; frequencies " 0.689393939393939 0.310606060606061"; depth 132 ; unknown ; N/A GL192560.1 samtools variation 415818 415818 . . . alleles " G A"; frequencies " 0.656410256410256 0.343589743589744"; depth 195 ; unknown ; N/A GL192560.1 samtools variation 415927 415927 . . . alleles " G A"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; unknown ; N/A GL192560.1 samtools variation 415977 415977 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192560.1 samtools variation 417005 417005 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192560.1 samtools variation 473827 473827 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192560.1 samtools variation 473886 473886 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192560.1 samtools variation 679724 679724 . . . alleles " G A"; frequencies " 0.551456310679612 0.448543689320388"; depth 515 ; unknown ; N/A GL192560.1 samtools variation 680606 680606 . . . alleles " G C"; frequencies " 0.204751131221719 0.79524886877828"; depth 884 ; known ; N/A GL192560.1 samtools variation 681818 681818 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL192560.1 samtools variation 773487 773487 . . . alleles " G A"; frequencies " 0.639830508474576 0.360169491525424"; depth 236 ; unknown ; synonymous GL192560.1 samtools variation 783124 783124 . . . alleles " C G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192560.1 samtools variation 802874 802874 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 155 ; known ; synonymous GL192560.1 samtools variation 813718 813718 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192560.1 samtools variation 821765 821765 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192560.1 samtools variation 830818 830818 . . . alleles " A G"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192560.1 samtools variation 831466 831466 . . . alleles " A G"; frequencies " 0.36 0.64"; depth 50 ; unknown ; N/A GL192560.1 samtools variation 840480 840480 . . . alleles " C T"; frequencies " 0.690243902439024 0.309756097560976"; depth 410 ; unknown ; synonymous GL192560.1 samtools variation 840488 840488 . . . alleles " C T"; frequencies " 0.4874715261959 0.5125284738041"; depth 439 ; unknown ; synonymous GL192560.1 samtools variation 841284 841284 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192560.1 samtools variation 841308 841308 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192560.1 samtools variation 842010 842010 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192560.1 samtools variation 844647 844647 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192560.1 samtools variation 844684 844684 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192560.1 samtools variation 845079 845079 . . . alleles " A T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL192560.1 samtools variation 846401 846401 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192560.1 samtools variation 847666 847666 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; unknown ; N/A GL192560.1 samtools variation 850214 850214 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192560.1 samtools variation 851413 851413 . . . alleles " C A"; frequencies " 0.703703703703704 0.296296296296296"; depth 54 ; unknown ; N/A GL192560.1 samtools variation 851547 851547 . . . alleles " C T"; frequencies " 0.693548387096774 0.306451612903226"; depth 62 ; unknown ; N/A GL192560.1 samtools variation 851557 851557 . . . alleles " G A"; frequencies " 0.683333333333333 0.316666666666667"; depth 60 ; unknown ; N/A GL192560.1 samtools variation 851732 851732 . . . alleles " G A"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; known ; N/A GL192560.1 samtools variation 859908 859908 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192560.1 samtools variation 862035 862035 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192560.1 samtools variation 862037 862037 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192560.1 samtools variation 862343 862343 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192560.1 samtools variation 869845 869845 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 24 ; known ; N/A GL192560.1 samtools variation 872751 872751 . . . alleles " T A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192560.1 samtools variation 895089 895089 . . . alleles " T C"; frequencies " 0.203703703703704 0.796296296296296"; depth 54 ; known ; N/A GL192560.1 samtools variation 895137 895137 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 24 ; known ; N/A GL192560.1 samtools variation 895791 895791 . . . alleles " T C"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; known ; N/A GL192560.1 samtools variation 895859 895859 . . . alleles " G A"; frequencies " 0.306122448979592 0.693877551020408"; depth 49 ; known ; N/A GL192560.1 samtools variation 896147 896147 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192560.1 samtools variation 897040 897040 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; synonymous GL192560.1 samtools variation 897343 897343 . . . alleles " C T"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; non-synonymous GL192560.1 samtools variation 1020322 1020322 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192561.1 samtools variation 83844 83844 . . . alleles " A G"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; synonymous GL192561.1 samtools variation 110424 110424 . . . alleles " T G"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; non-synonymous GL192562.1 samtools variation 91682 91682 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192562.1 samtools variation 91687 91687 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192562.1 samtools variation 96163 96163 . . . alleles " C T"; frequencies " 0.321428571428571 0.678571428571429"; depth 56 ; known ; N/A GL192562.1 samtools variation 97062 97062 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 26 ; known ; N/A GL192562.1 samtools variation 115576 115576 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192562.1 samtools variation 115858 115858 . . . alleles " C T"; frequencies " 0.795180722891566 0.204819277108434"; depth 83 ; unknown ; N/A GL192562.1 samtools variation 116848 116848 . . . alleles " G A"; frequencies " 0.56 0.44"; depth 25 ; known ; N/A GL192562.1 samtools variation 116953 116953 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 25 ; known ; N/A GL192562.1 samtools variation 152533 152533 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; unknown ; N/A GL192562.1 samtools variation 153333 153333 . . . alleles " C T"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; N/A GL192562.1 samtools variation 159335 159335 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192562.1 samtools variation 261944 261944 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192563.1 samtools variation 191616 191616 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192563.1 samtools variation 191767 191767 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192563.1 samtools variation 397831 397831 . . . alleles " G A"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192563.1 samtools variation 398529 398529 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; synonymous GL192563.1 samtools variation 785774 785774 . . . alleles " T C"; frequencies " 0.293814432989691 0.706185567010309"; depth 194 ; unknown ; N/A GL192563.1 samtools variation 813475 813475 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 38 ; unknown ; synonymous GL192563.1 samtools variation 819414 819414 . . . alleles " C T"; frequencies " 0.316770186335404 0.683229813664596"; depth 161 ; unknown ; N/A GL192563.1 samtools variation 871492 871492 . . . alleles " A C"; frequencies " 0.693548387096774 0.306451612903226"; depth 62 ; unknown ; N/A GL192563.1 samtools variation 884808 884808 . . . alleles " G A"; frequencies " 0.481481481481481 0.518518518518518"; depth 54 ; unknown ; N/A GL192563.1 samtools variation 914717 914717 . . . alleles " G A"; frequencies " 0.279475982532751 0.720524017467249"; depth 229 ; unknown ; N/A GL192563.1 samtools variation 918746 918746 . . . alleles " T C"; frequencies " 0.317241379310345 0.682758620689655"; depth 145 ; unknown ; synonymous GL192563.1 samtools variation 927533 927533 . . . alleles " T C"; frequencies " 0.282051282051282 0.717948717948718"; depth 39 ; unknown ; synonymous GL192563.1 samtools variation 928329 928329 . . . alleles " T C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192563.1 samtools variation 930365 930365 . . . alleles " A G"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; unknown ; N/A GL192563.1 samtools variation 930751 930751 . . . alleles " A G"; frequencies " 0.707602339181287 0.292397660818713"; depth 171 ; unknown ; synonymous GL192563.1 samtools variation 961249 961249 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 42 ; unknown ; N/A GL192563.1 samtools variation 989440 989440 . . . alleles " G T"; frequencies " 0.556962025316456 0.443037974683544"; depth 79 ; unknown ; non-synonymous GL192563.1 samtools variation 1076253 1076253 . . . alleles " T G"; frequencies " 0.469982847341338 0.528301886792453"; depth 583 ; unknown ; N/A GL192563.1 samtools variation 1086436 1086436 . . . alleles " C A"; frequencies " 0.55076495132128 0.44923504867872"; depth 719 ; unknown ; non-synonymous GL192563.1 samtools variation 1158683 1158683 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL192563.1 samtools variation 1162069 1162069 . . . alleles " C G"; frequencies " 0.442367601246106 0.557632398753894"; depth 321 ; unknown ; N/A GL192563.1 samtools variation 1371291 1371291 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192563.1 samtools variation 1659156 1659156 . . . alleles " A G"; frequencies " 0.616438356164384 0.383561643835616"; depth 73 ; unknown ; synonymous GL192563.1 samtools variation 1720030 1720030 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192563.1 samtools variation 1720050 1720050 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192563.1 samtools variation 1721545 1721545 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192563.1 samtools variation 1724726 1724726 . . . alleles " G A"; frequencies " 0.704081632653061 0.295918367346939"; depth 98 ; unknown ; synonymous GL192563.1 samtools variation 2063856 2063856 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192565.1 samtools variation 507431 507431 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; non-synonymous GL192565.1 samtools variation 513136 513136 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; non-synonymous GL192565.1 samtools variation 513883 513883 . . . alleles " T C"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; known ; non-synonymous GL192565.1 samtools variation 749211 749211 . . . alleles " T C"; frequencies " 0.463636363636364 0.536363636363636"; depth 110 ; known ; non-synonymous GL192565.1 samtools variation 761527 761527 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL192565.1 samtools variation 761586 761586 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192565.1 samtools variation 761795 761795 . . . alleles " G A"; frequencies " 0.638297872340426 0.361702127659574"; depth 47 ; known ; synonymous GL192565.1 samtools variation 845697 845697 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; N/A GL192565.1 samtools variation 846749 846749 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; synonymous GL192566.1 samtools variation 516312 516312 . . . alleles " C A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192566.1 samtools variation 1202071 1202071 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192566.1 samtools variation 1202074 1202074 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192566.1 samtools variation 1202142 1202142 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192566.1 samtools variation 1202545 1202545 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192567.1 samtools variation 199181 199181 . . . alleles " T G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192567.1 samtools variation 256436 256436 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 56 ; unknown ; synonymous GL192567.1 samtools variation 285889 285889 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL192567.1 samtools variation 311834 311834 . . . alleles " G A"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192567.1 samtools variation 312166 312166 . . . alleles " T G"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192567.1 samtools variation 496873 496873 . . . alleles " C T"; frequencies " 0.711111111111111 0.288888888888889"; depth 90 ; unknown ; N/A GL192567.1 samtools variation 517797 517797 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192567.1 samtools variation 520935 520935 . . . alleles " A T"; frequencies " 0.618677042801556 0.381322957198444"; depth 257 ; unknown ; N/A GL192567.1 samtools variation 568529 568529 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192567.1 samtools variation 573580 573580 . . . alleles " A G"; frequencies " 0.551724137931034 0.448275862068966"; depth 116 ; unknown ; N/A GL192567.1 samtools variation 613219 613219 . . . alleles " T C"; frequencies " 0.646153846153846 0.353846153846154"; depth 65 ; known ; N/A GL192567.1 samtools variation 614029 614029 . . . alleles " C T"; frequencies " 0.624203821656051 0.375796178343949"; depth 314 ; unknown ; synonymous GL192567.1 samtools variation 615756 615756 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; N/A GL192567.1 samtools variation 749171 749171 . . . alleles " G A"; frequencies " 0.678571428571429 0.321428571428571"; depth 224 ; known ; synonymous GL192567.1 samtools variation 772593 772593 . . . alleles " G A"; frequencies " 0.595057034220532 0.404942965779468"; depth 526 ; unknown ; non-synonymous GL192567.1 samtools variation 774530 774530 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL192567.1 samtools variation 807558 807558 . . . alleles " G C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192567.1 samtools variation 992808 992808 . . . alleles " C T"; frequencies " 0.680851063829787 0.319148936170213"; depth 47 ; unknown ; N/A GL192567.1 samtools variation 997537 997537 . . . alleles " G T"; frequencies " 0.68462291870715 0.31537708129285"; depth 1021 ; unknown ; synonymous GL192567.1 samtools variation 1256828 1256828 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192567.1 samtools variation 1320499 1320499 . . . alleles " A T"; frequencies " 0.715909090909091 0.284090909090909"; depth 176 ; unknown ; non-synonymous GL192567.1 samtools variation 1372889 1372889 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192567.1 samtools variation 1489820 1489820 . . . alleles " T G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192567.1 samtools variation 1500333 1500333 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192567.1 samtools variation 1765067 1765067 . . . alleles " G A"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; known ; N/A GL192567.1 samtools variation 1775435 1775435 . . . alleles " A G"; frequencies " 0.780487804878049 0.219512195121951"; depth 205 ; unknown ; non-synonymous GL192567.1 samtools variation 1839570 1839570 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 40 ; known ; non-synonymous GL192568.1 samtools variation 344251 344251 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; synonymous GL192568.1 samtools variation 353694 353694 . . . alleles " A G"; frequencies " 0.609756097560976 0.390243902439024"; depth 41 ; unknown ; synonymous GL192568.1 samtools variation 379697 379697 . . . alleles " T A"; frequencies " 0.732142857142857 0.267857142857143"; depth 56 ; unknown ; synonymous GL192568.1 samtools variation 839990 839990 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192568.1 samtools variation 1282454 1282454 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192568.1 samtools variation 1299699 1299699 . . . alleles " G A"; frequencies " 0.708520179372197 0.291479820627803"; depth 223 ; known ; synonymous GL192568.1 samtools variation 1399346 1399346 . . . alleles " T C"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; synonymous GL192568.1 samtools variation 1430153 1430153 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 39 ; known ; synonymous GL192568.1 samtools variation 1494385 1494385 . . . alleles " A C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192568.1 samtools variation 1508642 1508642 . . . alleles " T A"; frequencies " 0.771604938271605 0.228395061728395"; depth 162 ; unknown ; N/A GL192568.1 samtools variation 1509002 1509002 . . . alleles " C T"; frequencies " 0.242424242424242 0.757575757575758"; depth 33 ; known ; N/A GL192568.1 samtools variation 1510666 1510666 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192568.1 samtools variation 1513788 1513788 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192568.1 samtools variation 1749207 1749207 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192568.1 samtools variation 1757876 1757876 . . . alleles " G A"; frequencies " 0.590909090909091 0.409090909090909"; depth 88 ; unknown ; synonymous GL192568.1 samtools variation 1760236 1760236 . . . alleles " C T"; frequencies " 0.51219512195122 0.48780487804878"; depth 41 ; unknown ; N/A GL192568.1 samtools variation 1764671 1764671 . . . alleles " A G"; frequencies " 0.467309015829319 0.532690984170681"; depth 1453 ; unknown ; synonymous GL192569.1 samtools variation 97564 97564 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 78 ; known ; N/A GL192569.1 samtools variation 98906 98906 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; known ; N/A GL192569.1 samtools variation 444713 444713 . . . alleles " A G"; frequencies " 0.361111111111111 0.638888888888889"; depth 36 ; unknown ; synonymous GL192569.1 samtools variation 444716 444716 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; unknown ; synonymous GL192569.1 samtools variation 757089 757089 . . . alleles " G T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192569.1 samtools variation 1298318 1298318 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192569.1 samtools variation 1300081 1300081 . . . alleles " C T"; frequencies " 0.702127659574468 0.297872340425532"; depth 141 ; unknown ; synonymous GL192570.1 samtools variation 126060 126060 . . . alleles " G T"; frequencies " 0.787234042553192 0.212765957446809"; depth 47 ; unknown ; N/A GL192570.1 samtools variation 133351 133351 . . . alleles " A C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192570.1 samtools variation 168312 168312 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192570.1 samtools variation 177957 177957 . . . alleles " C T"; frequencies " 0.644444444444444 0.355555555555556"; depth 45 ; unknown ; N/A GL192570.1 samtools variation 181374 181374 . . . alleles " T G"; frequencies " 0.796296296296296 0.203703703703704"; depth 54 ; unknown ; N/A GL192570.1 samtools variation 184969 184969 . . . alleles " T C"; frequencies " 0.340136054421769 0.659863945578231"; depth 147 ; known ; N/A GL192570.1 samtools variation 186125 186125 . . . alleles " C T"; frequencies " 0.688073394495413 0.311926605504587"; depth 109 ; known ; N/A GL192570.1 samtools variation 188383 188383 . . . alleles " A T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192570.1 samtools variation 190588 190588 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192570.1 samtools variation 1279217 1279217 . . . alleles " T A"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192570.1 samtools variation 1279653 1279653 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192570.1 samtools variation 1280318 1280318 . . . alleles " A G"; frequencies " 0.23943661971831 0.76056338028169"; depth 71 ; known ; N/A GL192570.1 samtools variation 1396294 1396294 . . . alleles " C G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192570.1 samtools variation 1396557 1396557 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192570.1 samtools variation 1398442 1398442 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192570.1 samtools variation 1489347 1489347 . . . alleles " G A"; frequencies " 0.679886685552408 0.320113314447592"; depth 353 ; known ; N/A GL192570.1 samtools variation 1489420 1489420 . . . alleles " G A"; frequencies " 0.449579831932773 0.550420168067227"; depth 238 ; known ; N/A GL192570.1 samtools variation 1882625 1882625 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; synonymous GL192570.1 samtools variation 1884401 1884401 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192570.1 samtools variation 1885648 1885648 . . . alleles " A G"; frequencies " 0.482758620689655 0.517241379310345"; depth 87 ; known ; N/A GL192570.1 samtools variation 1982938 1982938 . . . alleles " A G"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192570.1 samtools variation 1983051 1983051 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192571.1 samtools variation 2475 2475 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192571.1 samtools variation 14565 14565 . . . alleles " A G"; frequencies " 0.230337078651685 0.764044943820225"; depth 178 ; unknown ; non-synonymous GL192571.1 samtools variation 124344 124344 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192571.1 samtools variation 486621 486621 . . . alleles " A C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192571.1 samtools variation 502115 502115 . . . alleles " C T"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL192571.1 samtools variation 526167 526167 . . . alleles " A C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192571.1 samtools variation 526185 526185 . . . alleles " C A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192571.1 samtools variation 532005 532005 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192571.1 samtools variation 532014 532014 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192571.1 samtools variation 538345 538345 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192571.1 samtools variation 539261 539261 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192571.1 samtools variation 541745 541745 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192571.1 samtools variation 545250 545250 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192571.1 samtools variation 565624 565624 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192571.1 samtools variation 568875 568875 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192571.1 samtools variation 569137 569137 . . . alleles " C G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192571.1 samtools variation 574799 574799 . . . alleles " C T"; frequencies " 0.652631578947368 0.347368421052632"; depth 285 ; unknown ; N/A GL192571.1 samtools variation 575980 575980 . . . alleles " G T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192571.1 samtools variation 593296 593296 . . . alleles " G A"; frequencies " 0.283720930232558 0.716279069767442"; depth 430 ; unknown ; N/A GL192571.1 samtools variation 605087 605087 . . . alleles " G C"; frequencies " 0.221052631578947 0.778947368421053"; depth 95 ; unknown ; N/A GL192571.1 samtools variation 1187263 1187263 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 45 ; unknown ; N/A GL192571.1 samtools variation 1187337 1187337 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192571.1 samtools variation 1319444 1319444 . . . alleles " C T"; frequencies " 0.286231884057971 0.713768115942029"; depth 552 ; unknown ; non-synonymous GL192571.1 samtools variation 1330634 1330634 . . . alleles " A C"; frequencies " 0.78953488372093 0.21046511627907"; depth 860 ; unknown ; non-synonymous GL192571.1 samtools variation 1330868 1330868 . . . alleles " G T"; frequencies " 0.717557251908397 0.282442748091603"; depth 131 ; unknown ; N/A GL192573.1 samtools variation 50427 50427 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192573.1 samtools variation 65556 65556 . . . alleles " A G"; frequencies " 0.598360655737705 0.401639344262295"; depth 122 ; unknown ; N/A GL192573.1 samtools variation 98919 98919 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192573.1 samtools variation 100977 100977 . . . alleles " A G"; frequencies " 0.403061224489796 0.596938775510204"; depth 196 ; unknown ; synonymous GL192573.1 samtools variation 108699 108699 . . . alleles " T A"; frequencies " 0.74025974025974 0.25974025974026"; depth 154 ; unknown ; N/A GL192573.1 samtools variation 112076 112076 . . . alleles " G C"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192573.1 samtools variation 116446 116446 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192573.1 samtools variation 151247 151247 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192573.1 samtools variation 151751 151751 . . . alleles " T C"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL192573.1 samtools variation 152639 152639 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192573.1 samtools variation 153329 153329 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192573.1 samtools variation 157339 157339 . . . alleles " A C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192573.1 samtools variation 159299 159299 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192573.1 samtools variation 214700 214700 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192573.1 samtools variation 227028 227028 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192573.1 samtools variation 227076 227076 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192573.1 samtools variation 320784 320784 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; synonymous GL192573.1 samtools variation 336944 336944 . . . alleles " G C"; frequencies " 0.791208791208791 0.208791208791209"; depth 91 ; unknown ; N/A GL192573.1 samtools variation 337412 337412 . . . alleles " T C"; frequencies " 0.630252100840336 0.369747899159664"; depth 119 ; unknown ; N/A GL192573.1 samtools variation 339381 339381 . . . alleles " A G"; frequencies " 0.783333333333333 0.216666666666667"; depth 60 ; unknown ; N/A GL192573.1 samtools variation 397661 397661 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192573.1 samtools variation 500293 500293 . . . alleles " T G"; frequencies " 0.754385964912281 0.245614035087719"; depth 57 ; unknown ; N/A GL192573.1 samtools variation 570558 570558 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192573.1 samtools variation 573108 573108 . . . alleles " G T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192573.1 samtools variation 580002 580002 . . . alleles " A C"; frequencies " 0.233333333333333 0.766666666666667"; depth 30 ; unknown ; N/A GL192573.1 samtools variation 596738 596738 . . . alleles " C T"; frequencies " 0.5875 0.4125"; depth 80 ; unknown ; synonymous GL192573.1 samtools variation 597830 597830 . . . alleles " G A"; frequencies " 0.74 0.26"; depth 50 ; unknown ; N/A GL192573.1 samtools variation 599063 599063 . . . alleles " C T"; frequencies " 0.733812949640288 0.266187050359712"; depth 139 ; unknown ; N/A GL192573.1 samtools variation 719099 719099 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192573.1 samtools variation 847304 847304 . . . alleles " G T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192573.1 samtools variation 885835 885835 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192573.1 samtools variation 900852 900852 . . . alleles " C T"; frequencies " 0.660377358490566 0.339622641509434"; depth 53 ; unknown ; synonymous GL192573.1 samtools variation 901191 901191 . . . alleles " G A"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL192573.1 samtools variation 906429 906429 . . . alleles " A G"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192573.1 samtools variation 1124251 1124251 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; synonymous GL192573.1 samtools variation 1153793 1153793 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 55 ; unknown ; non-synonymous GL192573.1 samtools variation 1163831 1163831 . . . alleles " G A"; frequencies " 0.245283018867925 0.754716981132076"; depth 53 ; known ; synonymous GL192573.1 samtools variation 1325211 1325211 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192573.1 samtools variation 1332516 1332516 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 63 ; unknown ; N/A GL192573.1 samtools variation 1335251 1335251 . . . alleles " A G"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; unknown ; N/A GL192573.1 samtools variation 1337854 1337854 . . . alleles " T C"; frequencies " 0.796610169491525 0.203389830508475"; depth 59 ; unknown ; N/A GL192573.1 samtools variation 1338947 1338947 . . . alleles " C T"; frequencies " 0.482758620689655 0.517241379310345"; depth 58 ; unknown ; N/A GL192573.1 samtools variation 1338951 1338951 . . . alleles " T G"; frequencies " 0.491228070175439 0.508771929824561"; depth 57 ; unknown ; N/A GL192573.1 samtools variation 1352132 1352132 . . . alleles " A G"; frequencies " 0.280701754385965 0.719298245614035"; depth 57 ; known ; N/A GL192573.1 samtools variation 1371898 1371898 . . . alleles " G T"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192573.1 samtools variation 1489246 1489246 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192573.1 samtools variation 1737182 1737182 . . . alleles " C G"; frequencies " 0.752727272727273 0.247272727272727"; depth 275 ; known ; N/A GL192573.1 samtools variation 1738187 1738187 . . . alleles " G A"; frequencies " 0.789351851851852 0.210648148148148"; depth 432 ; known ; N/A GL192573.1 samtools variation 1739913 1739913 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 72 ; known ; N/A GL192573.1 samtools variation 1743013 1743013 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192573.1 samtools variation 1743631 1743631 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192573.1 samtools variation 1762411 1762411 . . . alleles " T C"; frequencies " 0.41304347826087 0.58695652173913"; depth 46 ; known ; N/A GL192573.1 samtools variation 1913326 1913326 . . . alleles " A C"; frequencies " 0.8 0.2"; depth 40 ; known ; N/A GL192573.1 samtools variation 1917644 1917644 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; synonymous GL192573.1 samtools variation 1946083 1946083 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; non-synonymous GL192574.1 samtools variation 138315 138315 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192574.1 samtools variation 168299 168299 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192574.1 samtools variation 179615 179615 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192574.1 samtools variation 179733 179733 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192574.1 samtools variation 181848 181848 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192574.1 samtools variation 183397 183397 . . . alleles " T G"; frequencies " 0.717171717171717 0.282828282828283"; depth 198 ; unknown ; N/A GL192574.1 samtools variation 183675 183675 . . . alleles " G C"; frequencies " 0.558823529411765 0.441176470588235"; depth 102 ; known ; N/A GL192574.1 samtools variation 183681 183681 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 108 ; known ; N/A GL192574.1 samtools variation 186310 186310 . . . alleles " C G"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL192574.1 samtools variation 202395 202395 . . . alleles " G A"; frequencies " 0.775862068965517 0.224137931034483"; depth 58 ; unknown ; synonymous GL192574.1 samtools variation 307171 307171 . . . alleles " C T"; frequencies " 0.765957446808511 0.234042553191489"; depth 47 ; unknown ; synonymous GL192574.1 samtools variation 368458 368458 . . . alleles " A G"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; synonymous GL192574.1 samtools variation 610707 610707 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 70 ; unknown ; N/A GL192574.1 samtools variation 611685 611685 . . . alleles " A G"; frequencies " 0.229166666666667 0.770833333333333"; depth 48 ; known ; N/A GL192574.1 samtools variation 879529 879529 . . . alleles " T A"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL192574.1 samtools variation 880713 880713 . . . alleles " A T"; frequencies " 0.555555555555556 0.444444444444444"; depth 54 ; known ; N/A GL192574.1 samtools variation 881263 881263 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; known ; N/A GL192574.1 samtools variation 895034 895034 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; synonymous GL192574.1 samtools variation 1961467 1961467 . . . alleles " T C"; frequencies " 0.203703703703704 0.796296296296296"; depth 54 ; known ; N/A GL192574.1 samtools variation 1961966 1961966 . . . alleles " T G"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; unknown ; N/A GL192574.1 samtools variation 1962192 1962192 . . . alleles " T C"; frequencies " 0.648854961832061 0.351145038167939"; depth 131 ; known ; N/A GL192574.1 samtools variation 1962881 1962881 . . . alleles " G A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192575.1 samtools variation 1135869 1135869 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192575.1 samtools variation 1136372 1136372 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192575.1 samtools variation 1356320 1356320 . . . alleles " G A"; frequencies " 0.334905660377358 0.665094339622642"; depth 212 ; unknown ; synonymous GL192575.1 samtools variation 1356398 1356398 . . . alleles " T C"; frequencies " 0.385496183206107 0.614503816793893"; depth 1048 ; unknown ; synonymous GL192575.1 samtools variation 1958401 1958401 . . . alleles " T A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192575.1 samtools variation 1959077 1959077 . . . alleles " G A"; frequencies " 0.347826086956522 0.652173913043478"; depth 69 ; unknown ; N/A GL192575.1 samtools variation 1959087 1959087 . . . alleles " C T"; frequencies " 0.396825396825397 0.603174603174603"; depth 63 ; known ; N/A GL192575.1 samtools variation 1960034 1960034 . . . alleles " C A"; frequencies " 0.222222222222222 0.777777777777778"; depth 63 ; known ; N/A GL192577.1 samtools variation 102213 102213 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192577.1 samtools variation 116245 116245 . . . alleles " T C"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; N/A GL192577.1 samtools variation 116288 116288 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 70 ; unknown ; N/A GL192577.1 samtools variation 117088 117088 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 74 ; known ; N/A GL192577.1 samtools variation 119039 119039 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 72 ; unknown ; N/A GL192577.1 samtools variation 136210 136210 . . . alleles " T C"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192577.1 samtools variation 137046 137046 . . . alleles " C T"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL192577.1 samtools variation 139486 139486 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192577.1 samtools variation 140851 140851 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL192577.1 samtools variation 158668 158668 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192577.1 samtools variation 158815 158815 . . . alleles " T C"; frequencies " 0.761467889908257 0.238532110091743"; depth 109 ; unknown ; N/A GL192577.1 samtools variation 158944 158944 . . . alleles " C A"; frequencies " 0.576388888888889 0.416666666666667"; depth 144 ; unknown ; N/A GL192577.1 samtools variation 159161 159161 . . . alleles " C A"; frequencies " 0.761194029850746 0.238805970149254"; depth 67 ; unknown ; N/A GL192577.1 samtools variation 160398 160398 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192577.1 samtools variation 198592 198592 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192577.1 samtools variation 434159 434159 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192577.1 samtools variation 434259 434259 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192577.1 samtools variation 434320 434320 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192577.1 samtools variation 439710 439710 . . . alleles " T A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192577.1 samtools variation 466688 466688 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192577.1 samtools variation 467712 467712 . . . alleles " C A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192577.1 samtools variation 469014 469014 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192577.1 samtools variation 469015 469015 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192577.1 samtools variation 500641 500641 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192577.1 samtools variation 562299 562299 . . . alleles " A T"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192577.1 samtools variation 565954 565954 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192577.1 samtools variation 567161 567161 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192577.1 samtools variation 571793 571793 . . . alleles " T C"; frequencies " 0.627906976744186 0.372093023255814"; depth 43 ; unknown ; N/A GL192577.1 samtools variation 582156 582156 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192577.1 samtools variation 582669 582669 . . . alleles " A G"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL192577.1 samtools variation 762833 762833 . . . alleles " G T"; frequencies " 0.634615384615385 0.365384615384615"; depth 52 ; unknown ; N/A GL192577.1 samtools variation 763474 763474 . . . alleles " G A"; frequencies " 0.565789473684211 0.434210526315789"; depth 76 ; known ; N/A GL192577.1 samtools variation 763707 763707 . . . alleles " G A"; frequencies " 0.40625 0.59375"; depth 32 ; known ; N/A GL192577.1 samtools variation 767356 767356 . . . alleles " T C"; frequencies " 0.553846153846154 0.446153846153846"; depth 65 ; unknown ; N/A GL192577.1 samtools variation 785344 785344 . . . alleles " A C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192577.1 samtools variation 823425 823425 . . . alleles " C T"; frequencies " 0.551724137931034 0.448275862068966"; depth 58 ; unknown ; N/A GL192577.1 samtools variation 828006 828006 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192577.1 samtools variation 837846 837846 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; known ; N/A GL192577.1 samtools variation 876332 876332 . . . alleles " A G"; frequencies " 0.303317535545024 0.696682464454976"; depth 211 ; known ; synonymous GL192577.1 samtools variation 902555 902555 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 60 ; known ; non-synonymous GL192577.1 samtools variation 906802 906802 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192577.1 samtools variation 1168926 1168926 . . . alleles " G T"; frequencies " 0.26530612244898 0.73469387755102"; depth 49 ; unknown ; synonymous GL192577.1 samtools variation 1190713 1190713 . . . alleles " G A"; frequencies " 0.490566037735849 0.509433962264151"; depth 53 ; known ; N/A GL192577.1 samtools variation 1191094 1191094 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; known ; N/A GL192577.1 samtools variation 1200461 1200461 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192577.1 samtools variation 1202972 1202972 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192577.1 samtools variation 1203534 1203534 . . . alleles " T G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192577.1 samtools variation 1206804 1206804 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192577.1 samtools variation 1208812 1208812 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192578.1 samtools variation 155893 155893 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192578.1 samtools variation 157947 157947 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192578.1 samtools variation 158191 158191 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL192578.1 samtools variation 161781 161781 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192578.1 samtools variation 164930 164930 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192578.1 samtools variation 165318 165318 . . . alleles " A G"; frequencies " 0.404255319148936 0.595744680851064"; depth 47 ; known ; N/A GL192578.1 samtools variation 174384 174384 . . . alleles " A C"; frequencies " 0.513157894736842 0.486842105263158"; depth 76 ; unknown ; N/A GL192578.1 samtools variation 203555 203555 . . . alleles " T A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; synonymous GL192578.1 samtools variation 204669 204669 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; synonymous GL192578.1 samtools variation 207644 207644 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; synonymous GL192578.1 samtools variation 594307 594307 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; synonymous GL192578.1 samtools variation 600949 600949 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192578.1 samtools variation 681891 681891 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192578.1 samtools variation 684521 684521 . . . alleles " G T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192578.1 samtools variation 806378 806378 . . . alleles " T C"; frequencies " 0.639344262295082 0.360655737704918"; depth 61 ; known ; N/A GL192578.1 samtools variation 806555 806555 . . . alleles " G A"; frequencies " 0.480769230769231 0.519230769230769"; depth 52 ; known ; N/A GL192578.1 samtools variation 1018894 1018894 . . . alleles " G A"; frequencies " 0.202898550724638 0.797101449275362"; depth 138 ; known ; synonymous GL192578.1 samtools variation 1019573 1019573 . . . alleles " A T"; frequencies " 0.236842105263158 0.763157894736842"; depth 38 ; known ; non-synonymous GL192578.1 samtools variation 1047372 1047372 . . . alleles " C G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; non-synonymous GL192579.1 samtools variation 25256 25256 . . . alleles " A C"; frequencies " 0.528735632183908 0.471264367816092"; depth 174 ; unknown ; N/A GL192579.1 samtools variation 44932 44932 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 42 ; unknown ; non-synonymous GL192579.1 samtools variation 159835 159835 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 48 ; unknown ; synonymous GL192579.1 samtools variation 160915 160915 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192579.1 samtools variation 161831 161831 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192579.1 samtools variation 169080 169080 . . . alleles " A G"; frequencies " 0.494845360824742 0.505154639175258"; depth 97 ; unknown ; non-synonymous GL192579.1 samtools variation 175517 175517 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; synonymous GL192579.1 samtools variation 178729 178729 . . . alleles " G C"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; unknown ; N/A GL192579.1 samtools variation 178744 178744 . . . alleles " T A"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; unknown ; N/A GL192579.1 samtools variation 178840 178840 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192579.1 samtools variation 179441 179441 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; non-synonymous GL192579.1 samtools variation 187018 187018 . . . alleles " G A"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; synonymous GL192579.1 samtools variation 237397 237397 . . . alleles " G C"; frequencies " 0.564516129032258 0.435483870967742"; depth 62 ; unknown ; N/A GL192579.1 samtools variation 237582 237582 . . . alleles " G A"; frequencies " 0.674107142857143 0.325892857142857"; depth 224 ; unknown ; N/A GL192579.1 samtools variation 237746 237746 . . . alleles " C T"; frequencies " 0.691304347826087 0.308695652173913"; depth 230 ; unknown ; N/A GL192579.1 samtools variation 238000 238000 . . . alleles " T C"; frequencies " 0.611764705882353 0.388235294117647"; depth 85 ; unknown ; N/A GL192579.1 samtools variation 238279 238279 . . . alleles " C T"; frequencies " 0.41304347826087 0.58695652173913"; depth 138 ; known ; N/A GL192579.1 samtools variation 239712 239712 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192579.1 samtools variation 242204 242204 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192579.1 samtools variation 245982 245982 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192579.1 samtools variation 246036 246036 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192579.1 samtools variation 249497 249497 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192579.1 samtools variation 249862 249862 . . . alleles " A C"; frequencies " 0.616279069767442 0.377906976744186"; depth 172 ; unknown ; synonymous GL192579.1 samtools variation 264113 264113 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 88 ; unknown ; synonymous GL192579.1 samtools variation 311595 311595 . . . alleles " G T"; frequencies " 0.763713080168776 0.236286919831224"; depth 237 ; unknown ; N/A GL192579.1 samtools variation 313758 313758 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192579.1 samtools variation 314829 314829 . . . alleles " C T"; frequencies " 0.660117878192534 0.339882121807466"; depth 509 ; unknown ; synonymous GL192579.1 samtools variation 314895 314895 . . . alleles " G A"; frequencies " 0.726681127982646 0.273318872017354"; depth 461 ; unknown ; synonymous GL192579.1 samtools variation 314950 314950 . . . alleles " G A"; frequencies " 0.75049504950495 0.24950495049505"; depth 505 ; unknown ; non-synonymous GL192579.1 samtools variation 319864 319864 . . . alleles " T C"; frequencies " 0.535031847133758 0.464968152866242"; depth 157 ; unknown ; N/A GL192579.1 samtools variation 461399 461399 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192579.1 samtools variation 461440 461440 . . . alleles " T G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192579.1 samtools variation 462033 462033 . . . alleles " G C"; frequencies " 0.754716981132076 0.245283018867925"; depth 53 ; unknown ; N/A GL192579.1 samtools variation 462160 462160 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192579.1 samtools variation 462923 462923 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL192579.1 samtools variation 604320 604320 . . . alleles " G T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192579.1 samtools variation 886803 886803 . . . alleles " C A"; frequencies " 0.547169811320755 0.452830188679245"; depth 53 ; unknown ; N/A GL192579.1 samtools variation 886949 886949 . . . alleles " C T"; frequencies " 0.634615384615385 0.365384615384615"; depth 52 ; unknown ; N/A GL192579.1 samtools variation 887529 887529 . . . alleles " A T"; frequencies " 0.568627450980392 0.431372549019608"; depth 51 ; unknown ; N/A GL192579.1 samtools variation 888953 888953 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192579.1 samtools variation 890539 890539 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL192579.1 samtools variation 891607 891607 . . . alleles " T C"; frequencies " 0.595238095238095 0.404761904761905"; depth 42 ; unknown ; N/A GL192579.1 samtools variation 891617 891617 . . . alleles " A G"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; unknown ; N/A GL192579.1 samtools variation 892088 892088 . . . alleles " A G"; frequencies " 0.39622641509434 0.60377358490566"; depth 53 ; unknown ; N/A GL192579.1 samtools variation 892094 892094 . . . alleles " A G"; frequencies " 0.387755102040816 0.612244897959184"; depth 49 ; unknown ; N/A GL192579.1 samtools variation 892505 892505 . . . alleles " C G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192579.1 samtools variation 892647 892647 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192579.1 samtools variation 892651 892651 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192579.1 samtools variation 894670 894670 . . . alleles " C A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192579.1 samtools variation 894677 894677 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192579.1 samtools variation 896611 896611 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL192579.1 samtools variation 901998 901998 . . . alleles " C A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192579.1 samtools variation 903512 903512 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192579.1 samtools variation 903750 903750 . . . alleles " G C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192579.1 samtools variation 903779 903779 . . . alleles " A T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192579.1 samtools variation 1087821 1087821 . . . alleles " G C"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; synonymous GL192579.1 samtools variation 1092670 1092670 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; non-synonymous GL192579.1 samtools variation 1632859 1632859 . . . alleles " A T"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192579.1 samtools variation 1636201 1636201 . . . alleles " T A"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL192579.1 samtools variation 1638932 1638932 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192579.1 samtools variation 1662807 1662807 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192580.1 samtools variation 44083 44083 . . . alleles " G A"; frequencies " 0.44 0.56"; depth 25 ; unknown ; non-synonymous GL192580.1 samtools variation 164109 164109 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 52 ; unknown ; N/A GL192580.1 samtools variation 164110 164110 . . . alleles " C T"; frequencies " 0.754716981132076 0.245283018867925"; depth 53 ; unknown ; N/A GL192580.1 samtools variation 222159 222159 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; synonymous GL192580.1 samtools variation 223162 223162 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; non-synonymous GL192580.1 samtools variation 223428 223428 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; synonymous GL192580.1 samtools variation 223429 223429 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; non-synonymous GL192580.1 samtools variation 312762 312762 . . . alleles " A G"; frequencies " 0.422018348623853 0.577981651376147"; depth 109 ; unknown ; synonymous GL192580.1 samtools variation 326876 326876 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192580.1 samtools variation 416472 416472 . . . alleles " G T"; frequencies " 0.60952380952381 0.39047619047619"; depth 105 ; unknown ; N/A GL192580.1 samtools variation 417949 417949 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192580.1 samtools variation 669384 669384 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192580.1 samtools variation 696779 696779 . . . alleles " C T"; frequencies " 0.681710213776722 0.318289786223278"; depth 421 ; unknown ; synonymous GL192580.1 samtools variation 703018 703018 . . . alleles " C T"; frequencies " 0.514506769825919 0.485493230174081"; depth 517 ; unknown ; synonymous GL192580.1 samtools variation 716145 716145 . . . alleles " T A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192580.1 samtools variation 742827 742827 . . . alleles " T C"; frequencies " 0.36 0.64"; depth 25 ; known ; non-synonymous GL192580.1 samtools variation 744834 744834 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; non-synonymous GL192580.1 samtools variation 776876 776876 . . . alleles " T C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL192580.1 samtools variation 777204 777204 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 63 ; unknown ; N/A GL192580.1 samtools variation 779021 779021 . . . alleles " G A"; frequencies " 0.390243902439024 0.609756097560976"; depth 41 ; unknown ; N/A GL192580.1 samtools variation 779929 779929 . . . alleles " C A"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; non-synonymous GL192580.1 samtools variation 780166 780166 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192580.1 samtools variation 1118031 1118031 . . . alleles " C T"; frequencies " 0.336787564766839 0.663212435233161"; depth 193 ; unknown ; N/A GL192580.1 samtools variation 1159671 1159671 . . . alleles " T G"; frequencies " 0.309090909090909 0.690909090909091"; depth 55 ; unknown ; N/A GL192580.1 samtools variation 1163699 1163699 . . . alleles " A G"; frequencies " 0.248945147679325 0.751054852320675"; depth 237 ; unknown ; N/A GL192580.1 samtools variation 1165780 1165780 . . . alleles " C T"; frequencies " 0.383116883116883 0.616883116883117"; depth 308 ; unknown ; N/A GL192580.1 samtools variation 1268565 1268565 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192580.1 samtools variation 1277900 1277900 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 32 ; known ; N/A GL192580.1 samtools variation 1277957 1277957 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; unknown ; N/A GL192580.1 samtools variation 1628130 1628130 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL192580.1 samtools variation 1628784 1628784 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192580.1 samtools variation 1672149 1672149 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192580.1 samtools variation 1672156 1672156 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192580.1 samtools variation 1672285 1672285 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192580.1 samtools variation 1672389 1672389 . . . alleles " G C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192580.1 samtools variation 1677588 1677588 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192580.1 samtools variation 1683779 1683779 . . . alleles " G A"; frequencies " 0.530612244897959 0.469387755102041"; depth 49 ; unknown ; N/A GL192580.1 samtools variation 1683864 1683864 . . . alleles " G C"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192580.1 samtools variation 1684119 1684119 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192580.1 samtools variation 1684277 1684277 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192580.1 samtools variation 1686977 1686977 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192580.1 samtools variation 1710572 1710572 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 154 ; known ; N/A GL192580.1 samtools variation 1710615 1710615 . . . alleles " T G"; frequencies " 0.619047619047619 0.380952380952381"; depth 126 ; known ; N/A GL192581.1 samtools variation 449884 449884 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 60 ; unknown ; N/A GL192581.1 samtools variation 631496 631496 . . . alleles " T C"; frequencies " 0.721238938053097 0.278761061946903"; depth 452 ; unknown ; synonymous GL192581.1 samtools variation 631694 631694 . . . alleles " C A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192581.1 samtools variation 638540 638540 . . . alleles " A G"; frequencies " 0.747252747252747 0.252747252747253"; depth 91 ; unknown ; N/A GL192581.1 samtools variation 638599 638599 . . . alleles " T G"; frequencies " 0.797385620915033 0.202614379084967"; depth 153 ; unknown ; N/A GL192581.1 samtools variation 638867 638867 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL192581.1 samtools variation 638927 638927 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; unknown ; N/A GL192581.1 samtools variation 639589 639589 . . . alleles " C G"; frequencies " 0.464285714285714 0.5"; depth 28 ; unknown ; N/A GL192581.1 samtools variation 641862 641862 . . . alleles " A G"; frequencies " 0.716814159292035 0.283185840707965"; depth 113 ; unknown ; N/A GL192581.1 samtools variation 642591 642591 . . . alleles " T A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192581.1 samtools variation 642633 642633 . . . alleles " T A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192581.1 samtools variation 642634 642634 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192581.1 samtools variation 642703 642703 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192581.1 samtools variation 645631 645631 . . . alleles " T C"; frequencies " 0.682051282051282 0.317948717948718"; depth 195 ; known ; N/A GL192581.1 samtools variation 647051 647051 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL192581.1 samtools variation 647154 647154 . . . alleles " G A"; frequencies " 0.758064516129032 0.241935483870968"; depth 62 ; known ; N/A GL192581.1 samtools variation 647351 647351 . . . alleles " C T"; frequencies " 0.348214285714286 0.651785714285714"; depth 112 ; known ; N/A GL192581.1 samtools variation 647594 647594 . . . alleles " T A"; frequencies " 0.379084967320261 0.620915032679739"; depth 153 ; known ; N/A GL192581.1 samtools variation 648749 648749 . . . alleles " G T"; frequencies " 0.385964912280702 0.614035087719298"; depth 57 ; known ; N/A GL192581.1 samtools variation 649090 649090 . . . alleles " C T"; frequencies " 0.318181818181818 0.681818181818182"; depth 44 ; known ; N/A GL192581.1 samtools variation 650441 650441 . . . alleles " T C"; frequencies " 0.217391304347826 0.782608695652174"; depth 46 ; known ; N/A GL192581.1 samtools variation 652621 652621 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 46 ; unknown ; N/A GL192581.1 samtools variation 653345 653345 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192581.1 samtools variation 719315 719315 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192581.1 samtools variation 719520 719520 . . . alleles " C A"; frequencies " 0.42 0.58"; depth 50 ; unknown ; N/A GL192581.1 samtools variation 719574 719574 . . . alleles " C A"; frequencies " 0.584905660377358 0.415094339622642"; depth 53 ; unknown ; N/A GL192581.1 samtools variation 719887 719887 . . . alleles " T C"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL192581.1 samtools variation 720061 720061 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192581.1 samtools variation 720175 720175 . . . alleles " A G"; frequencies " 0.576271186440678 0.423728813559322"; depth 59 ; unknown ; N/A GL192581.1 samtools variation 720337 720337 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL192581.1 samtools variation 720885 720885 . . . alleles " C T"; frequencies " 0.755102040816326 0.244897959183673"; depth 49 ; unknown ; N/A GL192581.1 samtools variation 720981 720981 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 64 ; unknown ; N/A GL192581.1 samtools variation 721329 721329 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 58 ; unknown ; N/A GL192581.1 samtools variation 721711 721711 . . . alleles " A C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192581.1 samtools variation 730253 730253 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192581.1 samtools variation 730365 730365 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192581.1 samtools variation 960454 960454 . . . alleles " G A"; frequencies " 0.71563981042654 0.28436018957346"; depth 211 ; unknown ; synonymous GL192581.1 samtools variation 966448 966448 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192581.1 samtools variation 966457 966457 . . . alleles " G A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192581.1 samtools variation 968459 968459 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192581.1 samtools variation 971316 971316 . . . alleles " A T"; frequencies " 0.791044776119403 0.208955223880597"; depth 67 ; unknown ; N/A GL192581.1 samtools variation 971947 971947 . . . alleles " G A"; frequencies " 0.741379310344828 0.258620689655172"; depth 116 ; unknown ; N/A GL192581.1 samtools variation 972504 972504 . . . alleles " C A"; frequencies " 0.768041237113402 0.231958762886598"; depth 194 ; unknown ; N/A GL192581.1 samtools variation 972545 972545 . . . alleles " G A"; frequencies " 0.78448275862069 0.21551724137931"; depth 116 ; unknown ; N/A GL192581.1 samtools variation 973482 973482 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192581.1 samtools variation 978234 978234 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192581.1 samtools variation 981206 981206 . . . alleles " G T"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; N/A GL192581.1 samtools variation 981777 981777 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192581.1 samtools variation 981852 981852 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 48 ; unknown ; N/A GL192581.1 samtools variation 982799 982799 . . . alleles " G A"; frequencies " 0.794871794871795 0.205128205128205"; depth 117 ; unknown ; N/A GL192581.1 samtools variation 984097 984097 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192581.1 samtools variation 991145 991145 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192581.1 samtools variation 1284033 1284033 . . . alleles " G A"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; known ; N/A GL192581.1 samtools variation 1288701 1288701 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192581.1 samtools variation 1289406 1289406 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192581.1 samtools variation 1289549 1289549 . . . alleles " T C"; frequencies " 0.404255319148936 0.595744680851064"; depth 47 ; unknown ; N/A GL192581.1 samtools variation 1289879 1289879 . . . alleles " C G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192581.1 samtools variation 1289889 1289889 . . . alleles " G C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192581.1 samtools variation 1763170 1763170 . . . alleles " C T"; frequencies " 0.661016949152542 0.338983050847458"; depth 59 ; known ; N/A GL192581.1 samtools variation 1765137 1765137 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192581.1 samtools variation 1765304 1765304 . . . alleles " G A"; frequencies " 0.733333333333333 0.2"; depth 15 ; known ; N/A GL192581.1 samtools variation 1767237 1767237 . . . alleles " T C"; frequencies " 0.523809523809524 0.476190476190476"; depth 42 ; known ; N/A GL192581.1 samtools variation 1767982 1767982 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 32 ; known ; N/A GL192581.1 samtools variation 1768180 1768180 . . . alleles " T C"; frequencies " 0.404255319148936 0.595744680851064"; depth 47 ; known ; N/A GL192581.1 samtools variation 1775026 1775026 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192581.1 samtools variation 1838349 1838349 . . . alleles " T C"; frequencies " 0.788321167883212 0.211678832116788"; depth 137 ; unknown ; non-synonymous GL192582.1 samtools variation 380502 380502 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; non-synonymous GL192582.1 samtools variation 726242 726242 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; synonymous GL192582.1 samtools variation 726269 726269 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; synonymous GL192582.1 samtools variation 1346283 1346283 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192583.1 samtools variation 244246 244246 . . . alleles " G A"; frequencies " 0.512396694214876 0.487603305785124"; depth 121 ; unknown ; N/A GL192583.1 samtools variation 244295 244295 . . . alleles " A G"; frequencies " 0.457831325301205 0.542168674698795"; depth 83 ; unknown ; N/A GL192583.1 samtools variation 261082 261082 . . . alleles " C T"; frequencies " 0.606060606060606 0.393939393939394"; depth 99 ; unknown ; synonymous GL192583.1 samtools variation 272859 272859 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 110 ; unknown ; synonymous GL192583.1 samtools variation 287225 287225 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192583.1 samtools variation 287951 287951 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192583.1 samtools variation 288703 288703 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192583.1 samtools variation 292919 292919 . . . alleles " G A"; frequencies " 0.485804416403785 0.511041009463722"; depth 317 ; unknown ; N/A GL192583.1 samtools variation 293490 293490 . . . alleles " A G"; frequencies " 0.530612244897959 0.469387755102041"; depth 196 ; unknown ; N/A GL192583.1 samtools variation 807194 807194 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192583.1 samtools variation 811124 811124 . . . alleles " C T"; frequencies " 0.589285714285714 0.410714285714286"; depth 56 ; known ; non-synonymous GL192583.1 samtools variation 811198 811198 . . . alleles " T A"; frequencies " 0.8 0.2"; depth 65 ; known ; non-synonymous GL192583.1 samtools variation 812059 812059 . . . alleles " A G"; frequencies " 0.488888888888889 0.511111111111111"; depth 45 ; known ; non-synonymous GL192583.1 samtools variation 812148 812148 . . . alleles " T G"; frequencies " 0.76 0.24"; depth 25 ; unknown ; non-synonymous GL192583.1 samtools variation 822712 822712 . . . alleles " A G"; frequencies " 0.564814814814815 0.435185185185185"; depth 108 ; known ; N/A GL192583.1 samtools variation 823158 823158 . . . alleles " G C"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; N/A GL192583.1 samtools variation 832074 832074 . . . alleles " A G"; frequencies " 0.423076923076923 0.576923076923077"; depth 52 ; known ; synonymous GL192583.1 samtools variation 885639 885639 . . . alleles " G T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192583.1 samtools variation 902477 902477 . . . alleles " A G"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; known ; N/A GL192583.1 samtools variation 902488 902488 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 32 ; known ; N/A GL192583.1 samtools variation 916606 916606 . . . alleles " G T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192583.1 samtools variation 926523 926523 . . . alleles " A G"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; known ; N/A GL192583.1 samtools variation 929860 929860 . . . alleles " G A"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; N/A GL192583.1 samtools variation 936443 936443 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192583.1 samtools variation 938832 938832 . . . alleles " A G"; frequencies " 0.58 0.42"; depth 50 ; known ; N/A GL192583.1 samtools variation 939134 939134 . . . alleles " A G"; frequencies " 0.236363636363636 0.763636363636364"; depth 165 ; known ; N/A GL192583.1 samtools variation 941141 941141 . . . alleles " A G"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; known ; N/A GL192583.1 samtools variation 943778 943778 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 150 ; unknown ; N/A GL192583.1 samtools variation 944451 944451 . . . alleles " T C"; frequencies " 0.712962962962963 0.287037037037037"; depth 108 ; unknown ; N/A GL192583.1 samtools variation 988361 988361 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192583.1 samtools variation 989250 989250 . . . alleles " G A"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; known ; synonymous GL192583.1 samtools variation 989371 989371 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; non-synonymous GL192583.1 samtools variation 989994 989994 . . . alleles " G A"; frequencies " 0.482758620689655 0.517241379310345"; depth 58 ; unknown ; synonymous GL192583.1 samtools variation 1080962 1080962 . . . alleles " G A"; frequencies " 0.658823529411765 0.341176470588235"; depth 510 ; known ; N/A GL192583.1 samtools variation 1081065 1081065 . . . alleles " T C"; frequencies " 0.543137254901961 0.456862745098039"; depth 510 ; known ; N/A GL192583.1 samtools variation 1081116 1081116 . . . alleles " T C"; frequencies " 0.496124031007752 0.503875968992248"; depth 645 ; known ; N/A GL192583.1 samtools variation 1081120 1081120 . . . alleles " C A"; frequencies " 0.75811209439528 0.24188790560472"; depth 678 ; unknown ; N/A GL192583.1 samtools variation 1083755 1083755 . . . alleles " T C"; frequencies " 0.489252814738997 0.510747185261003"; depth 977 ; known ; N/A GL192583.1 samtools variation 1084019 1084019 . . . alleles " C T"; frequencies " 0.303172737955347 0.696827262044653"; depth 1702 ; known ; N/A GL192583.1 samtools variation 1084044 1084044 . . . alleles " C G"; frequencies " 0.275331935709294 0.724668064290706"; depth 1431 ; known ; N/A GL192583.1 samtools variation 1422134 1422134 . . . alleles " C G"; frequencies " 0.722488038277512 0.277511961722488"; depth 209 ; known ; N/A GL192583.1 samtools variation 1428150 1428150 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192583.1 samtools variation 1429930 1429930 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192583.1 samtools variation 1453948 1453948 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192583.1 samtools variation 1454320 1454320 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192583.1 samtools variation 1479916 1479916 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192583.1 samtools variation 1602934 1602934 . . . alleles " G A"; frequencies " 0.704545454545455 0.295454545454545"; depth 88 ; unknown ; synonymous GL192583.1 samtools variation 1609955 1609955 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192583.1 samtools variation 1858873 1858873 . . . alleles " G A"; frequencies " 0.634782608695652 0.365217391304348"; depth 115 ; unknown ; N/A GL192583.1 samtools variation 1860573 1860573 . . . alleles " G A"; frequencies " 0.662790697674419 0.337209302325581"; depth 172 ; unknown ; N/A GL192583.1 samtools variation 1862738 1862738 . . . alleles " C T"; frequencies " 0.585106382978723 0.414893617021277"; depth 94 ; known ; N/A GL192583.1 samtools variation 1865306 1865306 . . . alleles " C T"; frequencies " 0.7421875 0.2578125"; depth 128 ; known ; N/A GL192583.1 samtools variation 1877147 1877147 . . . alleles " G A"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192583.1 samtools variation 1937644 1937644 . . . alleles " C T"; frequencies " 0.745454545454545 0.254545454545455"; depth 55 ; unknown ; N/A GL192583.1 samtools variation 1938261 1938261 . . . alleles " T C"; frequencies " 0.621951219512195 0.378048780487805"; depth 82 ; unknown ; N/A GL192584.1 samtools variation 1251345 1251345 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192584.1 samtools variation 1529204 1529204 . . . alleles " C A"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; known ; N/A GL192584.1 samtools variation 1766986 1766986 . . . alleles " A G"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192584.1 samtools variation 1769232 1769232 . . . alleles " C G"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192584.1 samtools variation 1777649 1777649 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192584.1 samtools variation 1810906 1810906 . . . alleles " G T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; non-synonymous GL192584.1 samtools variation 1842789 1842789 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192584.1 samtools variation 1849699 1849699 . . . alleles " C A"; frequencies " 0.461038961038961 0.538961038961039"; depth 154 ; known ; N/A GL192585.1 samtools variation 219313 219313 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192585.1 samtools variation 221514 221514 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; synonymous GL192585.1 samtools variation 728637 728637 . . . alleles " G A"; frequencies " 0.663321167883212 0.336678832116788"; depth 1096 ; unknown ; N/A GL192585.1 samtools variation 728652 728652 . . . alleles " C T"; frequencies " 0.687376725838264 0.312623274161736"; depth 1014 ; unknown ; N/A GL192585.1 samtools variation 1269392 1269392 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192585.1 samtools variation 1270622 1270622 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192585.1 samtools variation 1471811 1471811 . . . alleles " T A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192585.1 samtools variation 1483708 1483708 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192585.1 samtools variation 1923453 1923453 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192585.1 samtools variation 1924677 1924677 . . . alleles " T C"; frequencies " 0.279411764705882 0.720588235294118"; depth 68 ; known ; N/A GL192585.1 samtools variation 1924937 1924937 . . . alleles " T C"; frequencies " 0.675675675675676 0.324324324324324"; depth 74 ; known ; N/A GL192586.1 samtools variation 62666 62666 . . . alleles " G A"; frequencies " 0.542553191489362 0.457446808510638"; depth 470 ; known ; synonymous GL192586.1 samtools variation 63156 63156 . . . alleles " G T"; frequencies " 0.49171270718232 0.50828729281768"; depth 181 ; known ; N/A GL192586.1 samtools variation 63329 63329 . . . alleles " G A"; frequencies " 0.459119496855346 0.540880503144654"; depth 159 ; known ; N/A GL192586.1 samtools variation 63624 63624 . . . alleles " G A"; frequencies " 0.472789115646259 0.527210884353742"; depth 294 ; known ; synonymous GL192586.1 samtools variation 64090 64090 . . . alleles " A G"; frequencies " 0.566666666666667 0.433333333333333"; depth 150 ; known ; N/A GL192586.1 samtools variation 64358 64358 . . . alleles " A C"; frequencies " 0.487084870848708 0.512915129151292"; depth 271 ; known ; N/A GL192586.1 samtools variation 64986 64986 . . . alleles " G A"; frequencies " 0.450867052023121 0.549132947976879"; depth 173 ; known ; N/A GL192586.1 samtools variation 65080 65080 . . . alleles " A G"; frequencies " 0.463414634146341 0.536585365853659"; depth 205 ; known ; N/A GL192586.1 samtools variation 71009 71009 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192586.1 samtools variation 71107 71107 . . . alleles " T C"; frequencies " 0.472222222222222 0.527777777777778"; depth 36 ; known ; N/A GL192586.1 samtools variation 71183 71183 . . . alleles " G A"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; known ; N/A GL192586.1 samtools variation 71977 71977 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192586.1 samtools variation 72030 72030 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL192586.1 samtools variation 72040 72040 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192586.1 samtools variation 72914 72914 . . . alleles " C T"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; known ; N/A GL192586.1 samtools variation 74079 74079 . . . alleles " G T"; frequencies " 0.772058823529412 0.227941176470588"; depth 136 ; known ; N/A GL192586.1 samtools variation 74234 74234 . . . alleles " C A"; frequencies " 0.5 0.491071428571429"; depth 112 ; known ; N/A GL192586.1 samtools variation 74392 74392 . . . alleles " C T"; frequencies " 0.79874213836478 0.20125786163522"; depth 159 ; known ; N/A GL192586.1 samtools variation 79973 79973 . . . alleles " T A"; frequencies " 0.728571428571429 0.271428571428571"; depth 70 ; unknown ; N/A GL192586.1 samtools variation 87404 87404 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192586.1 samtools variation 87604 87604 . . . alleles " T C"; frequencies " 0.53411306042885 0.46588693957115"; depth 513 ; known ; synonymous GL192586.1 samtools variation 110872 110872 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192586.1 samtools variation 115203 115203 . . . alleles " T G"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192586.1 samtools variation 130017 130017 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192586.1 samtools variation 149271 149271 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192586.1 samtools variation 150842 150842 . . . alleles " T C"; frequencies " 0.364864864864865 0.635135135135135"; depth 74 ; known ; synonymous GL192586.1 samtools variation 151598 151598 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192586.1 samtools variation 153869 153869 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192586.1 samtools variation 154057 154057 . . . alleles " T C"; frequencies " 0.376623376623377 0.623376623376623"; depth 77 ; known ; synonymous GL192586.1 samtools variation 154514 154514 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192586.1 samtools variation 155075 155075 . . . alleles " T C"; frequencies " 0.360655737704918 0.639344262295082"; depth 183 ; known ; N/A GL192586.1 samtools variation 155459 155459 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192586.1 samtools variation 186273 186273 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192586.1 samtools variation 199855 199855 . . . alleles " A G"; frequencies " 0.424242424242424 0.575757575757576"; depth 99 ; unknown ; non-synonymous GL192586.1 samtools variation 209096 209096 . . . alleles " G A"; frequencies " 0.53551912568306 0.46448087431694"; depth 183 ; unknown ; N/A GL192586.1 samtools variation 209886 209886 . . . alleles " C T"; frequencies " 0.741935483870968 0.258064516129032"; depth 124 ; unknown ; N/A GL192586.1 samtools variation 210187 210187 . . . alleles " A G"; frequencies " 0.506329113924051 0.493670886075949"; depth 79 ; unknown ; N/A GL192586.1 samtools variation 212430 212430 . . . alleles " A G"; frequencies " 0.4875 0.5125"; depth 80 ; unknown ; N/A GL192586.1 samtools variation 212638 212638 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192586.1 samtools variation 213093 213093 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192586.1 samtools variation 213883 213883 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 48 ; unknown ; N/A GL192586.1 samtools variation 214249 214249 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 40 ; unknown ; N/A GL192586.1 samtools variation 218978 218978 . . . alleles " T C"; frequencies " 0.341463414634146 0.658536585365854"; depth 41 ; unknown ; N/A GL192586.1 samtools variation 219630 219630 . . . alleles " C T"; frequencies " 0.547826086956522 0.452173913043478"; depth 115 ; unknown ; N/A GL192586.1 samtools variation 255888 255888 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192586.1 samtools variation 269067 269067 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL192586.1 samtools variation 300650 300650 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192586.1 samtools variation 302509 302509 . . . alleles " T C"; frequencies " 0.716981132075472 0.283018867924528"; depth 53 ; known ; N/A GL192586.1 samtools variation 305537 305537 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; N/A GL192586.1 samtools variation 306953 306953 . . . alleles " A T"; frequencies " 0.795774647887324 0.204225352112676"; depth 142 ; known ; N/A GL192586.1 samtools variation 314190 314190 . . . alleles " G C"; frequencies " 0.663636363636364 0.336363636363636"; depth 110 ; unknown ; N/A GL192586.1 samtools variation 331591 331591 . . . alleles " A G"; frequencies " 0.442028985507246 0.557971014492754"; depth 138 ; known ; N/A GL192586.1 samtools variation 331601 331601 . . . alleles " T C"; frequencies " 0.573333333333333 0.426666666666667"; depth 150 ; known ; N/A GL192586.1 samtools variation 331672 331672 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 226 ; known ; N/A GL192586.1 samtools variation 332802 332802 . . . alleles " T A"; frequencies " 0.56 0.44"; depth 50 ; known ; N/A GL192586.1 samtools variation 333371 333371 . . . alleles " G T"; frequencies " 0.767195767195767 0.232804232804233"; depth 189 ; known ; N/A GL192586.1 samtools variation 333756 333756 . . . alleles " A G"; frequencies " 0.584745762711864 0.415254237288136"; depth 354 ; unknown ; N/A GL192586.1 samtools variation 333883 333883 . . . alleles " T C"; frequencies " 0.464788732394366 0.535211267605634"; depth 284 ; known ; N/A GL192586.1 samtools variation 334138 334138 . . . alleles " G C"; frequencies " 0.216216216216216 0.783783783783784"; depth 74 ; known ; N/A GL192586.1 samtools variation 334365 334365 . . . alleles " C T"; frequencies " 0.481081081081081 0.518918918918919"; depth 370 ; known ; N/A GL192586.1 samtools variation 334800 334800 . . . alleles " G A"; frequencies " 0.756410256410256 0.243589743589744"; depth 78 ; known ; N/A GL192586.1 samtools variation 334960 334960 . . . alleles " T G"; frequencies " 0.660377358490566 0.339622641509434"; depth 53 ; known ; synonymous GL192586.1 samtools variation 336323 336323 . . . alleles " G T"; frequencies " 0.511627906976744 0.488372093023256"; depth 172 ; known ; N/A GL192586.1 samtools variation 336905 336905 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 80 ; unknown ; N/A GL192586.1 samtools variation 337926 337926 . . . alleles " A G"; frequencies " 0.344322344322344 0.655677655677656"; depth 273 ; known ; N/A GL192586.1 samtools variation 338042 338042 . . . alleles " G C"; frequencies " 0.597744360902256 0.402255639097744"; depth 266 ; known ; N/A GL192586.1 samtools variation 338363 338363 . . . alleles " T C"; frequencies " 0.407534246575342 0.592465753424658"; depth 292 ; known ; N/A GL192586.1 samtools variation 338798 338798 . . . alleles " T C"; frequencies " 0.591016548463357 0.408983451536643"; depth 423 ; known ; N/A GL192586.1 samtools variation 338976 338976 . . . alleles " A G"; frequencies " 0.339622641509434 0.660377358490566"; depth 53 ; known ; N/A GL192586.1 samtools variation 339129 339129 . . . alleles " A C"; frequencies " 0.44375 0.55625"; depth 160 ; known ; N/A GL192586.1 samtools variation 372124 372124 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; known ; synonymous GL192586.1 samtools variation 775887 775887 . . . alleles " A G"; frequencies " 0.303030303030303 0.696969696969697"; depth 33 ; known ; N/A GL192586.1 samtools variation 793134 793134 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; known ; non-synonymous GL192586.1 samtools variation 802605 802605 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; synonymous GL192586.1 samtools variation 1192359 1192359 . . . alleles " C A"; frequencies " 0.680851063829787 0.319148936170213"; depth 47 ; unknown ; N/A GL192586.1 samtools variation 1350511 1350511 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 20 ; unknown ; synonymous GL192586.1 samtools variation 1351165 1351165 . . . alleles " T C"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; synonymous GL192586.1 samtools variation 1356937 1356937 . . . alleles " G A"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; unknown ; synonymous GL192587.1 samtools variation 982034 982034 . . . alleles " T A"; frequencies " 0.728033472803347 0.246861924686192"; depth 239 ; unknown ; N/A GL192587.1 samtools variation 1008182 1008182 . . . alleles " C A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192587.1 samtools variation 1010238 1010238 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 830 ; known ; N/A GL192587.1 samtools variation 1010425 1010425 . . . alleles " C T"; frequencies " 0.646464646464647 0.353535353535354"; depth 198 ; known ; N/A GL192587.1 samtools variation 1187737 1187737 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; non-synonymous GL192588.1 samtools variation 592022 592022 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192588.1 samtools variation 630764 630764 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192588.1 samtools variation 750217 750217 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192588.1 samtools variation 956637 956637 . . . alleles " G A"; frequencies " 0.757894736842105 0.242105263157895"; depth 95 ; unknown ; N/A GL192588.1 samtools variation 956657 956657 . . . alleles " G A"; frequencies " 0.690909090909091 0.309090909090909"; depth 110 ; known ; N/A GL192588.1 samtools variation 964220 964220 . . . alleles " G A"; frequencies " 0.626865671641791 0.373134328358209"; depth 67 ; unknown ; N/A GL192588.1 samtools variation 967269 967269 . . . alleles " G T"; frequencies " 0.252066115702479 0.747933884297521"; depth 242 ; known ; non-synonymous GL192588.1 samtools variation 972790 972790 . . . alleles " C T"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL192588.1 samtools variation 1050316 1050316 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192588.1 samtools variation 1050558 1050558 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192588.1 samtools variation 1114997 1114997 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192588.1 samtools variation 1116134 1116134 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL192588.1 samtools variation 1150780 1150780 . . . alleles " T C"; frequencies " 0.691358024691358 0.308641975308642"; depth 81 ; known ; N/A GL192588.1 samtools variation 1150929 1150929 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 48 ; known ; N/A GL192588.1 samtools variation 1172645 1172645 . . . alleles " C G"; frequencies " 0.304347826086957 0.695652173913043"; depth 46 ; known ; N/A GL192588.1 samtools variation 1178717 1178717 . . . alleles " G A"; frequencies " 0.657534246575342 0.342465753424658"; depth 292 ; known ; synonymous GL192588.1 samtools variation 1230377 1230377 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192588.1 samtools variation 1235127 1235127 . . . alleles " T C"; frequencies " 0.525139664804469 0.474860335195531"; depth 179 ; unknown ; N/A GL192588.1 samtools variation 1240630 1240630 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192588.1 samtools variation 1241127 1241127 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192588.1 samtools variation 1241364 1241364 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192588.1 samtools variation 1243634 1243634 . . . alleles " G A"; frequencies " 0.593558282208589 0.406441717791411"; depth 652 ; known ; synonymous GL192588.1 samtools variation 1248275 1248275 . . . alleles " C T"; frequencies " 0.76056338028169 0.23943661971831"; depth 71 ; known ; N/A GL192588.1 samtools variation 1251364 1251364 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 34 ; unknown ; N/A GL192588.1 samtools variation 1257405 1257405 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 54 ; unknown ; N/A GL192588.1 samtools variation 1264926 1264926 . . . alleles " T A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192588.1 samtools variation 1272828 1272828 . . . alleles " C T"; frequencies " 0.745454545454545 0.254545454545455"; depth 55 ; known ; N/A GL192588.1 samtools variation 1284675 1284675 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 30 ; known ; N/A GL192588.1 samtools variation 1285706 1285706 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 65 ; known ; N/A GL192588.1 samtools variation 1285842 1285842 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192588.1 samtools variation 1359839 1359839 . . . alleles " T C"; frequencies " 0.795918367346939 0.204081632653061"; depth 49 ; unknown ; N/A GL192588.1 samtools variation 1428855 1428855 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; synonymous GL192588.1 samtools variation 1583737 1583737 . . . alleles " A G"; frequencies " 0.472049689440994 0.527950310559006"; depth 161 ; known ; N/A GL192588.1 samtools variation 1647617 1647617 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192588.1 samtools variation 1653799 1653799 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192588.1 samtools variation 1658291 1658291 . . . alleles " A C"; frequencies " 0.434782608695652 0.565217391304348"; depth 69 ; known ; N/A GL192589.1 samtools variation 99555 99555 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; synonymous GL192589.1 samtools variation 511588 511588 . . . alleles " T C"; frequencies " 0.566666666666667 0.433333333333333"; depth 120 ; unknown ; N/A GL192589.1 samtools variation 512285 512285 . . . alleles " G T"; frequencies " 0.305555555555556 0.694444444444444"; depth 108 ; unknown ; N/A GL192589.1 samtools variation 523866 523866 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 80 ; unknown ; synonymous GL192589.1 samtools variation 599811 599811 . . . alleles " C T"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; unknown ; synonymous GL192589.1 samtools variation 677657 677657 . . . alleles " A G"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; N/A GL192589.1 samtools variation 678026 678026 . . . alleles " C G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192589.1 samtools variation 686484 686484 . . . alleles " C A"; frequencies " 0.708333333333333 0.291666666666667"; depth 96 ; unknown ; N/A GL192589.1 samtools variation 687633 687633 . . . alleles " C G"; frequencies " 0.45 0.55"; depth 100 ; unknown ; N/A GL192589.1 samtools variation 688839 688839 . . . alleles " A C"; frequencies " 0.465116279069767 0.534883720930233"; depth 129 ; unknown ; N/A GL192589.1 samtools variation 689732 689732 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 104 ; unknown ; N/A GL192589.1 samtools variation 691464 691464 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192589.1 samtools variation 734115 734115 . . . alleles " T C"; frequencies " 0.474576271186441 0.525423728813559"; depth 59 ; unknown ; N/A GL192589.1 samtools variation 734129 734129 . . . alleles " A T"; frequencies " 0.680851063829787 0.319148936170213"; depth 47 ; unknown ; N/A GL192590.1 samtools variation 699000 699000 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192590.1 samtools variation 1212641 1212641 . . . alleles " T C"; frequencies " 0.716981132075472 0.283018867924528"; depth 53 ; unknown ; N/A GL192590.1 samtools variation 1212872 1212872 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 40 ; unknown ; N/A GL192590.1 samtools variation 1215387 1215387 . . . alleles " C T"; frequencies " 0.713375796178344 0.286624203821656"; depth 157 ; unknown ; N/A GL192590.1 samtools variation 1667429 1667429 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192590.1 samtools variation 1667490 1667490 . . . alleles " C T"; frequencies " 0.481481481481481 0.518518518518518"; depth 54 ; unknown ; N/A GL192590.1 samtools variation 1667509 1667509 . . . alleles " G A"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; unknown ; N/A GL192590.1 samtools variation 1667711 1667711 . . . alleles " G T"; frequencies " 0.444444444444444 0.555555555555556"; depth 54 ; unknown ; N/A GL192590.1 samtools variation 1667839 1667839 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 35 ; unknown ; N/A GL192591.1 samtools variation 161694 161694 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192591.1 samtools variation 231320 231320 . . . alleles " C T"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; unknown ; N/A GL192591.1 samtools variation 236551 236551 . . . alleles " C T"; frequencies " 0.623529411764706 0.376470588235294"; depth 85 ; known ; N/A GL192591.1 samtools variation 239196 239196 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192591.1 samtools variation 251727 251727 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192591.1 samtools variation 255939 255939 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192591.1 samtools variation 492636 492636 . . . alleles " C T"; frequencies " 0.716216216216216 0.283783783783784"; depth 74 ; unknown ; N/A GL192591.1 samtools variation 1064961 1064961 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192591.1 samtools variation 1065389 1065389 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192591.1 samtools variation 1066025 1066025 . . . alleles " A G"; frequencies " 0.446428571428571 0.553571428571429"; depth 56 ; unknown ; N/A GL192591.1 samtools variation 1066366 1066366 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192591.1 samtools variation 1068564 1068564 . . . alleles " C T"; frequencies " 0.441441441441441 0.558558558558559"; depth 111 ; known ; N/A GL192591.1 samtools variation 1070139 1070139 . . . alleles " C T"; frequencies " 0.46875 0.53125"; depth 32 ; known ; N/A GL192591.1 samtools variation 1070212 1070212 . . . alleles " C A"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; known ; N/A GL192591.1 samtools variation 1070270 1070270 . . . alleles " T C"; frequencies " 0.594594594594595 0.405405405405405"; depth 37 ; known ; N/A GL192591.1 samtools variation 1075005 1075005 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192592.1 samtools variation 13409 13409 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192592.1 samtools variation 102126 102126 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; synonymous GL192592.1 samtools variation 284213 284213 . . . alleles " G A"; frequencies " 0.232876712328767 0.767123287671233"; depth 73 ; known ; N/A GL192592.1 samtools variation 284543 284543 . . . alleles " A G"; frequencies " 0.763636363636364 0.236363636363636"; depth 55 ; unknown ; synonymous GL192592.1 samtools variation 284659 284659 . . . alleles " T C"; frequencies " 0.757575757575758 0.242424242424242"; depth 99 ; known ; non-synonymous GL192592.1 samtools variation 713581 713581 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 48 ; unknown ; N/A GL192592.1 samtools variation 716563 716563 . . . alleles " T G"; frequencies " 0.376623376623377 0.623376623376623"; depth 154 ; unknown ; N/A GL192592.1 samtools variation 717031 717031 . . . alleles " A G"; frequencies " 0.358490566037736 0.641509433962264"; depth 53 ; unknown ; N/A GL192592.1 samtools variation 717165 717165 . . . alleles " C T"; frequencies " 0.798165137614679 0.201834862385321"; depth 109 ; unknown ; synonymous GL192592.1 samtools variation 729990 729990 . . . alleles " T A"; frequencies " 0.426829268292683 0.573170731707317"; depth 82 ; unknown ; non-synonymous GL192592.1 samtools variation 1818683 1818683 . . . alleles " C T"; frequencies " 0.537190082644628 0.462809917355372"; depth 121 ; known ; N/A GL192592.1 samtools variation 1847004 1847004 . . . alleles " A G"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL192592.1 samtools variation 1848170 1848170 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 63 ; unknown ; N/A GL192592.1 samtools variation 1850050 1850050 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 30 ; known ; N/A GL192592.1 samtools variation 1853511 1853511 . . . alleles " T C"; frequencies " 0.737634408602151 0.262365591397849"; depth 465 ; known ; N/A GL192592.1 samtools variation 1854119 1854119 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 84 ; known ; N/A GL192592.1 samtools variation 1856704 1856704 . . . alleles " G A"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL192592.1 samtools variation 1858874 1858874 . . . alleles " T C"; frequencies " 0.768867924528302 0.231132075471698"; depth 212 ; known ; non-synonymous GL192592.1 samtools variation 1864799 1864799 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192592.1 samtools variation 1894591 1894591 . . . alleles " T C"; frequencies " 0.491228070175439 0.508771929824561"; depth 57 ; unknown ; synonymous GL192593.1 samtools variation 424088 424088 . . . alleles " G A"; frequencies " 0.673913043478261 0.326086956521739"; depth 46 ; unknown ; N/A GL192593.1 samtools variation 436215 436215 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; synonymous GL192593.1 samtools variation 436242 436242 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 22 ; known ; synonymous GL192593.1 samtools variation 512377 512377 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; non-synonymous GL192593.1 samtools variation 702353 702353 . . . alleles " C A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192593.1 samtools variation 805271 805271 . . . alleles " A T"; frequencies " 0.795918367346939 0.204081632653061"; depth 49 ; known ; synonymous GL192593.1 samtools variation 835030 835030 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL192593.1 samtools variation 838595 838595 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192593.1 samtools variation 839999 839999 . . . alleles " A G"; frequencies " 0.67741935483871 0.32258064516129"; depth 93 ; unknown ; N/A GL192593.1 samtools variation 840583 840583 . . . alleles " C A"; frequencies " 0.552238805970149 0.447761194029851"; depth 67 ; unknown ; non-synonymous GL192593.1 samtools variation 843634 843634 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192593.1 samtools variation 846055 846055 . . . alleles " A G"; frequencies " 0.366666666666667 0.633333333333333"; depth 60 ; unknown ; synonymous GL192593.1 samtools variation 848996 848996 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192593.1 samtools variation 854483 854483 . . . alleles " A G"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; unknown ; synonymous GL192593.1 samtools variation 854507 854507 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 34 ; unknown ; synonymous GL192593.1 samtools variation 902431 902431 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192593.1 samtools variation 902449 902449 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192593.1 samtools variation 932425 932425 . . . alleles " A G"; frequencies " 0.721951219512195 0.278048780487805"; depth 205 ; unknown ; synonymous GL192593.1 samtools variation 942266 942266 . . . alleles " T A"; frequencies " 0.453333333333333 0.546666666666667"; depth 150 ; known ; synonymous GL192593.1 samtools variation 946837 946837 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; known ; N/A GL192593.1 samtools variation 979619 979619 . . . alleles " A C"; frequencies " 0.317307692307692 0.682692307692308"; depth 104 ; known ; N/A GL192593.1 samtools variation 979992 979992 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192593.1 samtools variation 1102073 1102073 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; known ; synonymous GL192593.1 samtools variation 1119389 1119389 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 24 ; known ; N/A GL192593.1 samtools variation 1136191 1136191 . . . alleles " A G"; frequencies " 0.726495726495726 0.273504273504274"; depth 117 ; unknown ; synonymous GL192593.1 samtools variation 1346675 1346675 . . . alleles " A G"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; known ; N/A GL192593.1 samtools variation 1347310 1347310 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; N/A GL192593.1 samtools variation 1347660 1347660 . . . alleles " C A"; frequencies " 0.292452830188679 0.707547169811321"; depth 106 ; known ; N/A GL192593.1 samtools variation 1365477 1365477 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192593.1 samtools variation 1492267 1492267 . . . alleles " A T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192593.1 samtools variation 1501706 1501706 . . . alleles " A T"; frequencies " 0.767441860465116 0.232558139534884"; depth 86 ; unknown ; N/A GL192593.1 samtools variation 1503575 1503575 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192593.1 samtools variation 1503848 1503848 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192593.1 samtools variation 1506207 1506207 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192593.1 samtools variation 1551366 1551366 . . . alleles " T C"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192593.1 samtools variation 1552206 1552206 . . . alleles " C T"; frequencies " 0.716738197424893 0.283261802575107"; depth 233 ; unknown ; N/A GL192593.1 samtools variation 1555415 1555415 . . . alleles " C T"; frequencies " 0.481481481481481 0.518518518518518"; depth 54 ; unknown ; N/A GL192593.1 samtools variation 1556249 1556249 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192593.1 samtools variation 1556984 1556984 . . . alleles " T A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192593.1 samtools variation 1557933 1557933 . . . alleles " C T"; frequencies " 0.488372093023256 0.511627906976744"; depth 86 ; unknown ; N/A GL192593.1 samtools variation 1558072 1558072 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192593.1 samtools variation 1558982 1558982 . . . alleles " T C"; frequencies " 0.21875 0.78125"; depth 32 ; unknown ; N/A GL192593.1 samtools variation 1563757 1563757 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192593.1 samtools variation 1687085 1687085 . . . alleles " T C"; frequencies " 0.659090909090909 0.340909090909091"; depth 88 ; unknown ; N/A GL192593.1 samtools variation 1687418 1687418 . . . alleles " C T"; frequencies " 0.683333333333333 0.316666666666667"; depth 120 ; unknown ; N/A GL192593.1 samtools variation 1701775 1701775 . . . alleles " C G"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; synonymous GL192593.1 samtools variation 1786786 1786786 . . . alleles " A G"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL192593.1 samtools variation 1789446 1789446 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192593.1 samtools variation 1823515 1823515 . . . alleles " A C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192593.1 samtools variation 1823517 1823517 . . . alleles " C G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192593.1 samtools variation 1823527 1823527 . . . alleles " T G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192593.1 samtools variation 1849851 1849851 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192593.1 samtools variation 1859381 1859381 . . . alleles " T A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL192593.1 samtools variation 1861874 1861874 . . . alleles " C A"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL192593.1 samtools variation 1874731 1874731 . . . alleles " T G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192593.1 samtools variation 1890693 1890693 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 56 ; unknown ; N/A GL192593.1 samtools variation 1894928 1894928 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192594.1 samtools variation 1369187 1369187 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 34 ; known ; N/A GL192595.1 samtools variation 28842 28842 . . . alleles " T C"; frequencies " 0.630648330058939 0.369351669941061"; depth 1527 ; unknown ; N/A GL192595.1 samtools variation 30723 30723 . . . alleles " C G"; frequencies " 0.770290964777948 0.229709035222052"; depth 653 ; known ; N/A GL192595.1 samtools variation 31155 31155 . . . alleles " C T"; frequencies " 0.201704545454545 0.798295454545455"; depth 352 ; known ; N/A GL192595.1 samtools variation 67619 67619 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192595.1 samtools variation 75003 75003 . . . alleles " G A"; frequencies " 0.726114649681529 0.273885350318471"; depth 157 ; unknown ; N/A GL192595.1 samtools variation 349772 349772 . . . alleles " C A"; frequencies " 0.605263157894737 0.394736842105263"; depth 152 ; unknown ; synonymous GL192595.1 samtools variation 360106 360106 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192595.1 samtools variation 361654 361654 . . . alleles " A G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192595.1 samtools variation 368058 368058 . . . alleles " G T"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL192595.1 samtools variation 368065 368065 . . . alleles " A C"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; unknown ; N/A GL192595.1 samtools variation 368456 368456 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192595.1 samtools variation 387115 387115 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192595.1 samtools variation 392855 392855 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL192595.1 samtools variation 397942 397942 . . . alleles " T C"; frequencies " 0.50597609561753 0.49402390438247"; depth 251 ; known ; N/A GL192595.1 samtools variation 398016 398016 . . . alleles " A G"; frequencies " 0.546875 0.453125"; depth 320 ; known ; N/A GL192595.1 samtools variation 398495 398495 . . . alleles " C T"; frequencies " 0.746438746438746 0.253561253561254"; depth 351 ; unknown ; N/A GL192595.1 samtools variation 398762 398762 . . . alleles " G A"; frequencies " 0.752577319587629 0.247422680412371"; depth 97 ; known ; N/A GL192595.1 samtools variation 542747 542747 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192595.1 samtools variation 543252 543252 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192595.1 samtools variation 544783 544783 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192595.1 samtools variation 544947 544947 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192595.1 samtools variation 559950 559950 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192595.1 samtools variation 561380 561380 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192595.1 samtools variation 563244 563244 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192595.1 samtools variation 571955 571955 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192595.1 samtools variation 573470 573470 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192595.1 samtools variation 574950 574950 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192595.1 samtools variation 574951 574951 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192595.1 samtools variation 576120 576120 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192595.1 samtools variation 576559 576559 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192595.1 samtools variation 577549 577549 . . . alleles " G C"; frequencies " 0.788296860133206 0.207421503330162"; depth 2102 ; unknown ; synonymous GL192595.1 samtools variation 577703 577703 . . . alleles " G C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192595.1 samtools variation 578150 578150 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192595.1 samtools variation 578164 578164 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192595.1 samtools variation 579061 579061 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192595.1 samtools variation 581946 581946 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 75 ; unknown ; N/A GL192595.1 samtools variation 582305 582305 . . . alleles " T C"; frequencies " 0.306122448979592 0.693877551020408"; depth 98 ; unknown ; N/A GL192595.1 samtools variation 582832 582832 . . . alleles " T C"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL192595.1 samtools variation 582941 582941 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192595.1 samtools variation 583654 583654 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 70 ; unknown ; N/A GL192595.1 samtools variation 584847 584847 . . . alleles " C T"; frequencies " 0.786031042128603 0.213968957871397"; depth 902 ; unknown ; N/A GL192595.1 samtools variation 585610 585610 . . . alleles " G A"; frequencies " 0.727786752827141 0.272213247172859"; depth 1238 ; known ; N/A GL192595.1 samtools variation 585785 585785 . . . alleles " A G"; frequencies " 0.764912280701754 0.235087719298246"; depth 855 ; unknown ; N/A GL192595.1 samtools variation 585932 585932 . . . alleles " C A"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL192595.1 samtools variation 884090 884090 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192595.1 samtools variation 891506 891506 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192595.1 samtools variation 896637 896637 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192595.1 samtools variation 896752 896752 . . . alleles " T G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192595.1 samtools variation 1005868 1005868 . . . alleles " G T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192595.1 samtools variation 1035258 1035258 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192595.1 samtools variation 1035744 1035744 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 45 ; known ; N/A GL192595.1 samtools variation 1036423 1036423 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 25 ; known ; N/A GL192595.1 samtools variation 1036943 1036943 . . . alleles " A G"; frequencies " 0.530612244897959 0.469387755102041"; depth 98 ; unknown ; N/A GL192595.1 samtools variation 1036956 1036956 . . . alleles " C T"; frequencies " 0.574257425742574 0.425742574257426"; depth 101 ; unknown ; N/A GL192595.1 samtools variation 1040312 1040312 . . . alleles " A G"; frequencies " 0.227848101265823 0.772151898734177"; depth 79 ; known ; N/A GL192595.1 samtools variation 1041915 1041915 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 42 ; known ; N/A GL192595.1 samtools variation 1049077 1049077 . . . alleles " T C"; frequencies " 0.346938775510204 0.653061224489796"; depth 49 ; known ; N/A GL192595.1 samtools variation 1051906 1051906 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 33 ; known ; N/A GL192595.1 samtools variation 1052386 1052386 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 25 ; known ; N/A GL192595.1 samtools variation 1055386 1055386 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; known ; N/A GL192595.1 samtools variation 1056826 1056826 . . . alleles " C T"; frequencies " 0.331658291457286 0.668341708542714"; depth 199 ; known ; N/A GL192595.1 samtools variation 1057702 1057702 . . . alleles " C T"; frequencies " 0.614285714285714 0.385714285714286"; depth 70 ; known ; N/A GL192595.1 samtools variation 1059568 1059568 . . . alleles " G A"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; known ; N/A GL192595.1 samtools variation 1060593 1060593 . . . alleles " A T"; frequencies " 0.292517006802721 0.707482993197279"; depth 441 ; known ; non-synonymous GL192595.1 samtools variation 1060648 1060648 . . . alleles " T C"; frequencies " 0.798711755233494 0.201288244766506"; depth 621 ; known ; synonymous GL192595.1 samtools variation 1060668 1060668 . . . alleles " A G"; frequencies " 0.751760563380282 0.248239436619718"; depth 568 ; known ; N/A GL192595.1 samtools variation 1060941 1060941 . . . alleles " G A"; frequencies " 0.313953488372093 0.686046511627907"; depth 86 ; known ; N/A GL192595.1 samtools variation 1061069 1061069 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 65 ; known ; N/A GL192595.1 samtools variation 1061905 1061905 . . . alleles " C T"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL192595.1 samtools variation 1061934 1061934 . . . alleles " T C"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL192595.1 samtools variation 1062002 1062002 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; known ; N/A GL192595.1 samtools variation 1063815 1063815 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192595.1 samtools variation 1067297 1067297 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192595.1 samtools variation 1072419 1072419 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192595.1 samtools variation 1079575 1079575 . . . alleles " G A"; frequencies " 0.703225806451613 0.296774193548387"; depth 155 ; unknown ; N/A GL192595.1 samtools variation 1109960 1109960 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL192595.1 samtools variation 1109961 1109961 . . . alleles " T A"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; N/A GL192595.1 samtools variation 1124377 1124377 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192595.1 samtools variation 1124380 1124380 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192595.1 samtools variation 1135822 1135822 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; synonymous GL192595.1 samtools variation 1137181 1137181 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192595.1 samtools variation 1202565 1202565 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192595.1 samtools variation 1233593 1233593 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192595.1 samtools variation 1241987 1241987 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL192595.1 samtools variation 1242792 1242792 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192595.1 samtools variation 1243279 1243279 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; unknown ; N/A GL192595.1 samtools variation 1243469 1243469 . . . alleles " T G"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL192595.1 samtools variation 1243546 1243546 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 45 ; unknown ; N/A GL192595.1 samtools variation 1244281 1244281 . . . alleles " C T"; frequencies " 0.313953488372093 0.686046511627907"; depth 86 ; unknown ; N/A GL192595.1 samtools variation 1245255 1245255 . . . alleles " G A"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; unknown ; N/A GL192595.1 samtools variation 1245839 1245839 . . . alleles " T A"; frequencies " 0.754237288135593 0.245762711864407"; depth 118 ; unknown ; N/A GL192595.1 samtools variation 1245840 1245840 . . . alleles " C A"; frequencies " 0.768595041322314 0.231404958677686"; depth 121 ; unknown ; N/A GL192595.1 samtools variation 1246027 1246027 . . . alleles " G A"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; known ; N/A GL192595.1 samtools variation 1256626 1256626 . . . alleles " T C"; frequencies " 0.297297297297297 0.702702702702703"; depth 37 ; known ; N/A GL192595.1 samtools variation 1259427 1259427 . . . alleles " C T"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192595.1 samtools variation 1259655 1259655 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 51 ; known ; N/A GL192595.1 samtools variation 1261800 1261800 . . . alleles " T C"; frequencies " 0.320754716981132 0.679245283018868"; depth 53 ; unknown ; N/A GL192595.1 samtools variation 1267442 1267442 . . . alleles " C T"; frequencies " 0.382978723404255 0.617021276595745"; depth 47 ; unknown ; N/A GL192595.1 samtools variation 1273279 1273279 . . . alleles " G C"; frequencies " 0.28125 0.71875"; depth 32 ; unknown ; N/A GL192595.1 samtools variation 1273291 1273291 . . . alleles " A C"; frequencies " 0.3125 0.6875"; depth 32 ; unknown ; N/A GL192595.1 samtools variation 1393522 1393522 . . . alleles " C A"; frequencies " 0.774038461538462 0.225961538461538"; depth 208 ; unknown ; N/A GL192595.1 samtools variation 1393574 1393574 . . . alleles " A G"; frequencies " 0.786885245901639 0.207650273224044"; depth 183 ; unknown ; N/A GL192595.1 samtools variation 1394478 1394478 . . . alleles " G A"; frequencies " 0.797697368421053 0.202302631578947"; depth 608 ; unknown ; N/A GL192595.1 samtools variation 1394814 1394814 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192595.1 samtools variation 1394876 1394876 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192595.1 samtools variation 1395566 1395566 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL192595.1 samtools variation 1397545 1397545 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 32 ; unknown ; N/A GL192595.1 samtools variation 1397590 1397590 . . . alleles " C T"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192595.1 samtools variation 1398395 1398395 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192595.1 samtools variation 1403609 1403609 . . . alleles " A C"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL192595.1 samtools variation 1403613 1403613 . . . alleles " C G"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192595.1 samtools variation 1403669 1403669 . . . alleles " C G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192595.1 samtools variation 1411144 1411144 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192595.1 samtools variation 1417661 1417661 . . . alleles " T C"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192595.1 samtools variation 1417662 1417662 . . . alleles " G A"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192595.1 samtools variation 1417881 1417881 . . . alleles " C T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192595.1 samtools variation 1420041 1420041 . . . alleles " G A"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; unknown ; N/A GL192595.1 samtools variation 1424217 1424217 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192595.1 samtools variation 1426743 1426743 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192595.1 samtools variation 1429862 1429862 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL192595.1 samtools variation 1431919 1431919 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; N/A GL192595.1 samtools variation 1434366 1434366 . . . alleles " T C"; frequencies " 0.326923076923077 0.673076923076923"; depth 52 ; unknown ; N/A GL192595.1 samtools variation 1468601 1468601 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192595.1 samtools variation 1488707 1488707 . . . alleles " C A"; frequencies " 0.797101449275362 0.202898550724638"; depth 69 ; unknown ; non-synonymous GL192595.1 samtools variation 1489739 1489739 . . . alleles " A C"; frequencies " 0.779069767441861 0.22093023255814"; depth 86 ; unknown ; synonymous GL192595.1 samtools variation 1489784 1489784 . . . alleles " G A"; frequencies " 0.514851485148515 0.485148514851485"; depth 101 ; unknown ; synonymous GL192595.1 samtools variation 1490484 1490484 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192595.1 samtools variation 1490898 1490898 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192595.1 samtools variation 1491748 1491748 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192595.1 samtools variation 1492564 1492564 . . . alleles " C A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; non-synonymous GL192595.1 samtools variation 1529006 1529006 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 133 ; unknown ; N/A GL192595.1 samtools variation 1533105 1533105 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192595.1 samtools variation 1533205 1533205 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192595.1 samtools variation 1534958 1534958 . . . alleles " G A"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; N/A GL192595.1 samtools variation 1536563 1536563 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192595.1 samtools variation 1541572 1541572 . . . alleles " C G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192595.1 samtools variation 1568507 1568507 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192595.1 samtools variation 1603386 1603386 . . . alleles " T C"; frequencies " 0.330827067669173 0.669172932330827"; depth 133 ; unknown ; non-synonymous GL192595.1 samtools variation 1603438 1603438 . . . alleles " A G"; frequencies " 0.616666666666667 0.383333333333333"; depth 120 ; unknown ; synonymous GL192595.1 samtools variation 1605444 1605444 . . . alleles " C T"; frequencies " 0.256410256410256 0.743589743589744"; depth 39 ; unknown ; N/A GL192595.1 samtools variation 1605845 1605845 . . . alleles " C T"; frequencies " 0.211538461538462 0.788461538461538"; depth 52 ; unknown ; N/A GL192595.1 samtools variation 1605927 1605927 . . . alleles " C T"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL192595.1 samtools variation 1619965 1619965 . . . alleles " T G"; frequencies " 0.280898876404494 0.719101123595506"; depth 178 ; unknown ; synonymous GL192595.1 samtools variation 1623336 1623336 . . . alleles " C T"; frequencies " 0.382716049382716 0.617283950617284"; depth 81 ; unknown ; synonymous GL192595.1 samtools variation 1623444 1623444 . . . alleles " C T"; frequencies " 0.288888888888889 0.711111111111111"; depth 225 ; unknown ; synonymous GL192595.1 samtools variation 1623501 1623501 . . . alleles " A G"; frequencies " 0.303738317757009 0.696261682242991"; depth 214 ; unknown ; synonymous GL192595.1 samtools variation 1677238 1677238 . . . alleles " G T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192595.1 samtools variation 1677274 1677274 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192595.1 samtools variation 1677421 1677421 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; synonymous GL192595.1 samtools variation 1677448 1677448 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; synonymous GL192595.1 samtools variation 1678956 1678956 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 70 ; unknown ; synonymous GL192595.1 samtools variation 1681923 1681923 . . . alleles " C T"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; synonymous GL192595.1 samtools variation 1683178 1683178 . . . alleles " C T"; frequencies " 0.698630136986301 0.301369863013699"; depth 73 ; unknown ; non-synonymous GL192596.1 samtools variation 753370 753370 . . . alleles " C G"; frequencies " 0.647058823529412 0.352941176470588"; depth 51 ; unknown ; N/A GL192596.1 samtools variation 756576 756576 . . . alleles " T C"; frequencies " 0.798076923076923 0.201923076923077"; depth 104 ; known ; N/A GL192596.1 samtools variation 843037 843037 . . . alleles " T C"; frequencies " 0.794736842105263 0.205263157894737"; depth 570 ; unknown ; N/A GL192596.1 samtools variation 843099 843099 . . . alleles " G A"; frequencies " 0.784522003034901 0.215477996965099"; depth 659 ; unknown ; N/A GL192596.1 samtools variation 929212 929212 . . . alleles " C T"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL192596.1 samtools variation 929460 929460 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192596.1 samtools variation 935672 935672 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192596.1 samtools variation 939944 939944 . . . alleles " G A"; frequencies " 0.676470588235294 0.323529411764706"; depth 102 ; unknown ; synonymous GL192596.1 samtools variation 1058888 1058888 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192596.1 samtools variation 1061092 1061092 . . . alleles " G A"; frequencies " 0.448275862068966 0.551724137931034"; depth 58 ; unknown ; non-synonymous GL192596.1 samtools variation 1061147 1061147 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 51 ; known ; synonymous GL192596.1 samtools variation 1061185 1061185 . . . alleles " C A"; frequencies " 0.372549019607843 0.627450980392157"; depth 51 ; known ; non-synonymous GL192596.1 samtools variation 1061969 1061969 . . . alleles " A G"; frequencies " 0.52 0.48"; depth 50 ; known ; synonymous GL192596.1 samtools variation 1062410 1062410 . . . alleles " G A"; frequencies " 0.59375 0.40625"; depth 64 ; known ; synonymous GL192596.1 samtools variation 1062723 1062723 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL192596.1 samtools variation 1062889 1062889 . . . alleles " G A"; frequencies " 0.325581395348837 0.674418604651163"; depth 43 ; known ; N/A GL192596.1 samtools variation 1063171 1063171 . . . alleles " A G"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; known ; N/A GL192596.1 samtools variation 1063476 1063476 . . . alleles " G C"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192596.1 samtools variation 1102622 1102622 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192596.1 samtools variation 1110034 1110034 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 46 ; known ; synonymous GL192596.1 samtools variation 1113659 1113659 . . . alleles " G A"; frequencies " 0.795698924731183 0.204301075268817"; depth 93 ; unknown ; N/A GL192596.1 samtools variation 1114672 1114672 . . . alleles " A G"; frequencies " 0.652941176470588 0.347058823529412"; depth 170 ; unknown ; N/A GL192596.1 samtools variation 1215524 1215524 . . . alleles " A T"; frequencies " 0.773584905660377 0.226415094339623"; depth 53 ; unknown ; N/A GL192596.1 samtools variation 1250749 1250749 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192596.1 samtools variation 1250968 1250968 . . . alleles " G A"; frequencies " 0.596491228070175 0.403508771929825"; depth 57 ; unknown ; N/A GL192596.1 samtools variation 1251138 1251138 . . . alleles " T C"; frequencies " 0.365217391304348 0.634782608695652"; depth 115 ; unknown ; N/A GL192596.1 samtools variation 1252173 1252173 . . . alleles " G A"; frequencies " 0.575221238938053 0.424778761061947"; depth 113 ; unknown ; N/A GL192596.1 samtools variation 1252357 1252357 . . . alleles " G A"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL192596.1 samtools variation 1252831 1252831 . . . alleles " A G"; frequencies " 0.724137931034483 0.275862068965517"; depth 87 ; unknown ; synonymous GL192596.1 samtools variation 1291717 1291717 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192596.1 samtools variation 1606331 1606331 . . . alleles " T C"; frequencies " 0.787128712871287 0.212871287128713"; depth 202 ; unknown ; synonymous GL192596.1 samtools variation 1623675 1623675 . . . alleles " C T"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; unknown ; N/A GL192596.1 samtools variation 1657497 1657497 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 36 ; unknown ; N/A GL192596.1 samtools variation 1699773 1699773 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192596.1 samtools variation 1814985 1814985 . . . alleles " G A"; frequencies " 0.347107438016529 0.652892561983471"; depth 242 ; unknown ; synonymous GL192596.1 samtools variation 1900853 1900853 . . . alleles " T C"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; known ; N/A GL192596.1 samtools variation 1901108 1901108 . . . alleles " A G"; frequencies " 0.605493133583021 0.394506866416979"; depth 801 ; unknown ; N/A GL192596.1 samtools variation 1903317 1903317 . . . alleles " C A"; frequencies " 0.777777777777778 0.222222222222222"; depth 135 ; unknown ; N/A GL192596.1 samtools variation 1904006 1904006 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192596.1 samtools variation 1904027 1904027 . . . alleles " C A"; frequencies " 0.346938775510204 0.653061224489796"; depth 49 ; unknown ; N/A GL192596.1 samtools variation 1904028 1904028 . . . alleles " C G"; frequencies " 0.36 0.64"; depth 50 ; unknown ; N/A GL192596.1 samtools variation 1905096 1905096 . . . alleles " C G"; frequencies " 0.204545454545455 0.795454545454545"; depth 44 ; known ; N/A GL192596.1 samtools variation 1905192 1905192 . . . alleles " C T"; frequencies " 0.247956403269755 0.752043596730245"; depth 367 ; known ; non-synonymous GL192596.1 samtools variation 1905325 1905325 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192597.1 samtools variation 137838 137838 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192597.1 samtools variation 476845 476845 . . . alleles " T C"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL192597.1 samtools variation 477371 477371 . . . alleles " T G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192597.1 samtools variation 477728 477728 . . . alleles " A G"; frequencies " 0.30952380952381 0.69047619047619"; depth 84 ; known ; N/A GL192597.1 samtools variation 478559 478559 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; known ; N/A GL192597.1 samtools variation 478720 478720 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192597.1 samtools variation 480148 480148 . . . alleles " C T"; frequencies " 0.696428571428571 0.303571428571429"; depth 56 ; known ; N/A GL192597.1 samtools variation 480248 480248 . . . alleles " G A"; frequencies " 0.282051282051282 0.717948717948718"; depth 39 ; known ; N/A GL192597.1 samtools variation 481304 481304 . . . alleles " A G"; frequencies " 0.740540540540541 0.259459459459459"; depth 185 ; known ; N/A GL192597.1 samtools variation 481673 481673 . . . alleles " A C"; frequencies " 0.263440860215054 0.736559139784946"; depth 186 ; known ; N/A GL192597.1 samtools variation 481787 481787 . . . alleles " T C"; frequencies " 0.262172284644195 0.737827715355805"; depth 267 ; known ; N/A GL192597.1 samtools variation 482141 482141 . . . alleles " A G"; frequencies " 0.698795180722892 0.301204819277108"; depth 332 ; known ; N/A GL192597.1 samtools variation 482186 482186 . . . alleles " C T"; frequencies " 0.310679611650485 0.689320388349515"; depth 103 ; known ; N/A GL192597.1 samtools variation 482814 482814 . . . alleles " G A"; frequencies " 0.664835164835165 0.335164835164835"; depth 182 ; known ; N/A GL192597.1 samtools variation 483196 483196 . . . alleles " C T"; frequencies " 0.283783783783784 0.716216216216216"; depth 222 ; known ; N/A GL192597.1 samtools variation 483768 483768 . . . alleles " A C"; frequencies " 0.641975308641975 0.358024691358025"; depth 81 ; known ; N/A GL192597.1 samtools variation 483802 483802 . . . alleles " G A"; frequencies " 0.759398496240602 0.240601503759398"; depth 133 ; known ; N/A GL192597.1 samtools variation 483990 483990 . . . alleles " C T"; frequencies " 0.222222222222222 0.777777777777778"; depth 36 ; known ; N/A GL192597.1 samtools variation 484056 484056 . . . alleles " G A"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; known ; N/A GL192597.1 samtools variation 484262 484262 . . . alleles " A G"; frequencies " 0.449275362318841 0.550724637681159"; depth 69 ; known ; N/A GL192597.1 samtools variation 484291 484291 . . . alleles " T A"; frequencies " 0.434782608695652 0.565217391304348"; depth 46 ; known ; N/A GL192597.1 samtools variation 484373 484373 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 40 ; known ; N/A GL192597.1 samtools variation 484420 484420 . . . alleles " C T"; frequencies " 0.231884057971014 0.768115942028985"; depth 69 ; known ; N/A GL192597.1 samtools variation 484514 484514 . . . alleles " A G"; frequencies " 0.706586826347305 0.293413173652695"; depth 167 ; known ; N/A GL192597.1 samtools variation 484709 484709 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; known ; N/A GL192597.1 samtools variation 485923 485923 . . . alleles " A C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192597.1 samtools variation 486125 486125 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192597.1 samtools variation 487370 487370 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192597.1 samtools variation 489180 489180 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192597.1 samtools variation 489248 489248 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL192597.1 samtools variation 489696 489696 . . . alleles " T A"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; N/A GL192597.1 samtools variation 490146 490146 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; known ; N/A GL192597.1 samtools variation 490474 490474 . . . alleles " A T"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192597.1 samtools variation 490914 490914 . . . alleles " T G"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; known ; N/A GL192597.1 samtools variation 490975 490975 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192597.1 samtools variation 490985 490985 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL192597.1 samtools variation 491136 491136 . . . alleles " A G"; frequencies " 0.336 0.664"; depth 125 ; known ; N/A GL192597.1 samtools variation 491262 491262 . . . alleles " C G"; frequencies " 0.277777777777778 0.722222222222222"; depth 36 ; known ; N/A GL192597.1 samtools variation 491337 491337 . . . alleles " T G"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; known ; N/A GL192597.1 samtools variation 493353 493353 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 28 ; known ; N/A GL192597.1 samtools variation 494132 494132 . . . alleles " C T"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL192597.1 samtools variation 494133 494133 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL192597.1 samtools variation 506557 506557 . . . alleles " G A"; frequencies " 0.657142857142857 0.342857142857143"; depth 70 ; unknown ; non-synonymous GL192597.1 samtools variation 510863 510863 . . . alleles " T C"; frequencies " 0.729166666666667 0.270833333333333"; depth 144 ; unknown ; N/A GL192597.1 samtools variation 510865 510865 . . . alleles " T C"; frequencies " 0.73469387755102 0.26530612244898"; depth 147 ; unknown ; N/A GL192597.1 samtools variation 510972 510972 . . . alleles " G A"; frequencies " 0.775193798449612 0.224806201550388"; depth 258 ; unknown ; N/A GL192597.1 samtools variation 514144 514144 . . . alleles " G T"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192597.1 samtools variation 514962 514962 . . . alleles " G T"; frequencies " 0.656716417910448 0.343283582089552"; depth 67 ; unknown ; N/A GL192597.1 samtools variation 533237 533237 . . . alleles " A C"; frequencies " 0.738372093023256 0.261627906976744"; depth 344 ; unknown ; N/A GL192597.1 samtools variation 542897 542897 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192597.1 samtools variation 545863 545863 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192597.1 samtools variation 586118 586118 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192597.1 samtools variation 586794 586794 . . . alleles " T A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192597.1 samtools variation 587218 587218 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 56 ; unknown ; N/A GL192597.1 samtools variation 587346 587346 . . . alleles " A G"; frequencies " 0.581395348837209 0.418604651162791"; depth 43 ; unknown ; N/A GL192597.1 samtools variation 599098 599098 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192597.1 samtools variation 601606 601606 . . . alleles " C T"; frequencies " 0.794520547945205 0.205479452054795"; depth 146 ; unknown ; synonymous GL192597.1 samtools variation 601642 601642 . . . alleles " C T"; frequencies " 0.798319327731092 0.201680672268908"; depth 119 ; unknown ; synonymous GL192597.1 samtools variation 604091 604091 . . . alleles " C T"; frequencies " 0.771929824561403 0.228070175438596"; depth 114 ; unknown ; synonymous GL192597.1 samtools variation 605459 605459 . . . alleles " A G"; frequencies " 0.766233766233766 0.233766233766234"; depth 77 ; unknown ; synonymous GL192597.1 samtools variation 1880020 1880020 . . . alleles " G C"; frequencies " 0.217391304347826 0.782608695652174"; depth 115 ; known ; N/A GL192597.1 samtools variation 1883793 1883793 . . . alleles " T A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192597.1 samtools variation 1888053 1888053 . . . alleles " A C"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; known ; N/A GL192598.1 samtools variation 1015277 1015277 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192598.1 samtools variation 1071948 1071948 . . . alleles " G C"; frequencies " 0.470588235294118 0.470588235294118"; depth 17 ; unknown ; synonymous GL192598.1 samtools variation 1135085 1135085 . . . alleles " C T"; frequencies " 0.373134328358209 0.626865671641791"; depth 67 ; unknown ; synonymous GL192598.1 samtools variation 1151724 1151724 . . . alleles " C T"; frequencies " 0.522727272727273 0.477272727272727"; depth 44 ; unknown ; synonymous GL192598.1 samtools variation 1151973 1151973 . . . alleles " A G"; frequencies " 0.224489795918367 0.775510204081633"; depth 49 ; known ; non-synonymous GL192598.1 samtools variation 1153143 1153143 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 42 ; unknown ; N/A GL192598.1 samtools variation 1153383 1153383 . . . alleles " G A"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL192598.1 samtools variation 1197070 1197070 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; synonymous GL192598.1 samtools variation 1197429 1197429 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; non-synonymous GL192598.1 samtools variation 1198214 1198214 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; non-synonymous GL192598.1 samtools variation 1198293 1198293 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; non-synonymous GL192598.1 samtools variation 1335558 1335558 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; synonymous GL192598.1 samtools variation 1341649 1341649 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192598.1 samtools variation 1345399 1345399 . . . alleles " T A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192598.1 samtools variation 1350173 1350173 . . . alleles " G A"; frequencies " 0.678343949044586 0.321656050955414"; depth 314 ; unknown ; N/A GL192598.1 samtools variation 1351197 1351197 . . . alleles " G A"; frequencies " 0.686868686868687 0.313131313131313"; depth 99 ; unknown ; N/A GL192598.1 samtools variation 1353888 1353888 . . . alleles " A G"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192598.1 samtools variation 1354052 1354052 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192598.1 samtools variation 1354651 1354651 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192598.1 samtools variation 1358775 1358775 . . . alleles " G A"; frequencies " 0.651851851851852 0.348148148148148"; depth 135 ; unknown ; synonymous GL192598.1 samtools variation 1359496 1359496 . . . alleles " G A"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; known ; N/A GL192598.1 samtools variation 1395559 1395559 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192598.1 samtools variation 1399742 1399742 . . . alleles " T C"; frequencies " 0.417218543046358 0.582781456953642"; depth 302 ; known ; synonymous GL192598.1 samtools variation 1402452 1402452 . . . alleles " C G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192598.1 samtools variation 1412333 1412333 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192598.1 samtools variation 1416104 1416104 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192598.1 samtools variation 1416842 1416842 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192598.1 samtools variation 1431395 1431395 . . . alleles " T A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192598.1 samtools variation 1764531 1764531 . . . alleles " C A"; frequencies " 0.760869565217391 0.239130434782609"; depth 92 ; unknown ; N/A GL192598.1 samtools variation 1765052 1765052 . . . alleles " T A"; frequencies " 0.706666666666667 0.293333333333333"; depth 75 ; unknown ; N/A GL192598.1 samtools variation 1765135 1765135 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 156 ; unknown ; N/A GL192599.1 samtools variation 371426 371426 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192599.1 samtools variation 775002 775002 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192600.1 samtools variation 1440583 1440583 . . . alleles " G T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192600.1 samtools variation 1440695 1440695 . . . alleles " G C"; frequencies " 0.456896551724138 0.543103448275862"; depth 116 ; unknown ; N/A GL192600.1 samtools variation 1440778 1440778 . . . alleles " C T"; frequencies " 0.715596330275229 0.284403669724771"; depth 109 ; unknown ; N/A GL192600.1 samtools variation 1442885 1442885 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192600.1 samtools variation 1443738 1443738 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192600.1 samtools variation 1443756 1443756 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; non-synonymous GL192600.1 samtools variation 1458915 1458915 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192600.1 samtools variation 1606147 1606147 . . . alleles " A G"; frequencies " 0.563636363636364 0.436363636363636"; depth 55 ; unknown ; N/A GL192600.1 samtools variation 1606568 1606568 . . . alleles " T C"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; unknown ; N/A GL192600.1 samtools variation 1606629 1606629 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 55 ; unknown ; N/A GL192600.1 samtools variation 1607004 1607004 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; N/A GL192600.1 samtools variation 1607868 1607868 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192600.1 samtools variation 1608685 1608685 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192600.1 samtools variation 1608691 1608691 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192600.1 samtools variation 1610268 1610268 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192600.1 samtools variation 1610326 1610326 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192600.1 samtools variation 1647065 1647065 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; non-synonymous GL192600.1 samtools variation 1697222 1697222 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; synonymous GL192600.1 samtools variation 1713947 1713947 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192602.1 samtools variation 229929 229929 . . . alleles " G C"; frequencies " 0.268292682926829 0.731707317073171"; depth 41 ; unknown ; N/A GL192602.1 samtools variation 231175 231175 . . . alleles " G C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192602.1 samtools variation 239151 239151 . . . alleles " T C"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; unknown ; synonymous GL192602.1 samtools variation 239165 239165 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; unknown ; synonymous GL192602.1 samtools variation 333447 333447 . . . alleles " C T"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; synonymous GL192602.1 samtools variation 529636 529636 . . . alleles " A G"; frequencies " 0.26530612244898 0.73469387755102"; depth 49 ; known ; N/A GL192602.1 samtools variation 530136 530136 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; non-synonymous GL192602.1 samtools variation 531028 531028 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; non-synonymous GL192602.1 samtools variation 531046 531046 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; synonymous GL192602.1 samtools variation 560388 560388 . . . alleles " A G"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; non-synonymous GL192602.1 samtools variation 873860 873860 . . . alleles " G A"; frequencies " 0.752808988764045 0.247191011235955"; depth 89 ; unknown ; synonymous GL192602.1 samtools variation 930461 930461 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192602.1 samtools variation 930898 930898 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192602.1 samtools variation 942191 942191 . . . alleles " T A"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; unknown ; N/A GL192602.1 samtools variation 969086 969086 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192602.1 samtools variation 1006359 1006359 . . . alleles " C G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192603.1 samtools variation 1002545 1002545 . . . alleles " A G"; frequencies " 0.279411764705882 0.720588235294118"; depth 68 ; known ; N/A GL192603.1 samtools variation 1005183 1005183 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 190 ; known ; N/A GL192603.1 samtools variation 1005357 1005357 . . . alleles " G C"; frequencies " 0.776470588235294 0.223529411764706"; depth 85 ; unknown ; N/A GL192603.1 samtools variation 1008593 1008593 . . . alleles " A G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL192603.1 samtools variation 1008613 1008613 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192603.1 samtools variation 1021527 1021527 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192603.1 samtools variation 1032675 1032675 . . . alleles " G A"; frequencies " 0.780898876404494 0.219101123595506"; depth 178 ; known ; non-synonymous GL192603.1 samtools variation 1052003 1052003 . . . alleles " C A"; frequencies " 0.791666666666667 0.201388888888889"; depth 144 ; unknown ; synonymous GL192603.1 samtools variation 1052704 1052704 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192603.1 samtools variation 1131171 1131171 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192603.1 samtools variation 1186823 1186823 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192603.1 samtools variation 1234668 1234668 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192603.1 samtools variation 1283922 1283922 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192603.1 samtools variation 1407781 1407781 . . . alleles " A G"; frequencies " 0.790575916230366 0.209424083769634"; depth 382 ; unknown ; N/A GL192603.1 samtools variation 1419213 1419213 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192603.1 samtools variation 1457234 1457234 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192604.1 samtools variation 786881 786881 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192604.1 samtools variation 1450251 1450251 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; non-synonymous GL192604.1 samtools variation 1530614 1530614 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL192604.1 samtools variation 1594444 1594444 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192604.1 samtools variation 1619912 1619912 . . . alleles " A C"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; N/A GL192604.1 samtools variation 1622932 1622932 . . . alleles " T A"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; known ; N/A GL192604.1 samtools variation 1626042 1626042 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192604.1 samtools variation 1633029 1633029 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192604.1 samtools variation 1645424 1645424 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL192604.1 samtools variation 1763417 1763417 . . . alleles " A G"; frequencies " 0.65546218487395 0.34453781512605"; depth 119 ; unknown ; N/A GL192605.1 samtools variation 2168 2168 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192605.1 samtools variation 2484 2484 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 40 ; unknown ; N/A GL192605.1 samtools variation 3570 3570 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192605.1 samtools variation 3791 3791 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192605.1 samtools variation 3816 3816 . . . alleles " G C"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL192605.1 samtools variation 4033 4033 . . . alleles " A G"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192605.1 samtools variation 4338 4338 . . . alleles " C T"; frequencies " 0.282608695652174 0.717391304347826"; depth 46 ; known ; N/A GL192605.1 samtools variation 6552 6552 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 52 ; known ; non-synonymous GL192605.1 samtools variation 6755 6755 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 66 ; known ; synonymous GL192605.1 samtools variation 6784 6784 . . . alleles " G A"; frequencies " 0.682539682539683 0.317460317460317"; depth 63 ; known ; non-synonymous GL192605.1 samtools variation 7194 7194 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 60 ; known ; non-synonymous GL192605.1 samtools variation 7205 7205 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 60 ; known ; non-synonymous GL192605.1 samtools variation 11067 11067 . . . alleles " A G"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; synonymous GL192605.1 samtools variation 12497 12497 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192605.1 samtools variation 12587 12587 . . . alleles " A C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192605.1 samtools variation 12599 12599 . . . alleles " G T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192605.1 samtools variation 25436 25436 . . . alleles " A G"; frequencies " 0.21875 0.78125"; depth 32 ; known ; synonymous GL192605.1 samtools variation 32527 32527 . . . alleles " T A"; frequencies " 0.55 0.45"; depth 20 ; unknown ; non-synonymous GL192605.1 samtools variation 50728 50728 . . . alleles " G A"; frequencies " 0.673913043478261 0.326086956521739"; depth 46 ; unknown ; N/A GL192605.1 samtools variation 52546 52546 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192605.1 samtools variation 53883 53883 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL192605.1 samtools variation 54173 54173 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192605.1 samtools variation 55247 55247 . . . alleles " C A"; frequencies " 0.551724137931034 0.448275862068966"; depth 58 ; unknown ; N/A GL192605.1 samtools variation 55371 55371 . . . alleles " C T"; frequencies " 0.53448275862069 0.46551724137931"; depth 58 ; unknown ; N/A GL192605.1 samtools variation 73241 73241 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192605.1 samtools variation 225213 225213 . . . alleles " T C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; non-synonymous GL192605.1 samtools variation 228790 228790 . . . alleles " G C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; non-synonymous GL192605.1 samtools variation 229071 229071 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; synonymous GL192605.1 samtools variation 237891 237891 . . . alleles " G A"; frequencies " 0.74 0.26"; depth 50 ; unknown ; non-synonymous GL192605.1 samtools variation 265615 265615 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192605.1 samtools variation 265625 265625 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192605.1 samtools variation 265696 265696 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192605.1 samtools variation 327503 327503 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192605.1 samtools variation 328545 328545 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192605.1 samtools variation 1092344 1092344 . . . alleles " A G"; frequencies " 0.302083333333333 0.697916666666667"; depth 96 ; unknown ; synonymous GL192605.1 samtools variation 1839146 1839146 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192605.1 samtools variation 1841583 1841583 . . . alleles " T A"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; known ; N/A GL192606.1 samtools variation 175702 175702 . . . alleles " T C"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; unknown ; N/A GL192606.1 samtools variation 177218 177218 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 108 ; unknown ; N/A GL192606.1 samtools variation 177727 177727 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192606.1 samtools variation 182622 182622 . . . alleles " G T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192606.1 samtools variation 182640 182640 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192606.1 samtools variation 182684 182684 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192606.1 samtools variation 182736 182736 . . . alleles " A C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192606.1 samtools variation 184841 184841 . . . alleles " G A"; frequencies " 0.660869565217391 0.339130434782609"; depth 115 ; unknown ; synonymous GL192606.1 samtools variation 185351 185351 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192606.1 samtools variation 187682 187682 . . . alleles " C T"; frequencies " 0.46031746031746 0.53968253968254"; depth 126 ; unknown ; non-synonymous GL192606.1 samtools variation 197189 197189 . . . alleles " A G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192606.1 samtools variation 217483 217483 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192606.1 samtools variation 217931 217931 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192606.1 samtools variation 217938 217938 . . . alleles " C G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192606.1 samtools variation 218124 218124 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL192606.1 samtools variation 218721 218721 . . . alleles " C G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192606.1 samtools variation 240549 240549 . . . alleles " A G"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL192607.1 samtools variation 607673 607673 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192607.1 samtools variation 607898 607898 . . . alleles " A G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192607.1 samtools variation 608055 608055 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192607.1 samtools variation 608486 608486 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192607.1 samtools variation 666478 666478 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192607.1 samtools variation 693985 693985 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; N/A GL192607.1 samtools variation 710313 710313 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192607.1 samtools variation 710314 710314 . . . alleles " A C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192607.1 samtools variation 722299 722299 . . . alleles " A G"; frequencies " 0.520661157024793 0.479338842975207"; depth 121 ; unknown ; synonymous GL192607.1 samtools variation 729532 729532 . . . alleles " A T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192607.1 samtools variation 769568 769568 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192607.1 samtools variation 771640 771640 . . . alleles " C T"; frequencies " 0.37984496124031 0.62015503875969"; depth 129 ; known ; non-synonymous GL192607.1 samtools variation 771950 771950 . . . alleles " T C"; frequencies " 0.628571428571429 0.371428571428571"; depth 140 ; known ; synonymous GL192607.1 samtools variation 774891 774891 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192607.1 samtools variation 785148 785148 . . . alleles " A G"; frequencies " 0.381443298969072 0.618556701030928"; depth 97 ; known ; synonymous GL192607.1 samtools variation 790185 790185 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192607.1 samtools variation 804227 804227 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192607.1 samtools variation 804776 804776 . . . alleles " T C"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192607.1 samtools variation 805457 805457 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192607.1 samtools variation 819291 819291 . . . alleles " G A"; frequencies " 0.270833333333333 0.729166666666667"; depth 96 ; unknown ; synonymous GL192607.1 samtools variation 820758 820758 . . . alleles " A C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192607.1 samtools variation 825130 825130 . . . alleles " T C"; frequencies " 0.633165829145729 0.366834170854271"; depth 398 ; unknown ; synonymous GL192607.1 samtools variation 827805 827805 . . . alleles " A T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192607.1 samtools variation 829182 829182 . . . alleles " A G"; frequencies " 0.699186991869919 0.300813008130081"; depth 123 ; unknown ; synonymous GL192607.1 samtools variation 829381 829381 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192607.1 samtools variation 829905 829905 . . . alleles " A G"; frequencies " 0.570048309178744 0.429951690821256"; depth 207 ; unknown ; synonymous GL192607.1 samtools variation 830360 830360 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192607.1 samtools variation 845107 845107 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192607.1 samtools variation 845732 845732 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192607.1 samtools variation 852620 852620 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192607.1 samtools variation 852769 852769 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192607.1 samtools variation 853034 853034 . . . alleles " T G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192607.1 samtools variation 855173 855173 . . . alleles " T G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192607.1 samtools variation 855580 855580 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; unknown ; N/A GL192607.1 samtools variation 855640 855640 . . . alleles " T C"; frequencies " 0.216216216216216 0.783783783783784"; depth 37 ; known ; N/A GL192607.1 samtools variation 856430 856430 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192607.1 samtools variation 1446142 1446142 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192607.1 samtools variation 1464782 1464782 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192607.1 samtools variation 1464812 1464812 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192607.1 samtools variation 1491528 1491528 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192607.1 samtools variation 1493534 1493534 . . . alleles " T C"; frequencies " 0.212967345007099 0.787032654992901"; depth 2113 ; known ; synonymous GL192607.1 samtools variation 1499403 1499403 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192607.1 samtools variation 1499837 1499837 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192607.1 samtools variation 1499845 1499845 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192607.1 samtools variation 1501405 1501405 . . . alleles " G A"; frequencies " 0.67237687366167 0.32762312633833"; depth 934 ; known ; N/A GL192607.1 samtools variation 1516106 1516106 . . . alleles " T C"; frequencies " 0.512820512820513 0.487179487179487"; depth 39 ; unknown ; non-synonymous GL192607.1 samtools variation 1549966 1549966 . . . alleles " T C"; frequencies " 0.25531914893617 0.74468085106383"; depth 47 ; known ; synonymous GL192607.1 samtools variation 1565093 1565093 . . . alleles " G A"; frequencies " 0.492307692307692 0.507692307692308"; depth 65 ; unknown ; N/A GL192607.1 samtools variation 1565317 1565317 . . . alleles " G T"; frequencies " 0.673913043478261 0.326086956521739"; depth 46 ; unknown ; N/A GL192607.1 samtools variation 1565874 1565874 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 63 ; known ; N/A GL192607.1 samtools variation 1566620 1566620 . . . alleles " C G"; frequencies " 0.579831932773109 0.420168067226891"; depth 119 ; unknown ; N/A GL192607.1 samtools variation 1566744 1566744 . . . alleles " C G"; frequencies " 0.557522123893805 0.442477876106195"; depth 113 ; unknown ; N/A GL192607.1 samtools variation 1566829 1566829 . . . alleles " T C"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; unknown ; N/A GL192607.1 samtools variation 1567302 1567302 . . . alleles " A T"; frequencies " 0.305084745762712 0.694915254237288"; depth 59 ; known ; N/A GL192607.1 samtools variation 1567710 1567710 . . . alleles " T C"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; known ; N/A GL192607.1 samtools variation 1568097 1568097 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 33 ; known ; N/A GL192609.1 samtools variation 470204 470204 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192609.1 samtools variation 471755 471755 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; N/A GL192609.1 samtools variation 904311 904311 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 32 ; unknown ; synonymous GL192609.1 samtools variation 1012854 1012854 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; non-synonymous GL192609.1 samtools variation 1114890 1114890 . . . alleles " T A"; frequencies " 0.644736842105263 0.355263157894737"; depth 76 ; unknown ; N/A GL192609.1 samtools variation 1115704 1115704 . . . alleles " G A"; frequencies " 0.56 0.44"; depth 50 ; unknown ; N/A GL192609.1 samtools variation 1118480 1118480 . . . alleles " A G"; frequencies " 0.511363636363636 0.488636363636364"; depth 88 ; unknown ; N/A GL192609.1 samtools variation 1119325 1119325 . . . alleles " G A"; frequencies " 0.617977528089888 0.382022471910112"; depth 89 ; unknown ; N/A GL192609.1 samtools variation 1119346 1119346 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 78 ; unknown ; N/A GL192609.1 samtools variation 1119739 1119739 . . . alleles " T C"; frequencies " 0.314285714285714 0.685714285714286"; depth 70 ; unknown ; N/A GL192609.1 samtools variation 1120515 1120515 . . . alleles " G A"; frequencies " 0.473214285714286 0.526785714285714"; depth 112 ; known ; N/A GL192609.1 samtools variation 1120588 1120588 . . . alleles " G A"; frequencies " 0.387755102040816 0.612244897959184"; depth 49 ; known ; N/A GL192609.1 samtools variation 1121335 1121335 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 42 ; known ; N/A GL192609.1 samtools variation 1121349 1121349 . . . alleles " A G"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; known ; N/A GL192609.1 samtools variation 1121430 1121430 . . . alleles " T C"; frequencies " 0.419012459621597 0.580987540378403"; depth 2167 ; known ; synonymous GL192609.1 samtools variation 1121790 1121790 . . . alleles " T C"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL192609.1 samtools variation 1121951 1121951 . . . alleles " C T"; frequencies " 0.630573248407643 0.369426751592357"; depth 157 ; known ; N/A GL192609.1 samtools variation 1122645 1122645 . . . alleles " T C"; frequencies " 0.502890173410405 0.497109826589595"; depth 173 ; unknown ; N/A GL192609.1 samtools variation 1122787 1122787 . . . alleles " C A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192609.1 samtools variation 1122793 1122793 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL192609.1 samtools variation 1122892 1122892 . . . alleles " T C"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; known ; N/A GL192609.1 samtools variation 1123167 1123167 . . . alleles " G A"; frequencies " 0.24 0.76"; depth 50 ; known ; N/A GL192609.1 samtools variation 1123185 1123185 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 50 ; known ; N/A GL192609.1 samtools variation 1123420 1123420 . . . alleles " A C"; frequencies " 0.732142857142857 0.267857142857143"; depth 56 ; known ; N/A GL192609.1 samtools variation 1124403 1124403 . . . alleles " C T"; frequencies " 0.668499175371083 0.329301814183617"; depth 1819 ; unknown ; synonymous GL192609.1 samtools variation 1124555 1124555 . . . alleles " A G"; frequencies " 0.605128205128205 0.38974358974359"; depth 195 ; unknown ; N/A GL192609.1 samtools variation 1124633 1124633 . . . alleles " G A"; frequencies " 0.784688995215311 0.215311004784689"; depth 209 ; unknown ; N/A GL192609.1 samtools variation 1124764 1124764 . . . alleles " G A"; frequencies " 0.677966101694915 0.322033898305085"; depth 59 ; unknown ; N/A GL192609.1 samtools variation 1125026 1125026 . . . alleles " A G"; frequencies " 0.683333333333333 0.316666666666667"; depth 120 ; unknown ; N/A GL192609.1 samtools variation 1125062 1125062 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 171 ; unknown ; N/A GL192609.1 samtools variation 1125076 1125076 . . . alleles " A G"; frequencies " 0.36144578313253 0.63855421686747"; depth 166 ; known ; N/A GL192609.1 samtools variation 1125369 1125369 . . . alleles " A C"; frequencies " 0.66412213740458 0.33587786259542"; depth 131 ; known ; N/A GL192609.1 samtools variation 1125412 1125412 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 225 ; known ; N/A GL192609.1 samtools variation 1125600 1125600 . . . alleles " A G"; frequencies " 0.661016949152542 0.327683615819209"; depth 177 ; known ; N/A GL192609.1 samtools variation 1125654 1125654 . . . alleles " C T"; frequencies " 0.581818181818182 0.418181818181818"; depth 220 ; known ; N/A GL192609.1 samtools variation 1125855 1125855 . . . alleles " G A"; frequencies " 0.472222222222222 0.527777777777778"; depth 36 ; known ; N/A GL192609.1 samtools variation 1125998 1125998 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 54 ; unknown ; N/A GL192609.1 samtools variation 1126012 1126012 . . . alleles " A G"; frequencies " 0.58 0.42"; depth 50 ; known ; N/A GL192609.1 samtools variation 1126046 1126046 . . . alleles " C G"; frequencies " 0.5125 0.4875"; depth 80 ; unknown ; N/A GL192609.1 samtools variation 1126051 1126051 . . . alleles " G C"; frequencies " 0.554347826086957 0.445652173913043"; depth 92 ; unknown ; N/A GL192609.1 samtools variation 1126269 1126269 . . . alleles " A T"; frequencies " 0.475609756097561 0.524390243902439"; depth 82 ; known ; N/A GL192609.1 samtools variation 1126862 1126862 . . . alleles " C T"; frequencies " 0.580858085808581 0.419141914191419"; depth 303 ; unknown ; N/A GL192609.1 samtools variation 1127109 1127109 . . . alleles " C T"; frequencies " 0.671428571428571 0.328571428571429"; depth 210 ; unknown ; N/A GL192609.1 samtools variation 1127146 1127146 . . . alleles " A G"; frequencies " 0.540983606557377 0.459016393442623"; depth 122 ; unknown ; N/A GL192609.1 samtools variation 1127220 1127220 . . . alleles " A T"; frequencies " 0.515463917525773 0.484536082474227"; depth 97 ; known ; N/A GL192609.1 samtools variation 1128304 1128304 . . . alleles " G A"; frequencies " 0.372093023255814 0.625"; depth 344 ; known ; N/A GL192609.1 samtools variation 1130551 1130551 . . . alleles " C G"; frequencies " 0.413366336633663 0.586633663366337"; depth 404 ; known ; N/A GL192609.1 samtools variation 1130563 1130563 . . . alleles " T C"; frequencies " 0.510948905109489 0.489051094890511"; depth 274 ; known ; N/A GL192609.1 samtools variation 1130667 1130667 . . . alleles " A G"; frequencies " 0.573122529644269 0.426877470355731"; depth 253 ; known ; N/A GL192609.1 samtools variation 1130773 1130773 . . . alleles " C A"; frequencies " 0.616621983914209 0.383378016085791"; depth 746 ; known ; N/A GL192609.1 samtools variation 1132475 1132475 . . . alleles " G A"; frequencies " 0.271899886234357 0.728100113765643"; depth 879 ; known ; N/A GL192609.1 samtools variation 1132617 1132617 . . . alleles " A C"; frequencies " 0.517291066282421 0.481268011527378"; depth 694 ; known ; N/A GL192609.1 samtools variation 1133287 1133287 . . . alleles " T C"; frequencies " 0.522856540973246 0.477143459026754"; depth 4747 ; known ; N/A GL192609.1 samtools variation 1133376 1133376 . . . alleles " T C"; frequencies " 0.348909657320872 0.651090342679128"; depth 2568 ; known ; N/A GL192609.1 samtools variation 1133394 1133394 . . . alleles " A G"; frequencies " 0.257104194857916 0.742895805142084"; depth 2217 ; known ; N/A GL192609.1 samtools variation 1136976 1136976 . . . alleles " G T"; frequencies " 0.625 0.375"; depth 24 ; known ; N/A GL192609.1 samtools variation 1188043 1188043 . . . alleles " G T"; frequencies " 0.519230769230769 0.480769230769231"; depth 52 ; known ; non-synonymous GL192609.1 samtools variation 1208433 1208433 . . . alleles " G T"; frequencies " 0.352112676056338 0.647887323943662"; depth 71 ; known ; N/A GL192609.1 samtools variation 1208518 1208518 . . . alleles " G A"; frequencies " 0.66 0.333333333333333"; depth 150 ; known ; N/A GL192609.1 samtools variation 1208727 1208727 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 63 ; known ; N/A GL192609.1 samtools variation 1208969 1208969 . . . alleles " A G"; frequencies " 0.454022988505747 0.545977011494253"; depth 174 ; known ; N/A GL192609.1 samtools variation 1209074 1209074 . . . alleles " C T"; frequencies " 0.669565217391304 0.330434782608696"; depth 115 ; known ; N/A GL192609.1 samtools variation 1234936 1234936 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192609.1 samtools variation 1236213 1236213 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192609.1 samtools variation 1258460 1258460 . . . alleles " T C"; frequencies " 0.409952606635071 0.590047393364929"; depth 422 ; known ; non-synonymous GL192609.1 samtools variation 1259263 1259263 . . . alleles " C A"; frequencies " 0.728813559322034 0.271186440677966"; depth 59 ; unknown ; synonymous GL192609.1 samtools variation 1259333 1259333 . . . alleles " A G"; frequencies " 0.709677419354839 0.290322580645161"; depth 93 ; known ; non-synonymous GL192609.1 samtools variation 1259487 1259487 . . . alleles " A G"; frequencies " 0.654320987654321 0.345679012345679"; depth 81 ; unknown ; N/A GL192609.1 samtools variation 1396760 1396760 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192609.1 samtools variation 1401955 1401955 . . . alleles " C G"; frequencies " 0.687022900763359 0.312977099236641"; depth 131 ; unknown ; non-synonymous GL192609.1 samtools variation 1407672 1407672 . . . alleles " A T"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; unknown ; synonymous GL192609.1 samtools variation 1409455 1409455 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; unknown ; non-synonymous GL192609.1 samtools variation 1629004 1629004 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192609.1 samtools variation 1653516 1653516 . . . alleles " T G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192609.1 samtools variation 1666602 1666602 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192610.1 samtools variation 960770 960770 . . . alleles " G C"; frequencies " 0.660714285714286 0.339285714285714"; depth 56 ; known ; N/A GL192610.1 samtools variation 1252308 1252308 . . . alleles " A G"; frequencies " 0.778761061946903 0.221238938053097"; depth 113 ; unknown ; N/A GL192610.1 samtools variation 1459398 1459398 . . . alleles " T C"; frequencies " 0.788331071913161 0.211668928086839"; depth 737 ; known ; synonymous GL192611.1 samtools variation 1351113 1351113 . . . alleles " A G"; frequencies " 0.244897959183673 0.755102040816326"; depth 49 ; unknown ; synonymous GL192611.1 samtools variation 1376252 1376252 . . . alleles " C A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192611.1 samtools variation 1378141 1378141 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; unknown ; N/A GL192612.1 samtools variation 242598 242598 . . . alleles " A C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192612.1 samtools variation 307501 307501 . . . alleles " T C"; frequencies " 0.25615763546798 0.74384236453202"; depth 406 ; unknown ; N/A GL192612.1 samtools variation 307538 307538 . . . alleles " A G"; frequencies " 0.350140056022409 0.649859943977591"; depth 357 ; unknown ; N/A GL192612.1 samtools variation 307669 307669 . . . alleles " G A"; frequencies " 0.36919315403423 0.63080684596577"; depth 409 ; unknown ; N/A GL192612.1 samtools variation 307673 307673 . . . alleles " G A"; frequencies " 0.387254901960784 0.612745098039216"; depth 408 ; unknown ; N/A GL192612.1 samtools variation 308124 308124 . . . alleles " G A"; frequencies " 0.479228486646884 0.520771513353116"; depth 674 ; unknown ; N/A GL192612.1 samtools variation 308134 308134 . . . alleles " G A"; frequencies " 0.497553017944535 0.502446982055465"; depth 613 ; unknown ; N/A GL192612.1 samtools variation 308367 308367 . . . alleles " A T"; frequencies " 0.795511221945137 0.204488778054863"; depth 401 ; unknown ; N/A GL192612.1 samtools variation 500753 500753 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192612.1 samtools variation 501575 501575 . . . alleles " C T"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; unknown ; N/A GL192612.1 samtools variation 501692 501692 . . . alleles " G T"; frequencies " 0.691176470588235 0.308823529411765"; depth 68 ; unknown ; N/A GL192612.1 samtools variation 501701 501701 . . . alleles " G A"; frequencies " 0.650485436893204 0.349514563106796"; depth 103 ; unknown ; N/A GL192612.1 samtools variation 505452 505452 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192612.1 samtools variation 508887 508887 . . . alleles " A G"; frequencies " 0.572984749455338 0.427015250544662"; depth 459 ; known ; synonymous GL192612.1 samtools variation 508941 508941 . . . alleles " T C"; frequencies " 0.232786885245902 0.767213114754098"; depth 305 ; known ; synonymous GL192612.1 samtools variation 508959 508959 . . . alleles " A G"; frequencies " 0.50140056022409 0.49859943977591"; depth 357 ; known ; synonymous GL192612.1 samtools variation 631115 631115 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; non-synonymous GL192612.1 samtools variation 642276 642276 . . . alleles " G A"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192612.1 samtools variation 650046 650046 . . . alleles " G A"; frequencies " 0.701492537313433 0.298507462686567"; depth 67 ; unknown ; N/A GL192612.1 samtools variation 650418 650418 . . . alleles " A G"; frequencies " 0.40625 0.59375"; depth 32 ; unknown ; N/A GL192612.1 samtools variation 650624 650624 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 260 ; unknown ; synonymous GL192612.1 samtools variation 651273 651273 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192612.1 samtools variation 651330 651330 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192612.1 samtools variation 652419 652419 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192612.1 samtools variation 652540 652540 . . . alleles " C A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192612.1 samtools variation 652592 652592 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192612.1 samtools variation 664975 664975 . . . alleles " C T"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; synonymous GL192612.1 samtools variation 664993 664993 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; synonymous GL192612.1 samtools variation 677309 677309 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; synonymous GL192612.1 samtools variation 1696600 1696600 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192612.1 samtools variation 1697041 1697041 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192614.1 samtools variation 673853 673853 . . . alleles " A G"; frequencies " 0.505882352941176 0.494117647058824"; depth 85 ; unknown ; N/A GL192614.1 samtools variation 674508 674508 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192614.1 samtools variation 674648 674648 . . . alleles " G A"; frequencies " 0.757009345794392 0.242990654205607"; depth 107 ; unknown ; N/A GL192614.1 samtools variation 674685 674685 . . . alleles " A G"; frequencies " 0.690647482014389 0.309352517985612"; depth 139 ; unknown ; N/A GL192614.1 samtools variation 674858 674858 . . . alleles " T C"; frequencies " 0.61136023916293 0.38863976083707"; depth 669 ; unknown ; N/A GL192614.1 samtools variation 674984 674984 . . . alleles " G T"; frequencies " 0.402431610942249 0.597568389057751"; depth 1645 ; unknown ; N/A GL192614.1 samtools variation 725520 725520 . . . alleles " T A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192614.1 samtools variation 725625 725625 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192614.1 samtools variation 725693 725693 . . . alleles " T A"; frequencies " 0.534883720930233 0.465116279069767"; depth 43 ; unknown ; N/A GL192614.1 samtools variation 726383 726383 . . . alleles " A T"; frequencies " 0.257142857142857 0.742857142857143"; depth 35 ; unknown ; N/A GL192614.1 samtools variation 853811 853811 . . . alleles " T G"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192614.1 samtools variation 869257 869257 . . . alleles " C G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; non-synonymous GL192614.1 samtools variation 869301 869301 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; known ; synonymous GL192614.1 samtools variation 869319 869319 . . . alleles " A G"; frequencies " 0.434210526315789 0.565789473684211"; depth 76 ; known ; synonymous GL192614.1 samtools variation 871112 871112 . . . alleles " A G"; frequencies " 0.772151898734177 0.227848101265823"; depth 79 ; unknown ; synonymous GL192614.1 samtools variation 871133 871133 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 87 ; unknown ; synonymous GL192614.1 samtools variation 871214 871214 . . . alleles " T C"; frequencies " 0.709677419354839 0.290322580645161"; depth 124 ; unknown ; synonymous GL192614.1 samtools variation 875571 875571 . . . alleles " G C"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; unknown ; non-synonymous GL192614.1 samtools variation 929749 929749 . . . alleles " A G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; synonymous GL192614.1 samtools variation 1153108 1153108 . . . alleles " A G"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; synonymous GL192614.1 samtools variation 1174136 1174136 . . . alleles " G T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192614.1 samtools variation 1176463 1176463 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192614.1 samtools variation 1203560 1203560 . . . alleles " A T"; frequencies " 0.293103448275862 0.706896551724138"; depth 58 ; known ; N/A GL192614.1 samtools variation 1204174 1204174 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192614.1 samtools variation 1222525 1222525 . . . alleles " C A"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL192614.1 samtools variation 1223195 1223195 . . . alleles " G C"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL192614.1 samtools variation 1518646 1518646 . . . alleles " C A"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192615.1 samtools variation 280629 280629 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192615.1 samtools variation 283541 283541 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 32 ; known ; N/A GL192615.1 samtools variation 283958 283958 . . . alleles " G A"; frequencies " 0.640625 0.359375"; depth 64 ; unknown ; N/A GL192615.1 samtools variation 283960 283960 . . . alleles " C G"; frequencies " 0.641791044776119 0.358208955223881"; depth 67 ; unknown ; N/A GL192615.1 samtools variation 284027 284027 . . . alleles " A T"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; known ; N/A GL192615.1 samtools variation 284953 284953 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192615.1 samtools variation 284968 284968 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192615.1 samtools variation 286380 286380 . . . alleles " T C"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; known ; N/A GL192615.1 samtools variation 286789 286789 . . . alleles " A C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192615.1 samtools variation 287099 287099 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192615.1 samtools variation 287134 287134 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192615.1 samtools variation 292277 292277 . . . alleles " G T"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL192615.1 samtools variation 299240 299240 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL192615.1 samtools variation 505825 505825 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192615.1 samtools variation 624304 624304 . . . alleles " T G"; frequencies " 0.4375 0.5625"; depth 48 ; known ; synonymous GL192615.1 samtools variation 626307 626307 . . . alleles " T C"; frequencies " 0.74390243902439 0.25609756097561"; depth 82 ; unknown ; synonymous GL192615.1 samtools variation 658075 658075 . . . alleles " C T"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; synonymous GL192615.1 samtools variation 1538998 1538998 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192615.1 samtools variation 1539304 1539304 . . . alleles " T G"; frequencies " 0.76271186440678 0.23728813559322"; depth 59 ; unknown ; N/A GL192615.1 samtools variation 1539803 1539803 . . . alleles " T C"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL192615.1 samtools variation 1539945 1539945 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192616.1 samtools variation 12033 12033 . . . alleles " A C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192616.1 samtools variation 12057 12057 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192616.1 samtools variation 12209 12209 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL192616.1 samtools variation 14963 14963 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192616.1 samtools variation 45212 45212 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192616.1 samtools variation 75117 75117 . . . alleles " C T"; frequencies " 0.765625 0.234375"; depth 64 ; unknown ; N/A GL192616.1 samtools variation 82982 82982 . . . alleles " A G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL192616.1 samtools variation 83366 83366 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; N/A GL192616.1 samtools variation 84158 84158 . . . alleles " A C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192616.1 samtools variation 89456 89456 . . . alleles " A G"; frequencies " 0.741463414634146 0.258536585365854"; depth 205 ; unknown ; non-synonymous GL192616.1 samtools variation 90237 90237 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192616.1 samtools variation 92912 92912 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192616.1 samtools variation 97634 97634 . . . alleles " A G"; frequencies " 0.374233128834356 0.625766871165644"; depth 326 ; known ; synonymous GL192616.1 samtools variation 98938 98938 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192616.1 samtools variation 99073 99073 . . . alleles " T C"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; known ; N/A GL192616.1 samtools variation 99113 99113 . . . alleles " A G"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; known ; N/A GL192616.1 samtools variation 101880 101880 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192616.1 samtools variation 105869 105869 . . . alleles " A G"; frequencies " 0.328767123287671 0.671232876712329"; depth 73 ; known ; non-synonymous GL192616.1 samtools variation 115117 115117 . . . alleles " C G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192616.1 samtools variation 115882 115882 . . . alleles " A C"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL192616.1 samtools variation 121491 121491 . . . alleles " G T"; frequencies " 0.706666666666667 0.293333333333333"; depth 150 ; known ; synonymous GL192616.1 samtools variation 121569 121569 . . . alleles " C T"; frequencies " 0.67948717948718 0.320512820512821"; depth 234 ; unknown ; N/A GL192616.1 samtools variation 122557 122557 . . . alleles " T C"; frequencies " 0.654135338345865 0.345864661654135"; depth 133 ; known ; N/A GL192616.1 samtools variation 317162 317162 . . . alleles " G A"; frequencies " 0.581395348837209 0.418604651162791"; depth 43 ; unknown ; N/A GL192616.1 samtools variation 317163 317163 . . . alleles " C A"; frequencies " 0.617021276595745 0.382978723404255"; depth 47 ; unknown ; N/A GL192616.1 samtools variation 317360 317360 . . . alleles " A G"; frequencies " 0.488095238095238 0.511904761904762"; depth 84 ; known ; synonymous GL192616.1 samtools variation 369058 369058 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192616.1 samtools variation 422966 422966 . . . alleles " T C"; frequencies " 0.558139534883721 0.441860465116279"; depth 43 ; known ; N/A GL192616.1 samtools variation 1331007 1331007 . . . alleles " C T"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; synonymous GL192616.1 samtools variation 1333383 1333383 . . . alleles " T C"; frequencies " 0.355555555555556 0.644444444444444"; depth 45 ; unknown ; synonymous GL192616.1 samtools variation 1342041 1342041 . . . alleles " A C"; frequencies " 0.728813559322034 0.271186440677966"; depth 59 ; unknown ; N/A GL192616.1 samtools variation 1342216 1342216 . . . alleles " C T"; frequencies " 0.596153846153846 0.403846153846154"; depth 52 ; unknown ; N/A GL192616.1 samtools variation 1342247 1342247 . . . alleles " T C"; frequencies " 0.607142857142857 0.392857142857143"; depth 56 ; unknown ; N/A GL192616.1 samtools variation 1342314 1342314 . . . alleles " G A"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; N/A GL192616.1 samtools variation 1342448 1342448 . . . alleles " C G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192616.1 samtools variation 1720793 1720793 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 84 ; unknown ; N/A GL192616.1 samtools variation 1720844 1720844 . . . alleles " T C"; frequencies " 0.298850574712644 0.701149425287356"; depth 87 ; unknown ; N/A GL192616.1 samtools variation 1733869 1733869 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192616.1 samtools variation 1793712 1793712 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192616.1 samtools variation 1795060 1795060 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192616.1 samtools variation 1795955 1795955 . . . alleles " C T"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192617.1 samtools variation 1166655 1166655 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 54 ; unknown ; synonymous GL192617.1 samtools variation 1167779 1167779 . . . alleles " G T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192617.1 samtools variation 1263020 1263020 . . . alleles " T C"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL192617.1 samtools variation 1263617 1263617 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192617.1 samtools variation 1265351 1265351 . . . alleles " G A"; frequencies " 0.788194444444444 0.211805555555556"; depth 576 ; known ; N/A GL192617.1 samtools variation 1265731 1265731 . . . alleles " T C"; frequencies " 0.318007662835249 0.681992337164751"; depth 261 ; known ; N/A GL192617.1 samtools variation 1267835 1267835 . . . alleles " C T"; frequencies " 0.69309462915601 0.30690537084399"; depth 391 ; unknown ; synonymous GL192617.1 samtools variation 1278421 1278421 . . . alleles " T C"; frequencies " 0.609756097560976 0.390243902439024"; depth 41 ; unknown ; N/A GL192617.1 samtools variation 1278502 1278502 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192617.1 samtools variation 1282541 1282541 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192618.1 samtools variation 6751 6751 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192618.1 samtools variation 12560 12560 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192618.1 samtools variation 12561 12561 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192618.1 samtools variation 250240 250240 . . . alleles " G A"; frequencies " 0.765625 0.234375"; depth 64 ; unknown ; N/A GL192618.1 samtools variation 359830 359830 . . . alleles " T C"; frequencies " 0.656565656565657 0.343434343434343"; depth 99 ; unknown ; N/A GL192618.1 samtools variation 361370 361370 . . . alleles " C T"; frequencies " 0.790909090909091 0.209090909090909"; depth 110 ; known ; N/A GL192618.1 samtools variation 367130 367130 . . . alleles " A C"; frequencies " 0.207142857142857 0.792857142857143"; depth 280 ; known ; non-synonymous GL192618.1 samtools variation 367192 367192 . . . alleles " G C"; frequencies " 0.25 0.75"; depth 232 ; known ; synonymous GL192618.1 samtools variation 367222 367222 . . . alleles " C A"; frequencies " 0.497942386831276 0.502057613168724"; depth 243 ; unknown ; synonymous GL192618.1 samtools variation 394630 394630 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192618.1 samtools variation 403188 403188 . . . alleles " A C"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; known ; N/A GL192618.1 samtools variation 406379 406379 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192618.1 samtools variation 408883 408883 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192618.1 samtools variation 812983 812983 . . . alleles " C A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192618.1 samtools variation 814409 814409 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192618.1 samtools variation 815288 815288 . . . alleles " A G"; frequencies " 0.511041009463722 0.488958990536278"; depth 1268 ; known ; N/A GL192618.1 samtools variation 815313 815313 . . . alleles " C T"; frequencies " 0.530698659139026 0.469301340860974"; depth 1417 ; known ; N/A GL192618.1 samtools variation 815469 815469 . . . alleles " G C"; frequencies " 0.625231910946197 0.374768089053803"; depth 1078 ; known ; N/A GL192618.1 samtools variation 816119 816119 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192618.1 samtools variation 817054 817054 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192618.1 samtools variation 819400 819400 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192618.1 samtools variation 825733 825733 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192618.1 samtools variation 923185 923185 . . . alleles " C T"; frequencies " 0.758333333333333 0.241666666666667"; depth 240 ; unknown ; N/A GL192618.1 samtools variation 923193 923193 . . . alleles " C T"; frequencies " 0.734513274336283 0.265486725663717"; depth 226 ; unknown ; N/A GL192618.1 samtools variation 923691 923691 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192618.1 samtools variation 924785 924785 . . . alleles " G A"; frequencies " 0.768888888888889 0.231111111111111"; depth 225 ; unknown ; synonymous GL192618.1 samtools variation 925281 925281 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; synonymous GL192618.1 samtools variation 929672 929672 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192618.1 samtools variation 932095 932095 . . . alleles " C T"; frequencies " 0.352112676056338 0.647887323943662"; depth 71 ; unknown ; synonymous GL192618.1 samtools variation 932099 932099 . . . alleles " C T"; frequencies " 0.337837837837838 0.662162162162162"; depth 74 ; unknown ; non-synonymous GL192618.1 samtools variation 934289 934289 . . . alleles " T C"; frequencies " 0.418181818181818 0.581818181818182"; depth 55 ; unknown ; synonymous GL192618.1 samtools variation 935559 935559 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192618.1 samtools variation 941344 941344 . . . alleles " G C"; frequencies " 0.770114942528736 0.229885057471264"; depth 174 ; unknown ; N/A GL192618.1 samtools variation 1050500 1050500 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; unknown ; N/A GL192618.1 samtools variation 1050688 1050688 . . . alleles " G C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192618.1 samtools variation 1051242 1051242 . . . alleles " C G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL192618.1 samtools variation 1051429 1051429 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192618.1 samtools variation 1054793 1054793 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192618.1 samtools variation 1055112 1055112 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192618.1 samtools variation 1056157 1056157 . . . alleles " T C"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; unknown ; N/A GL192618.1 samtools variation 1056165 1056165 . . . alleles " T G"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; unknown ; N/A GL192618.1 samtools variation 1056598 1056598 . . . alleles " C T"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192618.1 samtools variation 1056654 1056654 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192618.1 samtools variation 1057744 1057744 . . . alleles " T C"; frequencies " 0.423728813559322 0.576271186440678"; depth 59 ; unknown ; non-synonymous GL192618.1 samtools variation 1057826 1057826 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 48 ; unknown ; synonymous GL192618.1 samtools variation 1058128 1058128 . . . alleles " A G"; frequencies " 0.287179487179487 0.707692307692308"; depth 195 ; unknown ; non-synonymous GL192618.1 samtools variation 1058288 1058288 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 84 ; unknown ; synonymous GL192618.1 samtools variation 1062677 1062677 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192618.1 samtools variation 1063408 1063408 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192618.1 samtools variation 1063543 1063543 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192618.1 samtools variation 1064979 1064979 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192618.1 samtools variation 1066369 1066369 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192618.1 samtools variation 1071287 1071287 . . . alleles " G T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192618.1 samtools variation 1073529 1073529 . . . alleles " G A"; frequencies " 0.449760765550239 0.550239234449761"; depth 209 ; unknown ; synonymous GL192618.1 samtools variation 1073703 1073703 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; synonymous GL192618.1 samtools variation 1073811 1073811 . . . alleles " G A"; frequencies " 0.787878787878788 0.212121212121212"; depth 66 ; unknown ; synonymous GL192618.1 samtools variation 1073820 1073820 . . . alleles " C T"; frequencies " 0.754385964912281 0.245614035087719"; depth 57 ; unknown ; synonymous GL192618.1 samtools variation 1074057 1074057 . . . alleles " C T"; frequencies " 0.769736842105263 0.230263157894737"; depth 152 ; unknown ; synonymous GL192618.1 samtools variation 1074625 1074625 . . . alleles " C A"; frequencies " 0.717171717171717 0.282828282828283"; depth 99 ; unknown ; N/A GL192618.1 samtools variation 1075057 1075057 . . . alleles " C T"; frequencies " 0.782857142857143 0.217142857142857"; depth 175 ; unknown ; N/A GL192618.1 samtools variation 1075157 1075157 . . . alleles " C T"; frequencies " 0.737704918032787 0.262295081967213"; depth 244 ; unknown ; N/A GL192618.1 samtools variation 1075728 1075728 . . . alleles " C T"; frequencies " 0.676056338028169 0.323943661971831"; depth 142 ; unknown ; N/A GL192618.1 samtools variation 1075749 1075749 . . . alleles " C T"; frequencies " 0.683544303797468 0.316455696202532"; depth 158 ; unknown ; N/A GL192618.1 samtools variation 1076604 1076604 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 117 ; unknown ; N/A GL192618.1 samtools variation 1076610 1076610 . . . alleles " T C"; frequencies " 0.521276595744681 0.478723404255319"; depth 94 ; unknown ; N/A GL192618.1 samtools variation 1077241 1077241 . . . alleles " T G"; frequencies " 0.252252252252252 0.747747747747748"; depth 111 ; unknown ; N/A GL192618.1 samtools variation 1077471 1077471 . . . alleles " G A"; frequencies " 0.712707182320442 0.287292817679558"; depth 181 ; unknown ; N/A GL192618.1 samtools variation 1163755 1163755 . . . alleles " T A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192618.1 samtools variation 1297945 1297945 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192618.1 samtools variation 1303157 1303157 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 42 ; unknown ; N/A GL192618.1 samtools variation 1322204 1322204 . . . alleles " C A"; frequencies " 0.682539682539683 0.317460317460317"; depth 126 ; known ; N/A GL192618.1 samtools variation 1349140 1349140 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192618.1 samtools variation 1349889 1349889 . . . alleles " C G"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192618.1 samtools variation 1349890 1349890 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192618.1 samtools variation 1381118 1381118 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192618.1 samtools variation 1388753 1388753 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192618.1 samtools variation 1392521 1392521 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192618.1 samtools variation 1401512 1401512 . . . alleles " T C"; frequencies " 0.51219512195122 0.48780487804878"; depth 41 ; unknown ; N/A GL192618.1 samtools variation 1404275 1404275 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192618.1 samtools variation 1405949 1405949 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192618.1 samtools variation 1412344 1412344 . . . alleles " A C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192618.1 samtools variation 1415234 1415234 . . . alleles " T C"; frequencies " 0.685106382978723 0.314893617021277"; depth 235 ; unknown ; synonymous GL192618.1 samtools variation 1416799 1416799 . . . alleles " A C"; frequencies " 0.706521739130435 0.293478260869565"; depth 92 ; unknown ; N/A GL192618.1 samtools variation 1416805 1416805 . . . alleles " T C"; frequencies " 0.738095238095238 0.261904761904762"; depth 84 ; unknown ; N/A GL192618.1 samtools variation 1417582 1417582 . . . alleles " T A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192618.1 samtools variation 1418639 1418639 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192618.1 samtools variation 1418978 1418978 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 72 ; unknown ; N/A GL192618.1 samtools variation 1419078 1419078 . . . alleles " A C"; frequencies " 0.795275590551181 0.204724409448819"; depth 635 ; unknown ; synonymous GL192618.1 samtools variation 1419883 1419883 . . . alleles " C T"; frequencies " 0.687179487179487 0.312820512820513"; depth 195 ; unknown ; synonymous GL192618.1 samtools variation 1421053 1421053 . . . alleles " A G"; frequencies " 0.657686212361331 0.342313787638669"; depth 631 ; unknown ; synonymous GL192618.1 samtools variation 1422302 1422302 . . . alleles " A G"; frequencies " 0.735955056179775 0.264044943820225"; depth 178 ; unknown ; N/A GL192618.1 samtools variation 1426492 1426492 . . . alleles " G A"; frequencies " 0.716763005780347 0.283236994219653"; depth 173 ; unknown ; N/A GL192618.1 samtools variation 1521772 1521772 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192618.1 samtools variation 1540854 1540854 . . . alleles " T C"; frequencies " 0.468571428571429 0.531428571428571"; depth 175 ; unknown ; synonymous GL192618.1 samtools variation 1546181 1546181 . . . alleles " T C"; frequencies " 0.412213740458015 0.587786259541985"; depth 131 ; unknown ; N/A GL192618.1 samtools variation 1585327 1585327 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192618.1 samtools variation 1585340 1585340 . . . alleles " C G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192618.1 samtools variation 1585633 1585633 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 34 ; unknown ; N/A GL192618.1 samtools variation 1585802 1585802 . . . alleles " T C"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192618.1 samtools variation 1585849 1585849 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192618.1 samtools variation 1587347 1587347 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192618.1 samtools variation 1598443 1598443 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192618.1 samtools variation 1613923 1613923 . . . alleles " T A"; frequencies " 0.230769230769231 0.769230769230769"; depth 104 ; unknown ; non-synonymous GL192618.1 samtools variation 1619806 1619806 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192618.1 samtools variation 1619813 1619813 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192618.1 samtools variation 1620538 1620538 . . . alleles " T C"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; unknown ; N/A GL192618.1 samtools variation 1622015 1622015 . . . alleles " T A"; frequencies " 0.342105263157895 0.657894736842105"; depth 38 ; unknown ; N/A GL192618.1 samtools variation 1623160 1623160 . . . alleles " C T"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; unknown ; N/A GL192618.1 samtools variation 1623243 1623243 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL192618.1 samtools variation 1625258 1625258 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL192618.1 samtools variation 1625680 1625680 . . . alleles " A T"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL192618.1 samtools variation 1626489 1626489 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192618.1 samtools variation 1629409 1629409 . . . alleles " C T"; frequencies " 0.296296296296296 0.703703703703704"; depth 54 ; unknown ; N/A GL192618.1 samtools variation 1629410 1629410 . . . alleles " T G"; frequencies " 0.285714285714286 0.714285714285714"; depth 56 ; unknown ; N/A GL192618.1 samtools variation 1637449 1637449 . . . alleles " C G"; frequencies " 0.2 0.8"; depth 60 ; unknown ; N/A GL192618.1 samtools variation 1638016 1638016 . . . alleles " G A"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL192618.1 samtools variation 1640498 1640498 . . . alleles " C T"; frequencies " 0.612403100775194 0.387596899224806"; depth 258 ; unknown ; non-synonymous GL192618.1 samtools variation 1640840 1640840 . . . alleles " A G"; frequencies " 0.560747663551402 0.439252336448598"; depth 107 ; unknown ; synonymous GL192618.1 samtools variation 1640846 1640846 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 108 ; unknown ; non-synonymous GL192618.1 samtools variation 1643861 1643861 . . . alleles " G T"; frequencies " 0.567567567567568 0.432432432432432"; depth 111 ; unknown ; non-synonymous GL192618.1 samtools variation 1653193 1653193 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192618.1 samtools variation 1662928 1662928 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192618.1 samtools variation 1663835 1663835 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 32 ; known ; N/A GL192618.1 samtools variation 1680621 1680621 . . . alleles " G A"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; N/A GL192618.1 samtools variation 1718285 1718285 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 84 ; unknown ; synonymous GL192618.1 samtools variation 1718363 1718363 . . . alleles " A G"; frequencies " 0.621951219512195 0.378048780487805"; depth 82 ; unknown ; synonymous GL192618.1 samtools variation 1787887 1787887 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192618.1 samtools variation 1789544 1789544 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192618.1 samtools variation 1797502 1797502 . . . alleles " G T"; frequencies " 0.623456790123457 0.376543209876543"; depth 162 ; unknown ; N/A GL192618.1 samtools variation 1797614 1797614 . . . alleles " A C"; frequencies " 0.594059405940594 0.405940594059406"; depth 101 ; unknown ; N/A GL192619.1 samtools variation 377063 377063 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 60 ; unknown ; N/A GL192619.1 samtools variation 377708 377708 . . . alleles " G A"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; unknown ; N/A GL192619.1 samtools variation 382580 382580 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL192619.1 samtools variation 385563 385563 . . . alleles " C A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192619.1 samtools variation 388448 388448 . . . alleles " A C"; frequencies " 0.2 0.75"; depth 20 ; known ; N/A GL192619.1 samtools variation 412496 412496 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL192619.1 samtools variation 412556 412556 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192619.1 samtools variation 413019 413019 . . . alleles " C G"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; known ; N/A GL192619.1 samtools variation 453049 453049 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 28 ; known ; N/A GL192619.1 samtools variation 453918 453918 . . . alleles " A G"; frequencies " 0.577777777777778 0.422222222222222"; depth 45 ; known ; N/A GL192619.1 samtools variation 454316 454316 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 56 ; known ; N/A GL192619.1 samtools variation 454894 454894 . . . alleles " C T"; frequencies " 0.639175257731959 0.360824742268041"; depth 97 ; unknown ; N/A GL192619.1 samtools variation 528289 528289 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192619.1 samtools variation 529239 529239 . . . alleles " G A"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192619.1 samtools variation 531049 531049 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192619.1 samtools variation 531859 531859 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192619.1 samtools variation 532176 532176 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192619.1 samtools variation 566707 566707 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192619.1 samtools variation 629473 629473 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192619.1 samtools variation 685619 685619 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL192619.1 samtools variation 691183 691183 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192619.1 samtools variation 692548 692548 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192619.1 samtools variation 693729 693729 . . . alleles " G A"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192619.1 samtools variation 694012 694012 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192619.1 samtools variation 694187 694187 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192619.1 samtools variation 695338 695338 . . . alleles " G A"; frequencies " 0.28 0.72"; depth 25 ; known ; N/A GL192619.1 samtools variation 695746 695746 . . . alleles " G C"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192619.1 samtools variation 696697 696697 . . . alleles " C T"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL192619.1 samtools variation 696698 696698 . . . alleles " G T"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; known ; N/A GL192619.1 samtools variation 697916 697916 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192619.1 samtools variation 697967 697967 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192619.1 samtools variation 698146 698146 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192619.1 samtools variation 698184 698184 . . . alleles " G A"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL192619.1 samtools variation 702423 702423 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192619.1 samtools variation 710811 710811 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192619.1 samtools variation 713111 713111 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192619.1 samtools variation 729951 729951 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192619.1 samtools variation 732797 732797 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192619.1 samtools variation 733267 733267 . . . alleles " C A"; frequencies " 0.233333333333333 0.766666666666667"; depth 30 ; known ; N/A GL192619.1 samtools variation 734332 734332 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192619.1 samtools variation 826482 826482 . . . alleles " T G"; frequencies " 0.650485436893204 0.349514563106796"; depth 103 ; known ; N/A GL192619.1 samtools variation 827627 827627 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL192619.1 samtools variation 827704 827704 . . . alleles " A C"; frequencies " 0.314285714285714 0.685714285714286"; depth 35 ; known ; N/A GL192619.1 samtools variation 827816 827816 . . . alleles " G A"; frequencies " 0.779661016949153 0.220338983050847"; depth 59 ; known ; N/A GL192619.1 samtools variation 827883 827883 . . . alleles " A G"; frequencies " 0.593220338983051 0.406779661016949"; depth 59 ; unknown ; N/A GL192619.1 samtools variation 827947 827947 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL192619.1 samtools variation 828044 828044 . . . alleles " G C"; frequencies " 0.212121212121212 0.787878787878788"; depth 33 ; known ; N/A GL192619.1 samtools variation 828214 828214 . . . alleles " C T"; frequencies " 0.211618257261411 0.788381742738589"; depth 482 ; known ; N/A GL192619.1 samtools variation 828587 828587 . . . alleles " A G"; frequencies " 0.295454545454545 0.704545454545455"; depth 44 ; known ; N/A GL192619.1 samtools variation 830844 830844 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192619.1 samtools variation 832504 832504 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 38 ; known ; N/A GL192619.1 samtools variation 832519 832519 . . . alleles " C T"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; N/A GL192619.1 samtools variation 832545 832545 . . . alleles " A T"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; known ; N/A GL192619.1 samtools variation 833737 833737 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192619.1 samtools variation 835751 835751 . . . alleles " C A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192619.1 samtools variation 837850 837850 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 40 ; unknown ; N/A GL192619.1 samtools variation 838500 838500 . . . alleles " G T"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL192619.1 samtools variation 838582 838582 . . . alleles " C T"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL192619.1 samtools variation 839666 839666 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL192619.1 samtools variation 839874 839874 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192619.1 samtools variation 842498 842498 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192619.1 samtools variation 843459 843459 . . . alleles " A G"; frequencies " 0.708333333333333 0.291666666666667"; depth 48 ; known ; N/A GL192619.1 samtools variation 843483 843483 . . . alleles " G A"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; N/A GL192619.1 samtools variation 844979 844979 . . . alleles " G A"; frequencies " 0.715268225584594 0.284731774415406"; depth 727 ; unknown ; synonymous GL192619.1 samtools variation 846116 846116 . . . alleles " C A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192619.1 samtools variation 846538 846538 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 60 ; unknown ; N/A GL192619.1 samtools variation 846580 846580 . . . alleles " A G"; frequencies " 0.711538461538462 0.288461538461538"; depth 52 ; unknown ; N/A GL192619.1 samtools variation 887816 887816 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL192619.1 samtools variation 894100 894100 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192619.1 samtools variation 894199 894199 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192619.1 samtools variation 894851 894851 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL192619.1 samtools variation 903119 903119 . . . alleles " C G"; frequencies " 0.675 0.325"; depth 40 ; known ; N/A GL192619.1 samtools variation 930776 930776 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL192619.1 samtools variation 962500 962500 . . . alleles " A C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192619.1 samtools variation 964902 964902 . . . alleles " G A"; frequencies " 0.245283018867925 0.754716981132076"; depth 53 ; known ; N/A GL192619.1 samtools variation 966774 966774 . . . alleles " T A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192619.1 samtools variation 968869 968869 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL192619.1 samtools variation 973174 973174 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192619.1 samtools variation 973832 973832 . . . alleles " T G"; frequencies " 0.458823529411765 0.541176470588235"; depth 85 ; unknown ; N/A GL192619.1 samtools variation 976118 976118 . . . alleles " A C"; frequencies " 0.457627118644068 0.525423728813559"; depth 59 ; unknown ; N/A GL192619.1 samtools variation 976808 976808 . . . alleles " G A"; frequencies " 0.580645161290323 0.419354838709677"; depth 124 ; unknown ; N/A GL192619.1 samtools variation 977894 977894 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 77 ; known ; N/A GL192619.1 samtools variation 978239 978239 . . . alleles " C T"; frequencies " 0.406015037593985 0.593984962406015"; depth 133 ; unknown ; N/A GL192619.1 samtools variation 978279 978279 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 56 ; unknown ; N/A GL192619.1 samtools variation 1037766 1037766 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192620.1 samtools variation 626128 626128 . . . alleles " A G"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192620.1 samtools variation 628098 628098 . . . alleles " C A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192620.1 samtools variation 662501 662501 . . . alleles " A C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192620.1 samtools variation 860880 860880 . . . alleles " T C"; frequencies " 0.496350364963504 0.503649635036496"; depth 137 ; unknown ; synonymous GL192620.1 samtools variation 872670 872670 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192620.1 samtools variation 872718 872718 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192620.1 samtools variation 1612242 1612242 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; synonymous GL192620.1 samtools variation 1643120 1643120 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192620.1 samtools variation 1643171 1643171 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192620.1 samtools variation 1816699 1816699 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; synonymous GL192621.1 samtools variation 819909 819909 . . . alleles " T C"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; known ; N/A GL192621.1 samtools variation 820003 820003 . . . alleles " T A"; frequencies " 0.256880733944954 0.743119266055046"; depth 327 ; known ; N/A GL192621.1 samtools variation 820008 820008 . . . alleles " T A"; frequencies " 0.25297619047619 0.74702380952381"; depth 336 ; known ; N/A GL192621.1 samtools variation 820095 820095 . . . alleles " T C"; frequencies " 0.319148936170213 0.680851063829787"; depth 235 ; known ; non-synonymous GL192621.1 samtools variation 841008 841008 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL192621.1 samtools variation 841009 841009 . . . alleles " C A"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL192621.1 samtools variation 841024 841024 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL192621.1 samtools variation 1113231 1113231 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 90 ; known ; synonymous GL192621.1 samtools variation 1435608 1435608 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 24 ; known ; synonymous GL192621.1 samtools variation 1447008 1447008 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; synonymous GL192622.1 samtools variation 192824 192824 . . . alleles " T G"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192622.1 samtools variation 195787 195787 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 40 ; unknown ; synonymous GL192623.1 samtools variation 16213 16213 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192623.1 samtools variation 16518 16518 . . . alleles " A G"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; known ; N/A GL192623.1 samtools variation 16799 16799 . . . alleles " G A"; frequencies " 0.655555555555556 0.344444444444444"; depth 90 ; known ; N/A GL192623.1 samtools variation 16835 16835 . . . alleles " T C"; frequencies " 0.644067796610169 0.355932203389831"; depth 59 ; unknown ; N/A GL192623.1 samtools variation 17002 17002 . . . alleles " G A"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL192623.1 samtools variation 17175 17175 . . . alleles " A G"; frequencies " 0.419047619047619 0.580952380952381"; depth 105 ; unknown ; synonymous GL192623.1 samtools variation 17207 17207 . . . alleles " C T"; frequencies " 0.563106796116505 0.436893203883495"; depth 103 ; unknown ; non-synonymous GL192623.1 samtools variation 17231 17231 . . . alleles " T C"; frequencies " 0.646341463414634 0.353658536585366"; depth 82 ; unknown ; non-synonymous GL192623.1 samtools variation 17297 17297 . . . alleles " C G"; frequencies " 0.410958904109589 0.589041095890411"; depth 73 ; unknown ; non-synonymous GL192623.1 samtools variation 18390 18390 . . . alleles " G A"; frequencies " 0.369230769230769 0.630769230769231"; depth 65 ; unknown ; synonymous GL192623.1 samtools variation 18683 18683 . . . alleles " A G"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL192623.1 samtools variation 18767 18767 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192623.1 samtools variation 18968 18968 . . . alleles " C T"; frequencies " 0.555555555555556 0.388888888888889"; depth 18 ; known ; N/A GL192623.1 samtools variation 20016 20016 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192623.1 samtools variation 20032 20032 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192623.1 samtools variation 20450 20450 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192623.1 samtools variation 22262 22262 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 52 ; unknown ; N/A GL192623.1 samtools variation 24030 24030 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192623.1 samtools variation 1210631 1210631 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL192624.1 samtools variation 131856 131856 . . . alleles " T G"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL192624.1 samtools variation 145758 145758 . . . alleles " T C"; frequencies " 0.728070175438597 0.271929824561404"; depth 114 ; unknown ; N/A GL192624.1 samtools variation 149329 149329 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192624.1 samtools variation 335926 335926 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192624.1 samtools variation 346572 346572 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192624.1 samtools variation 351850 351850 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192624.1 samtools variation 354286 354286 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192624.1 samtools variation 1526870 1526870 . . . alleles " T G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192625.1 samtools variation 12252 12252 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192625.1 samtools variation 12301 12301 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192625.1 samtools variation 12313 12313 . . . alleles " C T"; frequencies " 0.216216216216216 0.783783783783784"; depth 37 ; unknown ; N/A GL192625.1 samtools variation 12751 12751 . . . alleles " G A"; frequencies " 0.24390243902439 0.75609756097561"; depth 41 ; unknown ; non-synonymous GL192625.1 samtools variation 12788 12788 . . . alleles " T C"; frequencies " 0.59375 0.40625"; depth 64 ; unknown ; non-synonymous GL192625.1 samtools variation 17806 17806 . . . alleles " G C"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; known ; N/A GL192625.1 samtools variation 327804 327804 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192626.1 samtools variation 30051 30051 . . . alleles " A G"; frequencies " 0.618181818181818 0.381818181818182"; depth 55 ; unknown ; N/A GL192626.1 samtools variation 30408 30408 . . . alleles " T C"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; N/A GL192626.1 samtools variation 50887 50887 . . . alleles " A G"; frequencies " 0.436363636363636 0.563636363636364"; depth 55 ; unknown ; N/A GL192626.1 samtools variation 271830 271830 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192627.1 samtools variation 1254588 1254588 . . . alleles " A C"; frequencies " 0.722222222222222 0.277777777777778"; depth 54 ; known ; N/A GL192627.1 samtools variation 1432993 1432993 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192627.1 samtools variation 1433090 1433090 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192627.1 samtools variation 1499229 1499229 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192627.1 samtools variation 1505652 1505652 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192627.1 samtools variation 1522187 1522187 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192627.1 samtools variation 1523308 1523308 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192628.1 samtools variation 74685 74685 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192628.1 samtools variation 74697 74697 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192628.1 samtools variation 74781 74781 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL192628.1 samtools variation 75039 75039 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; known ; N/A GL192628.1 samtools variation 88874 88874 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192628.1 samtools variation 90286 90286 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192628.1 samtools variation 97639 97639 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192628.1 samtools variation 101712 101712 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192628.1 samtools variation 101820 101820 . . . alleles " G A"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; known ; N/A GL192628.1 samtools variation 109140 109140 . . . alleles " A G"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; N/A GL192628.1 samtools variation 110212 110212 . . . alleles " T C"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; known ; N/A GL192628.1 samtools variation 114316 114316 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; N/A GL192628.1 samtools variation 144079 144079 . . . alleles " T C"; frequencies " 0.590361445783133 0.409638554216867"; depth 83 ; known ; N/A GL192628.1 samtools variation 147715 147715 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 32 ; known ; N/A GL192628.1 samtools variation 148111 148111 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 49 ; known ; N/A GL192628.1 samtools variation 150179 150179 . . . alleles " T C"; frequencies " 0.650602409638554 0.349397590361446"; depth 83 ; known ; N/A GL192628.1 samtools variation 150638 150638 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 112 ; known ; N/A GL192628.1 samtools variation 151014 151014 . . . alleles " A G"; frequencies " 0.54421768707483 0.45578231292517"; depth 147 ; known ; N/A GL192628.1 samtools variation 152269 152269 . . . alleles " A G"; frequencies " 0.407821229050279 0.58659217877095"; depth 179 ; known ; N/A GL192628.1 samtools variation 152699 152699 . . . alleles " C T"; frequencies " 0.41747572815534 0.58252427184466"; depth 103 ; known ; N/A GL192628.1 samtools variation 152858 152858 . . . alleles " A C"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; unknown ; N/A GL192628.1 samtools variation 155110 155110 . . . alleles " C T"; frequencies " 0.574746008708273 0.425253991291727"; depth 689 ; known ; N/A GL192628.1 samtools variation 156813 156813 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192628.1 samtools variation 156884 156884 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; known ; N/A GL192628.1 samtools variation 157394 157394 . . . alleles " G C"; frequencies " 0.574468085106383 0.425531914893617"; depth 47 ; known ; N/A GL192628.1 samtools variation 158802 158802 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 34 ; known ; N/A GL192628.1 samtools variation 159531 159531 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192628.1 samtools variation 159910 159910 . . . alleles " T A"; frequencies " 0.528301886792453 0.471698113207547"; depth 53 ; known ; N/A GL192628.1 samtools variation 159961 159961 . . . alleles " A G"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; known ; N/A GL192628.1 samtools variation 159993 159993 . . . alleles " G C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL192628.1 samtools variation 160081 160081 . . . alleles " G A"; frequencies " 0.530612244897959 0.469387755102041"; depth 49 ; known ; N/A GL192628.1 samtools variation 160121 160121 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; N/A GL192628.1 samtools variation 160290 160290 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192628.1 samtools variation 205438 205438 . . . alleles " C T"; frequencies " 0.76 0.24"; depth 50 ; known ; N/A GL192628.1 samtools variation 209434 209434 . . . alleles " G A"; frequencies " 0.34453781512605 0.65546218487395"; depth 119 ; known ; synonymous GL192628.1 samtools variation 213111 213111 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192628.1 samtools variation 231423 231423 . . . alleles " C G"; frequencies " 0.675324675324675 0.324675324675325"; depth 77 ; unknown ; N/A GL192628.1 samtools variation 231865 231865 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; synonymous GL192628.1 samtools variation 243531 243531 . . . alleles " G A"; frequencies " 0.711206896551724 0.288793103448276"; depth 232 ; unknown ; N/A GL192628.1 samtools variation 243710 243710 . . . alleles " A G"; frequencies " 0.795698924731183 0.204301075268817"; depth 93 ; unknown ; N/A GL192628.1 samtools variation 244086 244086 . . . alleles " G A"; frequencies " 0.692857142857143 0.307142857142857"; depth 140 ; unknown ; N/A GL192628.1 samtools variation 244122 244122 . . . alleles " A G"; frequencies " 0.690566037735849 0.309433962264151"; depth 265 ; unknown ; N/A GL192628.1 samtools variation 244743 244743 . . . alleles " C G"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL192628.1 samtools variation 244823 244823 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192628.1 samtools variation 244874 244874 . . . alleles " T C"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL192628.1 samtools variation 244935 244935 . . . alleles " T A"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; unknown ; N/A GL192628.1 samtools variation 245045 245045 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL192628.1 samtools variation 260909 260909 . . . alleles " A C"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; synonymous GL192628.1 samtools variation 262315 262315 . . . alleles " T C"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; known ; synonymous GL192628.1 samtools variation 263191 263191 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 135 ; known ; N/A GL192628.1 samtools variation 288342 288342 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL192628.1 samtools variation 293315 293315 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192628.1 samtools variation 296707 296707 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192628.1 samtools variation 296757 296757 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192628.1 samtools variation 297520 297520 . . . alleles " G C"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; known ; N/A GL192628.1 samtools variation 297539 297539 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 32 ; known ; N/A GL192628.1 samtools variation 298227 298227 . . . alleles " G A"; frequencies " 0.35 0.65"; depth 40 ; known ; N/A GL192628.1 samtools variation 299742 299742 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192628.1 samtools variation 300136 300136 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 85 ; known ; N/A GL192628.1 samtools variation 301564 301564 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192628.1 samtools variation 324775 324775 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192628.1 samtools variation 330876 330876 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; synonymous GL192628.1 samtools variation 330924 330924 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 18 ; known ; synonymous GL192628.1 samtools variation 332444 332444 . . . alleles " G A"; frequencies " 0.59375 0.40625"; depth 32 ; known ; synonymous GL192628.1 samtools variation 337109 337109 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; non-synonymous GL192628.1 samtools variation 337724 337724 . . . alleles " G A"; frequencies " 0.720930232558139 0.27906976744186"; depth 43 ; unknown ; non-synonymous GL192628.1 samtools variation 337819 337819 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 50 ; unknown ; synonymous GL192628.1 samtools variation 338217 338217 . . . alleles " C A"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; non-synonymous GL192628.1 samtools variation 339651 339651 . . . alleles " G T"; frequencies " 0.757575757575758 0.242424242424242"; depth 66 ; unknown ; non-synonymous GL192628.1 samtools variation 340930 340930 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 68 ; unknown ; synonymous GL192628.1 samtools variation 341602 341602 . . . alleles " G C"; frequencies " 0.604166666666667 0.395833333333333"; depth 48 ; unknown ; synonymous GL192628.1 samtools variation 342582 342582 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; synonymous GL192628.1 samtools variation 344754 344754 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 16 ; known ; synonymous GL192628.1 samtools variation 346720 346720 . . . alleles " T A"; frequencies " 0.4 0.6"; depth 115 ; known ; N/A GL192628.1 samtools variation 346768 346768 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 96 ; known ; N/A GL192628.1 samtools variation 347166 347166 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 54 ; known ; N/A GL192628.1 samtools variation 347307 347307 . . . alleles " G A"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; known ; N/A GL192628.1 samtools variation 363087 363087 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192628.1 samtools variation 363347 363347 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192628.1 samtools variation 364999 364999 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL192628.1 samtools variation 373457 373457 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192628.1 samtools variation 381049 381049 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192628.1 samtools variation 382017 382017 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 30 ; known ; N/A GL192628.1 samtools variation 383184 383184 . . . alleles " A T"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL192628.1 samtools variation 384770 384770 . . . alleles " T A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192628.1 samtools variation 418524 418524 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192628.1 samtools variation 425888 425888 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192628.1 samtools variation 452712 452712 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 75 ; known ; synonymous GL192628.1 samtools variation 675490 675490 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192628.1 samtools variation 692617 692617 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192628.1 samtools variation 704565 704565 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL192628.1 samtools variation 712437 712437 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL192628.1 samtools variation 719307 719307 . . . alleles " C T"; frequencies " 0.327731092436975 0.672268907563025"; depth 119 ; known ; non-synonymous GL192628.1 samtools variation 719356 719356 . . . alleles " C T"; frequencies " 0.635416666666667 0.364583333333333"; depth 96 ; known ; synonymous GL192628.1 samtools variation 772448 772448 . . . alleles " G C"; frequencies " 0.205882352941176 0.794117647058823"; depth 68 ; known ; non-synonymous GL192628.1 samtools variation 772543 772543 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 55 ; known ; non-synonymous GL192628.1 samtools variation 800204 800204 . . . alleles " C T"; frequencies " 0.218181818181818 0.781818181818182"; depth 55 ; known ; non-synonymous GL192628.1 samtools variation 857124 857124 . . . alleles " A G"; frequencies " 0.783687943262411 0.216312056737589"; depth 282 ; known ; N/A GL192628.1 samtools variation 1014287 1014287 . . . alleles " G A"; frequencies " 0.482300884955752 0.517699115044248"; depth 226 ; unknown ; non-synonymous GL192628.1 samtools variation 1149846 1149846 . . . alleles " C T"; frequencies " 0.412698412698413 0.587301587301587"; depth 63 ; known ; non-synonymous GL192628.1 samtools variation 1150587 1150587 . . . alleles " C T"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192628.1 samtools variation 1152568 1152568 . . . alleles " G C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192628.1 samtools variation 1152719 1152719 . . . alleles " C T"; frequencies " 0.725 0.275"; depth 120 ; unknown ; synonymous GL192628.1 samtools variation 1152886 1152886 . . . alleles " C T"; frequencies " 0.675 0.325"; depth 40 ; known ; N/A GL192628.1 samtools variation 1153768 1153768 . . . alleles " T C"; frequencies " 0.314285714285714 0.685714285714286"; depth 35 ; known ; N/A GL192628.1 samtools variation 1155816 1155816 . . . alleles " T C"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; known ; N/A GL192628.1 samtools variation 1157321 1157321 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 88 ; known ; synonymous GL192628.1 samtools variation 1159069 1159069 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192628.1 samtools variation 1280320 1280320 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192628.1 samtools variation 1281062 1281062 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192628.1 samtools variation 1515299 1515299 . . . alleles " C T"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192628.1 samtools variation 1684639 1684639 . . . alleles " G A"; frequencies " 0.775923718712753 0.224076281287247"; depth 839 ; unknown ; N/A GL192628.1 samtools variation 1694909 1694909 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192628.1 samtools variation 1694997 1694997 . . . alleles " C A"; frequencies " 0.684210526315789 0.263157894736842"; depth 19 ; known ; N/A GL192628.1 samtools variation 1695008 1695008 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192628.1 samtools variation 1695469 1695469 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL192628.1 samtools variation 1695509 1695509 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192628.1 samtools variation 1695556 1695556 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192628.1 samtools variation 1695567 1695567 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192628.1 samtools variation 1696052 1696052 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; known ; N/A GL192628.1 samtools variation 1696382 1696382 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192628.1 samtools variation 1696676 1696676 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192628.1 samtools variation 1696864 1696864 . . . alleles " G A"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; known ; N/A GL192628.1 samtools variation 1696901 1696901 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192628.1 samtools variation 1696936 1696936 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 32 ; known ; N/A GL192628.1 samtools variation 1697332 1697332 . . . alleles " T C"; frequencies " 0.48 0.52"; depth 25 ; known ; N/A GL192628.1 samtools variation 1697644 1697644 . . . alleles " A G"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; known ; N/A GL192628.1 samtools variation 1697696 1697696 . . . alleles " A G"; frequencies " 0.372549019607843 0.627450980392157"; depth 51 ; known ; N/A GL192628.1 samtools variation 1699154 1699154 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 300 ; known ; synonymous GL192628.1 samtools variation 1699189 1699189 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 96 ; known ; non-synonymous GL192628.1 samtools variation 1700184 1700184 . . . alleles " C T"; frequencies " 0.756756756756757 0.243243243243243"; depth 629 ; unknown ; non-synonymous GL192628.1 samtools variation 1701232 1701232 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192628.1 samtools variation 1703758 1703758 . . . alleles " G T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192628.1 samtools variation 1704201 1704201 . . . alleles " A T"; frequencies " 0.638297872340426 0.361702127659574"; depth 47 ; known ; N/A GL192628.1 samtools variation 1705050 1705050 . . . alleles " G A"; frequencies " 0.454987834549878 0.54014598540146"; depth 411 ; known ; synonymous GL192628.1 samtools variation 1718605 1718605 . . . alleles " C G"; frequencies " 0.625 0.375"; depth 56 ; known ; N/A GL192628.1 samtools variation 1744776 1744776 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192628.1 samtools variation 1771881 1771881 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192629.1 samtools variation 1072835 1072835 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; synonymous GL192629.1 samtools variation 1076572 1076572 . . . alleles " A G"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; non-synonymous GL192629.1 samtools variation 1078024 1078024 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192629.1 samtools variation 1094295 1094295 . . . alleles " T G"; frequencies " 0.432098765432099 0.567901234567901"; depth 81 ; known ; N/A GL192629.1 samtools variation 1119642 1119642 . . . alleles " G T"; frequencies " 0.303030303030303 0.696969696969697"; depth 33 ; known ; N/A GL192629.1 samtools variation 1126321 1126321 . . . alleles " A G"; frequencies " 0.519480519480519 0.480519480519481"; depth 77 ; unknown ; N/A GL192629.1 samtools variation 1126996 1126996 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 56 ; known ; N/A GL192629.1 samtools variation 1127078 1127078 . . . alleles " C A"; frequencies " 0.375 0.625"; depth 32 ; known ; N/A GL192629.1 samtools variation 1127105 1127105 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 35 ; known ; N/A GL192629.1 samtools variation 1128271 1128271 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192629.1 samtools variation 1268266 1268266 . . . alleles " G C"; frequencies " 0.618320610687023 0.381679389312977"; depth 131 ; known ; synonymous GL192629.1 samtools variation 1268893 1268893 . . . alleles " C T"; frequencies " 0.78030303030303 0.21969696969697"; depth 132 ; known ; synonymous GL192629.1 samtools variation 1273457 1273457 . . . alleles " G A"; frequencies " 0.352272727272727 0.647727272727273"; depth 88 ; known ; N/A GL192629.1 samtools variation 1273487 1273487 . . . alleles " A C"; frequencies " 0.377777777777778 0.622222222222222"; depth 90 ; known ; N/A GL192629.1 samtools variation 1274446 1274446 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL192630.1 samtools variation 1246645 1246645 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192630.1 samtools variation 1246865 1246865 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192630.1 samtools variation 1247031 1247031 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192630.1 samtools variation 1259200 1259200 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 39 ; known ; synonymous GL192630.1 samtools variation 1342598 1342598 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192630.1 samtools variation 1581978 1581978 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192630.1 samtools variation 1586507 1586507 . . . alleles " T C"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL192630.1 samtools variation 1607998 1607998 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192631.1 samtools variation 431876 431876 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 33 ; known ; N/A GL192631.1 samtools variation 444085 444085 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192631.1 samtools variation 447300 447300 . . . alleles " T C"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; known ; N/A GL192631.1 samtools variation 976227 976227 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; unknown ; non-synonymous GL192631.1 samtools variation 1017117 1017117 . . . alleles " C T"; frequencies " 0.676470588235294 0.323529411764706"; depth 102 ; unknown ; N/A GL192631.1 samtools variation 1017330 1017330 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192631.1 samtools variation 1017638 1017638 . . . alleles " A G"; frequencies " 0.677777777777778 0.311111111111111"; depth 90 ; known ; N/A GL192631.1 samtools variation 1020621 1020621 . . . alleles " A G"; frequencies " 0.519480519480519 0.480519480519481"; depth 77 ; known ; N/A GL192631.1 samtools variation 1021786 1021786 . . . alleles " A G"; frequencies " 0.4984375 0.5015625"; depth 640 ; known ; synonymous GL192631.1 samtools variation 1022192 1022192 . . . alleles " G A"; frequencies " 0.529761904761905 0.470238095238095"; depth 168 ; known ; N/A GL192631.1 samtools variation 1022579 1022579 . . . alleles " T C"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL192631.1 samtools variation 1023472 1023472 . . . alleles " T G"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; known ; N/A GL192631.1 samtools variation 1028832 1028832 . . . alleles " C T"; frequencies " 0.485714285714286 0.514285714285714"; depth 70 ; known ; N/A GL192631.1 samtools variation 1114014 1114014 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192631.1 samtools variation 1280316 1280316 . . . alleles " T C"; frequencies " 0.59375 0.40625"; depth 64 ; unknown ; N/A GL192631.1 samtools variation 1280506 1280506 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 102 ; unknown ; non-synonymous GL192631.1 samtools variation 1280532 1280532 . . . alleles " A G"; frequencies " 0.720930232558139 0.27906976744186"; depth 86 ; unknown ; synonymous GL192631.1 samtools variation 1280573 1280573 . . . alleles " G C"; frequencies " 0.712328767123288 0.287671232876712"; depth 73 ; unknown ; non-synonymous GL192631.1 samtools variation 1282472 1282472 . . . alleles " G C"; frequencies " 0.644787644787645 0.355212355212355"; depth 259 ; unknown ; non-synonymous GL192631.1 samtools variation 1292162 1292162 . . . alleles " T C"; frequencies " 0.685393258426966 0.314606741573034"; depth 89 ; unknown ; N/A GL192631.1 samtools variation 1292180 1292180 . . . alleles " T C"; frequencies " 0.43859649122807 0.56140350877193"; depth 57 ; unknown ; N/A GL192632.1 samtools variation 495687 495687 . . . alleles " A G"; frequencies " 0.464052287581699 0.529411764705882"; depth 153 ; known ; non-synonymous GL192632.1 samtools variation 505283 505283 . . . alleles " G C"; frequencies " 0.782828282828283 0.217171717171717"; depth 198 ; known ; synonymous GL192632.1 samtools variation 507088 507088 . . . alleles " A G"; frequencies " 0.477064220183486 0.522935779816514"; depth 109 ; known ; N/A GL192632.1 samtools variation 508336 508336 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192632.1 samtools variation 531961 531961 . . . alleles " T C"; frequencies " 0.594202898550725 0.405797101449275"; depth 69 ; known ; N/A GL192632.1 samtools variation 533679 533679 . . . alleles " G T"; frequencies " 0.552631578947368 0.447368421052632"; depth 76 ; known ; N/A GL192632.1 samtools variation 541762 541762 . . . alleles " G C"; frequencies " 0.555555555555556 0.444444444444444"; depth 189 ; known ; N/A GL192632.1 samtools variation 544240 544240 . . . alleles " G A"; frequencies " 0.685245901639344 0.314754098360656"; depth 305 ; unknown ; N/A GL192632.1 samtools variation 544245 544245 . . . alleles " A G"; frequencies " 0.673139158576052 0.326860841423948"; depth 309 ; unknown ; N/A GL192632.1 samtools variation 544365 544365 . . . alleles " G A"; frequencies " 0.437125748502994 0.562874251497006"; depth 167 ; known ; N/A GL192632.1 samtools variation 545610 545610 . . . alleles " T C"; frequencies " 0.780487804878049 0.219512195121951"; depth 82 ; unknown ; N/A GL192632.1 samtools variation 546419 546419 . . . alleles " G T"; frequencies " 0.510309278350515 0.489690721649485"; depth 194 ; known ; N/A GL192632.1 samtools variation 546698 546698 . . . alleles " G C"; frequencies " 0.329545454545455 0.670454545454545"; depth 88 ; known ; N/A GL192632.1 samtools variation 547389 547389 . . . alleles " A G"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; known ; N/A GL192632.1 samtools variation 557010 557010 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192632.1 samtools variation 557415 557415 . . . alleles " A G"; frequencies " 0.517857142857143 0.482142857142857"; depth 56 ; known ; N/A GL192632.1 samtools variation 644274 644274 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; synonymous GL192632.1 samtools variation 646590 646590 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192632.1 samtools variation 666088 666088 . . . alleles " G T"; frequencies " 0.369565217391304 0.630434782608696"; depth 46 ; known ; N/A GL192632.1 samtools variation 838148 838148 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192632.1 samtools variation 840424 840424 . . . alleles " T C"; frequencies " 0.718 0.272"; depth 500 ; unknown ; N/A GL192632.1 samtools variation 840674 840674 . . . alleles " A G"; frequencies " 0.793333333333333 0.206666666666667"; depth 900 ; unknown ; N/A GL192632.1 samtools variation 843778 843778 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192632.1 samtools variation 859563 859563 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192632.1 samtools variation 862117 862117 . . . alleles " G T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192632.1 samtools variation 878930 878930 . . . alleles " C G"; frequencies " 0.676691729323308 0.323308270676692"; depth 133 ; unknown ; N/A GL192632.1 samtools variation 885707 885707 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192632.1 samtools variation 885845 885845 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192632.1 samtools variation 968203 968203 . . . alleles " C A"; frequencies " 0.771929824561403 0.219298245614035"; depth 114 ; unknown ; non-synonymous GL192632.1 samtools variation 1087264 1087264 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; synonymous GL192632.1 samtools variation 1087280 1087280 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; non-synonymous GL192632.1 samtools variation 1091231 1091231 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; synonymous GL192632.1 samtools variation 1091243 1091243 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; synonymous GL192632.1 samtools variation 1092086 1092086 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; non-synonymous GL192632.1 samtools variation 1109632 1109632 . . . alleles " T C"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; synonymous GL192632.1 samtools variation 1114468 1114468 . . . alleles " C T"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; known ; synonymous GL192632.1 samtools variation 1191343 1191343 . . . alleles " A G"; frequencies " 0.541666666666667 0.458333333333333"; depth 48 ; known ; synonymous GL192632.1 samtools variation 1191409 1191409 . . . alleles " A G"; frequencies " 0.517647058823529 0.482352941176471"; depth 85 ; known ; synonymous GL192632.1 samtools variation 1308068 1308068 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192632.1 samtools variation 1310962 1310962 . . . alleles " A G"; frequencies " 0.774647887323944 0.225352112676056"; depth 71 ; unknown ; N/A GL192632.1 samtools variation 1311001 1311001 . . . alleles " T C"; frequencies " 0.66304347826087 0.33695652173913"; depth 92 ; unknown ; N/A GL192632.1 samtools variation 1312793 1312793 . . . alleles " A G"; frequencies " 0.51219512195122 0.48780487804878"; depth 41 ; unknown ; N/A GL192632.1 samtools variation 1502601 1502601 . . . alleles " A C"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; N/A GL192632.1 samtools variation 1502704 1502704 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 25 ; unknown ; N/A GL192632.1 samtools variation 1502791 1502791 . . . alleles " G A"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; unknown ; N/A GL192632.1 samtools variation 1503059 1503059 . . . alleles " A C"; frequencies " 0.253731343283582 0.746268656716418"; depth 67 ; unknown ; N/A GL192632.1 samtools variation 1544619 1544619 . . . alleles " G C"; frequencies " 0.425925925925926 0.574074074074074"; depth 54 ; unknown ; synonymous GL192632.1 samtools variation 1622739 1622739 . . . alleles " G A"; frequencies " 0.587301587301587 0.412698412698413"; depth 63 ; unknown ; N/A GL192632.1 samtools variation 1622742 1622742 . . . alleles " C T"; frequencies " 0.567567567567568 0.432432432432432"; depth 74 ; unknown ; N/A GL192632.1 samtools variation 1629298 1629298 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192632.1 samtools variation 1630653 1630653 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 105 ; unknown ; N/A GL192632.1 samtools variation 1632120 1632120 . . . alleles " T C"; frequencies " 0.563636363636364 0.436363636363636"; depth 55 ; unknown ; N/A GL192632.1 samtools variation 1632247 1632247 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192632.1 samtools variation 1632279 1632279 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192632.1 samtools variation 1633850 1633850 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 30 ; unknown ; N/A GL192632.1 samtools variation 1634204 1634204 . . . alleles " G T"; frequencies " 0.641791044776119 0.358208955223881"; depth 67 ; unknown ; N/A GL192632.1 samtools variation 1635466 1635466 . . . alleles " T G"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; non-synonymous GL192632.1 samtools variation 1637638 1637638 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192632.1 samtools variation 1638548 1638548 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; non-synonymous GL192632.1 samtools variation 1706789 1706789 . . . alleles " C A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192632.1 samtools variation 1710729 1710729 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; unknown ; N/A GL192632.1 samtools variation 1711325 1711325 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192632.1 samtools variation 1711374 1711374 . . . alleles " C G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192633.1 samtools variation 337478 337478 . . . alleles " A G"; frequencies " 0.702127659574468 0.297872340425532"; depth 47 ; unknown ; synonymous GL192633.1 samtools variation 338396 338396 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; synonymous GL192633.1 samtools variation 373155 373155 . . . alleles " A G"; frequencies " 0.735849056603774 0.264150943396226"; depth 53 ; unknown ; N/A GL192633.1 samtools variation 373193 373193 . . . alleles " T C"; frequencies " 0.697674418604651 0.302325581395349"; depth 43 ; unknown ; N/A GL192633.1 samtools variation 680097 680097 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192633.1 samtools variation 692133 692133 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192633.1 samtools variation 1453811 1453811 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192633.1 samtools variation 1542520 1542520 . . . alleles " A G"; frequencies " 0.308943089430894 0.691056910569106"; depth 123 ; known ; N/A GL192633.1 samtools variation 1542672 1542672 . . . alleles " C T"; frequencies " 0.761627906976744 0.238372093023256"; depth 172 ; unknown ; N/A GL192634.1 samtools variation 177724 177724 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192634.1 samtools variation 194585 194585 . . . alleles " C G"; frequencies " 0.347826086956522 0.652173913043478"; depth 46 ; known ; N/A GL192634.1 samtools variation 194607 194607 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 42 ; known ; N/A GL192634.1 samtools variation 219870 219870 . . . alleles " C T"; frequencies " 0.604609929078014 0.395390070921986"; depth 564 ; unknown ; synonymous GL192634.1 samtools variation 227351 227351 . . . alleles " G A"; frequencies " 0.756906077348066 0.243093922651934"; depth 181 ; unknown ; N/A GL192634.1 samtools variation 228990 228990 . . . alleles " C T"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL192634.1 samtools variation 229211 229211 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 35 ; unknown ; N/A GL192634.1 samtools variation 234104 234104 . . . alleles " A G"; frequencies " 0.586235489220564 0.411276948590381"; depth 1206 ; unknown ; synonymous GL192634.1 samtools variation 255267 255267 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL192634.1 samtools variation 260001 260001 . . . alleles " T C"; frequencies " 0.631067961165049 0.368932038834951"; depth 103 ; known ; non-synonymous GL192634.1 samtools variation 263833 263833 . . . alleles " G A"; frequencies " 0.629427792915531 0.370572207084469"; depth 367 ; known ; N/A GL192634.1 samtools variation 263932 263932 . . . alleles " C T"; frequencies " 0.205882352941176 0.794117647058823"; depth 306 ; known ; non-synonymous GL192634.1 samtools variation 264341 264341 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192634.1 samtools variation 264387 264387 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192634.1 samtools variation 638119 638119 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL192634.1 samtools variation 640598 640598 . . . alleles " G A"; frequencies " 0.794871794871795 0.205128205128205"; depth 117 ; unknown ; N/A GL192634.1 samtools variation 641435 641435 . . . alleles " T C"; frequencies " 0.707547169811321 0.292452830188679"; depth 954 ; unknown ; N/A GL192634.1 samtools variation 670512 670512 . . . alleles " T C"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL192634.1 samtools variation 670521 670521 . . . alleles " A G"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL192634.1 samtools variation 675302 675302 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192634.1 samtools variation 687465 687465 . . . alleles " T C"; frequencies " 0.645293315143247 0.354706684856753"; depth 733 ; unknown ; non-synonymous GL192634.1 samtools variation 710661 710661 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; synonymous GL192634.1 samtools variation 775663 775663 . . . alleles " C T"; frequencies " 0.752100840336134 0.247899159663866"; depth 238 ; unknown ; N/A GL192634.1 samtools variation 791128 791128 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192634.1 samtools variation 792148 792148 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192634.1 samtools variation 793385 793385 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192634.1 samtools variation 793802 793802 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192634.1 samtools variation 895164 895164 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192634.1 samtools variation 1257918 1257918 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192634.1 samtools variation 1422222 1422222 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; unknown ; synonymous GL192634.1 samtools variation 1734670 1734670 . . . alleles " A T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; non-synonymous GL192634.1 samtools variation 1735784 1735784 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; synonymous GL192635.1 samtools variation 974091 974091 . . . alleles " T G"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; N/A GL192635.1 samtools variation 974257 974257 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; known ; N/A GL192635.1 samtools variation 977976 977976 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL192635.1 samtools variation 991773 991773 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; synonymous GL192635.1 samtools variation 991783 991783 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; non-synonymous GL192635.1 samtools variation 995784 995784 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; synonymous GL192635.1 samtools variation 1042874 1042874 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; synonymous GL192636.1 samtools variation 965 965 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192636.1 samtools variation 1237 1237 . . . alleles " A T"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL192636.1 samtools variation 547537 547537 . . . alleles " A G"; frequencies " 0.780487804878049 0.219512195121951"; depth 205 ; unknown ; synonymous GL192636.1 samtools variation 557361 557361 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192636.1 samtools variation 569987 569987 . . . alleles " G C"; frequencies " 0.641509433962264 0.358490566037736"; depth 53 ; unknown ; N/A GL192636.1 samtools variation 570058 570058 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; N/A GL192636.1 samtools variation 1639590 1639590 . . . alleles " G A"; frequencies " 0.60253164556962 0.39746835443038"; depth 395 ; unknown ; N/A GL192636.1 samtools variation 1664146 1664146 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192637.1 samtools variation 1430190 1430190 . . . alleles " G A"; frequencies " 0.218673218673219 0.781326781326781"; depth 407 ; unknown ; synonymous GL192637.1 samtools variation 1750465 1750465 . . . alleles " A T"; frequencies " 0.405063291139241 0.594936708860759"; depth 395 ; known ; N/A GL192637.1 samtools variation 1755613 1755613 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192640.1 samtools variation 160027 160027 . . . alleles " T C"; frequencies " 0.210526315789474 0.789473684210526"; depth 38 ; known ; N/A GL192640.1 samtools variation 163800 163800 . . . alleles " C G"; frequencies " 0.55 0.45"; depth 40 ; known ; N/A GL192640.1 samtools variation 164916 164916 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192640.1 samtools variation 172282 172282 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192640.1 samtools variation 174858 174858 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192640.1 samtools variation 174867 174867 . . . alleles " T G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192640.1 samtools variation 186350 186350 . . . alleles " C G"; frequencies " 0.36144578313253 0.63855421686747"; depth 83 ; known ; non-synonymous GL192640.1 samtools variation 191460 191460 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192640.1 samtools variation 191877 191877 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192640.1 samtools variation 192667 192667 . . . alleles " A G"; frequencies " 0.577235772357724 0.422764227642276"; depth 123 ; unknown ; N/A GL192640.1 samtools variation 192916 192916 . . . alleles " C T"; frequencies " 0.725 0.275"; depth 120 ; unknown ; N/A GL192640.1 samtools variation 192936 192936 . . . alleles " C T"; frequencies " 0.740384615384615 0.259615384615385"; depth 104 ; unknown ; N/A GL192640.1 samtools variation 193705 193705 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 60 ; known ; N/A GL192640.1 samtools variation 193721 193721 . . . alleles " A G"; frequencies " 0.339622641509434 0.660377358490566"; depth 53 ; known ; N/A GL192640.1 samtools variation 194146 194146 . . . alleles " A G"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL192640.1 samtools variation 198609 198609 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192640.1 samtools variation 222970 222970 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192640.1 samtools variation 227406 227406 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192640.1 samtools variation 228096 228096 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192640.1 samtools variation 232008 232008 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL192640.1 samtools variation 235003 235003 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL192640.1 samtools variation 243980 243980 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL192640.1 samtools variation 244051 244051 . . . alleles " T G"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192640.1 samtools variation 247676 247676 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192640.1 samtools variation 252414 252414 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192640.1 samtools variation 258940 258940 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192640.1 samtools variation 259843 259843 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192640.1 samtools variation 260404 260404 . . . alleles " A G"; frequencies " 0.444849589790337 0.555150410209663"; depth 1097 ; known ; synonymous GL192640.1 samtools variation 265913 265913 . . . alleles " G A"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL192640.1 samtools variation 266792 266792 . . . alleles " G A"; frequencies " 0.795454545454545 0.204545454545455"; depth 88 ; unknown ; N/A GL192640.1 samtools variation 350829 350829 . . . alleles " T A"; frequencies " 0.410714285714286 0.589285714285714"; depth 56 ; known ; N/A GL192640.1 samtools variation 498419 498419 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192640.1 samtools variation 555342 555342 . . . alleles " A G"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; unknown ; N/A GL192640.1 samtools variation 556047 556047 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192640.1 samtools variation 557515 557515 . . . alleles " G A"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; N/A GL192640.1 samtools variation 557787 557787 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192640.1 samtools variation 666080 666080 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192640.1 samtools variation 666564 666564 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 44 ; unknown ; non-synonymous GL192640.1 samtools variation 672646 672646 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192640.1 samtools variation 673357 673357 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 48 ; unknown ; non-synonymous GL192640.1 samtools variation 723244 723244 . . . alleles " T C"; frequencies " 0.576470588235294 0.423529411764706"; depth 170 ; unknown ; synonymous GL192640.1 samtools variation 797018 797018 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 60 ; unknown ; N/A GL192640.1 samtools variation 808813 808813 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 15 ; unknown ; synonymous GL192640.1 samtools variation 847595 847595 . . . alleles " A C"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192640.1 samtools variation 847756 847756 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192640.1 samtools variation 850468 850468 . . . alleles " G A"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL192640.1 samtools variation 1019812 1019812 . . . alleles " C T"; frequencies " 0.466666666666667 0.466666666666667"; depth 15 ; unknown ; non-synonymous GL192640.1 samtools variation 1027596 1027596 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192640.1 samtools variation 1053796 1053796 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192640.1 samtools variation 1053862 1053862 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192640.1 samtools variation 1054090 1054090 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192640.1 samtools variation 1063449 1063449 . . . alleles " C T"; frequencies " 0.703488372093023 0.296511627906977"; depth 172 ; unknown ; N/A GL192640.1 samtools variation 1064862 1064862 . . . alleles " T G"; frequencies " 0.517766497461929 0.477157360406091"; depth 197 ; unknown ; N/A GL192640.1 samtools variation 1067404 1067404 . . . alleles " C G"; frequencies " 0.576754385964912 0.423245614035088"; depth 456 ; unknown ; N/A GL192640.1 samtools variation 1067967 1067967 . . . alleles " G C"; frequencies " 0.573643410852713 0.426356589147287"; depth 645 ; unknown ; N/A GL192640.1 samtools variation 1068001 1068001 . . . alleles " C T"; frequencies " 0.578189300411523 0.419753086419753"; depth 486 ; unknown ; N/A GL192640.1 samtools variation 1068239 1068239 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 48 ; unknown ; N/A GL192640.1 samtools variation 1068647 1068647 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 288 ; unknown ; synonymous GL192640.1 samtools variation 1068812 1068812 . . . alleles " C T"; frequencies " 0.566502463054187 0.433497536945813"; depth 203 ; unknown ; non-synonymous GL192640.1 samtools variation 1069708 1069708 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192640.1 samtools variation 1070718 1070718 . . . alleles " T G"; frequencies " 0.506944444444444 0.493055555555556"; depth 144 ; unknown ; synonymous GL192640.1 samtools variation 1086630 1086630 . . . alleles " C G"; frequencies " 0.644957983193277 0.355042016806723"; depth 476 ; unknown ; synonymous GL192640.1 samtools variation 1086666 1086666 . . . alleles " T C"; frequencies " 0.566315789473684 0.433684210526316"; depth 475 ; unknown ; synonymous GL192640.1 samtools variation 1089512 1089512 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192640.1 samtools variation 1094886 1094886 . . . alleles " T G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; synonymous GL192640.1 samtools variation 1095042 1095042 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; synonymous GL192640.1 samtools variation 1099381 1099381 . . . alleles " G A"; frequencies " 0.382352941176471 0.617647058823529"; depth 34 ; unknown ; N/A GL192640.1 samtools variation 1105539 1105539 . . . alleles " C T"; frequencies " 0.465863453815261 0.534136546184739"; depth 249 ; unknown ; synonymous GL192640.1 samtools variation 1105602 1105602 . . . alleles " A G"; frequencies " 0.472972972972973 0.527027027027027"; depth 222 ; unknown ; synonymous GL192640.1 samtools variation 1106333 1106333 . . . alleles " C G"; frequencies " 0.511494252873563 0.488505747126437"; depth 174 ; unknown ; synonymous GL192640.1 samtools variation 1108735 1108735 . . . alleles " C T"; frequencies " 0.594827586206897 0.405172413793103"; depth 116 ; unknown ; non-synonymous GL192640.1 samtools variation 1112824 1112824 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; non-synonymous GL192640.1 samtools variation 1289649 1289649 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL192640.1 samtools variation 1308432 1308432 . . . alleles " C T"; frequencies " 0.648148148148148 0.351851851851852"; depth 54 ; unknown ; synonymous GL192640.1 samtools variation 1329912 1329912 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; synonymous GL192640.1 samtools variation 1455298 1455298 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192640.1 samtools variation 1505452 1505452 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 51 ; unknown ; N/A GL192640.1 samtools variation 1507381 1507381 . . . alleles " A G"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; synonymous GL192640.1 samtools variation 1516794 1516794 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; synonymous GL192641.1 samtools variation 698759 698759 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; synonymous GL192641.1 samtools variation 1443253 1443253 . . . alleles " T G"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; N/A GL192641.1 samtools variation 1443284 1443284 . . . alleles " G A"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL192641.1 samtools variation 1443684 1443684 . . . alleles " T G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192641.1 samtools variation 1443927 1443927 . . . alleles " C T"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; N/A GL192641.1 samtools variation 1446556 1446556 . . . alleles " G T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192641.1 samtools variation 1453859 1453859 . . . alleles " C A"; frequencies " 0.753846153846154 0.246153846153846"; depth 65 ; unknown ; N/A GL192641.1 samtools variation 1453933 1453933 . . . alleles " G C"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL192641.1 samtools variation 1455179 1455179 . . . alleles " A C"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL192641.1 samtools variation 1455223 1455223 . . . alleles " A G"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL192641.1 samtools variation 1456551 1456551 . . . alleles " C G"; frequencies " 0.790322580645161 0.209677419354839"; depth 62 ; unknown ; N/A GL192641.1 samtools variation 1457953 1457953 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; N/A GL192641.1 samtools variation 1459328 1459328 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192641.1 samtools variation 1463724 1463724 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 48 ; unknown ; N/A GL192641.1 samtools variation 1463796 1463796 . . . alleles " A G"; frequencies " 0.701754385964912 0.298245614035088"; depth 57 ; unknown ; N/A GL192641.1 samtools variation 1464554 1464554 . . . alleles " T C"; frequencies " 0.782258064516129 0.217741935483871"; depth 124 ; unknown ; N/A GL192641.1 samtools variation 1464759 1464759 . . . alleles " G C"; frequencies " 0.618217054263566 0.381782945736434"; depth 516 ; unknown ; N/A GL192641.1 samtools variation 1465085 1465085 . . . alleles " T G"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL192641.1 samtools variation 1465948 1465948 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; N/A GL192641.1 samtools variation 1466446 1466446 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 25 ; unknown ; N/A GL192641.1 samtools variation 1470353 1470353 . . . alleles " G C"; frequencies " 0.695652173913043 0.304347826086957"; depth 69 ; unknown ; N/A GL192641.1 samtools variation 1470935 1470935 . . . alleles " G A"; frequencies " 0.222222222222222 0.777777777777778"; depth 63 ; unknown ; N/A GL192641.1 samtools variation 1471544 1471544 . . . alleles " C T"; frequencies " 0.756410256410256 0.243589743589744"; depth 78 ; unknown ; N/A GL192641.1 samtools variation 1471652 1471652 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 110 ; unknown ; N/A GL192641.1 samtools variation 1476701 1476701 . . . alleles " G T"; frequencies " 0.588235294117647 0.411764705882353"; depth 51 ; unknown ; N/A GL192641.1 samtools variation 1477420 1477420 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192641.1 samtools variation 1477485 1477485 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL192641.1 samtools variation 1477536 1477536 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; unknown ; N/A GL192641.1 samtools variation 1478947 1478947 . . . alleles " A C"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192641.1 samtools variation 1479524 1479524 . . . alleles " T A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192641.1 samtools variation 1480234 1480234 . . . alleles " A T"; frequencies " 0.372093023255814 0.627906976744186"; depth 43 ; unknown ; N/A GL192641.1 samtools variation 1480307 1480307 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 36 ; unknown ; N/A GL192641.1 samtools variation 1480820 1480820 . . . alleles " A T"; frequencies " 0.517857142857143 0.482142857142857"; depth 56 ; unknown ; N/A GL192641.1 samtools variation 1480880 1480880 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 32 ; unknown ; N/A GL192641.1 samtools variation 1481311 1481311 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL192641.1 samtools variation 1481332 1481332 . . . alleles " C T"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; unknown ; N/A GL192641.1 samtools variation 1482699 1482699 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 54 ; unknown ; N/A GL192641.1 samtools variation 1482708 1482708 . . . alleles " G A"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL192641.1 samtools variation 1483071 1483071 . . . alleles " T C"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; N/A GL192641.1 samtools variation 1483097 1483097 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 49 ; unknown ; N/A GL192641.1 samtools variation 1483332 1483332 . . . alleles " G A"; frequencies " 0.486772486772487 0.513227513227513"; depth 378 ; unknown ; N/A GL192641.1 samtools variation 1483380 1483380 . . . alleles " A G"; frequencies " 0.471563981042654 0.528436018957346"; depth 422 ; unknown ; N/A GL192642.1 samtools variation 1344059 1344059 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 63 ; known ; synonymous GL192642.1 samtools variation 1398157 1398157 . . . alleles " T C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192642.1 samtools variation 1398172 1398172 . . . alleles " A G"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; known ; N/A GL192643.1 samtools variation 514355 514355 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL192643.1 samtools variation 517441 517441 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL192643.1 samtools variation 531556 531556 . . . alleles " T C"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192643.1 samtools variation 532157 532157 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 49 ; unknown ; N/A GL192643.1 samtools variation 533166 533166 . . . alleles " G T"; frequencies " 0.690391459074733 0.309608540925267"; depth 281 ; unknown ; N/A GL192643.1 samtools variation 534187 534187 . . . alleles " A G"; frequencies " 0.796511627906977 0.203488372093023"; depth 172 ; unknown ; N/A GL192643.1 samtools variation 748986 748986 . . . alleles " C T"; frequencies " 0.581196581196581 0.418803418803419"; depth 117 ; known ; N/A GL192643.1 samtools variation 748991 748991 . . . alleles " T C"; frequencies " 0.597938144329897 0.402061855670103"; depth 97 ; known ; N/A GL192643.1 samtools variation 773473 773473 . . . alleles " G A"; frequencies " 0.7875 0.2125"; depth 80 ; unknown ; synonymous GL192643.1 samtools variation 788933 788933 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; synonymous GL192643.1 samtools variation 791675 791675 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192643.1 samtools variation 797850 797850 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192643.1 samtools variation 798071 798071 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192643.1 samtools variation 798186 798186 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192643.1 samtools variation 891777 891777 . . . alleles " G A"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; N/A GL192643.1 samtools variation 1048504 1048504 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 48 ; unknown ; N/A GL192643.1 samtools variation 1049882 1049882 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192643.1 samtools variation 1050425 1050425 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL192643.1 samtools variation 1050562 1050562 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192643.1 samtools variation 1270787 1270787 . . . alleles " T C"; frequencies " 0.376068376068376 0.623931623931624"; depth 117 ; known ; N/A GL192645.1 samtools variation 977885 977885 . . . alleles " G A"; frequencies " 0.314285714285714 0.685714285714286"; depth 35 ; known ; synonymous GL192645.1 samtools variation 978081 978081 . . . alleles " A G"; frequencies " 0.325842696629214 0.674157303370786"; depth 89 ; known ; non-synonymous GL192645.1 samtools variation 978343 978343 . . . alleles " C T"; frequencies " 0.423423423423423 0.576576576576577"; depth 111 ; known ; non-synonymous GL192645.1 samtools variation 979001 979001 . . . alleles " G A"; frequencies " 0.430379746835443 0.569620253164557"; depth 79 ; known ; synonymous GL192645.1 samtools variation 980048 980048 . . . alleles " T C"; frequencies " 0.528301886792453 0.471698113207547"; depth 106 ; known ; synonymous GL192645.1 samtools variation 980291 980291 . . . alleles " C T"; frequencies " 0.603960396039604 0.396039603960396"; depth 101 ; known ; synonymous GL192645.1 samtools variation 981031 981031 . . . alleles " T A"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; known ; non-synonymous GL192645.1 samtools variation 981507 981507 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 82 ; known ; non-synonymous GL192645.1 samtools variation 981636 981636 . . . alleles " G A"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; known ; non-synonymous GL192645.1 samtools variation 982053 982053 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; non-synonymous GL192645.1 samtools variation 985350 985350 . . . alleles " A G"; frequencies " 0.566037735849057 0.433962264150943"; depth 106 ; unknown ; non-synonymous GL192645.1 samtools variation 987361 987361 . . . alleles " A C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192645.1 samtools variation 990794 990794 . . . alleles " T G"; frequencies " 0.519480519480519 0.480519480519481"; depth 77 ; unknown ; non-synonymous GL192645.1 samtools variation 990795 990795 . . . alleles " T C"; frequencies " 0.506329113924051 0.493670886075949"; depth 79 ; unknown ; synonymous GL192645.1 samtools variation 996232 996232 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 145 ; known ; synonymous GL192645.1 samtools variation 1001527 1001527 . . . alleles " C T"; frequencies " 0.653333333333333 0.333333333333333"; depth 150 ; known ; synonymous GL192645.1 samtools variation 1002525 1002525 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192645.1 samtools variation 1003010 1003010 . . . alleles " G C"; frequencies " 0.203389830508475 0.796610169491525"; depth 59 ; known ; N/A GL192645.1 samtools variation 1003017 1003017 . . . alleles " T C"; frequencies " 0.262295081967213 0.737704918032787"; depth 61 ; known ; N/A GL192645.1 samtools variation 1004776 1004776 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192645.1 samtools variation 1007425 1007425 . . . alleles " C A"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; N/A GL192645.1 samtools variation 1085601 1085601 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; synonymous GL192645.1 samtools variation 1193250 1193250 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 32 ; known ; N/A GL192647.1 samtools variation 19549 19549 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192647.1 samtools variation 22766 22766 . . . alleles " T C"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; known ; N/A GL192647.1 samtools variation 23000 23000 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL192647.1 samtools variation 24179 24179 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192647.1 samtools variation 24420 24420 . . . alleles " G T"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL192647.1 samtools variation 25864 25864 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 39 ; unknown ; N/A GL192647.1 samtools variation 34752 34752 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192647.1 samtools variation 39650 39650 . . . alleles " T A"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL192647.1 samtools variation 47422 47422 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; known ; N/A GL192647.1 samtools variation 51302 51302 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192647.1 samtools variation 51807 51807 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192647.1 samtools variation 95786 95786 . . . alleles " G A"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; non-synonymous GL192647.1 samtools variation 101365 101365 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; synonymous GL192647.1 samtools variation 102302 102302 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192647.1 samtools variation 163269 163269 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; synonymous GL192647.1 samtools variation 223833 223833 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192647.1 samtools variation 351941 351941 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192647.1 samtools variation 368506 368506 . . . alleles " C T"; frequencies " 0.74 0.26"; depth 50 ; unknown ; N/A GL192647.1 samtools variation 369130 369130 . . . alleles " G A"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL192647.1 samtools variation 370339 370339 . . . alleles " T C"; frequencies " 0.469387755102041 0.530612244897959"; depth 49 ; unknown ; N/A GL192647.1 samtools variation 370467 370467 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192647.1 samtools variation 371087 371087 . . . alleles " A G"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; unknown ; N/A GL192647.1 samtools variation 371352 371352 . . . alleles " C T"; frequencies " 0.459459459459459 0.540540540540541"; depth 37 ; unknown ; N/A GL192647.1 samtools variation 371586 371586 . . . alleles " A T"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL192647.1 samtools variation 372254 372254 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192647.1 samtools variation 373199 373199 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192647.1 samtools variation 393348 393348 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192647.1 samtools variation 413008 413008 . . . alleles " C T"; frequencies " 0.784810126582278 0.215189873417722"; depth 79 ; unknown ; non-synonymous GL192647.1 samtools variation 421096 421096 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192647.1 samtools variation 421720 421720 . . . alleles " C T"; frequencies " 0.795180722891566 0.204819277108434"; depth 166 ; unknown ; non-synonymous GL192647.1 samtools variation 426712 426712 . . . alleles " C A"; frequencies " 0.752631578947368 0.247368421052632"; depth 190 ; unknown ; synonymous GL192647.1 samtools variation 427995 427995 . . . alleles " C A"; frequencies " 0.765486725663717 0.234513274336283"; depth 226 ; unknown ; synonymous GL192647.1 samtools variation 441636 441636 . . . alleles " C A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; non-synonymous GL192647.1 samtools variation 448993 448993 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; synonymous GL192647.1 samtools variation 464151 464151 . . . alleles " G C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192647.1 samtools variation 1045131 1045131 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192647.1 samtools variation 1045304 1045304 . . . alleles " G C"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL192647.1 samtools variation 1045451 1045451 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192647.1 samtools variation 1049617 1049617 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192647.1 samtools variation 1053825 1053825 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192647.1 samtools variation 1053856 1053856 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192647.1 samtools variation 1061073 1061073 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192647.1 samtools variation 1061870 1061870 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 65 ; unknown ; non-synonymous GL192647.1 samtools variation 1061986 1061986 . . . alleles " C T"; frequencies " 0.623188405797101 0.376811594202899"; depth 69 ; unknown ; N/A GL192647.1 samtools variation 1062149 1062149 . . . alleles " A G"; frequencies " 0.582278481012658 0.417721518987342"; depth 79 ; unknown ; N/A GL192647.1 samtools variation 1062295 1062295 . . . alleles " C T"; frequencies " 0.608910891089109 0.391089108910891"; depth 202 ; unknown ; N/A GL192647.1 samtools variation 1062437 1062437 . . . alleles " G A"; frequencies " 0.473469387755102 0.526530612244898"; depth 245 ; unknown ; N/A GL192647.1 samtools variation 1062809 1062809 . . . alleles " C G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192647.1 samtools variation 1066077 1066077 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; unknown ; non-synonymous GL192647.1 samtools variation 1262645 1262645 . . . alleles " C T"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192647.1 samtools variation 1278368 1278368 . . . alleles " G A"; frequencies " 0.477941176470588 0.522058823529412"; depth 136 ; unknown ; N/A GL192647.1 samtools variation 1278744 1278744 . . . alleles " C T"; frequencies " 0.505050505050505 0.494949494949495"; depth 99 ; unknown ; N/A GL192647.1 samtools variation 1279076 1279076 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 42 ; known ; N/A GL192647.1 samtools variation 1279823 1279823 . . . alleles " G C"; frequencies " 0.407407407407407 0.592592592592593"; depth 54 ; known ; N/A GL192647.1 samtools variation 1280536 1280536 . . . alleles " G T"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL192647.1 samtools variation 1501330 1501330 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192647.1 samtools variation 1502798 1502798 . . . alleles " G A"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL192647.1 samtools variation 1503447 1503447 . . . alleles " G T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192647.1 samtools variation 1503774 1503774 . . . alleles " A T"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL192647.1 samtools variation 1503790 1503790 . . . alleles " G T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192647.1 samtools variation 1503926 1503926 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 35 ; unknown ; N/A GL192647.1 samtools variation 1503933 1503933 . . . alleles " C T"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; N/A GL192647.1 samtools variation 1504625 1504625 . . . alleles " T C"; frequencies " 0.395348837209302 0.604651162790698"; depth 43 ; unknown ; N/A GL192647.1 samtools variation 1536802 1536802 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL192647.1 samtools variation 1536804 1536804 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192647.1 samtools variation 1557029 1557029 . . . alleles " G A"; frequencies " 0.744525547445255 0.255474452554745"; depth 137 ; known ; N/A GL192647.1 samtools variation 1557279 1557279 . . . alleles " G A"; frequencies " 0.475352112676056 0.524647887323944"; depth 852 ; unknown ; N/A GL192647.1 samtools variation 1557386 1557386 . . . alleles " T G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192647.1 samtools variation 1558781 1558781 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192647.1 samtools variation 1559261 1559261 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192647.1 samtools variation 1561454 1561454 . . . alleles " G A"; frequencies " 0.28 0.72"; depth 25 ; unknown ; N/A GL192647.1 samtools variation 1563804 1563804 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192647.1 samtools variation 1564669 1564669 . . . alleles " C T"; frequencies " 0.517935258092738 0.482064741907262"; depth 1143 ; unknown ; synonymous GL192647.1 samtools variation 1564738 1564738 . . . alleles " G A"; frequencies " 0.458646616541353 0.541353383458647"; depth 133 ; unknown ; N/A GL192647.1 samtools variation 1565405 1565405 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 108 ; unknown ; N/A GL192647.1 samtools variation 1569067 1569067 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192647.1 samtools variation 1569903 1569903 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192647.1 samtools variation 1573336 1573336 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 40 ; unknown ; N/A GL192647.1 samtools variation 1573766 1573766 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 99 ; unknown ; N/A GL192647.1 samtools variation 1573778 1573778 . . . alleles " A G"; frequencies " 0.709090909090909 0.290909090909091"; depth 110 ; unknown ; N/A GL192647.1 samtools variation 1574038 1574038 . . . alleles " C T"; frequencies " 0.728571428571429 0.271428571428571"; depth 140 ; unknown ; N/A GL192647.1 samtools variation 1576837 1576837 . . . alleles " A G"; frequencies " 0.747126436781609 0.252873563218391"; depth 87 ; unknown ; N/A GL192647.1 samtools variation 1577218 1577218 . . . alleles " C G"; frequencies " 0.775862068965517 0.224137931034483"; depth 58 ; unknown ; N/A GL192647.1 samtools variation 1577573 1577573 . . . alleles " A G"; frequencies " 0.725 0.275"; depth 40 ; unknown ; N/A GL192647.1 samtools variation 1586197 1586197 . . . alleles " T C"; frequencies " 0.216216216216216 0.783783783783784"; depth 37 ; unknown ; N/A GL192647.1 samtools variation 1593564 1593564 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192647.1 samtools variation 1595502 1595502 . . . alleles " G A"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; N/A GL192647.1 samtools variation 1596632 1596632 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192647.1 samtools variation 1596661 1596661 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; known ; N/A GL192647.1 samtools variation 1598012 1598012 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 58 ; known ; N/A GL192647.1 samtools variation 1598241 1598241 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192647.1 samtools variation 1598260 1598260 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192647.1 samtools variation 1599261 1599261 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192647.1 samtools variation 1600463 1600463 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192647.1 samtools variation 1601760 1601760 . . . alleles " A G"; frequencies " 0.373134328358209 0.626865671641791"; depth 201 ; known ; N/A GL192647.1 samtools variation 1602043 1602043 . . . alleles " T C"; frequencies " 0.401515151515151 0.598484848484849"; depth 132 ; known ; N/A GL192647.1 samtools variation 1602120 1602120 . . . alleles " G C"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL192647.1 samtools variation 1602470 1602470 . . . alleles " G C"; frequencies " 0.326732673267327 0.673267326732673"; depth 101 ; unknown ; N/A GL192647.1 samtools variation 1602479 1602479 . . . alleles " G A"; frequencies " 0.390625 0.609375"; depth 128 ; unknown ; N/A GL192647.1 samtools variation 1603008 1603008 . . . alleles " G T"; frequencies " 0.394059405940594 0.605940594059406"; depth 505 ; unknown ; N/A GL192647.1 samtools variation 1625904 1625904 . . . alleles " G A"; frequencies " 0.779069767441861 0.22093023255814"; depth 86 ; unknown ; N/A GL192647.1 samtools variation 1625968 1625968 . . . alleles " T A"; frequencies " 0.743589743589744 0.243589743589744"; depth 78 ; unknown ; N/A GL192647.1 samtools variation 1626517 1626517 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; N/A GL192647.1 samtools variation 1626544 1626544 . . . alleles " G A"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL192647.1 samtools variation 1626677 1626677 . . . alleles " C G"; frequencies " 0.787878787878788 0.212121212121212"; depth 99 ; unknown ; N/A GL192648.1 samtools variation 749546 749546 . . . alleles " A G"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; known ; N/A GL192648.1 samtools variation 749886 749886 . . . alleles " C A"; frequencies " 0.511627906976744 0.488372093023256"; depth 129 ; known ; synonymous GL192648.1 samtools variation 749919 749919 . . . alleles " T A"; frequencies " 0.211864406779661 0.788135593220339"; depth 118 ; known ; synonymous GL192648.1 samtools variation 750367 750367 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL192648.1 samtools variation 750417 750417 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192648.1 samtools variation 753809 753809 . . . alleles " A T"; frequencies " 0.34375 0.65625"; depth 32 ; known ; N/A GL192648.1 samtools variation 754380 754380 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192648.1 samtools variation 756291 756291 . . . alleles " G C"; frequencies " 0.699438202247191 0.300561797752809"; depth 356 ; unknown ; synonymous GL192648.1 samtools variation 760538 760538 . . . alleles " G C"; frequencies " 0.206690561529271 0.789725209080048"; depth 837 ; known ; synonymous GL192648.1 samtools variation 760950 760950 . . . alleles " C T"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL192648.1 samtools variation 762436 762436 . . . alleles " G A"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL192648.1 samtools variation 763564 763564 . . . alleles " G A"; frequencies " 0.207792207792208 0.792207792207792"; depth 77 ; known ; N/A GL192648.1 samtools variation 769677 769677 . . . alleles " C T"; frequencies " 0.759345794392523 0.240654205607477"; depth 1284 ; unknown ; non-synonymous GL192648.1 samtools variation 773179 773179 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192648.1 samtools variation 969254 969254 . . . alleles " G A"; frequencies " 0.325396825396825 0.674603174603175"; depth 126 ; known ; N/A GL192648.1 samtools variation 972064 972064 . . . alleles " C A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; synonymous GL192648.1 samtools variation 972756 972756 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192648.1 samtools variation 981296 981296 . . . alleles " G A"; frequencies " 0.592233009708738 0.407766990291262"; depth 103 ; unknown ; non-synonymous GL192648.1 samtools variation 1156839 1156839 . . . alleles " T C"; frequencies " 0.728813559322034 0.271186440677966"; depth 59 ; unknown ; N/A GL192648.1 samtools variation 1273722 1273722 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192648.1 samtools variation 1435589 1435589 . . . alleles " A G"; frequencies " 0.708333333333333 0.291666666666667"; depth 96 ; unknown ; synonymous GL192648.1 samtools variation 1600884 1600884 . . . alleles " A G"; frequencies " 0.735849056603774 0.264150943396226"; depth 53 ; unknown ; N/A GL192648.1 samtools variation 1601364 1601364 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 66 ; known ; N/A GL192648.1 samtools variation 1601611 1601611 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 30 ; known ; N/A GL192648.1 samtools variation 1603193 1603193 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192648.1 samtools variation 1603312 1603312 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; known ; N/A GL192648.1 samtools variation 1717480 1717480 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192648.1 samtools variation 1723276 1723276 . . . alleles " A G"; frequencies " 0.304878048780488 0.695121951219512"; depth 82 ; unknown ; N/A GL192648.1 samtools variation 1723280 1723280 . . . alleles " T C"; frequencies " 0.359375 0.640625"; depth 64 ; unknown ; N/A GL192648.1 samtools variation 1723553 1723553 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192648.1 samtools variation 1724733 1724733 . . . alleles " G T"; frequencies " 0.287735849056604 0.712264150943396"; depth 212 ; known ; N/A GL192648.1 samtools variation 1726115 1726115 . . . alleles " C T"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL192649.1 samtools variation 80151 80151 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; synonymous GL192649.1 samtools variation 125299 125299 . . . alleles " T C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192649.1 samtools variation 607143 607143 . . . alleles " A G"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; synonymous GL192649.1 samtools variation 628297 628297 . . . alleles " G T"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; unknown ; N/A GL192649.1 samtools variation 631701 631701 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192649.1 samtools variation 631863 631863 . . . alleles " G C"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192649.1 samtools variation 970404 970404 . . . alleles " G C"; frequencies " 0.797101449275362 0.202898550724638"; depth 69 ; unknown ; synonymous GL192649.1 samtools variation 975065 975065 . . . alleles " T C"; frequencies " 0.566666666666667 0.433333333333333"; depth 60 ; unknown ; synonymous GL192649.1 samtools variation 1002316 1002316 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192649.1 samtools variation 1003073 1003073 . . . alleles " G A"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL192649.1 samtools variation 1003377 1003377 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 32 ; unknown ; N/A GL192649.1 samtools variation 1003580 1003580 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192649.1 samtools variation 1003784 1003784 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 100 ; unknown ; non-synonymous GL192649.1 samtools variation 1277452 1277452 . . . alleles " T G"; frequencies " 0.205882352941176 0.794117647058823"; depth 34 ; unknown ; N/A GL192649.1 samtools variation 1277588 1277588 . . . alleles " G T"; frequencies " 0.222222222222222 0.777777777777778"; depth 54 ; unknown ; N/A GL192649.1 samtools variation 1496136 1496136 . . . alleles " C A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192649.1 samtools variation 1514577 1514577 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192649.1 samtools variation 1515169 1515169 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192649.1 samtools variation 1517543 1517543 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192649.1 samtools variation 1518578 1518578 . . . alleles " T G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192649.1 samtools variation 1518867 1518867 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 51 ; unknown ; N/A GL192649.1 samtools variation 1520300 1520300 . . . alleles " A T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192649.1 samtools variation 1521849 1521849 . . . alleles " A G"; frequencies " 0.223214285714286 0.776785714285714"; depth 112 ; known ; N/A GL192649.1 samtools variation 1636025 1636025 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192649.1 samtools variation 1637613 1637613 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192649.1 samtools variation 1637621 1637621 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192649.1 samtools variation 1638550 1638550 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192649.1 samtools variation 1638875 1638875 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192649.1 samtools variation 1721334 1721334 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192650.1 samtools variation 659196 659196 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192650.1 samtools variation 659316 659316 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192650.1 samtools variation 659322 659322 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192650.1 samtools variation 662432 662432 . . . alleles " G T"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL192650.1 samtools variation 663319 663319 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192650.1 samtools variation 663721 663721 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192650.1 samtools variation 663725 663725 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; N/A GL192650.1 samtools variation 664299 664299 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192650.1 samtools variation 665679 665679 . . . alleles " T C"; frequencies " 0.67741935483871 0.32258064516129"; depth 62 ; unknown ; synonymous GL192650.1 samtools variation 665737 665737 . . . alleles " C A"; frequencies " 0.625 0.375"; depth 136 ; unknown ; non-synonymous GL192650.1 samtools variation 670415 670415 . . . alleles " A G"; frequencies " 0.23 0.77"; depth 100 ; unknown ; non-synonymous GL192650.1 samtools variation 670864 670864 . . . alleles " A G"; frequencies " 0.283783783783784 0.716216216216216"; depth 74 ; unknown ; N/A GL192650.1 samtools variation 1121391 1121391 . . . alleles " C A"; frequencies " 0.6125 0.3875"; depth 160 ; unknown ; N/A GL192650.1 samtools variation 1122114 1122114 . . . alleles " A G"; frequencies " 0.669449081803005 0.330550918196995"; depth 599 ; unknown ; synonymous GL192650.1 samtools variation 1122540 1122540 . . . alleles " C T"; frequencies " 0.662613981762918 0.337386018237082"; depth 658 ; known ; synonymous GL192650.1 samtools variation 1122837 1122837 . . . alleles " T C"; frequencies " 0.727158948685857 0.272841051314143"; depth 799 ; unknown ; synonymous GL192650.1 samtools variation 1177436 1177436 . . . alleles " G T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192650.1 samtools variation 1255196 1255196 . . . alleles " C T"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192650.1 samtools variation 1255409 1255409 . . . alleles " T C"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; unknown ; N/A GL192650.1 samtools variation 1260792 1260792 . . . alleles " A G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192650.1 samtools variation 1297751 1297751 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192650.1 samtools variation 1301459 1301459 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192650.1 samtools variation 1308777 1308777 . . . alleles " C T"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192650.1 samtools variation 1316061 1316061 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192650.1 samtools variation 1319866 1319866 . . . alleles " A C"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192650.1 samtools variation 1319977 1319977 . . . alleles " G C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192650.1 samtools variation 1331297 1331297 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192650.1 samtools variation 1339400 1339400 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192650.1 samtools variation 1339405 1339405 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192650.1 samtools variation 1340391 1340391 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192650.1 samtools variation 1342984 1342984 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192650.1 samtools variation 1343037 1343037 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192650.1 samtools variation 1343298 1343298 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192650.1 samtools variation 1343344 1343344 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192650.1 samtools variation 1347311 1347311 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192650.1 samtools variation 1348860 1348860 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192650.1 samtools variation 1349562 1349562 . . . alleles " G A"; frequencies " 0.666666666666667 0.277777777777778"; depth 18 ; unknown ; N/A GL192650.1 samtools variation 1390286 1390286 . . . alleles " C A"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192650.1 samtools variation 1395984 1395984 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192650.1 samtools variation 1396042 1396042 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192650.1 samtools variation 1396056 1396056 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192650.1 samtools variation 1536784 1536784 . . . alleles " T G"; frequencies " 0.779151943462898 0.220848056537102"; depth 566 ; unknown ; N/A GL192650.1 samtools variation 1536846 1536846 . . . alleles " C T"; frequencies " 0.472049689440994 0.527950310559006"; depth 1127 ; unknown ; N/A GL192650.1 samtools variation 1537500 1537500 . . . alleles " A G"; frequencies " 0.576335877862595 0.423664122137405"; depth 262 ; unknown ; N/A GL192650.1 samtools variation 1537524 1537524 . . . alleles " A G"; frequencies " 0.330612244897959 0.669387755102041"; depth 245 ; unknown ; N/A GL192650.1 samtools variation 1537626 1537626 . . . alleles " T C"; frequencies " 0.324324324324324 0.675675675675676"; depth 74 ; unknown ; N/A GL192650.1 samtools variation 1537685 1537685 . . . alleles " T C"; frequencies " 0.426751592356688 0.573248407643312"; depth 314 ; unknown ; N/A GL192650.1 samtools variation 1537687 1537687 . . . alleles " G A"; frequencies " 0.429936305732484 0.570063694267516"; depth 314 ; unknown ; N/A GL192650.1 samtools variation 1537833 1537833 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 310 ; unknown ; N/A GL192650.1 samtools variation 1537870 1537870 . . . alleles " A G"; frequencies " 0.321637426900585 0.678362573099415"; depth 342 ; unknown ; N/A GL192650.1 samtools variation 1538415 1538415 . . . alleles " A G"; frequencies " 0.598019801980198 0.401980198019802"; depth 505 ; unknown ; N/A GL192650.1 samtools variation 1538551 1538551 . . . alleles " A C"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL192650.1 samtools variation 1538552 1538552 . . . alleles " G A"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL192650.1 samtools variation 1540703 1540703 . . . alleles " A G"; frequencies " 0.59375 0.40625"; depth 256 ; unknown ; N/A GL192650.1 samtools variation 1540705 1540705 . . . alleles " C T"; frequencies " 0.775590551181102 0.224409448818898"; depth 254 ; unknown ; N/A GL192650.1 samtools variation 1540727 1540727 . . . alleles " A G"; frequencies " 0.357758620689655 0.642241379310345"; depth 232 ; unknown ; N/A GL192650.1 samtools variation 1540829 1540829 . . . alleles " T C"; frequencies " 0.447058823529412 0.552941176470588"; depth 85 ; unknown ; N/A GL192650.1 samtools variation 1540888 1540888 . . . alleles " T C"; frequencies " 0.392982456140351 0.607017543859649"; depth 285 ; unknown ; N/A GL192650.1 samtools variation 1540890 1540890 . . . alleles " G A"; frequencies " 0.384341637010676 0.615658362989324"; depth 281 ; unknown ; N/A GL192650.1 samtools variation 1541073 1541073 . . . alleles " A G"; frequencies " 0.282467532467532 0.717532467532468"; depth 308 ; unknown ; N/A GL192650.1 samtools variation 1541619 1541619 . . . alleles " A G"; frequencies " 0.659693165969317 0.340306834030683"; depth 717 ; unknown ; N/A GL192650.1 samtools variation 1541755 1541755 . . . alleles " A C"; frequencies " 0.291666666666667 0.666666666666667"; depth 24 ; unknown ; N/A GL192650.1 samtools variation 1541756 1541756 . . . alleles " G A"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; N/A GL192650.1 samtools variation 1541805 1541805 . . . alleles " T G"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; unknown ; N/A GL192650.1 samtools variation 1545463 1545463 . . . alleles " C T"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL192650.1 samtools variation 1548128 1548128 . . . alleles " T A"; frequencies " 0.634920634920635 0.365079365079365"; depth 63 ; unknown ; N/A GL192650.1 samtools variation 1548188 1548188 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL192650.1 samtools variation 1548865 1548865 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192650.1 samtools variation 1558513 1558513 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192650.1 samtools variation 1559641 1559641 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192650.1 samtools variation 1560841 1560841 . . . alleles " T C"; frequencies " 0.433962264150943 0.566037735849057"; depth 53 ; unknown ; N/A GL192650.1 samtools variation 1560861 1560861 . . . alleles " C T"; frequencies " 0.403846153846154 0.596153846153846"; depth 52 ; unknown ; N/A GL192650.1 samtools variation 1561098 1561098 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192650.1 samtools variation 1561832 1561832 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192650.1 samtools variation 1563239 1563239 . . . alleles " T A"; frequencies " 0.481012658227848 0.518987341772152"; depth 79 ; unknown ; N/A GL192650.1 samtools variation 1563257 1563257 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 64 ; unknown ; N/A GL192650.1 samtools variation 1563864 1563864 . . . alleles " C T"; frequencies " 0.544117647058823 0.455882352941176"; depth 68 ; unknown ; N/A GL192650.1 samtools variation 1564038 1564038 . . . alleles " T C"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; unknown ; N/A GL192650.1 samtools variation 1564684 1564684 . . . alleles " A G"; frequencies " 0.679245283018868 0.320754716981132"; depth 53 ; unknown ; N/A GL192650.1 samtools variation 1566156 1566156 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192650.1 samtools variation 1566189 1566189 . . . alleles " G A"; frequencies " 0.305555555555556 0.694444444444444"; depth 36 ; unknown ; N/A GL192650.1 samtools variation 1566799 1566799 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192650.1 samtools variation 1568368 1568368 . . . alleles " G A"; frequencies " 0.21875 0.78125"; depth 32 ; unknown ; N/A GL192650.1 samtools variation 1568645 1568645 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 65 ; unknown ; N/A GL192650.1 samtools variation 1569617 1569617 . . . alleles " G A"; frequencies " 0.216216216216216 0.783783783783784"; depth 37 ; unknown ; N/A GL192650.1 samtools variation 1570259 1570259 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192650.1 samtools variation 1570950 1570950 . . . alleles " C G"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; unknown ; N/A GL192650.1 samtools variation 1571054 1571054 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL192650.1 samtools variation 1574810 1574810 . . . alleles " C A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192650.1 samtools variation 1576895 1576895 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192650.1 samtools variation 1577014 1577014 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192650.1 samtools variation 1578071 1578071 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192650.1 samtools variation 1578161 1578161 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192650.1 samtools variation 1578976 1578976 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192650.1 samtools variation 1579031 1579031 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192650.1 samtools variation 1584035 1584035 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192650.1 samtools variation 1584358 1584358 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL192650.1 samtools variation 1589784 1589784 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192650.1 samtools variation 1589799 1589799 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192650.1 samtools variation 1591590 1591590 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192650.1 samtools variation 1595249 1595249 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 75 ; known ; N/A GL192650.1 samtools variation 1595852 1595852 . . . alleles " T G"; frequencies " 0.241379310344828 0.758620689655172"; depth 29 ; known ; N/A GL192650.1 samtools variation 1598879 1598879 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192650.1 samtools variation 1598925 1598925 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL192650.1 samtools variation 1599680 1599680 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; known ; N/A GL192650.1 samtools variation 1599699 1599699 . . . alleles " C G"; frequencies " 0.46875 0.53125"; depth 32 ; known ; N/A GL192650.1 samtools variation 1600294 1600294 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192650.1 samtools variation 1600604 1600604 . . . alleles " A T"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; known ; N/A GL192650.1 samtools variation 1600628 1600628 . . . alleles " C A"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; known ; N/A GL192650.1 samtools variation 1600740 1600740 . . . alleles " T A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192650.1 samtools variation 1600927 1600927 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192650.1 samtools variation 1601167 1601167 . . . alleles " C T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; known ; N/A GL192650.1 samtools variation 1601189 1601189 . . . alleles " G C"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; known ; N/A GL192650.1 samtools variation 1601440 1601440 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192650.1 samtools variation 1601550 1601550 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 81 ; known ; N/A GL192650.1 samtools variation 1601912 1601912 . . . alleles " T C"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; known ; N/A GL192650.1 samtools variation 1601962 1601962 . . . alleles " A G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL192650.1 samtools variation 1602149 1602149 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; N/A GL192650.1 samtools variation 1602231 1602231 . . . alleles " T C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; known ; N/A GL192650.1 samtools variation 1602331 1602331 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192650.1 samtools variation 1602356 1602356 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL192650.1 samtools variation 1602605 1602605 . . . alleles " A T"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; known ; N/A GL192650.1 samtools variation 1602917 1602917 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 28 ; known ; N/A GL192650.1 samtools variation 1603023 1603023 . . . alleles " T G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL192650.1 samtools variation 1603171 1603171 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 65 ; unknown ; N/A GL192650.1 samtools variation 1603196 1603196 . . . alleles " G A"; frequencies " 0.671428571428571 0.328571428571429"; depth 70 ; known ; N/A GL192650.1 samtools variation 1603262 1603262 . . . alleles " A G"; frequencies " 0.354166666666667 0.645833333333333"; depth 48 ; known ; N/A GL192650.1 samtools variation 1603317 1603317 . . . alleles " T C"; frequencies " 0.651162790697674 0.348837209302326"; depth 43 ; known ; N/A GL192650.1 samtools variation 1603546 1603546 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192650.1 samtools variation 1603988 1603988 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 60 ; known ; N/A GL192650.1 samtools variation 1604013 1604013 . . . alleles " C T"; frequencies " 0.716666666666667 0.283333333333333"; depth 60 ; known ; N/A GL192650.1 samtools variation 1604176 1604176 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 72 ; known ; N/A GL192650.1 samtools variation 1604263 1604263 . . . alleles " C T"; frequencies " 0.682352941176471 0.317647058823529"; depth 85 ; known ; N/A GL192650.1 samtools variation 1604771 1604771 . . . alleles " A G"; frequencies " 0.633802816901408 0.366197183098592"; depth 71 ; known ; N/A GL192650.1 samtools variation 1604801 1604801 . . . alleles " A G"; frequencies " 0.32258064516129 0.67741935483871"; depth 62 ; known ; N/A GL192650.1 samtools variation 1605315 1605315 . . . alleles " T C"; frequencies " 0.347826086956522 0.652173913043478"; depth 207 ; known ; N/A GL192650.1 samtools variation 1606097 1606097 . . . alleles " C G"; frequencies " 0.48780487804878 0.51219512195122"; depth 41 ; known ; N/A GL192650.1 samtools variation 1606126 1606126 . . . alleles " A C"; frequencies " 0.564102564102564 0.435897435897436"; depth 39 ; unknown ; N/A GL192650.1 samtools variation 1606128 1606128 . . . alleles " C T"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; unknown ; N/A GL192650.1 samtools variation 1606861 1606861 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192651.1 samtools variation 11581 11581 . . . alleles " A G"; frequencies " 0.479166666666667 0.520833333333333"; depth 48 ; known ; N/A GL192651.1 samtools variation 11780 11780 . . . alleles " C T"; frequencies " 0.743589743589744 0.256410256410256"; depth 117 ; known ; N/A GL192651.1 samtools variation 11799 11799 . . . alleles " G A"; frequencies " 0.70253164556962 0.29746835443038"; depth 158 ; known ; N/A GL192651.1 samtools variation 11834 11834 . . . alleles " C T"; frequencies " 0.683823529411765 0.316176470588235"; depth 136 ; unknown ; N/A GL192651.1 samtools variation 26468 26468 . . . alleles " G A"; frequencies " 0.571725571725572 0.428274428274428"; depth 481 ; known ; N/A GL192651.1 samtools variation 30304 30304 . . . alleles " C T"; frequencies " 0.711864406779661 0.288135593220339"; depth 59 ; known ; N/A GL192651.1 samtools variation 31172 31172 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; known ; N/A GL192651.1 samtools variation 38377 38377 . . . alleles " T A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192651.1 samtools variation 52779 52779 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192651.1 samtools variation 55955 55955 . . . alleles " C T"; frequencies " 0.620689655172414 0.379310344827586"; depth 58 ; unknown ; N/A GL192651.1 samtools variation 55996 55996 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; known ; N/A GL192651.1 samtools variation 57295 57295 . . . alleles " C T"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; N/A GL192651.1 samtools variation 58497 58497 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL192651.1 samtools variation 229438 229438 . . . alleles " C T"; frequencies " 0.56 0.44"; depth 25 ; known ; N/A GL192651.1 samtools variation 229508 229508 . . . alleles " G C"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL192651.1 samtools variation 249600 249600 . . . alleles " T A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192651.1 samtools variation 249741 249741 . . . alleles " T C"; frequencies " 0.748663101604278 0.251336898395722"; depth 187 ; unknown ; N/A GL192651.1 samtools variation 249875 249875 . . . alleles " A C"; frequencies " 0.331550802139037 0.668449197860963"; depth 187 ; known ; N/A GL192651.1 samtools variation 251170 251170 . . . alleles " T C"; frequencies " 0.256410256410256 0.743589743589744"; depth 78 ; known ; N/A GL192651.1 samtools variation 273064 273064 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192651.1 samtools variation 273180 273180 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192651.1 samtools variation 280297 280297 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192651.1 samtools variation 359584 359584 . . . alleles " A G"; frequencies " 0.342105263157895 0.657894736842105"; depth 38 ; known ; N/A GL192651.1 samtools variation 461032 461032 . . . alleles " C A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192651.1 samtools variation 719692 719692 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192651.1 samtools variation 719703 719703 . . . alleles " A C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192651.1 samtools variation 720176 720176 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192651.1 samtools variation 720177 720177 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192651.1 samtools variation 720390 720390 . . . alleles " T C"; frequencies " 0.306930693069307 0.693069306930693"; depth 101 ; unknown ; N/A GL192651.1 samtools variation 720492 720492 . . . alleles " C G"; frequencies " 0.316455696202532 0.670886075949367"; depth 79 ; unknown ; N/A GL192651.1 samtools variation 720594 720594 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL192651.1 samtools variation 720906 720906 . . . alleles " A G"; frequencies " 0.382352941176471 0.617647058823529"; depth 68 ; unknown ; N/A GL192651.1 samtools variation 721393 721393 . . . alleles " G T"; frequencies " 0.568181818181818 0.431818181818182"; depth 44 ; unknown ; N/A GL192651.1 samtools variation 730899 730899 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192651.1 samtools variation 893051 893051 . . . alleles " G C"; frequencies " 0.742857142857143 0.257142857142857"; depth 70 ; unknown ; synonymous GL192651.1 samtools variation 914008 914008 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192651.1 samtools variation 1072638 1072638 . . . alleles " A G"; frequencies " 0.676767676767677 0.323232323232323"; depth 99 ; unknown ; N/A GL192651.1 samtools variation 1072966 1072966 . . . alleles " G T"; frequencies " 0.770491803278688 0.229508196721311"; depth 61 ; unknown ; N/A GL192651.1 samtools variation 1076187 1076187 . . . alleles " A G"; frequencies " 0.774566473988439 0.225433526011561"; depth 173 ; unknown ; N/A GL192651.1 samtools variation 1127775 1127775 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL192651.1 samtools variation 1255035 1255035 . . . alleles " G A"; frequencies " 0.283333333333333 0.716666666666667"; depth 60 ; known ; N/A GL192651.1 samtools variation 1260512 1260512 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192651.1 samtools variation 1312185 1312185 . . . alleles " G A"; frequencies " 0.732142857142857 0.267857142857143"; depth 56 ; unknown ; synonymous GL192652.1 samtools variation 8985 8985 . . . alleles " A T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192652.1 samtools variation 142895 142895 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192652.1 samtools variation 241094 241094 . . . alleles " G A"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; non-synonymous GL192652.1 samtools variation 476869 476869 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192652.1 samtools variation 494310 494310 . . . alleles " G C"; frequencies " 0.274193548387097 0.725806451612903"; depth 62 ; unknown ; non-synonymous GL192652.1 samtools variation 506985 506985 . . . alleles " A C"; frequencies " 0.352941176470588 0.647058823529412"; depth 34 ; unknown ; N/A GL192652.1 samtools variation 506987 506987 . . . alleles " G T"; frequencies " 0.3 0.7"; depth 40 ; unknown ; N/A GL192652.1 samtools variation 663196 663196 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192652.1 samtools variation 686280 686280 . . . alleles " C T"; frequencies " 0.274193548387097 0.725806451612903"; depth 62 ; unknown ; synonymous GL192652.1 samtools variation 766185 766185 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192652.1 samtools variation 783192 783192 . . . alleles " A G"; frequencies " 0.796296296296296 0.203703703703704"; depth 54 ; unknown ; N/A GL192652.1 samtools variation 791984 791984 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192652.1 samtools variation 1591373 1591373 . . . alleles " G T"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192654.1 samtools variation 52961 52961 . . . alleles " A C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192654.1 samtools variation 53052 53052 . . . alleles " C T"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192654.1 samtools variation 53070 53070 . . . alleles " A T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192654.1 samtools variation 53098 53098 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; unknown ; N/A GL192654.1 samtools variation 53260 53260 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192654.1 samtools variation 53561 53561 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192654.1 samtools variation 53927 53927 . . . alleles " C G"; frequencies " 0.780821917808219 0.219178082191781"; depth 73 ; unknown ; N/A GL192654.1 samtools variation 86424 86424 . . . alleles " G A"; frequencies " 0.544871794871795 0.455128205128205"; depth 156 ; unknown ; N/A GL192654.1 samtools variation 175584 175584 . . . alleles " A G"; frequencies " 0.264367816091954 0.735632183908046"; depth 87 ; unknown ; non-synonymous GL192654.1 samtools variation 945536 945536 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192654.1 samtools variation 949222 949222 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 40 ; unknown ; N/A GL192654.1 samtools variation 1271262 1271262 . . . alleles " T A"; frequencies " 0.296296296296296 0.703703703703704"; depth 81 ; unknown ; N/A GL192654.1 samtools variation 1546975 1546975 . . . alleles " C T"; frequencies " 0.352348993288591 0.647651006711409"; depth 298 ; unknown ; synonymous GL192654.1 samtools variation 1564770 1564770 . . . alleles " C T"; frequencies " 0.707547169811321 0.292452830188679"; depth 212 ; unknown ; synonymous GL192654.1 samtools variation 1568189 1568189 . . . alleles " A G"; frequencies " 0.377049180327869 0.622950819672131"; depth 61 ; unknown ; synonymous GL192654.1 samtools variation 1644694 1644694 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; synonymous GL192654.1 samtools variation 1653278 1653278 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; synonymous GL192654.1 samtools variation 1665592 1665592 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192654.1 samtools variation 1677342 1677342 . . . alleles " G A"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL192654.1 samtools variation 1680734 1680734 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192655.1 samtools variation 73814 73814 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL192655.1 samtools variation 89427 89427 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192655.1 samtools variation 91348 91348 . . . alleles " G A"; frequencies " 0.62589928057554 0.37410071942446"; depth 139 ; unknown ; synonymous GL192655.1 samtools variation 100326 100326 . . . alleles " C A"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; N/A GL192655.1 samtools variation 102621 102621 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 45 ; known ; N/A GL192656.1 samtools variation 68339 68339 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; synonymous GL192656.1 samtools variation 97523 97523 . . . alleles " G C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; synonymous GL192656.1 samtools variation 107581 107581 . . . alleles " T C"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; unknown ; N/A GL192656.1 samtools variation 107942 107942 . . . alleles " G T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192656.1 samtools variation 108142 108142 . . . alleles " A C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192656.1 samtools variation 108208 108208 . . . alleles " A G"; frequencies " 0.690909090909091 0.309090909090909"; depth 55 ; known ; N/A GL192656.1 samtools variation 108223 108223 . . . alleles " A G"; frequencies " 0.313725490196078 0.686274509803922"; depth 51 ; known ; N/A GL192656.1 samtools variation 108293 108293 . . . alleles " A C"; frequencies " 0.528301886792453 0.471698113207547"; depth 53 ; unknown ; N/A GL192656.1 samtools variation 109168 109168 . . . alleles " G A"; frequencies " 0.768115942028985 0.231884057971014"; depth 69 ; unknown ; N/A GL192656.1 samtools variation 109227 109227 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192656.1 samtools variation 109598 109598 . . . alleles " G A"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; unknown ; N/A GL192656.1 samtools variation 110023 110023 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192656.1 samtools variation 110398 110398 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192656.1 samtools variation 113145 113145 . . . alleles " G A"; frequencies " 0.489711934156379 0.510288065843621"; depth 243 ; known ; N/A GL192656.1 samtools variation 113974 113974 . . . alleles " T C"; frequencies " 0.652892561983471 0.347107438016529"; depth 121 ; known ; N/A GL192656.1 samtools variation 114214 114214 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; known ; N/A GL192656.1 samtools variation 114410 114410 . . . alleles " T G"; frequencies " 0.204545454545455 0.795454545454545"; depth 88 ; known ; N/A GL192656.1 samtools variation 114639 114639 . . . alleles " G A"; frequencies " 0.704347826086957 0.295652173913043"; depth 115 ; unknown ; N/A GL192656.1 samtools variation 114894 114894 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 90 ; known ; N/A GL192656.1 samtools variation 115122 115122 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192656.1 samtools variation 115684 115684 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 108 ; known ; N/A GL192656.1 samtools variation 115932 115932 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 170 ; known ; N/A GL192656.1 samtools variation 115985 115985 . . . alleles " A G"; frequencies " 0.219626168224299 0.780373831775701"; depth 214 ; known ; N/A GL192656.1 samtools variation 116179 116179 . . . alleles " T A"; frequencies " 0.704081632653061 0.295918367346939"; depth 98 ; known ; N/A GL192656.1 samtools variation 116556 116556 . . . alleles " A G"; frequencies " 0.274725274725275 0.725274725274725"; depth 91 ; known ; N/A GL192656.1 samtools variation 116606 116606 . . . alleles " C T"; frequencies " 0.201550387596899 0.798449612403101"; depth 129 ; known ; N/A GL192656.1 samtools variation 118247 118247 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; known ; N/A GL192656.1 samtools variation 119425 119425 . . . alleles " T C"; frequencies " 0.688524590163934 0.311475409836066"; depth 61 ; unknown ; N/A GL192656.1 samtools variation 120414 120414 . . . alleles " G A"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; known ; N/A GL192656.1 samtools variation 120644 120644 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 76 ; known ; N/A GL192656.1 samtools variation 121851 121851 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 63 ; known ; N/A GL192656.1 samtools variation 124040 124040 . . . alleles " C A"; frequencies " 0.247863247863248 0.752136752136752"; depth 117 ; known ; N/A GL192656.1 samtools variation 124599 124599 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 81 ; unknown ; N/A GL192656.1 samtools variation 125255 125255 . . . alleles " C T"; frequencies " 0.699029126213592 0.300970873786408"; depth 103 ; unknown ; N/A GL192656.1 samtools variation 130015 130015 . . . alleles " A G"; frequencies " 0.6751269035533 0.3248730964467"; depth 197 ; known ; synonymous GL192656.1 samtools variation 137567 137567 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192656.1 samtools variation 206163 206163 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL192656.1 samtools variation 228179 228179 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; N/A GL192656.1 samtools variation 231503 231503 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192656.1 samtools variation 232286 232286 . . . alleles " G C"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; known ; N/A GL192656.1 samtools variation 246270 246270 . . . alleles " C G"; frequencies " 0.232044198895028 0.767955801104972"; depth 181 ; known ; N/A GL192656.1 samtools variation 250225 250225 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192656.1 samtools variation 265915 265915 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; synonymous GL192656.1 samtools variation 269700 269700 . . . alleles " C A"; frequencies " 0.76 0.24"; depth 25 ; unknown ; non-synonymous GL192656.1 samtools variation 269720 269720 . . . alleles " C G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; non-synonymous GL192656.1 samtools variation 269751 269751 . . . alleles " T G"; frequencies " 0.716666666666667 0.283333333333333"; depth 60 ; known ; synonymous GL192656.1 samtools variation 362790 362790 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192656.1 samtools variation 392957 392957 . . . alleles " T G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192656.1 samtools variation 807250 807250 . . . alleles " T C"; frequencies " 0.316455696202532 0.683544303797468"; depth 79 ; known ; N/A GL192656.1 samtools variation 807300 807300 . . . alleles " A C"; frequencies " 0.343283582089552 0.656716417910448"; depth 67 ; known ; N/A GL192656.1 samtools variation 807694 807694 . . . alleles " G A"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; known ; N/A GL192656.1 samtools variation 809133 809133 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192656.1 samtools variation 809341 809341 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 414 ; unknown ; N/A GL192656.1 samtools variation 809364 809364 . . . alleles " A G"; frequencies " 0.761467889908257 0.238532110091743"; depth 218 ; known ; N/A GL192656.1 samtools variation 809375 809375 . . . alleles " G A"; frequencies " 0.753694581280788 0.246305418719212"; depth 203 ; known ; N/A GL192656.1 samtools variation 809448 809448 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 310 ; known ; N/A GL192656.1 samtools variation 809635 809635 . . . alleles " A C"; frequencies " 0.662650602409639 0.337349397590361"; depth 166 ; known ; N/A GL192656.1 samtools variation 811667 811667 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192656.1 samtools variation 867875 867875 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192656.1 samtools variation 1326825 1326825 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192656.1 samtools variation 1334168 1334168 . . . alleles " C T"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; known ; N/A GL192656.1 samtools variation 1334181 1334181 . . . alleles " C G"; frequencies " 0.48 0.52"; depth 25 ; known ; N/A GL192656.1 samtools variation 1334609 1334609 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192656.1 samtools variation 1334718 1334718 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192656.1 samtools variation 1335548 1335548 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 30 ; known ; N/A GL192656.1 samtools variation 1335598 1335598 . . . alleles " C A"; frequencies " 0.315789473684211 0.684210526315789"; depth 38 ; known ; N/A GL192656.1 samtools variation 1335766 1335766 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL192656.1 samtools variation 1336160 1336160 . . . alleles " A G"; frequencies " 0.701492537313433 0.298507462686567"; depth 134 ; known ; N/A GL192656.1 samtools variation 1337464 1337464 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 42 ; known ; N/A GL192656.1 samtools variation 1338489 1338489 . . . alleles " A T"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; known ; N/A GL192656.1 samtools variation 1339297 1339297 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 57 ; known ; N/A GL192656.1 samtools variation 1341824 1341824 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL192656.1 samtools variation 1342334 1342334 . . . alleles " G A"; frequencies " 0.367088607594937 0.632911392405063"; depth 79 ; known ; N/A GL192656.1 samtools variation 1343321 1343321 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; known ; N/A GL192656.1 samtools variation 1344220 1344220 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 45 ; known ; N/A GL192656.1 samtools variation 1345427 1345427 . . . alleles " A G"; frequencies " 0.592233009708738 0.407766990291262"; depth 103 ; known ; synonymous GL192656.1 samtools variation 1364450 1364450 . . . alleles " C A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192656.1 samtools variation 1365965 1365965 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192656.1 samtools variation 1366076 1366076 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192656.1 samtools variation 1409142 1409142 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192656.1 samtools variation 1411900 1411900 . . . alleles " A G"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; N/A GL192656.1 samtools variation 1419386 1419386 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192656.1 samtools variation 1458632 1458632 . . . alleles " A T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192656.1 samtools variation 1531389 1531389 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192656.1 samtools variation 1626239 1626239 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192657.1 samtools variation 488308 488308 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192657.1 samtools variation 490271 490271 . . . alleles " A T"; frequencies " 0.405405405405405 0.594594594594595"; depth 37 ; unknown ; N/A GL192657.1 samtools variation 496599 496599 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192657.1 samtools variation 513083 513083 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; unknown ; N/A GL192657.1 samtools variation 517384 517384 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; unknown ; N/A GL192657.1 samtools variation 690142 690142 . . . alleles " A G"; frequencies " 0.527777777777778 0.472222222222222"; depth 72 ; known ; N/A GL192657.1 samtools variation 690205 690205 . . . alleles " C T"; frequencies " 0.612612612612613 0.387387387387387"; depth 111 ; known ; N/A GL192657.1 samtools variation 690212 690212 . . . alleles " G A"; frequencies " 0.575 0.425"; depth 120 ; known ; N/A GL192657.1 samtools variation 1081122 1081122 . . . alleles " G A"; frequencies " 0.794117647058823 0.205882352941176"; depth 102 ; unknown ; synonymous GL192657.1 samtools variation 1184759 1184759 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192657.1 samtools variation 1197448 1197448 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 30 ; known ; synonymous GL192657.1 samtools variation 1203223 1203223 . . . alleles " G T"; frequencies " 0.753846153846154 0.246153846153846"; depth 65 ; known ; N/A GL192657.1 samtools variation 1553999 1553999 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; non-synonymous GL192658.1 samtools variation 1125817 1125817 . . . alleles " C A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192658.1 samtools variation 1131870 1131870 . . . alleles " G A"; frequencies " 0.232558139534884 0.767441860465116"; depth 86 ; known ; N/A GL192658.1 samtools variation 1161139 1161139 . . . alleles " C T"; frequencies " 0.211267605633803 0.788732394366197"; depth 71 ; known ; N/A GL192658.1 samtools variation 1168290 1168290 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL192658.1 samtools variation 1172286 1172286 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192658.1 samtools variation 1207848 1207848 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192658.1 samtools variation 1221422 1221422 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192658.1 samtools variation 1276899 1276899 . . . alleles " C T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192658.1 samtools variation 1281084 1281084 . . . alleles " T A"; frequencies " 0.603174603174603 0.396825396825397"; depth 63 ; known ; N/A GL192658.1 samtools variation 1300727 1300727 . . . alleles " G A"; frequencies " 0.593220338983051 0.406779661016949"; depth 59 ; unknown ; synonymous GL192658.1 samtools variation 1312641 1312641 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192658.1 samtools variation 1316958 1316958 . . . alleles " A G"; frequencies " 0.509433962264151 0.490566037735849"; depth 53 ; unknown ; synonymous GL192658.1 samtools variation 1585804 1585804 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192659.1 samtools variation 34685 34685 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; synonymous GL192659.1 samtools variation 42245 42245 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192659.1 samtools variation 48476 48476 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192659.1 samtools variation 58544 58544 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 25 ; known ; N/A GL192659.1 samtools variation 58579 58579 . . . alleles " T G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192659.1 samtools variation 58658 58658 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192659.1 samtools variation 60573 60573 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192659.1 samtools variation 60882 60882 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192659.1 samtools variation 60931 60931 . . . alleles " C G"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192659.1 samtools variation 61037 61037 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL192659.1 samtools variation 61083 61083 . . . alleles " A G"; frequencies " 0.763157894736842 0.236842105263158"; depth 76 ; known ; N/A GL192659.1 samtools variation 61815 61815 . . . alleles " A T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192659.1 samtools variation 109425 109425 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 52 ; known ; N/A GL192659.1 samtools variation 348549 348549 . . . alleles " G A"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; non-synonymous GL192659.1 samtools variation 364506 364506 . . . alleles " G C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192659.1 samtools variation 377891 377891 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192659.1 samtools variation 562859 562859 . . . alleles " C G"; frequencies " 0.49874686716792 0.50125313283208"; depth 399 ; known ; synonymous GL192659.1 samtools variation 568875 568875 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192659.1 samtools variation 609538 609538 . . . alleles " T C"; frequencies " 0.255813953488372 0.744186046511628"; depth 86 ; unknown ; non-synonymous GL192659.1 samtools variation 612303 612303 . . . alleles " A C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192659.1 samtools variation 632006 632006 . . . alleles " T A"; frequencies " 0.65625 0.34375"; depth 256 ; known ; N/A GL192659.1 samtools variation 633321 633321 . . . alleles " C T"; frequencies " 0.405594405594406 0.594405594405594"; depth 143 ; known ; N/A GL192659.1 samtools variation 633658 633658 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 72 ; unknown ; N/A GL192659.1 samtools variation 633941 633941 . . . alleles " A G"; frequencies " 0.756410256410256 0.243589743589744"; depth 234 ; unknown ; N/A GL192659.1 samtools variation 633972 633972 . . . alleles " C G"; frequencies " 0.783050847457627 0.216949152542373"; depth 295 ; unknown ; N/A GL192659.1 samtools variation 634978 634978 . . . alleles " T C"; frequencies " 0.792079207920792 0.207920792079208"; depth 101 ; unknown ; N/A GL192659.1 samtools variation 635632 635632 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 135 ; unknown ; N/A GL192659.1 samtools variation 636865 636865 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192659.1 samtools variation 638485 638485 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 30 ; unknown ; N/A GL192659.1 samtools variation 638572 638572 . . . alleles " C T"; frequencies " 0.475 0.525"; depth 40 ; unknown ; N/A GL192659.1 samtools variation 639298 639298 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192659.1 samtools variation 639331 639331 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL192659.1 samtools variation 639363 639363 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192659.1 samtools variation 639613 639613 . . . alleles " T C"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; unknown ; N/A GL192659.1 samtools variation 640039 640039 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192659.1 samtools variation 640535 640535 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192659.1 samtools variation 640675 640675 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192659.1 samtools variation 641221 641221 . . . alleles " T C"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; unknown ; N/A GL192659.1 samtools variation 641300 641300 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192659.1 samtools variation 641301 641301 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192659.1 samtools variation 641400 641400 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192659.1 samtools variation 641675 641675 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192659.1 samtools variation 662784 662784 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192659.1 samtools variation 663864 663864 . . . alleles " C G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192659.1 samtools variation 671085 671085 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192659.1 samtools variation 673306 673306 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192659.1 samtools variation 777263 777263 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; synonymous GL192659.1 samtools variation 784416 784416 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192659.1 samtools variation 785532 785532 . . . alleles " T A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192659.1 samtools variation 786356 786356 . . . alleles " C A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192659.1 samtools variation 786401 786401 . . . alleles " G C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192659.1 samtools variation 787849 787849 . . . alleles " C T"; frequencies " 0.757142857142857 0.242857142857143"; depth 70 ; unknown ; N/A GL192659.1 samtools variation 790059 790059 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192659.1 samtools variation 790164 790164 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192659.1 samtools variation 833626 833626 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192659.1 samtools variation 833649 833649 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192659.1 samtools variation 856335 856335 . . . alleles " T C"; frequencies " 0.629139072847682 0.370860927152318"; depth 604 ; unknown ; synonymous GL192659.1 samtools variation 866898 866898 . . . alleles " G A"; frequencies " 0.697885196374622 0.302114803625378"; depth 331 ; unknown ; N/A GL192659.1 samtools variation 867105 867105 . . . alleles " G A"; frequencies " 0.723404255319149 0.276595744680851"; depth 470 ; known ; N/A GL192659.1 samtools variation 868283 868283 . . . alleles " G A"; frequencies " 0.682242990654206 0.317757009345794"; depth 107 ; unknown ; N/A GL192659.1 samtools variation 869721 869721 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 78 ; known ; N/A GL192659.1 samtools variation 872683 872683 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 126 ; unknown ; N/A GL192659.1 samtools variation 874126 874126 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL192659.1 samtools variation 875139 875139 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 60 ; unknown ; N/A GL192659.1 samtools variation 875521 875521 . . . alleles " A G"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; unknown ; N/A GL192659.1 samtools variation 877266 877266 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL192659.1 samtools variation 878721 878721 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 64 ; unknown ; N/A GL192659.1 samtools variation 878811 878811 . . . alleles " A G"; frequencies " 0.738461538461539 0.261538461538462"; depth 65 ; unknown ; N/A GL192659.1 samtools variation 880266 880266 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 88 ; unknown ; N/A GL192659.1 samtools variation 882033 882033 . . . alleles " A G"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; N/A GL192659.1 samtools variation 882514 882514 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192659.1 samtools variation 883871 883871 . . . alleles " T G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192659.1 samtools variation 884058 884058 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192659.1 samtools variation 884598 884598 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192659.1 samtools variation 887507 887507 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192659.1 samtools variation 888347 888347 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL192659.1 samtools variation 888448 888448 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; known ; N/A GL192659.1 samtools variation 888459 888459 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL192659.1 samtools variation 891441 891441 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 85 ; unknown ; N/A GL192659.1 samtools variation 891695 891695 . . . alleles " T A"; frequencies " 0.685185185185185 0.314814814814815"; depth 108 ; unknown ; N/A GL192659.1 samtools variation 894820 894820 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192659.1 samtools variation 898874 898874 . . . alleles " G A"; frequencies " 0.574712643678161 0.425287356321839"; depth 87 ; unknown ; synonymous GL192659.1 samtools variation 899432 899432 . . . alleles " A G"; frequencies " 0.706766917293233 0.293233082706767"; depth 133 ; unknown ; synonymous GL192659.1 samtools variation 901288 901288 . . . alleles " C T"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192659.1 samtools variation 901717 901717 . . . alleles " T G"; frequencies " 0.695364238410596 0.304635761589404"; depth 151 ; unknown ; synonymous GL192659.1 samtools variation 901768 901768 . . . alleles " C T"; frequencies " 0.520833333333333 0.479166666666667"; depth 144 ; unknown ; synonymous GL192659.1 samtools variation 902806 902806 . . . alleles " A G"; frequencies " 0.778210116731518 0.221789883268482"; depth 257 ; unknown ; N/A GL192659.1 samtools variation 928295 928295 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; non-synonymous GL192659.1 samtools variation 928477 928477 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; synonymous GL192659.1 samtools variation 946161 946161 . . . alleles " C A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192659.1 samtools variation 955615 955615 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192659.1 samtools variation 1090636 1090636 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192659.1 samtools variation 1096294 1096294 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192659.1 samtools variation 1096985 1096985 . . . alleles " C T"; frequencies " 0.675 0.325"; depth 120 ; unknown ; non-synonymous GL192659.1 samtools variation 1097008 1097008 . . . alleles " T C"; frequencies " 0.786324786324786 0.213675213675214"; depth 117 ; unknown ; synonymous GL192659.1 samtools variation 1097154 1097154 . . . alleles " T C"; frequencies " 0.786259541984733 0.213740458015267"; depth 262 ; unknown ; non-synonymous GL192659.1 samtools variation 1097299 1097299 . . . alleles " T G"; frequencies " 0.694980694980695 0.305019305019305"; depth 518 ; unknown ; synonymous GL192659.1 samtools variation 1099493 1099493 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192659.1 samtools variation 1102840 1102840 . . . alleles " G A"; frequencies " 0.796296296296296 0.203703703703704"; depth 216 ; unknown ; N/A GL192659.1 samtools variation 1103531 1103531 . . . alleles " G A"; frequencies " 0.792682926829268 0.207317073170732"; depth 164 ; unknown ; N/A GL192659.1 samtools variation 1105229 1105229 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192659.1 samtools variation 1179822 1179822 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192659.1 samtools variation 1180480 1180480 . . . alleles " C G"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192659.1 samtools variation 1184497 1184497 . . . alleles " A G"; frequencies " 0.206666666666667 0.793333333333333"; depth 150 ; known ; N/A GL192659.1 samtools variation 1210885 1210885 . . . alleles " G A"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192659.1 samtools variation 1215328 1215328 . . . alleles " G A"; frequencies " 0.703125 0.296875"; depth 64 ; known ; non-synonymous GL192659.1 samtools variation 1215435 1215435 . . . alleles " A G"; frequencies " 0.278688524590164 0.721311475409836"; depth 61 ; known ; N/A GL192660.1 samtools variation 180854 180854 . . . alleles " C A"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; N/A GL192660.1 samtools variation 241790 241790 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192660.1 samtools variation 288550 288550 . . . alleles " A G"; frequencies " 0.709090909090909 0.290909090909091"; depth 55 ; known ; N/A GL192660.1 samtools variation 297073 297073 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; N/A GL192660.1 samtools variation 392921 392921 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192660.1 samtools variation 393485 393485 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192660.1 samtools variation 504946 504946 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 50 ; unknown ; N/A GL192660.1 samtools variation 504976 504976 . . . alleles " A G"; frequencies " 0.603448275862069 0.396551724137931"; depth 58 ; unknown ; N/A GL192660.1 samtools variation 506838 506838 . . . alleles " C T"; frequencies " 0.707236842105263 0.289473684210526"; depth 304 ; known ; non-synonymous GL192660.1 samtools variation 508474 508474 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192660.1 samtools variation 508499 508499 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192660.1 samtools variation 508835 508835 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192660.1 samtools variation 509710 509710 . . . alleles " G A"; frequencies " 0.65625 0.34375"; depth 1280 ; unknown ; synonymous GL192660.1 samtools variation 527233 527233 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192660.1 samtools variation 531509 531509 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192660.1 samtools variation 540286 540286 . . . alleles " T A"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; unknown ; N/A GL192662.1 samtools variation 66910 66910 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192662.1 samtools variation 114718 114718 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192662.1 samtools variation 126368 126368 . . . alleles " G A"; frequencies " 0.607692307692308 0.392307692307692"; depth 130 ; unknown ; N/A GL192662.1 samtools variation 126511 126511 . . . alleles " C T"; frequencies " 0.764227642276423 0.235772357723577"; depth 123 ; unknown ; N/A GL192662.1 samtools variation 131238 131238 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192662.1 samtools variation 131373 131373 . . . alleles " G T"; frequencies " 0.291666666666667 0.708333333333333"; depth 48 ; known ; N/A GL192662.1 samtools variation 154982 154982 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192662.1 samtools variation 166646 166646 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192662.1 samtools variation 177683 177683 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192662.1 samtools variation 314781 314781 . . . alleles " A G"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL192662.1 samtools variation 318918 318918 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192662.1 samtools variation 323189 323189 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192662.1 samtools variation 324454 324454 . . . alleles " G T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192662.1 samtools variation 324537 324537 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192662.1 samtools variation 329189 329189 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192662.1 samtools variation 331253 331253 . . . alleles " T G"; frequencies " 0.579710144927536 0.420289855072464"; depth 69 ; known ; N/A GL192662.1 samtools variation 355140 355140 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192662.1 samtools variation 373105 373105 . . . alleles " G A"; frequencies " 0.765957446808511 0.234042553191489"; depth 47 ; unknown ; N/A GL192662.1 samtools variation 373159 373159 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 72 ; unknown ; N/A GL192662.1 samtools variation 380632 380632 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192662.1 samtools variation 390746 390746 . . . alleles " G A"; frequencies " 0.629032258064516 0.370967741935484"; depth 62 ; unknown ; synonymous GL192662.1 samtools variation 437008 437008 . . . alleles " T G"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192662.1 samtools variation 437426 437426 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192662.1 samtools variation 440528 440528 . . . alleles " T C"; frequencies " 0.490196078431373 0.509803921568627"; depth 51 ; unknown ; synonymous GL192662.1 samtools variation 456414 456414 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192662.1 samtools variation 457614 457614 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192662.1 samtools variation 511510 511510 . . . alleles " T C"; frequencies " 0.495145631067961 0.504854368932039"; depth 206 ; unknown ; N/A GL192662.1 samtools variation 511631 511631 . . . alleles " C A"; frequencies " 0.573002754820937 0.426997245179063"; depth 363 ; unknown ; non-synonymous GL192662.1 samtools variation 511634 511634 . . . alleles " A G"; frequencies " 0.557142857142857 0.442857142857143"; depth 350 ; unknown ; non-synonymous GL192662.1 samtools variation 525380 525380 . . . alleles " C T"; frequencies " 0.583850931677019 0.416149068322981"; depth 161 ; unknown ; synonymous GL192662.1 samtools variation 527829 527829 . . . alleles " A G"; frequencies " 0.701298701298701 0.298701298701299"; depth 77 ; unknown ; synonymous GL192662.1 samtools variation 554292 554292 . . . alleles " C T"; frequencies " 0.606164383561644 0.393835616438356"; depth 292 ; unknown ; synonymous GL192662.1 samtools variation 556005 556005 . . . alleles " C T"; frequencies " 0.776 0.224"; depth 125 ; unknown ; N/A GL192662.1 samtools variation 556031 556031 . . . alleles " A G"; frequencies " 0.794736842105263 0.205263157894737"; depth 190 ; unknown ; N/A GL192665.1 samtools variation 17982 17982 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192665.1 samtools variation 21771 21771 . . . alleles " C T"; frequencies " 0.203703703703704 0.796296296296296"; depth 54 ; known ; N/A GL192665.1 samtools variation 22630 22630 . . . alleles " G T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192665.1 samtools variation 22635 22635 . . . alleles " A C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192665.1 samtools variation 23388 23388 . . . alleles " A G"; frequencies " 0.635245901639344 0.364754098360656"; depth 244 ; known ; synonymous GL192665.1 samtools variation 23950 23950 . . . alleles " C T"; frequencies " 0.460674157303371 0.539325842696629"; depth 89 ; unknown ; non-synonymous GL192665.1 samtools variation 24113 24113 . . . alleles " C T"; frequencies " 0.452830188679245 0.547169811320755"; depth 212 ; unknown ; synonymous GL192665.1 samtools variation 24956 24956 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192665.1 samtools variation 25951 25951 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192665.1 samtools variation 26027 26027 . . . alleles " T A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192665.1 samtools variation 26173 26173 . . . alleles " C A"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192665.1 samtools variation 26411 26411 . . . alleles " T G"; frequencies " 0.38860103626943 0.61139896373057"; depth 193 ; unknown ; non-synonymous GL192665.1 samtools variation 26571 26571 . . . alleles " A G"; frequencies " 0.302024291497976 0.697975708502024"; depth 1235 ; unknown ; N/A GL192665.1 samtools variation 26736 26736 . . . alleles " C T"; frequencies " 0.511827956989247 0.488172043010753"; depth 465 ; unknown ; N/A GL192665.1 samtools variation 26857 26857 . . . alleles " G A"; frequencies " 0.345505617977528 0.654494382022472"; depth 356 ; unknown ; N/A GL192665.1 samtools variation 26910 26910 . . . alleles " G A"; frequencies " 0.352564102564103 0.647435897435897"; depth 312 ; unknown ; N/A GL192665.1 samtools variation 26996 26996 . . . alleles " T C"; frequencies " 0.566666666666667 0.433333333333333"; depth 180 ; unknown ; N/A GL192665.1 samtools variation 27091 27091 . . . alleles " C G"; frequencies " 0.783018867924528 0.216981132075472"; depth 212 ; unknown ; N/A GL192665.1 samtools variation 27224 27224 . . . alleles " A T"; frequencies " 0.342857142857143 0.657142857142857"; depth 35 ; unknown ; N/A GL192665.1 samtools variation 27305 27305 . . . alleles " A T"; frequencies " 0.431372549019608 0.568627450980392"; depth 357 ; unknown ; N/A GL192665.1 samtools variation 27324 27324 . . . alleles " T A"; frequencies " 0.459016393442623 0.540983606557377"; depth 488 ; unknown ; N/A GL192665.1 samtools variation 27573 27573 . . . alleles " T C"; frequencies " 0.332179930795848 0.664359861591695"; depth 289 ; unknown ; N/A GL192665.1 samtools variation 27667 27667 . . . alleles " C T"; frequencies " 0.512422360248447 0.487577639751553"; depth 322 ; unknown ; N/A GL192665.1 samtools variation 28224 28224 . . . alleles " A C"; frequencies " 0.52991452991453 0.47008547008547"; depth 234 ; unknown ; N/A GL192665.1 samtools variation 28289 28289 . . . alleles " G T"; frequencies " 0.431818181818182 0.568181818181818"; depth 88 ; unknown ; N/A GL192665.1 samtools variation 28351 28351 . . . alleles " T C"; frequencies " 0.405405405405405 0.594594594594595"; depth 74 ; unknown ; N/A GL192665.1 samtools variation 28530 28530 . . . alleles " G T"; frequencies " 0.663793103448276 0.336206896551724"; depth 348 ; unknown ; N/A GL192665.1 samtools variation 28555 28555 . . . alleles " G A"; frequencies " 0.482142857142857 0.517857142857143"; depth 280 ; unknown ; N/A GL192665.1 samtools variation 29044 29044 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL192665.1 samtools variation 29312 29312 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192665.1 samtools variation 29537 29537 . . . alleles " A G"; frequencies " 0.630434782608696 0.369565217391304"; depth 46 ; unknown ; N/A GL192665.1 samtools variation 30120 30120 . . . alleles " T C"; frequencies " 0.308823529411765 0.691176470588235"; depth 68 ; unknown ; N/A GL192665.1 samtools variation 30198 30198 . . . alleles " A C"; frequencies " 0.382352941176471 0.617647058823529"; depth 68 ; unknown ; N/A GL192665.1 samtools variation 30397 30397 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192665.1 samtools variation 30501 30501 . . . alleles " A G"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; unknown ; N/A GL192665.1 samtools variation 30707 30707 . . . alleles " C T"; frequencies " 0.76271186440678 0.23728813559322"; depth 118 ; unknown ; N/A GL192665.1 samtools variation 30813 30813 . . . alleles " C T"; frequencies " 0.62 0.38"; depth 100 ; unknown ; N/A GL192665.1 samtools variation 30826 30826 . . . alleles " A C"; frequencies " 0.697916666666667 0.302083333333333"; depth 96 ; unknown ; N/A GL192665.1 samtools variation 30893 30893 . . . alleles " G A"; frequencies " 0.680851063829787 0.319148936170213"; depth 47 ; unknown ; N/A GL192665.1 samtools variation 31238 31238 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL192665.1 samtools variation 31380 31380 . . . alleles " G T"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192665.1 samtools variation 31433 31433 . . . alleles " T C"; frequencies " 0.241379310344828 0.758620689655172"; depth 58 ; unknown ; N/A GL192665.1 samtools variation 31710 31710 . . . alleles " C T"; frequencies " 0.704225352112676 0.295774647887324"; depth 71 ; unknown ; N/A GL192665.1 samtools variation 32096 32096 . . . alleles " C T"; frequencies " 0.671232876712329 0.328767123287671"; depth 73 ; unknown ; N/A GL192665.1 samtools variation 32514 32514 . . . alleles " T C"; frequencies " 0.296296296296296 0.703703703703704"; depth 54 ; unknown ; N/A GL192665.1 samtools variation 32548 32548 . . . alleles " A G"; frequencies " 0.673076923076923 0.326923076923077"; depth 52 ; unknown ; N/A GL192665.1 samtools variation 32751 32751 . . . alleles " A C"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192665.1 samtools variation 32957 32957 . . . alleles " C G"; frequencies " 0.692307692307692 0.307692307692308"; depth 52 ; unknown ; N/A GL192665.1 samtools variation 33310 33310 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 81 ; unknown ; N/A GL192665.1 samtools variation 33759 33759 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192665.1 samtools variation 34244 34244 . . . alleles " G A"; frequencies " 0.558139534883721 0.441860465116279"; depth 43 ; unknown ; N/A GL192665.1 samtools variation 34300 34300 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192665.1 samtools variation 34340 34340 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192665.1 samtools variation 34368 34368 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192665.1 samtools variation 34393 34393 . . . alleles " C T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192665.1 samtools variation 34465 34465 . . . alleles " A G"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; unknown ; N/A GL192665.1 samtools variation 34581 34581 . . . alleles " G A"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192665.1 samtools variation 34587 34587 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192665.1 samtools variation 35319 35319 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192665.1 samtools variation 36120 36120 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192665.1 samtools variation 137333 137333 . . . alleles " G A"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL192665.1 samtools variation 137493 137493 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192665.1 samtools variation 137936 137936 . . . alleles " G A"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; known ; N/A GL192665.1 samtools variation 138584 138584 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 77 ; known ; N/A GL192665.1 samtools variation 139283 139283 . . . alleles " G T"; frequencies " 0.354651162790698 0.645348837209302"; depth 344 ; known ; N/A GL192665.1 samtools variation 153500 153500 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; known ; N/A GL192665.1 samtools variation 156316 156316 . . . alleles " T C"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL192665.1 samtools variation 159332 159332 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192665.1 samtools variation 164558 164558 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192665.1 samtools variation 168987 168987 . . . alleles " G A"; frequencies " 0.687272727272727 0.312727272727273"; depth 275 ; known ; N/A GL192665.1 samtools variation 169125 169125 . . . alleles " G A"; frequencies " 0.44367816091954 0.55632183908046"; depth 435 ; known ; N/A GL192665.1 samtools variation 169195 169195 . . . alleles " C T"; frequencies " 0.384991843393148 0.615008156606852"; depth 613 ; known ; N/A GL192665.1 samtools variation 170549 170549 . . . alleles " C A"; frequencies " 0.285714285714286 0.714285714285714"; depth 63 ; known ; N/A GL192665.1 samtools variation 170868 170868 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192665.1 samtools variation 209151 209151 . . . alleles " G T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192665.1 samtools variation 209355 209355 . . . alleles " C G"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; known ; N/A GL192665.1 samtools variation 209515 209515 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL192665.1 samtools variation 549614 549614 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; synonymous GL192665.1 samtools variation 835629 835629 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192665.1 samtools variation 835642 835642 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192665.1 samtools variation 848669 848669 . . . alleles " T C"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; synonymous GL192665.1 samtools variation 1358731 1358731 . . . alleles " T G"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL192665.1 samtools variation 1498837 1498837 . . . alleles " G T"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192665.1 samtools variation 1500492 1500492 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192665.1 samtools variation 1511740 1511740 . . . alleles " G A"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; unknown ; N/A GL192666.1 samtools variation 85546 85546 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192666.1 samtools variation 94193 94193 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL192666.1 samtools variation 134844 134844 . . . alleles " T C"; frequencies " 0.641791044776119 0.358208955223881"; depth 134 ; known ; N/A GL192666.1 samtools variation 795936 795936 . . . alleles " A G"; frequencies " 0.256410256410256 0.743589743589744"; depth 39 ; unknown ; N/A GL192666.1 samtools variation 816778 816778 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; synonymous GL192666.1 samtools variation 820570 820570 . . . alleles " T C"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; synonymous GL192666.1 samtools variation 827159 827159 . . . alleles " A T"; frequencies " 0.287671232876712 0.712328767123288"; depth 146 ; unknown ; N/A GL192666.1 samtools variation 839899 839899 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 52 ; unknown ; synonymous GL192666.1 samtools variation 1191881 1191881 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; N/A GL192666.1 samtools variation 1248389 1248389 . . . alleles " T C"; frequencies " 0.326530612244898 0.673469387755102"; depth 49 ; unknown ; N/A GL192666.1 samtools variation 1266320 1266320 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 156 ; known ; N/A GL192667.1 samtools variation 26395 26395 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192667.1 samtools variation 28844 28844 . . . alleles " G A"; frequencies " 0.458823529411765 0.541176470588235"; depth 85 ; known ; N/A GL192667.1 samtools variation 159987 159987 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL192667.1 samtools variation 260722 260722 . . . alleles " C T"; frequencies " 0.542857142857143 0.457142857142857"; depth 70 ; unknown ; N/A GL192667.1 samtools variation 300141 300141 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 112 ; known ; N/A GL192667.1 samtools variation 301332 301332 . . . alleles " G A"; frequencies " 0.542253521126761 0.457746478873239"; depth 142 ; known ; N/A GL192667.1 samtools variation 302163 302163 . . . alleles " G A"; frequencies " 0.723076923076923 0.276923076923077"; depth 65 ; known ; N/A GL192667.1 samtools variation 307230 307230 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192667.1 samtools variation 308033 308033 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192667.1 samtools variation 385081 385081 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192667.1 samtools variation 522779 522779 . . . alleles " C T"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; synonymous GL192667.1 samtools variation 524705 524705 . . . alleles " G A"; frequencies " 0.474576271186441 0.525423728813559"; depth 59 ; known ; synonymous GL192667.1 samtools variation 528340 528340 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192667.1 samtools variation 537305 537305 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192667.1 samtools variation 537736 537736 . . . alleles " A G"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; known ; N/A GL192667.1 samtools variation 618446 618446 . . . alleles " A G"; frequencies " 0.772151898734177 0.227848101265823"; depth 79 ; unknown ; non-synonymous GL192667.1 samtools variation 626519 626519 . . . alleles " A G"; frequencies " 0.427272727272727 0.572727272727273"; depth 220 ; known ; synonymous GL192667.1 samtools variation 627384 627384 . . . alleles " T C"; frequencies " 0.256 0.744"; depth 125 ; unknown ; non-synonymous GL192667.1 samtools variation 632228 632228 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 189 ; known ; synonymous GL192667.1 samtools variation 637790 637790 . . . alleles " C A"; frequencies " 0.436781609195402 0.563218390804598"; depth 261 ; known ; N/A GL192667.1 samtools variation 639935 639935 . . . alleles " T C"; frequencies " 0.591666666666667 0.408333333333333"; depth 120 ; known ; synonymous GL192667.1 samtools variation 640907 640907 . . . alleles " G A"; frequencies " 0.772277227722772 0.227722772277228"; depth 101 ; unknown ; synonymous GL192667.1 samtools variation 641486 641486 . . . alleles " C T"; frequencies " 0.763636363636364 0.236363636363636"; depth 55 ; unknown ; synonymous GL192667.1 samtools variation 685565 685565 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192667.1 samtools variation 705987 705987 . . . alleles " A G"; frequencies " 0.528985507246377 0.471014492753623"; depth 138 ; known ; synonymous GL192667.1 samtools variation 713889 713889 . . . alleles " A G"; frequencies " 0.795918367346939 0.204081632653061"; depth 49 ; unknown ; synonymous GL192667.1 samtools variation 722194 722194 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192667.1 samtools variation 736951 736951 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192667.1 samtools variation 779018 779018 . . . alleles " T C"; frequencies " 0.753521126760563 0.23943661971831"; depth 142 ; unknown ; N/A GL192667.1 samtools variation 787960 787960 . . . alleles " G A"; frequencies " 0.490740740740741 0.509259259259259"; depth 108 ; known ; N/A GL192667.1 samtools variation 788549 788549 . . . alleles " G A"; frequencies " 0.721649484536082 0.278350515463918"; depth 97 ; unknown ; N/A GL192667.1 samtools variation 788964 788964 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 48 ; unknown ; N/A GL192667.1 samtools variation 823385 823385 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192667.1 samtools variation 826284 826284 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192667.1 samtools variation 836842 836842 . . . alleles " A T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192667.1 samtools variation 843514 843514 . . . alleles " G A"; frequencies " 0.351063829787234 0.648936170212766"; depth 188 ; known ; N/A GL192667.1 samtools variation 845410 845410 . . . alleles " C T"; frequencies " 0.485380116959064 0.514619883040936"; depth 513 ; known ; N/A GL192667.1 samtools variation 846695 846695 . . . alleles " C T"; frequencies " 0.513157894736842 0.486842105263158"; depth 1292 ; known ; N/A GL192667.1 samtools variation 910079 910079 . . . alleles " A G"; frequencies " 0.336700336700337 0.663299663299663"; depth 297 ; known ; N/A GL192667.1 samtools variation 913649 913649 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 135 ; unknown ; synonymous GL192667.1 samtools variation 919941 919941 . . . alleles " G A"; frequencies " 0.694117647058824 0.305882352941176"; depth 85 ; unknown ; synonymous GL192667.1 samtools variation 1007194 1007194 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL192667.1 samtools variation 1017301 1017301 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192667.1 samtools variation 1019942 1019942 . . . alleles " T G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192667.1 samtools variation 1041372 1041372 . . . alleles " T C"; frequencies " 0.759124087591241 0.240875912408759"; depth 274 ; known ; N/A GL192667.1 samtools variation 1042054 1042054 . . . alleles " C T"; frequencies " 0.786764705882353 0.213235294117647"; depth 136 ; known ; N/A GL192667.1 samtools variation 1046143 1046143 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192667.1 samtools variation 1052777 1052777 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192667.1 samtools variation 1087083 1087083 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192667.1 samtools variation 1093055 1093055 . . . alleles " T C"; frequencies " 0.576086956521739 0.423913043478261"; depth 92 ; known ; N/A GL192667.1 samtools variation 1123256 1123256 . . . alleles " A C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL192667.1 samtools variation 1132677 1132677 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192667.1 samtools variation 1146033 1146033 . . . alleles " C T"; frequencies " 0.38135593220339 0.61864406779661"; depth 118 ; known ; N/A GL192667.1 samtools variation 1176190 1176190 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 68 ; known ; N/A GL192667.1 samtools variation 1187505 1187505 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 133 ; known ; N/A GL192667.1 samtools variation 1198766 1198766 . . . alleles " C T"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; known ; N/A GL192667.1 samtools variation 1202117 1202117 . . . alleles " T A"; frequencies " 0.781818181818182 0.218181818181818"; depth 55 ; unknown ; N/A GL192667.1 samtools variation 1206949 1206949 . . . alleles " C G"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; known ; N/A GL192667.1 samtools variation 1218021 1218021 . . . alleles " C A"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL192667.1 samtools variation 1218088 1218088 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL192667.1 samtools variation 1218538 1218538 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; known ; N/A GL192667.1 samtools variation 1222057 1222057 . . . alleles " A G"; frequencies " 0.493917274939173 0.506082725060827"; depth 411 ; known ; N/A GL192667.1 samtools variation 1225418 1225418 . . . alleles " A G"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; known ; N/A GL192667.1 samtools variation 1304885 1304885 . . . alleles " A T"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; known ; N/A GL192667.1 samtools variation 1318146 1318146 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 51 ; unknown ; synonymous GL192667.1 samtools variation 1318275 1318275 . . . alleles " A C"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; synonymous GL192667.1 samtools variation 1580960 1580960 . . . alleles " A C"; frequencies " 0.370967741935484 0.629032258064516"; depth 62 ; known ; N/A GL192668.1 samtools variation 1210099 1210099 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; synonymous GL192668.1 samtools variation 1389864 1389864 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 66 ; unknown ; non-synonymous GL192668.1 samtools variation 1430885 1430885 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192668.1 samtools variation 1431475 1431475 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; N/A GL192668.1 samtools variation 1433116 1433116 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192668.1 samtools variation 1435282 1435282 . . . alleles " A G"; frequencies " 0.258620689655172 0.741379310344828"; depth 58 ; known ; N/A GL192668.1 samtools variation 1436064 1436064 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; unknown ; N/A GL192668.1 samtools variation 1438043 1438043 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192669.1 samtools variation 1147469 1147469 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 76 ; unknown ; N/A GL192669.1 samtools variation 1147540 1147540 . . . alleles " T C"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; unknown ; N/A GL192669.1 samtools variation 1148431 1148431 . . . alleles " C G"; frequencies " 0.672566371681416 0.327433628318584"; depth 113 ; unknown ; N/A GL192669.1 samtools variation 1154221 1154221 . . . alleles " C A"; frequencies " 0.577777777777778 0.422222222222222"; depth 45 ; unknown ; N/A GL192669.1 samtools variation 1155495 1155495 . . . alleles " G T"; frequencies " 0.504444444444444 0.495555555555556"; depth 900 ; unknown ; N/A GL192669.1 samtools variation 1156976 1156976 . . . alleles " A C"; frequencies " 0.373493975903614 0.626506024096386"; depth 83 ; unknown ; N/A GL192669.1 samtools variation 1161383 1161383 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192669.1 samtools variation 1162446 1162446 . . . alleles " G A"; frequencies " 0.684782608695652 0.315217391304348"; depth 92 ; unknown ; N/A GL192669.1 samtools variation 1412019 1412019 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192669.1 samtools variation 1414146 1414146 . . . alleles " C T"; frequencies " 0.542372881355932 0.457627118644068"; depth 177 ; unknown ; N/A GL192669.1 samtools variation 1414766 1414766 . . . alleles " C T"; frequencies " 0.482252141982864 0.516523867809058"; depth 817 ; unknown ; N/A GL192669.1 samtools variation 1415163 1415163 . . . alleles " C G"; frequencies " 0.589595375722543 0.410404624277457"; depth 173 ; unknown ; N/A GL192669.1 samtools variation 1416512 1416512 . . . alleles " C A"; frequencies " 0.663793103448276 0.336206896551724"; depth 116 ; unknown ; N/A GL192669.1 samtools variation 1416735 1416735 . . . alleles " C T"; frequencies " 0.48868778280543 0.51131221719457"; depth 221 ; unknown ; non-synonymous GL192669.1 samtools variation 1417326 1417326 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192669.1 samtools variation 1419599 1419599 . . . alleles " G A"; frequencies " 0.790697674418605 0.209302325581395"; depth 215 ; unknown ; non-synonymous GL192669.1 samtools variation 1419638 1419638 . . . alleles " G A"; frequencies " 0.597402597402597 0.402597402597403"; depth 231 ; unknown ; synonymous GL192669.1 samtools variation 1419667 1419667 . . . alleles " T C"; frequencies " 0.55 0.441666666666667"; depth 240 ; unknown ; non-synonymous GL192669.1 samtools variation 1420984 1420984 . . . alleles " C G"; frequencies " 0.458904109589041 0.541095890410959"; depth 146 ; unknown ; non-synonymous GL192669.1 samtools variation 1421643 1421643 . . . alleles " A G"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL192669.1 samtools variation 1429689 1429689 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192671.1 samtools variation 833350 833350 . . . alleles " G A"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; non-synonymous GL192671.1 samtools variation 1130804 1130804 . . . alleles " T G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192671.1 samtools variation 1166957 1166957 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; known ; N/A GL192671.1 samtools variation 1167049 1167049 . . . alleles " A G"; frequencies " 0.511111111111111 0.488888888888889"; depth 45 ; known ; N/A GL192671.1 samtools variation 1167414 1167414 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192671.1 samtools variation 1170475 1170475 . . . alleles " G A"; frequencies " 0.381818181818182 0.618181818181818"; depth 55 ; known ; N/A GL192671.1 samtools variation 1429662 1429662 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192671.1 samtools variation 1447396 1447396 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 39 ; known ; synonymous GL192671.1 samtools variation 1448610 1448610 . . . alleles " T A"; frequencies " 0.56140350877193 0.43859649122807"; depth 57 ; known ; non-synonymous GL192671.1 samtools variation 1451380 1451380 . . . alleles " T C"; frequencies " 0.557692307692308 0.442307692307692"; depth 52 ; known ; N/A GL192671.1 samtools variation 1451820 1451820 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; N/A GL192671.1 samtools variation 1451917 1451917 . . . alleles " C A"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; known ; N/A GL192671.1 samtools variation 1451985 1451985 . . . alleles " A T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192672.1 samtools variation 265644 265644 . . . alleles " C A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; non-synonymous GL192672.1 samtools variation 661416 661416 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192672.1 samtools variation 769073 769073 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192672.1 samtools variation 857132 857132 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192672.1 samtools variation 1361547 1361547 . . . alleles " A G"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL192672.1 samtools variation 1362650 1362650 . . . alleles " A G"; frequencies " 0.476744186046512 0.523255813953488"; depth 86 ; unknown ; N/A GL192672.1 samtools variation 1362697 1362697 . . . alleles " G A"; frequencies " 0.783783783783784 0.216216216216216"; depth 111 ; unknown ; N/A GL192672.1 samtools variation 1362761 1362761 . . . alleles " G A"; frequencies " 0.76158940397351 0.23841059602649"; depth 151 ; unknown ; N/A GL192672.1 samtools variation 1375009 1375009 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192672.1 samtools variation 1395269 1395269 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192672.1 samtools variation 1395535 1395535 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192672.1 samtools variation 1399117 1399117 . . . alleles " G C"; frequencies " 0.537313432835821 0.417910447761194"; depth 67 ; unknown ; synonymous GL192672.1 samtools variation 1589832 1589832 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192672.1 samtools variation 1600986 1600986 . . . alleles " C G"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL192672.1 samtools variation 1601026 1601026 . . . alleles " A G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL192673.1 samtools variation 817143 817143 . . . alleles " T C"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; unknown ; N/A GL192673.1 samtools variation 823797 823797 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; non-synonymous GL192673.1 samtools variation 824719 824719 . . . alleles " G A"; frequencies " 0.626582278481013 0.373417721518987"; depth 158 ; unknown ; N/A GL192673.1 samtools variation 828557 828557 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 55 ; unknown ; N/A GL192673.1 samtools variation 828629 828629 . . . alleles " C T"; frequencies " 0.609756097560976 0.390243902439024"; depth 41 ; unknown ; N/A GL192673.1 samtools variation 828683 828683 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192673.1 samtools variation 828761 828761 . . . alleles " A G"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; N/A GL192673.1 samtools variation 828976 828976 . . . alleles " G A"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192673.1 samtools variation 829011 829011 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; unknown ; N/A GL192673.1 samtools variation 829076 829076 . . . alleles " C G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192673.1 samtools variation 829207 829207 . . . alleles " A G"; frequencies " 0.426229508196721 0.573770491803279"; depth 61 ; unknown ; N/A GL192673.1 samtools variation 829485 829485 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192673.1 samtools variation 829727 829727 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192673.1 samtools variation 834744 834744 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192673.1 samtools variation 834965 834965 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192673.1 samtools variation 835817 835817 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192673.1 samtools variation 854959 854959 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; synonymous GL192673.1 samtools variation 870107 870107 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192673.1 samtools variation 874710 874710 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 56 ; unknown ; non-synonymous GL192673.1 samtools variation 875057 875057 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL192673.1 samtools variation 875349 875349 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL192673.1 samtools variation 875533 875533 . . . alleles " C T"; frequencies " 0.574074074074074 0.425925925925926"; depth 54 ; unknown ; N/A GL192673.1 samtools variation 875555 875555 . . . alleles " C T"; frequencies " 0.654545454545455 0.345454545454545"; depth 55 ; unknown ; N/A GL192673.1 samtools variation 875816 875816 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL192673.1 samtools variation 875829 875829 . . . alleles " A G"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL192673.1 samtools variation 889337 889337 . . . alleles " A G"; frequencies " 0.516129032258065 0.483870967741935"; depth 62 ; unknown ; synonymous GL192673.1 samtools variation 892068 892068 . . . alleles " C T"; frequencies " 0.797202797202797 0.202797202797203"; depth 143 ; unknown ; synonymous GL192673.1 samtools variation 892098 892098 . . . alleles " C T"; frequencies " 0.771186440677966 0.228813559322034"; depth 118 ; unknown ; synonymous GL192673.1 samtools variation 892205 892205 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192673.1 samtools variation 892234 892234 . . . alleles " A G"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL192673.1 samtools variation 892910 892910 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL192673.1 samtools variation 892999 892999 . . . alleles " G C"; frequencies " 0.645833333333333 0.354166666666667"; depth 96 ; unknown ; N/A GL192673.1 samtools variation 893301 893301 . . . alleles " C G"; frequencies " 0.67175572519084 0.32824427480916"; depth 131 ; unknown ; N/A GL192673.1 samtools variation 893335 893335 . . . alleles " C G"; frequencies " 0.72 0.28"; depth 125 ; unknown ; N/A GL192673.1 samtools variation 893480 893480 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 44 ; unknown ; N/A GL192673.1 samtools variation 893928 893928 . . . alleles " T C"; frequencies " 0.798319327731092 0.201680672268908"; depth 119 ; unknown ; N/A GL192673.1 samtools variation 894026 894026 . . . alleles " C T"; frequencies " 0.748663101604278 0.251336898395722"; depth 187 ; unknown ; N/A GL192673.1 samtools variation 894089 894089 . . . alleles " T G"; frequencies " 0.733333333333333 0.266666666666667"; depth 75 ; unknown ; N/A GL192673.1 samtools variation 938543 938543 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192673.1 samtools variation 940883 940883 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192673.1 samtools variation 1010024 1010024 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192673.1 samtools variation 1010655 1010655 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192673.1 samtools variation 1099139 1099139 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; synonymous GL192673.1 samtools variation 1158831 1158831 . . . alleles " G A"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL192673.1 samtools variation 1158873 1158873 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192673.1 samtools variation 1160067 1160067 . . . alleles " A G"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; N/A GL192673.1 samtools variation 1160183 1160183 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192673.1 samtools variation 1160657 1160657 . . . alleles " C T"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL192673.1 samtools variation 1160662 1160662 . . . alleles " A G"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192673.1 samtools variation 1179907 1179907 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; non-synonymous GL192674.1 samtools variation 154840 154840 . . . alleles " G A"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL192674.1 samtools variation 154892 154892 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192674.1 samtools variation 154957 154957 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192674.1 samtools variation 166361 166361 . . . alleles " T C"; frequencies " 0.640718562874252 0.359281437125749"; depth 167 ; unknown ; non-synonymous GL192674.1 samtools variation 171147 171147 . . . alleles " C A"; frequencies " 0.716216216216216 0.283783783783784"; depth 148 ; unknown ; non-synonymous GL192674.1 samtools variation 171157 171157 . . . alleles " C T"; frequencies " 0.695945945945946 0.304054054054054"; depth 148 ; known ; synonymous GL192674.1 samtools variation 184059 184059 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192674.1 samtools variation 184712 184712 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192674.1 samtools variation 185013 185013 . . . alleles " C G"; frequencies " 0.432432432432432 0.567567567567568"; depth 37 ; unknown ; N/A GL192674.1 samtools variation 185765 185765 . . . alleles " T G"; frequencies " 0.558823529411765 0.441176470588235"; depth 102 ; unknown ; non-synonymous GL192674.1 samtools variation 194557 194557 . . . alleles " G A"; frequencies " 0.339622641509434 0.660377358490566"; depth 106 ; unknown ; non-synonymous GL192674.1 samtools variation 202441 202441 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192674.1 samtools variation 265757 265757 . . . alleles " A G"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192674.1 samtools variation 607333 607333 . . . alleles " G C"; frequencies " 0.793103448275862 0.206896551724138"; depth 87 ; known ; synonymous GL192674.1 samtools variation 622299 622299 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL192674.1 samtools variation 623015 623015 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 50 ; unknown ; N/A GL192674.1 samtools variation 1025754 1025754 . . . alleles " G A"; frequencies " 0.788732394366197 0.211267605633803"; depth 142 ; unknown ; N/A GL192674.1 samtools variation 1031494 1031494 . . . alleles " A C"; frequencies " 0.540229885057471 0.459770114942529"; depth 87 ; unknown ; synonymous GL192674.1 samtools variation 1032722 1032722 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 44 ; unknown ; synonymous GL192674.1 samtools variation 1032957 1032957 . . . alleles " C T"; frequencies " 0.63302752293578 0.36697247706422"; depth 109 ; unknown ; synonymous GL192674.1 samtools variation 1032980 1032980 . . . alleles " G A"; frequencies " 0.603305785123967 0.396694214876033"; depth 121 ; unknown ; synonymous GL192674.1 samtools variation 1034105 1034105 . . . alleles " A T"; frequencies " 0.594594594594595 0.405405405405405"; depth 111 ; unknown ; non-synonymous GL192674.1 samtools variation 1035281 1035281 . . . alleles " T C"; frequencies " 0.622377622377622 0.377622377622378"; depth 143 ; unknown ; synonymous GL192674.1 samtools variation 1038755 1038755 . . . alleles " A G"; frequencies " 0.648148148148148 0.351851851851852"; depth 54 ; unknown ; synonymous GL192674.1 samtools variation 1051846 1051846 . . . alleles " T C"; frequencies " 0.673333333333333 0.326666666666667"; depth 150 ; unknown ; non-synonymous GL192675.1 samtools variation 93272 93272 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; N/A GL192675.1 samtools variation 386814 386814 . . . alleles " G A"; frequencies " 0.290909090909091 0.709090909090909"; depth 55 ; known ; N/A GL192675.1 samtools variation 387498 387498 . . . alleles " G A"; frequencies " 0.786666666666667 0.213333333333333"; depth 75 ; unknown ; N/A GL192675.1 samtools variation 388326 388326 . . . alleles " A G"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; known ; synonymous GL192675.1 samtools variation 396064 396064 . . . alleles " A T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192675.1 samtools variation 512509 512509 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 54 ; unknown ; N/A GL192675.1 samtools variation 518867 518867 . . . alleles " T A"; frequencies " 0.735294117647059 0.264705882352941"; depth 68 ; known ; non-synonymous GL192675.1 samtools variation 530999 530999 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192675.1 samtools variation 581811 581811 . . . alleles " A G"; frequencies " 0.572815533980582 0.427184466019417"; depth 103 ; known ; non-synonymous GL192675.1 samtools variation 582117 582117 . . . alleles " C G"; frequencies " 0.495283018867925 0.504716981132076"; depth 212 ; known ; synonymous GL192675.1 samtools variation 627471 627471 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192675.1 samtools variation 631895 631895 . . . alleles " T A"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL192675.1 samtools variation 632764 632764 . . . alleles " C T"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; known ; N/A GL192675.1 samtools variation 635898 635898 . . . alleles " C T"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192675.1 samtools variation 636078 636078 . . . alleles " A G"; frequencies " 0.459459459459459 0.540540540540541"; depth 37 ; unknown ; N/A GL192675.1 samtools variation 646509 646509 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192675.1 samtools variation 654602 654602 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192675.1 samtools variation 671589 671589 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192675.1 samtools variation 676066 676066 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL192675.1 samtools variation 710748 710748 . . . alleles " C T"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; N/A GL192675.1 samtools variation 1003115 1003115 . . . alleles " G C"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; synonymous GL192675.1 samtools variation 1175722 1175722 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; non-synonymous GL192675.1 samtools variation 1175808 1175808 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; unknown ; synonymous GL192675.1 samtools variation 1239857 1239857 . . . alleles " C T"; frequencies " 0.773480662983425 0.226519337016575"; depth 181 ; unknown ; N/A GL192675.1 samtools variation 1259190 1259190 . . . alleles " A G"; frequencies " 0.773584905660377 0.226415094339623"; depth 53 ; unknown ; N/A GL192675.1 samtools variation 1285197 1285197 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; non-synonymous GL192675.1 samtools variation 1443783 1443783 . . . alleles " C A"; frequencies " 0.41875 0.58125"; depth 480 ; unknown ; N/A GL192675.1 samtools variation 1444556 1444556 . . . alleles " C T"; frequencies " 0.778333333333333 0.221666666666667"; depth 600 ; unknown ; N/A GL192675.1 samtools variation 1444711 1444711 . . . alleles " C T"; frequencies " 0.372058823529412 0.627941176470588"; depth 680 ; unknown ; N/A GL192675.1 samtools variation 1448022 1448022 . . . alleles " C A"; frequencies " 0.214285714285714 0.785714285714286"; depth 42 ; unknown ; N/A GL192675.1 samtools variation 1448211 1448211 . . . alleles " C A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192675.1 samtools variation 1448245 1448245 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192675.1 samtools variation 1449735 1449735 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192675.1 samtools variation 1450875 1450875 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192675.1 samtools variation 1452832 1452832 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 55 ; unknown ; N/A GL192675.1 samtools variation 1453054 1453054 . . . alleles " G A"; frequencies " 0.620689655172414 0.379310344827586"; depth 58 ; unknown ; N/A GL192675.1 samtools variation 1453187 1453187 . . . alleles " G T"; frequencies " 0.533333333333333 0.466666666666667"; depth 45 ; unknown ; N/A GL192675.1 samtools variation 1453350 1453350 . . . alleles " G A"; frequencies " 0.709090909090909 0.290909090909091"; depth 55 ; unknown ; N/A GL192675.1 samtools variation 1466051 1466051 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192675.1 samtools variation 1470893 1470893 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192675.1 samtools variation 1474758 1474758 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192675.1 samtools variation 1490242 1490242 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192675.1 samtools variation 1546426 1546426 . . . alleles " C T"; frequencies " 0.71875 0.28125"; depth 160 ; unknown ; N/A GL192675.1 samtools variation 1546939 1546939 . . . alleles " T C"; frequencies " 0.372222222222222 0.627777777777778"; depth 180 ; unknown ; N/A GL192675.1 samtools variation 1635820 1635820 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 48 ; unknown ; synonymous GL192677.1 samtools variation 250700 250700 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192677.1 samtools variation 250947 250947 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192677.1 samtools variation 250974 250974 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192677.1 samtools variation 251083 251083 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192677.1 samtools variation 253368 253368 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; synonymous GL192677.1 samtools variation 253473 253473 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; synonymous GL192677.1 samtools variation 256632 256632 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; synonymous GL192677.1 samtools variation 256635 256635 . . . alleles " G A"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; synonymous GL192677.1 samtools variation 261424 261424 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; synonymous GL192677.1 samtools variation 387603 387603 . . . alleles " C T"; frequencies " 0.344827586206897 0.655172413793103"; depth 87 ; known ; synonymous GL192677.1 samtools variation 396785 396785 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; N/A GL192677.1 samtools variation 398586 398586 . . . alleles " G T"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192677.1 samtools variation 408732 408732 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; synonymous GL192677.1 samtools variation 416427 416427 . . . alleles " A G"; frequencies " 0.796019900497512 0.203980099502488"; depth 201 ; unknown ; N/A GL192677.1 samtools variation 440158 440158 . . . alleles " A G"; frequencies " 0.771739130434783 0.228260869565217"; depth 92 ; unknown ; N/A GL192677.1 samtools variation 530700 530700 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192677.1 samtools variation 538814 538814 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192677.1 samtools variation 544940 544940 . . . alleles " C T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192677.1 samtools variation 545045 545045 . . . alleles " G A"; frequencies " 0.732673267326733 0.267326732673267"; depth 101 ; unknown ; N/A GL192677.1 samtools variation 556711 556711 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192677.1 samtools variation 647945 647945 . . . alleles " C T"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; known ; N/A GL192677.1 samtools variation 726839 726839 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192677.1 samtools variation 727186 727186 . . . alleles " C G"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL192677.1 samtools variation 729375 729375 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192677.1 samtools variation 730451 730451 . . . alleles " A G"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192677.1 samtools variation 746269 746269 . . . alleles " C A"; frequencies " 0.52 0.48"; depth 50 ; known ; N/A GL192677.1 samtools variation 746977 746977 . . . alleles " A G"; frequencies " 0.540540540540541 0.459459459459459"; depth 37 ; known ; N/A GL192678.1 samtools variation 583683 583683 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; synonymous GL192678.1 samtools variation 626442 626442 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; known ; N/A GL192678.1 samtools variation 627268 627268 . . . alleles " G A"; frequencies " 0.541353383458647 0.458646616541353"; depth 399 ; known ; N/A GL192678.1 samtools variation 629988 629988 . . . alleles " A T"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; N/A GL192678.1 samtools variation 656940 656940 . . . alleles " T C"; frequencies " 0.540540540540541 0.459459459459459"; depth 74 ; unknown ; N/A GL192678.1 samtools variation 658077 658077 . . . alleles " A G"; frequencies " 0.492307692307692 0.507692307692308"; depth 65 ; known ; non-synonymous GL192678.1 samtools variation 727057 727057 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; synonymous GL192678.1 samtools variation 733097 733097 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192678.1 samtools variation 735009 735009 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192678.1 samtools variation 739061 739061 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192678.1 samtools variation 739371 739371 . . . alleles " A G"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL192678.1 samtools variation 740116 740116 . . . alleles " T C"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL192678.1 samtools variation 743440 743440 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192678.1 samtools variation 743441 743441 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192679.1 samtools variation 24325 24325 . . . alleles " A G"; frequencies " 0.4921875 0.5078125"; depth 128 ; unknown ; N/A GL192679.1 samtools variation 24546 24546 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192679.1 samtools variation 26203 26203 . . . alleles " G C"; frequencies " 0.696078431372549 0.303921568627451"; depth 204 ; unknown ; N/A GL192679.1 samtools variation 27423 27423 . . . alleles " T C"; frequencies " 0.28 0.72"; depth 100 ; known ; synonymous GL192679.1 samtools variation 29892 29892 . . . alleles " C T"; frequencies " 0.79646017699115 0.20353982300885"; depth 113 ; unknown ; synonymous GL192679.1 samtools variation 31836 31836 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 80 ; unknown ; synonymous GL192679.1 samtools variation 614884 614884 . . . alleles " G A"; frequencies " 0.475195822454308 0.524804177545692"; depth 383 ; unknown ; non-synonymous GL192679.1 samtools variation 615444 615444 . . . alleles " T G"; frequencies " 0.625 0.375"; depth 272 ; unknown ; N/A GL192679.1 samtools variation 673974 673974 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192679.1 samtools variation 1030504 1030504 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; synonymous GL192679.1 samtools variation 1050060 1050060 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192679.1 samtools variation 1149308 1149308 . . . alleles " A G"; frequencies " 0.524590163934426 0.475409836065574"; depth 61 ; unknown ; synonymous GL192679.1 samtools variation 1149467 1149467 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 57 ; unknown ; synonymous GL192679.1 samtools variation 1149566 1149566 . . . alleles " A G"; frequencies " 0.581081081081081 0.418918918918919"; depth 74 ; unknown ; synonymous GL192679.1 samtools variation 1149620 1149620 . . . alleles " G A"; frequencies " 0.716666666666667 0.283333333333333"; depth 60 ; unknown ; synonymous GL192679.1 samtools variation 1468723 1468723 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192679.1 samtools variation 1488122 1488122 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192679.1 samtools variation 1489851 1489851 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; synonymous GL192679.1 samtools variation 1492113 1492113 . . . alleles " T C"; frequencies " 0.58041958041958 0.41958041958042"; depth 143 ; unknown ; synonymous GL192679.1 samtools variation 1502541 1502541 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; non-synonymous GL192680.1 samtools variation 58231 58231 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192680.1 samtools variation 66897 66897 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192680.1 samtools variation 76768 76768 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192680.1 samtools variation 192752 192752 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL192680.1 samtools variation 200518 200518 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192680.1 samtools variation 211994 211994 . . . alleles " A T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL192680.1 samtools variation 247989 247989 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192681.1 samtools variation 624606 624606 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL192681.1 samtools variation 629047 629047 . . . alleles " G A"; frequencies " 0.397058823529412 0.602941176470588"; depth 68 ; known ; synonymous GL192681.1 samtools variation 739749 739749 . . . alleles " T C"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL192681.1 samtools variation 747375 747375 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192681.1 samtools variation 972344 972344 . . . alleles " C T"; frequencies " 0.775 0.225"; depth 40 ; unknown ; non-synonymous GL192681.1 samtools variation 1126154 1126154 . . . alleles " G A"; frequencies " 0.729268292682927 0.270731707317073"; depth 410 ; unknown ; synonymous GL192681.1 samtools variation 1142780 1142780 . . . alleles " C T"; frequencies " 0.407017543859649 0.591228070175439"; depth 570 ; known ; synonymous GL192681.1 samtools variation 1143087 1143087 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192681.1 samtools variation 1143303 1143303 . . . alleles " G A"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL192681.1 samtools variation 1143868 1143868 . . . alleles " G A"; frequencies " 0.462962962962963 0.537037037037037"; depth 54 ; known ; N/A GL192681.1 samtools variation 1144442 1144442 . . . alleles " T C"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; known ; N/A GL192681.1 samtools variation 1145390 1145390 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; known ; N/A GL192681.1 samtools variation 1147481 1147481 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192681.1 samtools variation 1148158 1148158 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192681.1 samtools variation 1149184 1149184 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192681.1 samtools variation 1149667 1149667 . . . alleles " A G"; frequencies " 0.44 0.56"; depth 50 ; known ; N/A GL192681.1 samtools variation 1150582 1150582 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192681.1 samtools variation 1151392 1151392 . . . alleles " G T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192681.1 samtools variation 1151665 1151665 . . . alleles " C T"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL192681.1 samtools variation 1151969 1151969 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192681.1 samtools variation 1152771 1152771 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192681.1 samtools variation 1156439 1156439 . . . alleles " G A"; frequencies " 0.657068062827225 0.342931937172775"; depth 382 ; unknown ; synonymous GL192681.1 samtools variation 1156553 1156553 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL192681.1 samtools variation 1157803 1157803 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192681.1 samtools variation 1160115 1160115 . . . alleles " T C"; frequencies " 0.563131313131313 0.436868686868687"; depth 396 ; unknown ; N/A GL192681.1 samtools variation 1160485 1160485 . . . alleles " A G"; frequencies " 0.73469387755102 0.26530612244898"; depth 98 ; unknown ; N/A GL192681.1 samtools variation 1160660 1160660 . . . alleles " C T"; frequencies " 0.472222222222222 0.527777777777778"; depth 144 ; known ; N/A GL192681.1 samtools variation 1162240 1162240 . . . alleles " T G"; frequencies " 0.760975609756098 0.234146341463415"; depth 205 ; unknown ; N/A GL192681.1 samtools variation 1162935 1162935 . . . alleles " A G"; frequencies " 0.781420765027322 0.218579234972678"; depth 366 ; unknown ; N/A GL192681.1 samtools variation 1164371 1164371 . . . alleles " C T"; frequencies " 0.611428571428571 0.388571428571429"; depth 175 ; known ; N/A GL192681.1 samtools variation 1164622 1164622 . . . alleles " A C"; frequencies " 0.232758620689655 0.767241379310345"; depth 232 ; known ; N/A GL192681.1 samtools variation 1164769 1164769 . . . alleles " T C"; frequencies " 0.431952662721893 0.568047337278107"; depth 169 ; known ; N/A GL192681.1 samtools variation 1164784 1164784 . . . alleles " T C"; frequencies " 0.239263803680982 0.760736196319018"; depth 163 ; known ; N/A GL192681.1 samtools variation 1164981 1164981 . . . alleles " A G"; frequencies " 0.742465753424657 0.257534246575342"; depth 730 ; unknown ; N/A GL192681.1 samtools variation 1164983 1164983 . . . alleles " G C"; frequencies " 0.755725190839695 0.244274809160305"; depth 786 ; unknown ; N/A GL192681.1 samtools variation 1165368 1165368 . . . alleles " A G"; frequencies " 0.763888888888889 0.236111111111111"; depth 288 ; unknown ; N/A GL192681.1 samtools variation 1233637 1233637 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 16 ; known ; synonymous GL192681.1 samtools variation 1254685 1254685 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192681.1 samtools variation 1269107 1269107 . . . alleles " A G"; frequencies " 0.355932203389831 0.644067796610169"; depth 59 ; known ; synonymous GL192681.1 samtools variation 1270825 1270825 . . . alleles " C G"; frequencies " 0.622641509433962 0.377358490566038"; depth 106 ; known ; synonymous GL192681.1 samtools variation 1279051 1279051 . . . alleles " C T"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; known ; non-synonymous GL192681.1 samtools variation 1561608 1561608 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192681.1 samtools variation 1561786 1561786 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192682.1 samtools variation 10513 10513 . . . alleles " G C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL192682.1 samtools variation 10976 10976 . . . alleles " T C"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL192682.1 samtools variation 11725 11725 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192682.1 samtools variation 11726 11726 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192682.1 samtools variation 11864 11864 . . . alleles " C G"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; N/A GL192682.1 samtools variation 11966 11966 . . . alleles " G C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192682.1 samtools variation 12936 12936 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192682.1 samtools variation 17536 17536 . . . alleles " T C"; frequencies " 0.241379310344828 0.758620689655172"; depth 29 ; unknown ; N/A GL192682.1 samtools variation 225957 225957 . . . alleles " T A"; frequencies " 0.395939086294416 0.604060913705584"; depth 394 ; unknown ; N/A GL192682.1 samtools variation 226100 226100 . . . alleles " T C"; frequencies " 0.415282392026578 0.584717607973422"; depth 602 ; unknown ; N/A GL192682.1 samtools variation 255858 255858 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192682.1 samtools variation 256396 256396 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; unknown ; N/A GL192682.1 samtools variation 256459 256459 . . . alleles " T C"; frequencies " 0.660714285714286 0.339285714285714"; depth 56 ; unknown ; N/A GL192682.1 samtools variation 257325 257325 . . . alleles " C T"; frequencies " 0.233333333333333 0.766666666666667"; depth 60 ; unknown ; N/A GL192682.1 samtools variation 259527 259527 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192682.1 samtools variation 286202 286202 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192682.1 samtools variation 421026 421026 . . . alleles " G T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192682.1 samtools variation 421268 421268 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192682.1 samtools variation 423114 423114 . . . alleles " T C"; frequencies " 0.671511627906977 0.328488372093023"; depth 344 ; unknown ; synonymous GL192682.1 samtools variation 424439 424439 . . . alleles " C A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192682.1 samtools variation 425021 425021 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192682.1 samtools variation 426062 426062 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192682.1 samtools variation 426278 426278 . . . alleles " G A"; frequencies " 0.327586206896552 0.672413793103448"; depth 58 ; unknown ; N/A GL192682.1 samtools variation 426326 426326 . . . alleles " A G"; frequencies " 0.284090909090909 0.715909090909091"; depth 88 ; unknown ; N/A GL192682.1 samtools variation 426450 426450 . . . alleles " C T"; frequencies " 0.55327868852459 0.44672131147541"; depth 488 ; unknown ; synonymous GL192682.1 samtools variation 426637 426637 . . . alleles " C G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192682.1 samtools variation 426805 426805 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; unknown ; N/A GL192682.1 samtools variation 426815 426815 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 48 ; unknown ; N/A GL192682.1 samtools variation 427189 427189 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 34 ; unknown ; N/A GL192682.1 samtools variation 427238 427238 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 34 ; unknown ; N/A GL192682.1 samtools variation 427272 427272 . . . alleles " T C"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192682.1 samtools variation 427306 427306 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192682.1 samtools variation 427360 427360 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192682.1 samtools variation 427649 427649 . . . alleles " A T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192682.1 samtools variation 428115 428115 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192682.1 samtools variation 428153 428153 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192682.1 samtools variation 428379 428379 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192682.1 samtools variation 428547 428547 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192682.1 samtools variation 428582 428582 . . . alleles " G T"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL192682.1 samtools variation 429230 429230 . . . alleles " G A"; frequencies " 0.494880546075085 0.505119453924915"; depth 293 ; unknown ; synonymous GL192682.1 samtools variation 484344 484344 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 78 ; known ; N/A GL192682.1 samtools variation 485004 485004 . . . alleles " C T"; frequencies " 0.660377358490566 0.339622641509434"; depth 53 ; unknown ; N/A GL192682.1 samtools variation 506871 506871 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 42 ; unknown ; non-synonymous GL192682.1 samtools variation 678959 678959 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192682.1 samtools variation 699584 699584 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192682.1 samtools variation 716016 716016 . . . alleles " A G"; frequencies " 0.763513513513513 0.236486486486486"; depth 148 ; unknown ; synonymous GL192682.1 samtools variation 719324 719324 . . . alleles " T A"; frequencies " 0.771653543307087 0.228346456692913"; depth 127 ; unknown ; non-synonymous GL192682.1 samtools variation 719346 719346 . . . alleles " G A"; frequencies " 0.541984732824427 0.458015267175573"; depth 131 ; unknown ; synonymous GL192682.1 samtools variation 719354 719354 . . . alleles " A T"; frequencies " 0.622950819672131 0.377049180327869"; depth 122 ; unknown ; non-synonymous GL192682.1 samtools variation 719430 719430 . . . alleles " T C"; frequencies " 0.771084337349398 0.228915662650602"; depth 166 ; known ; synonymous GL192682.1 samtools variation 719436 719436 . . . alleles " G A"; frequencies " 0.772455089820359 0.227544910179641"; depth 167 ; unknown ; synonymous GL192682.1 samtools variation 720314 720314 . . . alleles " G A"; frequencies " 0.685185185185185 0.314814814814815"; depth 216 ; unknown ; non-synonymous GL192682.1 samtools variation 758331 758331 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192682.1 samtools variation 773603 773603 . . . alleles " G A"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; non-synonymous GL192682.1 samtools variation 821200 821200 . . . alleles " A G"; frequencies " 0.792993630573248 0.207006369426752"; depth 314 ; unknown ; N/A GL192682.1 samtools variation 822724 822724 . . . alleles " T C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192682.1 samtools variation 828044 828044 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 34 ; unknown ; N/A GL192682.1 samtools variation 829400 829400 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192682.1 samtools variation 829893 829893 . . . alleles " C G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192682.1 samtools variation 830625 830625 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192682.1 samtools variation 832669 832669 . . . alleles " T C"; frequencies " 0.376218323586745 0.623294346978557"; depth 2052 ; unknown ; N/A GL192682.1 samtools variation 833265 833265 . . . alleles " C G"; frequencies " 0.553191489361702 0.446808510638298"; depth 94 ; known ; N/A GL192682.1 samtools variation 833290 833290 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; N/A GL192682.1 samtools variation 833901 833901 . . . alleles " A T"; frequencies " 0.556569343065693 0.443430656934307"; depth 548 ; known ; N/A GL192682.1 samtools variation 834280 834280 . . . alleles " G A"; frequencies " 0.784090909090909 0.215909090909091"; depth 352 ; known ; N/A GL192682.1 samtools variation 837008 837008 . . . alleles " T C"; frequencies " 0.455399061032864 0.544600938967136"; depth 213 ; unknown ; N/A GL192682.1 samtools variation 837009 837009 . . . alleles " C T"; frequencies " 0.467592592592593 0.532407407407407"; depth 216 ; unknown ; N/A GL192682.1 samtools variation 837640 837640 . . . alleles " G A"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; N/A GL192682.1 samtools variation 839218 839218 . . . alleles " A G"; frequencies " 0.295454545454545 0.704545454545455"; depth 44 ; unknown ; N/A GL192682.1 samtools variation 839233 839233 . . . alleles " G T"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL192682.1 samtools variation 839413 839413 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 90 ; unknown ; N/A GL192682.1 samtools variation 839923 839923 . . . alleles " A C"; frequencies " 0.687830687830688 0.312169312169312"; depth 189 ; unknown ; N/A GL192682.1 samtools variation 839967 839967 . . . alleles " C G"; frequencies " 0.72258064516129 0.27741935483871"; depth 155 ; unknown ; N/A GL192682.1 samtools variation 840662 840662 . . . alleles " A C"; frequencies " 0.393617021276596 0.606382978723404"; depth 94 ; unknown ; N/A GL192682.1 samtools variation 841458 841458 . . . alleles " C T"; frequencies " 0.781818181818182 0.218181818181818"; depth 110 ; unknown ; N/A GL192682.1 samtools variation 841673 841673 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192682.1 samtools variation 841797 841797 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 65 ; unknown ; N/A GL192682.1 samtools variation 841898 841898 . . . alleles " A C"; frequencies " 0.467532467532468 0.532467532467532"; depth 77 ; unknown ; N/A GL192682.1 samtools variation 842015 842015 . . . alleles " C G"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; unknown ; N/A GL192682.1 samtools variation 842070 842070 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; unknown ; N/A GL192682.1 samtools variation 842266 842266 . . . alleles " A G"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192682.1 samtools variation 842289 842289 . . . alleles " G A"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL192682.1 samtools variation 842619 842619 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192682.1 samtools variation 843256 843256 . . . alleles " C T"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL192682.1 samtools variation 845391 845391 . . . alleles " T C"; frequencies " 0.509803921568627 0.490196078431373"; depth 51 ; known ; N/A GL192682.1 samtools variation 847271 847271 . . . alleles " A T"; frequencies " 0.743243243243243 0.256756756756757"; depth 74 ; unknown ; N/A GL192682.1 samtools variation 848045 848045 . . . alleles " A C"; frequencies " 0.506493506493506 0.493506493506494"; depth 154 ; unknown ; N/A GL192682.1 samtools variation 902954 902954 . . . alleles " A C"; frequencies " 0.582926829268293 0.417073170731707"; depth 410 ; known ; N/A GL192682.1 samtools variation 905531 905531 . . . alleles " T C"; frequencies " 0.237762237762238 0.762237762237762"; depth 143 ; known ; synonymous GL192682.1 samtools variation 909939 909939 . . . alleles " A T"; frequencies " 0.359116022099448 0.635359116022099"; depth 181 ; known ; synonymous GL192682.1 samtools variation 990273 990273 . . . alleles " G A"; frequencies " 0.369458128078818 0.630541871921182"; depth 203 ; unknown ; synonymous GL192682.1 samtools variation 990904 990904 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 57 ; unknown ; N/A GL192682.1 samtools variation 993130 993130 . . . alleles " A T"; frequencies " 0.421875 0.578125"; depth 64 ; unknown ; N/A GL192682.1 samtools variation 993131 993131 . . . alleles " C A"; frequencies " 0.430769230769231 0.569230769230769"; depth 65 ; unknown ; N/A GL192682.1 samtools variation 993239 993239 . . . alleles " G A"; frequencies " 0.61864406779661 0.38135593220339"; depth 118 ; unknown ; N/A GL192682.1 samtools variation 993254 993254 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 114 ; unknown ; N/A GL192682.1 samtools variation 994974 994974 . . . alleles " C T"; frequencies " 0.325581395348837 0.674418604651163"; depth 43 ; unknown ; N/A GL192682.1 samtools variation 1002142 1002142 . . . alleles " T G"; frequencies " 0.472972972972973 0.527027027027027"; depth 74 ; unknown ; N/A GL192682.1 samtools variation 1006611 1006611 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192682.1 samtools variation 1008166 1008166 . . . alleles " T C"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL192682.1 samtools variation 1008697 1008697 . . . alleles " C T"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; N/A GL192682.1 samtools variation 1010983 1010983 . . . alleles " C T"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; unknown ; N/A GL192682.1 samtools variation 1015885 1015885 . . . alleles " A C"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL192682.1 samtools variation 1156936 1156936 . . . alleles " C G"; frequencies " 0.688524590163934 0.295081967213115"; depth 61 ; unknown ; N/A GL192682.1 samtools variation 1209256 1209256 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192682.1 samtools variation 1547563 1547563 . . . alleles " T C"; frequencies " 0.65625 0.34375"; depth 160 ; unknown ; N/A GL192682.1 samtools variation 1547786 1547786 . . . alleles " G A"; frequencies " 0.666666666666667 0.324324324324324"; depth 111 ; unknown ; N/A GL192682.1 samtools variation 1562320 1562320 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 84 ; unknown ; synonymous GL192683.1 samtools variation 1736 1736 . . . alleles " A T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; synonymous GL192683.1 samtools variation 4687 4687 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; synonymous GL192683.1 samtools variation 4918 4918 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; synonymous GL192683.1 samtools variation 13968 13968 . . . alleles " G T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; non-synonymous GL192683.1 samtools variation 347169 347169 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192683.1 samtools variation 769359 769359 . . . alleles " G T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; known ; N/A GL192683.1 samtools variation 770189 770189 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; known ; N/A GL192683.1 samtools variation 848711 848711 . . . alleles " C T"; frequencies " 0.637362637362637 0.362637362637363"; depth 91 ; unknown ; non-synonymous GL192683.1 samtools variation 879331 879331 . . . alleles " T C"; frequencies " 0.475409836065574 0.524590163934426"; depth 61 ; known ; synonymous GL192683.1 samtools variation 963209 963209 . . . alleles " C T"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; known ; synonymous GL192683.1 samtools variation 1054563 1054563 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192683.1 samtools variation 1061395 1061395 . . . alleles " A T"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL192684.1 samtools variation 186090 186090 . . . alleles " A G"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192684.1 samtools variation 692825 692825 . . . alleles " A G"; frequencies " 0.673469387755102 0.326530612244898"; depth 49 ; unknown ; N/A GL192684.1 samtools variation 694481 694481 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192684.1 samtools variation 694595 694595 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192685.1 samtools variation 20371 20371 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192685.1 samtools variation 21816 21816 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192685.1 samtools variation 21866 21866 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL192685.1 samtools variation 22449 22449 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 30 ; unknown ; N/A GL192685.1 samtools variation 22521 22521 . . . alleles " T C"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; N/A GL192685.1 samtools variation 22526 22526 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; N/A GL192685.1 samtools variation 28742 28742 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 69 ; unknown ; N/A GL192685.1 samtools variation 28971 28971 . . . alleles " C T"; frequencies " 0.372549019607843 0.627450980392157"; depth 51 ; unknown ; N/A GL192685.1 samtools variation 29531 29531 . . . alleles " A G"; frequencies " 0.75187969924812 0.24812030075188"; depth 133 ; unknown ; N/A GL192685.1 samtools variation 43266 43266 . . . alleles " T A"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL192685.1 samtools variation 44262 44262 . . . alleles " G A"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; N/A GL192685.1 samtools variation 44420 44420 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192685.1 samtools variation 44948 44948 . . . alleles " T C"; frequencies " 0.289256198347107 0.710743801652893"; depth 121 ; unknown ; N/A GL192685.1 samtools variation 45805 45805 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192685.1 samtools variation 45892 45892 . . . alleles " A T"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL192685.1 samtools variation 45914 45914 . . . alleles " A G"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192685.1 samtools variation 46130 46130 . . . alleles " G A"; frequencies " 0.512820512820513 0.487179487179487"; depth 39 ; unknown ; N/A GL192685.1 samtools variation 46146 46146 . . . alleles " C G"; frequencies " 0.5625 0.4375"; depth 48 ; unknown ; N/A GL192685.1 samtools variation 46497 46497 . . . alleles " A T"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL192685.1 samtools variation 47098 47098 . . . alleles " A G"; frequencies " 0.475409836065574 0.524590163934426"; depth 61 ; unknown ; N/A GL192685.1 samtools variation 47174 47174 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; known ; N/A GL192685.1 samtools variation 47254 47254 . . . alleles " C A"; frequencies " 0.4375 0.5625"; depth 32 ; unknown ; N/A GL192685.1 samtools variation 47774 47774 . . . alleles " G C"; frequencies " 0.285714285714286 0.714285714285714"; depth 98 ; unknown ; N/A GL192685.1 samtools variation 47864 47864 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 80 ; unknown ; N/A GL192685.1 samtools variation 47942 47942 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 45 ; unknown ; N/A GL192685.1 samtools variation 48351 48351 . . . alleles " A G"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL192685.1 samtools variation 48757 48757 . . . alleles " T C"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL192685.1 samtools variation 49036 49036 . . . alleles " G C"; frequencies " 0.775 0.225"; depth 40 ; unknown ; N/A GL192685.1 samtools variation 50332 50332 . . . alleles " C T"; frequencies " 0.463768115942029 0.536231884057971"; depth 69 ; unknown ; N/A GL192685.1 samtools variation 50398 50398 . . . alleles " T G"; frequencies " 0.769230769230769 0.230769230769231"; depth 52 ; known ; N/A GL192685.1 samtools variation 51427 51427 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; known ; N/A GL192685.1 samtools variation 52278 52278 . . . alleles " T C"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; unknown ; N/A GL192685.1 samtools variation 52584 52584 . . . alleles " C G"; frequencies " 0.640625 0.359375"; depth 64 ; known ; non-synonymous GL192685.1 samtools variation 52992 52992 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192685.1 samtools variation 53001 53001 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192685.1 samtools variation 54017 54017 . . . alleles " T G"; frequencies " 0.306451612903226 0.693548387096774"; depth 62 ; known ; N/A GL192685.1 samtools variation 64963 64963 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192685.1 samtools variation 65845 65845 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192685.1 samtools variation 65969 65969 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192685.1 samtools variation 71024 71024 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 63 ; known ; synonymous GL192685.1 samtools variation 73274 73274 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192685.1 samtools variation 74655 74655 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192685.1 samtools variation 84613 84613 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192685.1 samtools variation 85919 85919 . . . alleles " G A"; frequencies " 0.568181818181818 0.431818181818182"; depth 88 ; unknown ; N/A GL192685.1 samtools variation 86270 86270 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192685.1 samtools variation 89689 89689 . . . alleles " G T"; frequencies " 0.348837209302326 0.651162790697674"; depth 43 ; known ; N/A GL192685.1 samtools variation 93760 93760 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192685.1 samtools variation 353114 353114 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192685.1 samtools variation 355379 355379 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192685.1 samtools variation 358376 358376 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL192685.1 samtools variation 358489 358489 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192685.1 samtools variation 359662 359662 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192685.1 samtools variation 360399 360399 . . . alleles " T C"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192685.1 samtools variation 362058 362058 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192685.1 samtools variation 799366 799366 . . . alleles " A G"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; known ; N/A GL192685.1 samtools variation 804441 804441 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192685.1 samtools variation 804559 804559 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192685.1 samtools variation 821942 821942 . . . alleles " T C"; frequencies " 0.316923076923077 0.68"; depth 325 ; known ; non-synonymous GL192685.1 samtools variation 822015 822015 . . . alleles " T C"; frequencies " 0.526119402985075 0.473880597014925"; depth 268 ; known ; synonymous GL192685.1 samtools variation 823734 823734 . . . alleles " A C"; frequencies " 0.773584905660377 0.226415094339623"; depth 53 ; unknown ; non-synonymous GL192685.1 samtools variation 826421 826421 . . . alleles " G A"; frequencies " 0.660377358490566 0.339622641509434"; depth 53 ; unknown ; non-synonymous GL192685.1 samtools variation 828263 828263 . . . alleles " A G"; frequencies " 0.734463276836158 0.265536723163842"; depth 177 ; unknown ; non-synonymous GL192685.1 samtools variation 828292 828292 . . . alleles " C T"; frequencies " 0.752808988764045 0.247191011235955"; depth 178 ; unknown ; synonymous GL192685.1 samtools variation 853139 853139 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192685.1 samtools variation 853355 853355 . . . alleles " T G"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192685.1 samtools variation 853825 853825 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; known ; N/A GL192685.1 samtools variation 853835 853835 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192685.1 samtools variation 854439 854439 . . . alleles " G A"; frequencies " 0.679245283018868 0.320754716981132"; depth 53 ; unknown ; N/A GL192685.1 samtools variation 854640 854640 . . . alleles " G A"; frequencies " 0.426229508196721 0.573770491803279"; depth 61 ; unknown ; N/A GL192685.1 samtools variation 854643 854643 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 60 ; unknown ; N/A GL192685.1 samtools variation 863039 863039 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192685.1 samtools variation 865661 865661 . . . alleles " C T"; frequencies " 0.676470588235294 0.323529411764706"; depth 68 ; known ; N/A GL192685.1 samtools variation 867423 867423 . . . alleles " A G"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL192685.1 samtools variation 867691 867691 . . . alleles " A G"; frequencies " 0.575342465753425 0.424657534246575"; depth 73 ; unknown ; N/A GL192685.1 samtools variation 870229 870229 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192685.1 samtools variation 870247 870247 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192685.1 samtools variation 870629 870629 . . . alleles " C T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192685.1 samtools variation 871131 871131 . . . alleles " A T"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192685.1 samtools variation 871304 871304 . . . alleles " G A"; frequencies " 0.653846153846154 0.346153846153846"; depth 52 ; unknown ; N/A GL192685.1 samtools variation 871396 871396 . . . alleles " T C"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; unknown ; N/A GL192685.1 samtools variation 871665 871665 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192685.1 samtools variation 871743 871743 . . . alleles " A G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192685.1 samtools variation 874728 874728 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192685.1 samtools variation 875810 875810 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192685.1 samtools variation 876185 876185 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; non-synonymous GL192685.1 samtools variation 876314 876314 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192685.1 samtools variation 876872 876872 . . . alleles " C T"; frequencies " 0.590909090909091 0.409090909090909"; depth 66 ; unknown ; N/A GL192685.1 samtools variation 877462 877462 . . . alleles " A G"; frequencies " 0.719280719280719 0.280719280719281"; depth 1001 ; unknown ; N/A GL192685.1 samtools variation 877717 877717 . . . alleles " A G"; frequencies " 0.712609970674487 0.287390029325513"; depth 341 ; unknown ; N/A GL192685.1 samtools variation 878772 878772 . . . alleles " C T"; frequencies " 0.750503018108652 0.249496981891348"; depth 497 ; unknown ; synonymous GL192685.1 samtools variation 878848 878848 . . . alleles " A G"; frequencies " 0.444852941176471 0.555147058823529"; depth 272 ; known ; non-synonymous GL192685.1 samtools variation 878928 878928 . . . alleles " G C"; frequencies " 0.782511210762332 0.217488789237668"; depth 446 ; unknown ; synonymous GL192685.1 samtools variation 879144 879144 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 604 ; known ; synonymous GL192685.1 samtools variation 880381 880381 . . . alleles " G A"; frequencies " 0.452954048140044 0.547045951859956"; depth 457 ; known ; synonymous GL192685.1 samtools variation 881620 881620 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192685.1 samtools variation 881650 881650 . . . alleles " T A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192685.1 samtools variation 881900 881900 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192685.1 samtools variation 883733 883733 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL192685.1 samtools variation 884122 884122 . . . alleles " C G"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL192685.1 samtools variation 884839 884839 . . . alleles " A G"; frequencies " 0.763919821826281 0.236080178173719"; depth 449 ; unknown ; synonymous GL192685.1 samtools variation 884890 884890 . . . alleles " G A"; frequencies " 0.773359840954274 0.226640159045726"; depth 503 ; unknown ; synonymous GL192685.1 samtools variation 887902 887902 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192685.1 samtools variation 888405 888405 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192685.1 samtools variation 889536 889536 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192685.1 samtools variation 890349 890349 . . . alleles " T C"; frequencies " 0.558823529411765 0.441176470588235"; depth 170 ; known ; N/A GL192685.1 samtools variation 891791 891791 . . . alleles " A G"; frequencies " 0.382978723404255 0.617021276595745"; depth 47 ; known ; N/A GL192685.1 samtools variation 897192 897192 . . . alleles " A G"; frequencies " 0.714912280701754 0.285087719298246"; depth 228 ; known ; synonymous GL192685.1 samtools variation 907249 907249 . . . alleles " C T"; frequencies " 0.437919463087248 0.562080536912752"; depth 596 ; known ; N/A GL192685.1 samtools variation 949151 949151 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192685.1 samtools variation 949541 949541 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192686.1 samtools variation 326957 326957 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192686.1 samtools variation 348485 348485 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192686.1 samtools variation 348546 348546 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192686.1 samtools variation 349280 349280 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192686.1 samtools variation 349468 349468 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192686.1 samtools variation 351685 351685 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192686.1 samtools variation 353300 353300 . . . alleles " A G"; frequencies " 0.698924731182796 0.301075268817204"; depth 93 ; unknown ; N/A GL192686.1 samtools variation 353765 353765 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192686.1 samtools variation 355074 355074 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192686.1 samtools variation 358960 358960 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192686.1 samtools variation 370808 370808 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192686.1 samtools variation 379582 379582 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192686.1 samtools variation 380173 380173 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 32 ; known ; N/A GL192686.1 samtools variation 380229 380229 . . . alleles " C T"; frequencies " 0.318181818181818 0.681818181818182"; depth 44 ; known ; N/A GL192686.1 samtools variation 382187 382187 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192686.1 samtools variation 384194 384194 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192686.1 samtools variation 413938 413938 . . . alleles " A G"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL192686.1 samtools variation 415436 415436 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192686.1 samtools variation 416257 416257 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192686.1 samtools variation 417624 417624 . . . alleles " T C"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL192686.1 samtools variation 417793 417793 . . . alleles " T C"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL192686.1 samtools variation 430684 430684 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192686.1 samtools variation 437660 437660 . . . alleles " G A"; frequencies " 0.48 0.52"; depth 25 ; known ; N/A GL192686.1 samtools variation 437803 437803 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192686.1 samtools variation 438953 438953 . . . alleles " C T"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192686.1 samtools variation 438955 438955 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL192686.1 samtools variation 439019 439019 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; N/A GL192686.1 samtools variation 439369 439369 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192686.1 samtools variation 439465 439465 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; known ; N/A GL192686.1 samtools variation 439510 439510 . . . alleles " T C"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; known ; N/A GL192686.1 samtools variation 439534 439534 . . . alleles " C T"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; known ; N/A GL192686.1 samtools variation 439601 439601 . . . alleles " A G"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; known ; N/A GL192686.1 samtools variation 439979 439979 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192686.1 samtools variation 440422 440422 . . . alleles " G A"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; N/A GL192686.1 samtools variation 443553 443553 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192686.1 samtools variation 491313 491313 . . . alleles " C T"; frequencies " 0.59375 0.40625"; depth 32 ; known ; N/A GL192686.1 samtools variation 494832 494832 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192686.1 samtools variation 494952 494952 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192686.1 samtools variation 505386 505386 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192686.1 samtools variation 506580 506580 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192686.1 samtools variation 506627 506627 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192686.1 samtools variation 506646 506646 . . . alleles " C A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192686.1 samtools variation 507089 507089 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192686.1 samtools variation 512057 512057 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 58 ; known ; N/A GL192686.1 samtools variation 514488 514488 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192686.1 samtools variation 699804 699804 . . . alleles " C T"; frequencies " 0.402777777777778 0.597222222222222"; depth 72 ; known ; synonymous GL192686.1 samtools variation 726293 726293 . . . alleles " T C"; frequencies " 0.420382165605096 0.579617834394904"; depth 157 ; known ; N/A GL192686.1 samtools variation 726332 726332 . . . alleles " C T"; frequencies " 0.730496453900709 0.269503546099291"; depth 141 ; unknown ; N/A GL192686.1 samtools variation 726533 726533 . . . alleles " T C"; frequencies " 0.758064516129032 0.241935483870968"; depth 62 ; unknown ; N/A GL192686.1 samtools variation 726653 726653 . . . alleles " G A"; frequencies " 0.616666666666667 0.383333333333333"; depth 120 ; known ; N/A GL192686.1 samtools variation 756215 756215 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192686.1 samtools variation 993763 993763 . . . alleles " A C"; frequencies " 0.2 0.8"; depth 25 ; known ; N/A GL192686.1 samtools variation 1022108 1022108 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 65 ; unknown ; N/A GL192686.1 samtools variation 1450493 1450493 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192687.1 samtools variation 63399 63399 . . . alleles " T G"; frequencies " 0.666666666666667 0.30952380952381"; depth 42 ; unknown ; non-synonymous GL192687.1 samtools variation 70092 70092 . . . alleles " C T"; frequencies " 0.623376623376623 0.376623376623377"; depth 154 ; unknown ; N/A GL192687.1 samtools variation 70997 70997 . . . alleles " C A"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; known ; N/A GL192687.1 samtools variation 115556 115556 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; synonymous GL192687.1 samtools variation 123017 123017 . . . alleles " T A"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL192687.1 samtools variation 132286 132286 . . . alleles " G T"; frequencies " 0.64 0.36"; depth 25 ; unknown ; synonymous GL192687.1 samtools variation 162768 162768 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 98 ; known ; N/A GL192687.1 samtools variation 163020 163020 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192687.1 samtools variation 164469 164469 . . . alleles " G C"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; known ; N/A GL192687.1 samtools variation 164676 164676 . . . alleles " A G"; frequencies " 0.24390243902439 0.75609756097561"; depth 41 ; known ; N/A GL192687.1 samtools variation 164686 164686 . . . alleles " C T"; frequencies " 0.277777777777778 0.722222222222222"; depth 36 ; known ; N/A GL192687.1 samtools variation 164744 164744 . . . alleles " A T"; frequencies " 0.611111111111111 0.388888888888889"; depth 54 ; known ; N/A GL192687.1 samtools variation 164990 164990 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; known ; N/A GL192687.1 samtools variation 165267 165267 . . . alleles " T G"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192687.1 samtools variation 165268 165268 . . . alleles " T A"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192687.1 samtools variation 165962 165962 . . . alleles " G T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192687.1 samtools variation 167797 167797 . . . alleles " A T"; frequencies " 0.760416666666667 0.239583333333333"; depth 96 ; unknown ; N/A GL192687.1 samtools variation 168799 168799 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 35 ; known ; N/A GL192687.1 samtools variation 267877 267877 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192687.1 samtools variation 268033 268033 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192687.1 samtools variation 275063 275063 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 40 ; unknown ; synonymous GL192687.1 samtools variation 275083 275083 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; unknown ; non-synonymous GL192687.1 samtools variation 277318 277318 . . . alleles " G T"; frequencies " 0.48 0.52"; depth 25 ; known ; N/A GL192687.1 samtools variation 277322 277322 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192687.1 samtools variation 289861 289861 . . . alleles " G A"; frequencies " 0.704761904761905 0.295238095238095"; depth 105 ; unknown ; synonymous GL192687.1 samtools variation 1426441 1426441 . . . alleles " C T"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; synonymous GL192687.1 samtools variation 1442054 1442054 . . . alleles " G C"; frequencies " 0.25 0.708333333333333"; depth 24 ; known ; synonymous GL192687.1 samtools variation 1442252 1442252 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 25 ; known ; synonymous GL192687.1 samtools variation 1442472 1442472 . . . alleles " G C"; frequencies " 0.270833333333333 0.729166666666667"; depth 48 ; known ; non-synonymous GL192687.1 samtools variation 1444251 1444251 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL192687.1 samtools variation 1446361 1446361 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192687.1 samtools variation 1446673 1446673 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192687.1 samtools variation 1515726 1515726 . . . alleles " A C"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; known ; N/A GL192687.1 samtools variation 1566464 1566464 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192688.1 samtools variation 693208 693208 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192688.1 samtools variation 702802 702802 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192688.1 samtools variation 703533 703533 . . . alleles " A G"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; unknown ; N/A GL192688.1 samtools variation 703801 703801 . . . alleles " G C"; frequencies " 0.465116279069767 0.534883720930233"; depth 43 ; unknown ; N/A GL192688.1 samtools variation 703997 703997 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192688.1 samtools variation 704238 704238 . . . alleles " G T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192688.1 samtools variation 704710 704710 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 26 ; unknown ; N/A GL192688.1 samtools variation 705965 705965 . . . alleles " T C"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL192688.1 samtools variation 706055 706055 . . . alleles " G T"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; N/A GL192688.1 samtools variation 706058 706058 . . . alleles " G T"; frequencies " 0.470588235294118 0.529411764705882"; depth 34 ; unknown ; N/A GL192688.1 samtools variation 706768 706768 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192688.1 samtools variation 706906 706906 . . . alleles " G C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192688.1 samtools variation 707172 707172 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192688.1 samtools variation 707697 707697 . . . alleles " A C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192688.1 samtools variation 707920 707920 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192688.1 samtools variation 711389 711389 . . . alleles " G A"; frequencies " 0.51010101010101 0.48989898989899"; depth 198 ; unknown ; N/A GL192688.1 samtools variation 711767 711767 . . . alleles " T C"; frequencies " 0.56203007518797 0.43796992481203"; depth 532 ; unknown ; N/A GL192688.1 samtools variation 713127 713127 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 156 ; unknown ; N/A GL192688.1 samtools variation 713324 713324 . . . alleles " G A"; frequencies " 0.313725490196078 0.686274509803922"; depth 51 ; unknown ; N/A GL192688.1 samtools variation 714164 714164 . . . alleles " A G"; frequencies " 0.330960854092527 0.669039145907473"; depth 562 ; unknown ; N/A GL192688.1 samtools variation 715270 715270 . . . alleles " T C"; frequencies " 0.583617747440273 0.416382252559727"; depth 293 ; unknown ; N/A GL192688.1 samtools variation 716038 716038 . . . alleles " G A"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; unknown ; N/A GL192688.1 samtools variation 716842 716842 . . . alleles " T G"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192688.1 samtools variation 718245 718245 . . . alleles " G C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192688.1 samtools variation 719365 719365 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192688.1 samtools variation 726489 726489 . . . alleles " C T"; frequencies " 0.52112676056338 0.47887323943662"; depth 71 ; unknown ; N/A GL192688.1 samtools variation 726625 726625 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL192688.1 samtools variation 726637 726637 . . . alleles " A G"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL192688.1 samtools variation 726733 726733 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192688.1 samtools variation 727269 727269 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192688.1 samtools variation 727312 727312 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192688.1 samtools variation 727353 727353 . . . alleles " G T"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192688.1 samtools variation 731068 731068 . . . alleles " C T"; frequencies " 0.557736720554272 0.441108545034642"; depth 866 ; unknown ; non-synonymous GL192688.1 samtools variation 741788 741788 . . . alleles " C T"; frequencies " 0.482758620689655 0.517241379310345"; depth 58 ; unknown ; N/A GL192688.1 samtools variation 742382 742382 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192688.1 samtools variation 747058 747058 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192688.1 samtools variation 747110 747110 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192688.1 samtools variation 748544 748544 . . . alleles " G A"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL192688.1 samtools variation 752334 752334 . . . alleles " G C"; frequencies " 0.673469387755102 0.326530612244898"; depth 49 ; unknown ; N/A GL192688.1 samtools variation 762210 762210 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 30 ; unknown ; N/A GL192688.1 samtools variation 794906 794906 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192688.1 samtools variation 897101 897101 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192688.1 samtools variation 910114 910114 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192688.1 samtools variation 911456 911456 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192688.1 samtools variation 912487 912487 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL192688.1 samtools variation 915887 915887 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192688.1 samtools variation 919851 919851 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; unknown ; N/A GL192688.1 samtools variation 920021 920021 . . . alleles " G C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192688.1 samtools variation 922975 922975 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192688.1 samtools variation 925943 925943 . . . alleles " A G"; frequencies " 0.277777777777778 0.722222222222222"; depth 36 ; known ; N/A GL192688.1 samtools variation 939257 939257 . . . alleles " G T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192688.1 samtools variation 939413 939413 . . . alleles " C T"; frequencies " 0.39344262295082 0.60655737704918"; depth 61 ; known ; N/A GL192688.1 samtools variation 939442 939442 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; known ; N/A GL192688.1 samtools variation 939510 939510 . . . alleles " G A"; frequencies " 0.326086956521739 0.673913043478261"; depth 46 ; known ; N/A GL192688.1 samtools variation 939658 939658 . . . alleles " T G"; frequencies " 0.771929824561403 0.228070175438596"; depth 57 ; unknown ; N/A GL192688.1 samtools variation 941196 941196 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192688.1 samtools variation 950832 950832 . . . alleles " T C"; frequencies " 0.721311475409836 0.278688524590164"; depth 61 ; known ; N/A GL192688.1 samtools variation 966782 966782 . . . alleles " A G"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; unknown ; N/A GL192688.1 samtools variation 969827 969827 . . . alleles " C G"; frequencies " 0.52 0.48"; depth 50 ; unknown ; N/A GL192688.1 samtools variation 970934 970934 . . . alleles " C A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192688.1 samtools variation 989267 989267 . . . alleles " G A"; frequencies " 0.325153374233129 0.674846625766871"; depth 163 ; known ; synonymous GL192688.1 samtools variation 989728 989728 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192688.1 samtools variation 989929 989929 . . . alleles " G T"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL192688.1 samtools variation 994099 994099 . . . alleles " G A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192688.1 samtools variation 994147 994147 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192688.1 samtools variation 1014033 1014033 . . . alleles " G A"; frequencies " 0.232558139534884 0.767441860465116"; depth 215 ; known ; synonymous GL192688.1 samtools variation 1016184 1016184 . . . alleles " G A"; frequencies " 0.790322580645161 0.209677419354839"; depth 124 ; unknown ; synonymous GL192688.1 samtools variation 1019699 1019699 . . . alleles " C T"; frequencies " 0.391304347826087 0.565217391304348"; depth 23 ; unknown ; N/A GL192688.1 samtools variation 1036925 1036925 . . . alleles " T C"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192688.1 samtools variation 1036971 1036971 . . . alleles " G A"; frequencies " 0.283018867924528 0.716981132075472"; depth 53 ; known ; N/A GL192688.1 samtools variation 1037120 1037120 . . . alleles " G A"; frequencies " 0.779661016949153 0.220338983050847"; depth 59 ; unknown ; N/A GL192688.1 samtools variation 1038123 1038123 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 91 ; unknown ; N/A GL192688.1 samtools variation 1043431 1043431 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192688.1 samtools variation 1045900 1045900 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192688.1 samtools variation 1045930 1045930 . . . alleles " G C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192688.1 samtools variation 1048015 1048015 . . . alleles " G A"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL192688.1 samtools variation 1048660 1048660 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; known ; N/A GL192688.1 samtools variation 1048676 1048676 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; known ; N/A GL192688.1 samtools variation 1050328 1050328 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL192688.1 samtools variation 1050690 1050690 . . . alleles " A G"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; unknown ; N/A GL192688.1 samtools variation 1052694 1052694 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192688.1 samtools variation 1059131 1059131 . . . alleles " C G"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; unknown ; N/A GL192688.1 samtools variation 1059606 1059606 . . . alleles " G C"; frequencies " 0.661538461538462 0.338461538461538"; depth 65 ; unknown ; N/A GL192688.1 samtools variation 1059820 1059820 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192688.1 samtools variation 1061159 1061159 . . . alleles " G A"; frequencies " 0.770491803278688 0.229508196721311"; depth 61 ; unknown ; N/A GL192688.1 samtools variation 1061226 1061226 . . . alleles " A C"; frequencies " 0.70625 0.29375"; depth 160 ; unknown ; N/A GL192688.1 samtools variation 1061391 1061391 . . . alleles " T C"; frequencies " 0.274193548387097 0.725806451612903"; depth 62 ; unknown ; N/A GL192689.1 samtools variation 1277720 1277720 . . . alleles " G A"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; known ; N/A GL192689.1 samtools variation 1283128 1283128 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192690.1 samtools variation 13338 13338 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192690.1 samtools variation 67470 67470 . . . alleles " G T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192690.1 samtools variation 131200 131200 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 25 ; known ; synonymous GL192690.1 samtools variation 247169 247169 . . . alleles " C A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192690.1 samtools variation 252273 252273 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 189 ; unknown ; N/A GL192690.1 samtools variation 274147 274147 . . . alleles " T C"; frequencies " 0.382978723404255 0.617021276595745"; depth 47 ; known ; N/A GL192690.1 samtools variation 274252 274252 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; known ; N/A GL192690.1 samtools variation 279928 279928 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192690.1 samtools variation 306560 306560 . . . alleles " G A"; frequencies " 0.588832487309645 0.411167512690355"; depth 197 ; known ; synonymous GL192690.1 samtools variation 333048 333048 . . . alleles " G A"; frequencies " 0.59504132231405 0.40495867768595"; depth 121 ; known ; synonymous GL192690.1 samtools variation 361120 361120 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL192690.1 samtools variation 404376 404376 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192690.1 samtools variation 404418 404418 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192690.1 samtools variation 408187 408187 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192690.1 samtools variation 705277 705277 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 56 ; unknown ; N/A GL192690.1 samtools variation 708273 708273 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL192690.1 samtools variation 910028 910028 . . . alleles " A T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL192690.1 samtools variation 912041 912041 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL192690.1 samtools variation 917039 917039 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192690.1 samtools variation 941390 941390 . . . alleles " T C"; frequencies " 0.301587301587302 0.698412698412698"; depth 63 ; known ; non-synonymous GL192690.1 samtools variation 979021 979021 . . . alleles " T C"; frequencies " 0.607142857142857 0.392857142857143"; depth 56 ; unknown ; synonymous GL192690.1 samtools variation 989485 989485 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192690.1 samtools variation 996261 996261 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192690.1 samtools variation 996262 996262 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192690.1 samtools variation 996437 996437 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192690.1 samtools variation 997497 997497 . . . alleles " C G"; frequencies " 0.454545454545455 0.545454545454545"; depth 44 ; known ; N/A GL192690.1 samtools variation 1465671 1465671 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192690.1 samtools variation 1467141 1467141 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192690.1 samtools variation 1467906 1467906 . . . alleles " G A"; frequencies " 0.48780487804878 0.51219512195122"; depth 41 ; unknown ; N/A GL192691.1 samtools variation 818994 818994 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192691.1 samtools variation 845282 845282 . . . alleles " A G"; frequencies " 0.778846153846154 0.221153846153846"; depth 104 ; unknown ; non-synonymous GL192691.1 samtools variation 1154047 1154047 . . . alleles " A G"; frequencies " 0.246153846153846 0.753846153846154"; depth 65 ; unknown ; N/A GL192691.1 samtools variation 1154082 1154082 . . . alleles " C G"; frequencies " 0.482142857142857 0.517857142857143"; depth 56 ; unknown ; N/A GL192691.1 samtools variation 1154118 1154118 . . . alleles " C G"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; unknown ; N/A GL192691.1 samtools variation 1154354 1154354 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 144 ; unknown ; N/A GL192691.1 samtools variation 1154462 1154462 . . . alleles " C T"; frequencies " 0.735632183908046 0.264367816091954"; depth 87 ; unknown ; N/A GL192691.1 samtools variation 1163836 1163836 . . . alleles " C T"; frequencies " 0.573825503355705 0.426174496644295"; depth 298 ; unknown ; N/A GL192691.1 samtools variation 1184242 1184242 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192691.1 samtools variation 1184243 1184243 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192691.1 samtools variation 1212091 1212091 . . . alleles " C T"; frequencies " 0.769547325102881 0.230452674897119"; depth 729 ; unknown ; N/A GL192691.1 samtools variation 1296669 1296669 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192691.1 samtools variation 1298186 1298186 . . . alleles " G A"; frequencies " 0.223404255319149 0.776595744680851"; depth 94 ; unknown ; N/A GL192692.1 samtools variation 294312 294312 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192692.1 samtools variation 297377 297377 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192692.1 samtools variation 305530 305530 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192692.1 samtools variation 522827 522827 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192692.1 samtools variation 522832 522832 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192692.1 samtools variation 1309433 1309433 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192692.1 samtools variation 1317200 1317200 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192692.1 samtools variation 1402622 1402622 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192692.1 samtools variation 1468243 1468243 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 306 ; known ; synonymous GL192692.1 samtools variation 1469825 1469825 . . . alleles " A G"; frequencies " 0.56687898089172 0.43312101910828"; depth 157 ; known ; N/A GL192692.1 samtools variation 1470000 1470000 . . . alleles " A T"; frequencies " 0.276190476190476 0.723809523809524"; depth 105 ; unknown ; N/A GL192692.1 samtools variation 1513865 1513865 . . . alleles " G T"; frequencies " 0.486486486486487 0.513513513513513"; depth 37 ; unknown ; synonymous GL192692.1 samtools variation 1537122 1537122 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192692.1 samtools variation 1537820 1537820 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 52 ; unknown ; N/A GL192692.1 samtools variation 1538202 1538202 . . . alleles " G C"; frequencies " 0.595744680851064 0.404255319148936"; depth 47 ; unknown ; N/A GL192692.1 samtools variation 1556879 1556879 . . . alleles " C T"; frequencies " 0.719178082191781 0.280821917808219"; depth 146 ; unknown ; synonymous GL192692.1 samtools variation 1557117 1557117 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL192692.1 samtools variation 1557542 1557542 . . . alleles " C A"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL192692.1 samtools variation 1557848 1557848 . . . alleles " G T"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; unknown ; N/A GL192692.1 samtools variation 1558665 1558665 . . . alleles " C T"; frequencies " 0.765957446808511 0.234042553191489"; depth 47 ; unknown ; N/A GL192692.1 samtools variation 1559123 1559123 . . . alleles " T C"; frequencies " 0.685185185185185 0.314814814814815"; depth 54 ; unknown ; N/A GL192692.1 samtools variation 1559269 1559269 . . . alleles " G A"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL192692.1 samtools variation 1559388 1559388 . . . alleles " C A"; frequencies " 0.781818181818182 0.218181818181818"; depth 55 ; unknown ; N/A GL192692.1 samtools variation 1559391 1559391 . . . alleles " T C"; frequencies " 0.654545454545455 0.345454545454545"; depth 55 ; unknown ; N/A GL192692.1 samtools variation 1569644 1569644 . . . alleles " A C"; frequencies " 0.314285714285714 0.685714285714286"; depth 70 ; known ; N/A GL192693.1 samtools variation 518768 518768 . . . alleles " G T"; frequencies " 0.689320388349515 0.310679611650485"; depth 103 ; unknown ; N/A GL192693.1 samtools variation 770046 770046 . . . alleles " C T"; frequencies " 0.786127167630058 0.213872832369942"; depth 173 ; known ; non-synonymous GL192693.1 samtools variation 781129 781129 . . . alleles " C A"; frequencies " 0.411764705882353 0.588235294117647"; depth 85 ; unknown ; synonymous GL192693.1 samtools variation 781509 781509 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192693.1 samtools variation 784305 784305 . . . alleles " A G"; frequencies " 0.371859296482412 0.628140703517588"; depth 199 ; unknown ; synonymous GL192693.1 samtools variation 786158 786158 . . . alleles " C T"; frequencies " 0.383333333333333 0.616666666666667"; depth 120 ; unknown ; synonymous GL192693.1 samtools variation 786473 786473 . . . alleles " T A"; frequencies " 0.457831325301205 0.542168674698795"; depth 83 ; unknown ; N/A GL192694.1 samtools variation 680383 680383 . . . alleles " T C"; frequencies " 0.607843137254902 0.392156862745098"; depth 51 ; unknown ; N/A GL192694.1 samtools variation 688195 688195 . . . alleles " C A"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL192694.1 samtools variation 688453 688453 . . . alleles " G C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192694.1 samtools variation 690772 690772 . . . alleles " T C"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192694.1 samtools variation 692268 692268 . . . alleles " A G"; frequencies " 0.623188405797101 0.376811594202899"; depth 138 ; known ; N/A GL192694.1 samtools variation 695846 695846 . . . alleles " A G"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; known ; N/A GL192694.1 samtools variation 696820 696820 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192694.1 samtools variation 701329 701329 . . . alleles " G A"; frequencies " 0.632 0.368"; depth 125 ; unknown ; N/A GL192694.1 samtools variation 703265 703265 . . . alleles " G A"; frequencies " 0.292929292929293 0.707070707070707"; depth 198 ; known ; N/A GL192694.1 samtools variation 704146 704146 . . . alleles " A G"; frequencies " 0.511111111111111 0.488888888888889"; depth 90 ; known ; N/A GL192694.1 samtools variation 705133 705133 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 138 ; known ; N/A GL192694.1 samtools variation 715960 715960 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192694.1 samtools variation 847465 847465 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192694.1 samtools variation 851338 851338 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192694.1 samtools variation 853918 853918 . . . alleles " C T"; frequencies " 0.530612244897959 0.469387755102041"; depth 147 ; known ; synonymous GL192694.1 samtools variation 856137 856137 . . . alleles " C G"; frequencies " 0.476190476190476 0.523809523809524"; depth 42 ; known ; N/A GL192694.1 samtools variation 856153 856153 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; known ; N/A GL192694.1 samtools variation 856250 856250 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL192694.1 samtools variation 856354 856354 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192694.1 samtools variation 862014 862014 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192694.1 samtools variation 869788 869788 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192694.1 samtools variation 870589 870589 . . . alleles " C A"; frequencies " 0.78099173553719 0.216942148760331"; depth 484 ; unknown ; synonymous GL192694.1 samtools variation 870871 870871 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192694.1 samtools variation 871987 871987 . . . alleles " G A"; frequencies " 0.575 0.425"; depth 120 ; known ; N/A GL192694.1 samtools variation 877792 877792 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL192694.1 samtools variation 878046 878046 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192694.1 samtools variation 878231 878231 . . . alleles " A G"; frequencies " 0.487179487179487 0.512820512820513"; depth 39 ; known ; N/A GL192694.1 samtools variation 878315 878315 . . . alleles " G A"; frequencies " 0.51219512195122 0.48780487804878"; depth 41 ; known ; non-synonymous GL192694.1 samtools variation 878334 878334 . . . alleles " C G"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; known ; non-synonymous GL192694.1 samtools variation 878398 878398 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 35 ; known ; N/A GL192694.1 samtools variation 878670 878670 . . . alleles " G A"; frequencies " 0.775 0.225"; depth 40 ; unknown ; non-synonymous GL192694.1 samtools variation 878932 878932 . . . alleles " G A"; frequencies " 0.435897435897436 0.564102564102564"; depth 78 ; known ; synonymous GL192694.1 samtools variation 881851 881851 . . . alleles " T C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192694.1 samtools variation 884920 884920 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192694.1 samtools variation 885369 885369 . . . alleles " T G"; frequencies " 0.741379310344828 0.258620689655172"; depth 58 ; unknown ; N/A GL192694.1 samtools variation 885371 885371 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 55 ; unknown ; N/A GL192694.1 samtools variation 907162 907162 . . . alleles " A G"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192694.1 samtools variation 907425 907425 . . . alleles " A G"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL192694.1 samtools variation 907523 907523 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL192694.1 samtools variation 907672 907672 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL192694.1 samtools variation 907845 907845 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192694.1 samtools variation 907975 907975 . . . alleles " T G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192694.1 samtools variation 907997 907997 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL192694.1 samtools variation 908091 908091 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192694.1 samtools variation 908178 908178 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192694.1 samtools variation 908936 908936 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 156 ; unknown ; N/A GL192694.1 samtools variation 908941 908941 . . . alleles " C T"; frequencies " 0.420382165605096 0.579617834394904"; depth 157 ; known ; N/A GL192694.1 samtools variation 914008 914008 . . . alleles " G A"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192694.1 samtools variation 918716 918716 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192694.1 samtools variation 920752 920752 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192694.1 samtools variation 922610 922610 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192694.1 samtools variation 949810 949810 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192694.1 samtools variation 950328 950328 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192694.1 samtools variation 950341 950341 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192694.1 samtools variation 1053297 1053297 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; synonymous GL192694.1 samtools variation 1053315 1053315 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; synonymous GL192694.1 samtools variation 1056134 1056134 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; unknown ; synonymous GL192694.1 samtools variation 1056277 1056277 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; non-synonymous GL192694.1 samtools variation 1056322 1056322 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; non-synonymous GL192695.1 samtools variation 106783 106783 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192695.1 samtools variation 152096 152096 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192695.1 samtools variation 883338 883338 . . . alleles " C T"; frequencies " 0.506493506493506 0.493506493506494"; depth 231 ; known ; synonymous GL192695.1 samtools variation 886366 886366 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192695.1 samtools variation 891477 891477 . . . alleles " T G"; frequencies " 0.588235294117647 0.411764705882353"; depth 102 ; known ; synonymous GL192695.1 samtools variation 891648 891648 . . . alleles " G A"; frequencies " 0.766233766233766 0.233766233766234"; depth 77 ; unknown ; synonymous GL192695.1 samtools variation 892156 892156 . . . alleles " A G"; frequencies " 0.646153846153846 0.353846153846154"; depth 195 ; known ; N/A GL192695.1 samtools variation 901744 901744 . . . alleles " C T"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192695.1 samtools variation 904754 904754 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192695.1 samtools variation 907721 907721 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192695.1 samtools variation 1168346 1168346 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192695.1 samtools variation 1189429 1189429 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192695.1 samtools variation 1190288 1190288 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192695.1 samtools variation 1191205 1191205 . . . alleles " C A"; frequencies " 0.694915254237288 0.305084745762712"; depth 59 ; unknown ; N/A GL192695.1 samtools variation 1192481 1192481 . . . alleles " C A"; frequencies " 0.64 0.36"; depth 50 ; unknown ; N/A GL192695.1 samtools variation 1192618 1192618 . . . alleles " A G"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192695.1 samtools variation 1289233 1289233 . . . alleles " G A"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL192695.1 samtools variation 1296525 1296525 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192695.1 samtools variation 1302567 1302567 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192695.1 samtools variation 1304867 1304867 . . . alleles " G A"; frequencies " 0.794326241134752 0.205673758865248"; depth 141 ; unknown ; N/A GL192695.1 samtools variation 1308994 1308994 . . . alleles " T A"; frequencies " 0.408256880733945 0.587155963302752"; depth 218 ; unknown ; N/A GL192695.1 samtools variation 1310133 1310133 . . . alleles " G C"; frequencies " 0.635350318471338 0.364649681528662"; depth 1256 ; unknown ; N/A GL192695.1 samtools variation 1434718 1434718 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; synonymous GL192696.1 samtools variation 1555445 1555445 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192696.1 samtools variation 1597997 1597997 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; known ; N/A GL192697.1 samtools variation 40000 40000 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 51 ; unknown ; synonymous GL192697.1 samtools variation 40231 40231 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; synonymous GL192697.1 samtools variation 40443 40443 . . . alleles " G A"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; non-synonymous GL192697.1 samtools variation 40477 40477 . . . alleles " A T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; non-synonymous GL192697.1 samtools variation 145550 145550 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 57 ; unknown ; N/A GL192697.1 samtools variation 146846 146846 . . . alleles " G C"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL192697.1 samtools variation 148660 148660 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL192697.1 samtools variation 150653 150653 . . . alleles " G T"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; unknown ; N/A GL192697.1 samtools variation 312711 312711 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192697.1 samtools variation 312993 312993 . . . alleles " T A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192697.1 samtools variation 315344 315344 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL192697.1 samtools variation 315563 315563 . . . alleles " A C"; frequencies " 0.294871794871795 0.67948717948718"; depth 78 ; unknown ; N/A GL192697.1 samtools variation 316287 316287 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192697.1 samtools variation 316305 316305 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192697.1 samtools variation 316401 316401 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192697.1 samtools variation 319063 319063 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192697.1 samtools variation 321457 321457 . . . alleles " A T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192697.1 samtools variation 332793 332793 . . . alleles " G A"; frequencies " 0.55719557195572 0.44280442804428"; depth 542 ; unknown ; non-synonymous GL192697.1 samtools variation 589403 589403 . . . alleles " A C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192697.1 samtools variation 596956 596956 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192697.1 samtools variation 598535 598535 . . . alleles " C T"; frequencies " 0.796875 0.203125"; depth 64 ; unknown ; N/A GL192699.1 samtools variation 83053 83053 . . . alleles " C G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192699.1 samtools variation 84668 84668 . . . alleles " T C"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192699.1 samtools variation 91491 91491 . . . alleles " G A"; frequencies " 0.623655913978495 0.376344086021505"; depth 93 ; unknown ; synonymous GL192699.1 samtools variation 95599 95599 . . . alleles " C T"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; unknown ; N/A GL192699.1 samtools variation 96776 96776 . . . alleles " A G"; frequencies " 0.584905660377358 0.415094339622642"; depth 106 ; unknown ; N/A GL192699.1 samtools variation 201382 201382 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; synonymous GL192699.1 samtools variation 287708 287708 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192699.1 samtools variation 506941 506941 . . . alleles " G A"; frequencies " 0.732647814910026 0.267352185089974"; depth 389 ; unknown ; synonymous GL192699.1 samtools variation 709618 709618 . . . alleles " A G"; frequencies " 0.417721518987342 0.582278481012658"; depth 79 ; unknown ; N/A GL192699.1 samtools variation 726333 726333 . . . alleles " C T"; frequencies " 0.796505652620761 0.201952723535457"; depth 1946 ; unknown ; non-synonymous GL192699.1 samtools variation 744052 744052 . . . alleles " A G"; frequencies " 0.22 0.78"; depth 50 ; unknown ; synonymous GL192699.1 samtools variation 746251 746251 . . . alleles " G T"; frequencies " 0.480769230769231 0.519230769230769"; depth 104 ; unknown ; synonymous GL192699.1 samtools variation 746353 746353 . . . alleles " G A"; frequencies " 0.205882352941176 0.794117647058823"; depth 68 ; unknown ; synonymous GL192699.1 samtools variation 747047 747047 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; non-synonymous GL192699.1 samtools variation 758175 758175 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL192699.1 samtools variation 1110044 1110044 . . . alleles " C T"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; N/A GL192699.1 samtools variation 1111409 1111409 . . . alleles " G T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192699.1 samtools variation 1111463 1111463 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192699.1 samtools variation 1251371 1251371 . . . alleles " C T"; frequencies " 0.293333333333333 0.706666666666667"; depth 75 ; unknown ; N/A GL192699.1 samtools variation 1252152 1252152 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; synonymous GL192699.1 samtools variation 1340490 1340490 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192699.1 samtools variation 1348550 1348550 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192699.1 samtools variation 1433477 1433477 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192699.1 samtools variation 1527644 1527644 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192699.1 samtools variation 1532149 1532149 . . . alleles " G A"; frequencies " 0.795698924731183 0.204301075268817"; depth 93 ; unknown ; synonymous GL192699.1 samtools variation 1555931 1555931 . . . alleles " C G"; frequencies " 0.725490196078431 0.274509803921569"; depth 153 ; unknown ; N/A GL192699.1 samtools variation 1555941 1555941 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 150 ; unknown ; N/A GL192699.1 samtools variation 1556845 1556845 . . . alleles " A G"; frequencies " 0.563636363636364 0.436363636363636"; depth 220 ; unknown ; N/A GL192699.1 samtools variation 1560076 1560076 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192699.1 samtools variation 1560543 1560543 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192699.1 samtools variation 1567061 1567061 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192699.1 samtools variation 1573221 1573221 . . . alleles " C T"; frequencies " 0.766666666666667 0.233333333333333"; depth 90 ; unknown ; N/A GL192699.1 samtools variation 1582953 1582953 . . . alleles " G A"; frequencies " 0.753623188405797 0.246376811594203"; depth 69 ; unknown ; N/A GL192699.1 samtools variation 1583018 1583018 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 84 ; known ; N/A GL192699.1 samtools variation 1583082 1583082 . . . alleles " G A"; frequencies " 0.364341085271318 0.635658914728682"; depth 129 ; known ; N/A GL192699.1 samtools variation 1583743 1583743 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192699.1 samtools variation 1590673 1590673 . . . alleles " G A"; frequencies " 0.7421875 0.2578125"; depth 256 ; unknown ; non-synonymous GL192699.1 samtools variation 1590759 1590759 . . . alleles " C T"; frequencies " 0.456273764258555 0.543726235741445"; depth 263 ; unknown ; N/A GL192699.1 samtools variation 1590893 1590893 . . . alleles " A G"; frequencies " 0.453271028037383 0.546728971962617"; depth 214 ; unknown ; N/A GL192699.1 samtools variation 1590978 1590978 . . . alleles " G A"; frequencies " 0.424354243542435 0.575645756457565"; depth 271 ; known ; synonymous GL192699.1 samtools variation 1591005 1591005 . . . alleles " A G"; frequencies " 0.43558282208589 0.56441717791411"; depth 163 ; known ; synonymous GL192699.1 samtools variation 1592755 1592755 . . . alleles " G A"; frequencies " 0.428184281842818 0.571815718157182"; depth 369 ; known ; synonymous GL192699.1 samtools variation 1592770 1592770 . . . alleles " A G"; frequencies " 0.41005291005291 0.58994708994709"; depth 378 ; known ; synonymous GL192699.1 samtools variation 1592855 1592855 . . . alleles " G A"; frequencies " 0.447761194029851 0.552238805970149"; depth 268 ; known ; non-synonymous GL192699.1 samtools variation 1592927 1592927 . . . alleles " A G"; frequencies " 0.757281553398058 0.242718446601942"; depth 103 ; unknown ; non-synonymous GL192699.1 samtools variation 1592996 1592996 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192699.1 samtools variation 1593450 1593450 . . . alleles " A G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192699.1 samtools variation 1594749 1594749 . . . alleles " T A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192699.1 samtools variation 1594839 1594839 . . . alleles " T G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192699.1 samtools variation 1597281 1597281 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192700.1 samtools variation 24112 24112 . . . alleles " G A"; frequencies " 0.422222222222222 0.577777777777778"; depth 45 ; known ; synonymous GL192700.1 samtools variation 34110 34110 . . . alleles " T C"; frequencies " 0.732558139534884 0.267441860465116"; depth 86 ; known ; N/A GL192700.1 samtools variation 34644 34644 . . . alleles " C T"; frequencies " 0.645933014354067 0.354066985645933"; depth 209 ; unknown ; N/A GL192700.1 samtools variation 36278 36278 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 81 ; unknown ; N/A GL192700.1 samtools variation 36509 36509 . . . alleles " T C"; frequencies " 0.683333333333333 0.316666666666667"; depth 240 ; unknown ; N/A GL192700.1 samtools variation 38816 38816 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192700.1 samtools variation 39479 39479 . . . alleles " G T"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; unknown ; N/A GL192700.1 samtools variation 39576 39576 . . . alleles " T G"; frequencies " 0.411764705882353 0.588235294117647"; depth 51 ; unknown ; N/A GL192700.1 samtools variation 40189 40189 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL192700.1 samtools variation 40745 40745 . . . alleles " G A"; frequencies " 0.798245614035088 0.201754385964912"; depth 228 ; unknown ; synonymous GL192700.1 samtools variation 129378 129378 . . . alleles " T A"; frequencies " 0.734375 0.265625"; depth 64 ; unknown ; non-synonymous GL192700.1 samtools variation 134373 134373 . . . alleles " A G"; frequencies " 0.372881355932203 0.627118644067797"; depth 59 ; known ; synonymous GL192700.1 samtools variation 161688 161688 . . . alleles " C A"; frequencies " 0.58 0.42"; depth 100 ; unknown ; N/A GL192700.1 samtools variation 163521 163521 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192700.1 samtools variation 180286 180286 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL192700.1 samtools variation 185558 185558 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 45 ; unknown ; synonymous GL192700.1 samtools variation 229227 229227 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192700.1 samtools variation 230596 230596 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; non-synonymous GL192700.1 samtools variation 234560 234560 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192700.1 samtools variation 236078 236078 . . . alleles " C T"; frequencies " 0.698275862068966 0.301724137931034"; depth 116 ; unknown ; N/A GL192700.1 samtools variation 236955 236955 . . . alleles " G A"; frequencies " 0.737704918032787 0.262295081967213"; depth 61 ; unknown ; synonymous GL192700.1 samtools variation 238740 238740 . . . alleles " A G"; frequencies " 0.721311475409836 0.278688524590164"; depth 61 ; unknown ; synonymous GL192700.1 samtools variation 239864 239864 . . . alleles " A G"; frequencies " 0.696428571428571 0.303571428571429"; depth 56 ; unknown ; synonymous GL192700.1 samtools variation 240132 240132 . . . alleles " G A"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; synonymous GL192700.1 samtools variation 241098 241098 . . . alleles " C T"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; unknown ; synonymous GL192700.1 samtools variation 241113 241113 . . . alleles " A G"; frequencies " 0.755102040816326 0.244897959183673"; depth 49 ; unknown ; synonymous GL192700.1 samtools variation 251380 251380 . . . alleles " T C"; frequencies " 0.48936170212766 0.51063829787234"; depth 47 ; unknown ; synonymous GL192700.1 samtools variation 260687 260687 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; N/A GL192700.1 samtools variation 263308 263308 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192700.1 samtools variation 267629 267629 . . . alleles " C T"; frequencies " 0.706896551724138 0.293103448275862"; depth 58 ; unknown ; non-synonymous GL192700.1 samtools variation 286683 286683 . . . alleles " G A"; frequencies " 0.67479674796748 0.32520325203252"; depth 123 ; unknown ; N/A GL192700.1 samtools variation 290512 290512 . . . alleles " G A"; frequencies " 0.754901960784314 0.245098039215686"; depth 102 ; unknown ; synonymous GL192700.1 samtools variation 290747 290747 . . . alleles " A G"; frequencies " 0.793969849246231 0.206030150753769"; depth 199 ; unknown ; synonymous GL192700.1 samtools variation 290786 290786 . . . alleles " C T"; frequencies " 0.690355329949239 0.309644670050761"; depth 197 ; unknown ; synonymous GL192700.1 samtools variation 294826 294826 . . . alleles " G A"; frequencies " 0.621621621621622 0.378378378378378"; depth 74 ; unknown ; synonymous GL192700.1 samtools variation 297272 297272 . . . alleles " G A"; frequencies " 0.770949720670391 0.229050279329609"; depth 358 ; unknown ; N/A GL192700.1 samtools variation 385478 385478 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192700.1 samtools variation 479502 479502 . . . alleles " T G"; frequencies " 0.5 0.490384615384615"; depth 104 ; unknown ; N/A GL192700.1 samtools variation 489530 489530 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192700.1 samtools variation 492555 492555 . . . alleles " C A"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192700.1 samtools variation 493408 493408 . . . alleles " A C"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192700.1 samtools variation 493555 493555 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 56 ; unknown ; N/A GL192700.1 samtools variation 497846 497846 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192700.1 samtools variation 504662 504662 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192700.1 samtools variation 508445 508445 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192700.1 samtools variation 512804 512804 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192700.1 samtools variation 513672 513672 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192700.1 samtools variation 587114 587114 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192700.1 samtools variation 587123 587123 . . . alleles " G T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL192700.1 samtools variation 592385 592385 . . . alleles " T C"; frequencies " 0.341935483870968 0.658064516129032"; depth 155 ; known ; N/A GL192700.1 samtools variation 592451 592451 . . . alleles " A G"; frequencies " 0.336330935251799 0.663669064748201"; depth 556 ; known ; N/A GL192700.1 samtools variation 593495 593495 . . . alleles " A C"; frequencies " 0.257936507936508 0.740740740740741"; depth 756 ; known ; N/A GL192700.1 samtools variation 602343 602343 . . . alleles " C A"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL192700.1 samtools variation 603384 603384 . . . alleles " T C"; frequencies " 0.225490196078431 0.774509803921569"; depth 102 ; unknown ; N/A GL192700.1 samtools variation 604579 604579 . . . alleles " G C"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192700.1 samtools variation 604961 604961 . . . alleles " C T"; frequencies " 0.464255677039529 0.534903280067283"; depth 1189 ; unknown ; synonymous GL192700.1 samtools variation 607381 607381 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192700.1 samtools variation 607382 607382 . . . alleles " C G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192700.1 samtools variation 613199 613199 . . . alleles " G C"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; known ; N/A GL192700.1 samtools variation 613329 613329 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 25 ; known ; N/A GL192700.1 samtools variation 613432 613432 . . . alleles " A C"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; unknown ; N/A GL192700.1 samtools variation 615753 615753 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192700.1 samtools variation 616060 616060 . . . alleles " T G"; frequencies " 0.472136222910217 0.527863777089783"; depth 646 ; known ; synonymous GL192700.1 samtools variation 616269 616269 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192700.1 samtools variation 616596 616596 . . . alleles " T C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL192700.1 samtools variation 618139 618139 . . . alleles " C A"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; known ; N/A GL192700.1 samtools variation 621384 621384 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192700.1 samtools variation 638128 638128 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192700.1 samtools variation 639925 639925 . . . alleles " T C"; frequencies " 0.358974358974359 0.641025641025641"; depth 39 ; unknown ; N/A GL192700.1 samtools variation 644390 644390 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192700.1 samtools variation 645957 645957 . . . alleles " G C"; frequencies " 0.409722222222222 0.590277777777778"; depth 720 ; unknown ; non-synonymous GL192700.1 samtools variation 654332 654332 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 36 ; known ; N/A GL192700.1 samtools variation 665205 665205 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192700.1 samtools variation 668380 668380 . . . alleles " T A"; frequencies " 0.369047619047619 0.630952380952381"; depth 84 ; known ; N/A GL192700.1 samtools variation 674680 674680 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; known ; N/A GL192700.1 samtools variation 677352 677352 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192700.1 samtools variation 781496 781496 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL192700.1 samtools variation 787386 787386 . . . alleles " G A"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; N/A GL192700.1 samtools variation 802915 802915 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 68 ; known ; non-synonymous GL192700.1 samtools variation 886359 886359 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192700.1 samtools variation 917929 917929 . . . alleles " T C"; frequencies " 0.23134328358209 0.76865671641791"; depth 134 ; unknown ; synonymous GL192700.1 samtools variation 935211 935211 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192700.1 samtools variation 935222 935222 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192700.1 samtools variation 935325 935325 . . . alleles " G C"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; N/A GL192700.1 samtools variation 937303 937303 . . . alleles " A T"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL192700.1 samtools variation 937555 937555 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192700.1 samtools variation 938980 938980 . . . alleles " G A"; frequencies " 0.755102040816326 0.244897959183673"; depth 49 ; known ; N/A GL192700.1 samtools variation 939202 939202 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 76 ; unknown ; N/A GL192700.1 samtools variation 1452689 1452689 . . . alleles " T C"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; N/A GL192700.1 samtools variation 1452878 1452878 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192700.1 samtools variation 1506807 1506807 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 50 ; known ; synonymous GL192700.1 samtools variation 1509170 1509170 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192700.1 samtools variation 1514495 1514495 . . . alleles " T C"; frequencies " 0.422222222222222 0.577777777777778"; depth 90 ; unknown ; N/A GL192700.1 samtools variation 1520920 1520920 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192700.1 samtools variation 1528452 1528452 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 48 ; unknown ; N/A GL192700.1 samtools variation 1540832 1540832 . . . alleles " G A"; frequencies " 0.79047619047619 0.20952380952381"; depth 105 ; unknown ; synonymous GL192700.1 samtools variation 1570831 1570831 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 60 ; unknown ; synonymous GL192701.1 samtools variation 347746 347746 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192701.1 samtools variation 539337 539337 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192701.1 samtools variation 961955 961955 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192701.1 samtools variation 982761 982761 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192701.1 samtools variation 1004527 1004527 . . . alleles " T G"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192701.1 samtools variation 1020746 1020746 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192701.1 samtools variation 1063118 1063118 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192701.1 samtools variation 1247622 1247622 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192701.1 samtools variation 1255529 1255529 . . . alleles " A G"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192701.1 samtools variation 1262767 1262767 . . . alleles " G A"; frequencies " 0.715909090909091 0.284090909090909"; depth 88 ; unknown ; synonymous GL192701.1 samtools variation 1264429 1264429 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 32 ; known ; N/A GL192703.1 samtools variation 1595 1595 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 40 ; unknown ; N/A GL192703.1 samtools variation 1811 1811 . . . alleles " G A"; frequencies " 0.315789473684211 0.684210526315789"; depth 38 ; known ; N/A GL192703.1 samtools variation 21269 21269 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192703.1 samtools variation 24335 24335 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192703.1 samtools variation 27864 27864 . . . alleles " C T"; frequencies " 0.47887323943662 0.52112676056338"; depth 71 ; known ; synonymous GL192703.1 samtools variation 28041 28041 . . . alleles " C T"; frequencies " 0.342342342342342 0.657657657657658"; depth 111 ; known ; synonymous GL192703.1 samtools variation 30965 30965 . . . alleles " C T"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; known ; N/A GL192703.1 samtools variation 31065 31065 . . . alleles " G A"; frequencies " 0.376470588235294 0.623529411764706"; depth 85 ; known ; N/A GL192703.1 samtools variation 31185 31185 . . . alleles " C A"; frequencies " 0.464285714285714 0.535714285714286"; depth 56 ; known ; N/A GL192703.1 samtools variation 31456 31456 . . . alleles " G C"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; known ; N/A GL192703.1 samtools variation 39372 39372 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192703.1 samtools variation 40503 40503 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL192703.1 samtools variation 49650 49650 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; unknown ; N/A GL192703.1 samtools variation 51139 51139 . . . alleles " T A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192703.1 samtools variation 65979 65979 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192703.1 samtools variation 72574 72574 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 40 ; known ; N/A GL192703.1 samtools variation 74886 74886 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192703.1 samtools variation 75272 75272 . . . alleles " C T"; frequencies " 0.465116279069767 0.534883720930233"; depth 43 ; known ; N/A GL192703.1 samtools variation 75572 75572 . . . alleles " C G"; frequencies " 0.788732394366197 0.211267605633803"; depth 71 ; unknown ; N/A GL192703.1 samtools variation 76392 76392 . . . alleles " T C"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL192703.1 samtools variation 76541 76541 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192703.1 samtools variation 76928 76928 . . . alleles " T C"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL192703.1 samtools variation 77581 77581 . . . alleles " A C"; frequencies " 0.580645161290323 0.419354838709677"; depth 93 ; known ; N/A GL192703.1 samtools variation 78260 78260 . . . alleles " A C"; frequencies " 0.548571428571429 0.451428571428571"; depth 175 ; known ; N/A GL192703.1 samtools variation 78352 78352 . . . alleles " A G"; frequencies " 0.443396226415094 0.556603773584906"; depth 106 ; known ; N/A GL192703.1 samtools variation 78509 78509 . . . alleles " C T"; frequencies " 0.639344262295082 0.360655737704918"; depth 61 ; known ; N/A GL192703.1 samtools variation 78658 78658 . . . alleles " G A"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; known ; N/A GL192703.1 samtools variation 78677 78677 . . . alleles " T C"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; known ; N/A GL192703.1 samtools variation 78778 78778 . . . alleles " G A"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; known ; N/A GL192703.1 samtools variation 78803 78803 . . . alleles " A T"; frequencies " 0.565217391304348 0.434782608695652"; depth 46 ; known ; N/A GL192703.1 samtools variation 78904 78904 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 39 ; known ; N/A GL192703.1 samtools variation 79146 79146 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; known ; N/A GL192703.1 samtools variation 79323 79323 . . . alleles " C T"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; known ; N/A GL192703.1 samtools variation 79800 79800 . . . alleles " A G"; frequencies " 0.467391304347826 0.532608695652174"; depth 92 ; known ; N/A GL192703.1 samtools variation 80257 80257 . . . alleles " A G"; frequencies " 0.511111111111111 0.488888888888889"; depth 45 ; known ; N/A GL192703.1 samtools variation 104471 104471 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192703.1 samtools variation 118865 118865 . . . alleles " T C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192703.1 samtools variation 119847 119847 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192703.1 samtools variation 119865 119865 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192703.1 samtools variation 119939 119939 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192703.1 samtools variation 120004 120004 . . . alleles " C A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192703.1 samtools variation 120341 120341 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192703.1 samtools variation 120542 120542 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192703.1 samtools variation 120598 120598 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192703.1 samtools variation 120705 120705 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192703.1 samtools variation 121226 121226 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192703.1 samtools variation 123038 123038 . . . alleles " G T"; frequencies " 0.524781341107872 0.475218658892128"; depth 686 ; unknown ; synonymous GL192703.1 samtools variation 124124 124124 . . . alleles " T C"; frequencies " 0.669014084507042 0.330985915492958"; depth 142 ; unknown ; N/A GL192703.1 samtools variation 124298 124298 . . . alleles " C T"; frequencies " 0.508620689655172 0.491379310344828"; depth 232 ; unknown ; N/A GL192703.1 samtools variation 124428 124428 . . . alleles " G A"; frequencies " 0.52991452991453 0.47008547008547"; depth 117 ; unknown ; N/A GL192703.1 samtools variation 124474 124474 . . . alleles " A G"; frequencies " 0.546511627906977 0.453488372093023"; depth 172 ; unknown ; N/A GL192703.1 samtools variation 125300 125300 . . . alleles " C G"; frequencies " 0.658783783783784 0.341216216216216"; depth 296 ; unknown ; N/A GL192703.1 samtools variation 127766 127766 . . . alleles " T C"; frequencies " 0.221635883905013 0.778364116094987"; depth 379 ; known ; N/A GL192703.1 samtools variation 129049 129049 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192703.1 samtools variation 129282 129282 . . . alleles " A C"; frequencies " 0.48936170212766 0.51063829787234"; depth 47 ; unknown ; N/A GL192703.1 samtools variation 129816 129816 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 42 ; known ; N/A GL192703.1 samtools variation 132830 132830 . . . alleles " A G"; frequencies " 0.21969696969697 0.78030303030303"; depth 132 ; known ; N/A GL192703.1 samtools variation 133612 133612 . . . alleles " A C"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL192703.1 samtools variation 138499 138499 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192703.1 samtools variation 141109 141109 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192703.1 samtools variation 142993 142993 . . . alleles " T A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192703.1 samtools variation 147481 147481 . . . alleles " A G"; frequencies " 0.257142857142857 0.742857142857143"; depth 35 ; unknown ; N/A GL192703.1 samtools variation 160171 160171 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; synonymous GL192703.1 samtools variation 160198 160198 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; synonymous GL192703.1 samtools variation 205645 205645 . . . alleles " A G"; frequencies " 0.417721518987342 0.582278481012658"; depth 79 ; known ; N/A GL192703.1 samtools variation 206000 206000 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192703.1 samtools variation 206031 206031 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192703.1 samtools variation 206068 206068 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192703.1 samtools variation 206635 206635 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192703.1 samtools variation 206974 206974 . . . alleles " G A"; frequencies " 0.577777777777778 0.422222222222222"; depth 45 ; known ; N/A GL192703.1 samtools variation 207125 207125 . . . alleles " C T"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; known ; N/A GL192703.1 samtools variation 207162 207162 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; known ; N/A GL192703.1 samtools variation 207507 207507 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; known ; N/A GL192703.1 samtools variation 207537 207537 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 30 ; known ; N/A GL192703.1 samtools variation 208214 208214 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL192703.1 samtools variation 270142 270142 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192703.1 samtools variation 347301 347301 . . . alleles " A G"; frequencies " 0.236842105263158 0.763157894736842"; depth 76 ; known ; N/A GL192703.1 samtools variation 377698 377698 . . . alleles " T C"; frequencies " 0.558823529411765 0.441176470588235"; depth 68 ; known ; N/A GL192703.1 samtools variation 435402 435402 . . . alleles " T C"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL192703.1 samtools variation 435537 435537 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192703.1 samtools variation 440901 440901 . . . alleles " T C"; frequencies " 0.232876712328767 0.767123287671233"; depth 146 ; unknown ; N/A GL192703.1 samtools variation 447400 447400 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 57 ; unknown ; N/A GL192703.1 samtools variation 524446 524446 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 148 ; unknown ; N/A GL192703.1 samtools variation 537999 537999 . . . alleles " G A"; frequencies " 0.28125 0.71875"; depth 64 ; unknown ; N/A GL192703.1 samtools variation 538904 538904 . . . alleles " C T"; frequencies " 0.781512605042017 0.218487394957983"; depth 119 ; unknown ; synonymous GL192703.1 samtools variation 541719 541719 . . . alleles " A C"; frequencies " 0.427672955974843 0.572327044025157"; depth 159 ; unknown ; N/A GL192703.1 samtools variation 592612 592612 . . . alleles " G A"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL192703.1 samtools variation 623215 623215 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192703.1 samtools variation 629217 629217 . . . alleles " T A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192703.1 samtools variation 636327 636327 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192703.1 samtools variation 637276 637276 . . . alleles " C T"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL192703.1 samtools variation 644734 644734 . . . alleles " G A"; frequencies " 0.381818181818182 0.618181818181818"; depth 55 ; unknown ; N/A GL192703.1 samtools variation 647814 647814 . . . alleles " G A"; frequencies " 0.477272727272727 0.522727272727273"; depth 176 ; unknown ; N/A GL192703.1 samtools variation 689685 689685 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192703.1 samtools variation 713575 713575 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 52 ; unknown ; synonymous GL192703.1 samtools variation 720092 720092 . . . alleles " C T"; frequencies " 0.729323308270677 0.270676691729323"; depth 133 ; unknown ; synonymous GL192703.1 samtools variation 721519 721519 . . . alleles " C T"; frequencies " 0.679245283018868 0.320754716981132"; depth 53 ; unknown ; N/A GL192703.1 samtools variation 741303 741303 . . . alleles " T C"; frequencies " 0.525 0.475"; depth 80 ; known ; non-synonymous GL192703.1 samtools variation 777866 777866 . . . alleles " C A"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL192703.1 samtools variation 814397 814397 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192703.1 samtools variation 846108 846108 . . . alleles " T G"; frequencies " 0.4375 0.5625"; depth 32 ; unknown ; synonymous GL192703.1 samtools variation 876636 876636 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192703.1 samtools variation 880827 880827 . . . alleles " C T"; frequencies " 0.639004149377593 0.360995850622407"; depth 241 ; unknown ; N/A GL192703.1 samtools variation 924332 924332 . . . alleles " C T"; frequencies " 0.602739726027397 0.397260273972603"; depth 73 ; unknown ; synonymous GL192703.1 samtools variation 969849 969849 . . . alleles " G A"; frequencies " 0.556818181818182 0.443181818181818"; depth 88 ; unknown ; non-synonymous GL192703.1 samtools variation 974020 974020 . . . alleles " C T"; frequencies " 0.787671232876712 0.212328767123288"; depth 146 ; unknown ; N/A GL192703.1 samtools variation 978326 978326 . . . alleles " C T"; frequencies " 0.372549019607843 0.627450980392157"; depth 102 ; unknown ; N/A GL192703.1 samtools variation 983155 983155 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192703.1 samtools variation 988840 988840 . . . alleles " A G"; frequencies " 0.205621301775148 0.794378698224852"; depth 676 ; known ; N/A GL192703.1 samtools variation 989442 989442 . . . alleles " C A"; frequencies " 0.502777777777778 0.497222222222222"; depth 360 ; unknown ; non-synonymous GL192703.1 samtools variation 991831 991831 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192703.1 samtools variation 993961 993961 . . . alleles " T G"; frequencies " 0.40625 0.59375"; depth 32 ; known ; N/A GL192703.1 samtools variation 1009041 1009041 . . . alleles " C T"; frequencies " 0.446428571428571 0.553571428571429"; depth 56 ; unknown ; synonymous GL192703.1 samtools variation 1023258 1023258 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL192703.1 samtools variation 1023863 1023863 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 30 ; unknown ; synonymous GL192703.1 samtools variation 1037670 1037670 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192703.1 samtools variation 1059267 1059267 . . . alleles " T C"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL192703.1 samtools variation 1064598 1064598 . . . alleles " G A"; frequencies " 0.272189349112426 0.727810650887574"; depth 169 ; unknown ; non-synonymous GL192703.1 samtools variation 1066393 1066393 . . . alleles " C G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL192703.1 samtools variation 1105364 1105364 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; non-synonymous GL192703.1 samtools variation 1107264 1107264 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; non-synonymous GL192703.1 samtools variation 1178469 1178469 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192703.1 samtools variation 1180435 1180435 . . . alleles " A G"; frequencies " 0.787878787878788 0.212121212121212"; depth 132 ; unknown ; synonymous GL192703.1 samtools variation 1181890 1181890 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192703.1 samtools variation 1182758 1182758 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; synonymous GL192703.1 samtools variation 1183036 1183036 . . . alleles " T C"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL192703.1 samtools variation 1183445 1183445 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192703.1 samtools variation 1184802 1184802 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192703.1 samtools variation 1184837 1184837 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192703.1 samtools variation 1185028 1185028 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192703.1 samtools variation 1186082 1186082 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192703.1 samtools variation 1220955 1220955 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192703.1 samtools variation 1264988 1264988 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192703.1 samtools variation 1275118 1275118 . . . alleles " C T"; frequencies " 0.204545454545455 0.795454545454545"; depth 44 ; unknown ; N/A GL192703.1 samtools variation 1275236 1275236 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; unknown ; N/A GL192703.1 samtools variation 1295130 1295130 . . . alleles " A G"; frequencies " 0.328358208955224 0.671641791044776"; depth 67 ; unknown ; N/A GL192703.1 samtools variation 1295138 1295138 . . . alleles " C T"; frequencies " 0.671428571428571 0.328571428571429"; depth 70 ; unknown ; N/A GL192703.1 samtools variation 1295311 1295311 . . . alleles " G T"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; known ; N/A GL192703.1 samtools variation 1295519 1295519 . . . alleles " A G"; frequencies " 0.511705685618729 0.488294314381271"; depth 299 ; unknown ; N/A GL192703.1 samtools variation 1295534 1295534 . . . alleles " A G"; frequencies " 0.529605263157895 0.470394736842105"; depth 304 ; unknown ; N/A GL192703.1 samtools variation 1296161 1296161 . . . alleles " C T"; frequencies " 0.48559670781893 0.51440329218107"; depth 243 ; known ; N/A GL192703.1 samtools variation 1298995 1298995 . . . alleles " C T"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192703.1 samtools variation 1300893 1300893 . . . alleles " T C"; frequencies " 0.607142857142857 0.392857142857143"; depth 56 ; known ; N/A GL192703.1 samtools variation 1304938 1304938 . . . alleles " T C"; frequencies " 0.492753623188406 0.507246376811594"; depth 69 ; known ; N/A GL192703.1 samtools variation 1305093 1305093 . . . alleles " A T"; frequencies " 0.481012658227848 0.518987341772152"; depth 79 ; unknown ; N/A GL192703.1 samtools variation 1306624 1306624 . . . alleles " C T"; frequencies " 0.501054111033029 0.497540407589599"; depth 1423 ; known ; N/A GL192703.1 samtools variation 1307194 1307194 . . . alleles " G C"; frequencies " 0.556218905472637 0.443781094527363"; depth 1005 ; known ; N/A GL192703.1 samtools variation 1356875 1356875 . . . alleles " T G"; frequencies " 0.385964912280702 0.614035087719298"; depth 57 ; unknown ; synonymous GL192703.1 samtools variation 1378077 1378077 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192703.1 samtools variation 1390479 1390479 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192703.1 samtools variation 1400283 1400283 . . . alleles " A G"; frequencies " 0.245283018867925 0.754716981132076"; depth 53 ; known ; N/A GL192703.1 samtools variation 1404722 1404722 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 58 ; unknown ; non-synonymous GL192703.1 samtools variation 1474788 1474788 . . . alleles " A G"; frequencies " 0.224806201550388 0.775193798449612"; depth 129 ; known ; synonymous GL192703.1 samtools variation 1475107 1475107 . . . alleles " T C"; frequencies " 0.509090909090909 0.490909090909091"; depth 220 ; known ; synonymous GL192703.1 samtools variation 1475821 1475821 . . . alleles " G T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192703.1 samtools variation 1529974 1529974 . . . alleles " C T"; frequencies " 0.709923664122137 0.290076335877863"; depth 131 ; unknown ; N/A GL192703.1 samtools variation 1532126 1532126 . . . alleles " T A"; frequencies " 0.565573770491803 0.434426229508197"; depth 122 ; known ; N/A GL192703.1 samtools variation 1532270 1532270 . . . alleles " A G"; frequencies " 0.256637168141593 0.743362831858407"; depth 113 ; known ; N/A GL192703.1 samtools variation 1532581 1532581 . . . alleles " G A"; frequencies " 0.452380952380952 0.547619047619048"; depth 168 ; known ; N/A GL192703.1 samtools variation 1533129 1533129 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 196 ; known ; N/A GL192703.1 samtools variation 1535995 1535995 . . . alleles " G C"; frequencies " 0.568627450980392 0.431372549019608"; depth 204 ; known ; N/A GL192703.1 samtools variation 1538977 1538977 . . . alleles " A T"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL192703.1 samtools variation 1539029 1539029 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL192703.1 samtools variation 1540922 1540922 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192703.1 samtools variation 1542424 1542424 . . . alleles " T A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192703.1 samtools variation 1547325 1547325 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192703.1 samtools variation 1547341 1547341 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192703.1 samtools variation 1548467 1548467 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192704.1 samtools variation 1047225 1047225 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; non-synonymous GL192704.1 samtools variation 1256120 1256120 . . . alleles " C G"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; N/A GL192704.1 samtools variation 1257460 1257460 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192704.1 samtools variation 1260887 1260887 . . . alleles " C T"; frequencies " 0.266568483063328 0.733431516936672"; depth 679 ; unknown ; N/A GL192704.1 samtools variation 1261089 1261089 . . . alleles " G A"; frequencies " 0.204022988505747 0.795977011494253"; depth 348 ; unknown ; N/A GL192704.1 samtools variation 1261576 1261576 . . . alleles " T C"; frequencies " 0.247297297297297 0.752702702702703"; depth 740 ; unknown ; N/A GL192704.1 samtools variation 1262371 1262371 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL192704.1 samtools variation 1265206 1265206 . . . alleles " G C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192704.1 samtools variation 1267144 1267144 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192704.1 samtools variation 1267497 1267497 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192704.1 samtools variation 1269114 1269114 . . . alleles " A T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL192704.1 samtools variation 1269772 1269772 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL192704.1 samtools variation 1270664 1270664 . . . alleles " T A"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; unknown ; N/A GL192704.1 samtools variation 1271730 1271730 . . . alleles " T C"; frequencies " 0.206484641638225 0.793515358361775"; depth 586 ; unknown ; synonymous GL192704.1 samtools variation 1273323 1273323 . . . alleles " C T"; frequencies " 0.234375 0.765625"; depth 64 ; unknown ; N/A GL192704.1 samtools variation 1276989 1276989 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192704.1 samtools variation 1282314 1282314 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192704.1 samtools variation 1283305 1283305 . . . alleles " T G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192704.1 samtools variation 1283313 1283313 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192704.1 samtools variation 1285478 1285478 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192704.1 samtools variation 1301704 1301704 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192704.1 samtools variation 1311237 1311237 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192704.1 samtools variation 1317494 1317494 . . . alleles " C A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192704.1 samtools variation 1320385 1320385 . . . alleles " A G"; frequencies " 0.666666666666667 0.266666666666667"; depth 15 ; unknown ; N/A GL192704.1 samtools variation 1320816 1320816 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192704.1 samtools variation 1320829 1320829 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192704.1 samtools variation 1321064 1321064 . . . alleles " C T"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL192704.1 samtools variation 1321363 1321363 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192704.1 samtools variation 1321418 1321418 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192704.1 samtools variation 1321658 1321658 . . . alleles " C A"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; N/A GL192704.1 samtools variation 1321703 1321703 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; N/A GL192704.1 samtools variation 1321736 1321736 . . . alleles " C G"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192704.1 samtools variation 1321949 1321949 . . . alleles " T G"; frequencies " 0.607142857142857 0.392857142857143"; depth 56 ; unknown ; N/A GL192704.1 samtools variation 1321961 1321961 . . . alleles " C T"; frequencies " 0.607142857142857 0.392857142857143"; depth 56 ; unknown ; N/A GL192704.1 samtools variation 1328787 1328787 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192704.1 samtools variation 1328974 1328974 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192704.1 samtools variation 1329373 1329373 . . . alleles " A G"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL192704.1 samtools variation 1329456 1329456 . . . alleles " T C"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; N/A GL192704.1 samtools variation 1329463 1329463 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; unknown ; N/A GL192704.1 samtools variation 1330196 1330196 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192704.1 samtools variation 1330220 1330220 . . . alleles " A G"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; N/A GL192704.1 samtools variation 1330262 1330262 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192704.1 samtools variation 1330832 1330832 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192704.1 samtools variation 1335652 1335652 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192704.1 samtools variation 1341635 1341635 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192704.1 samtools variation 1341695 1341695 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192704.1 samtools variation 1344486 1344486 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192704.1 samtools variation 1345599 1345599 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192704.1 samtools variation 1345617 1345617 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192704.1 samtools variation 1348378 1348378 . . . alleles " G A"; frequencies " 0.457142857142857 0.542857142857143"; depth 420 ; unknown ; synonymous GL192704.1 samtools variation 1352250 1352250 . . . alleles " T C"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; N/A GL192704.1 samtools variation 1353164 1353164 . . . alleles " A T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192704.1 samtools variation 1353802 1353802 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192704.1 samtools variation 1353874 1353874 . . . alleles " A C"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192704.1 samtools variation 1355129 1355129 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192704.1 samtools variation 1355889 1355889 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192704.1 samtools variation 1355947 1355947 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL192704.1 samtools variation 1357882 1357882 . . . alleles " C A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192704.1 samtools variation 1359081 1359081 . . . alleles " C G"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL192704.1 samtools variation 1359202 1359202 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192704.1 samtools variation 1359221 1359221 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192704.1 samtools variation 1360234 1360234 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 72 ; unknown ; N/A GL192704.1 samtools variation 1361723 1361723 . . . alleles " G T"; frequencies " 0.782608695652174 0.217391304347826"; depth 69 ; unknown ; N/A GL192704.1 samtools variation 1362414 1362414 . . . alleles " C T"; frequencies " 0.74 0.26"; depth 50 ; unknown ; N/A GL192704.1 samtools variation 1365963 1365963 . . . alleles " T G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192704.1 samtools variation 1366969 1366969 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192704.1 samtools variation 1367472 1367472 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192704.1 samtools variation 1368300 1368300 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192704.1 samtools variation 1368367 1368367 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192704.1 samtools variation 1368862 1368862 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192704.1 samtools variation 1370441 1370441 . . . alleles " C G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192704.1 samtools variation 1370891 1370891 . . . alleles " G A"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192704.1 samtools variation 1372090 1372090 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192704.1 samtools variation 1374697 1374697 . . . alleles " G A"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL192704.1 samtools variation 1374755 1374755 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192704.1 samtools variation 1375020 1375020 . . . alleles " G A"; frequencies " 0.452380952380952 0.547619047619048"; depth 42 ; unknown ; N/A GL192704.1 samtools variation 1377945 1377945 . . . alleles " A C"; frequencies " 0.463529411764706 0.536470588235294"; depth 425 ; unknown ; non-synonymous GL192704.1 samtools variation 1380275 1380275 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192704.1 samtools variation 1383083 1383083 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192704.1 samtools variation 1383329 1383329 . . . alleles " G A"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; unknown ; N/A GL192704.1 samtools variation 1386766 1386766 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192704.1 samtools variation 1387607 1387607 . . . alleles " C G"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL192704.1 samtools variation 1387642 1387642 . . . alleles " C T"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL192704.1 samtools variation 1388001 1388001 . . . alleles " T C"; frequencies " 0.66 0.34"; depth 50 ; unknown ; N/A GL192704.1 samtools variation 1389767 1389767 . . . alleles " A G"; frequencies " 0.799019607843137 0.200980392156863"; depth 204 ; unknown ; synonymous GL192704.1 samtools variation 1390075 1390075 . . . alleles " C T"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; N/A GL192704.1 samtools variation 1390106 1390106 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192704.1 samtools variation 1395321 1395321 . . . alleles " C G"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; unknown ; N/A GL192704.1 samtools variation 1398139 1398139 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192704.1 samtools variation 1398348 1398348 . . . alleles " G C"; frequencies " 0.565217391304348 0.347826086956522"; depth 46 ; unknown ; N/A GL192704.1 samtools variation 1400076 1400076 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL192704.1 samtools variation 1407830 1407830 . . . alleles " C T"; frequencies " 0.518987341772152 0.481012658227848"; depth 237 ; unknown ; synonymous GL192704.1 samtools variation 1414313 1414313 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192704.1 samtools variation 1414336 1414336 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192704.1 samtools variation 1458744 1458744 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192704.1 samtools variation 1463744 1463744 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192704.1 samtools variation 1470549 1470549 . . . alleles " C A"; frequencies " 0.314285714285714 0.685714285714286"; depth 35 ; known ; N/A GL192704.1 samtools variation 1471297 1471297 . . . alleles " A G"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; unknown ; N/A GL192704.1 samtools variation 1474511 1474511 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192704.1 samtools variation 1477008 1477008 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192704.1 samtools variation 1477071 1477071 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192704.1 samtools variation 1557180 1557180 . . . alleles " G C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192704.1 samtools variation 1558691 1558691 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192704.1 samtools variation 1559696 1559696 . . . alleles " C T"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL192704.1 samtools variation 1560128 1560128 . . . alleles " C A"; frequencies " 0.294117647058824 0.705882352941177"; depth 68 ; known ; N/A GL192704.1 samtools variation 1560175 1560175 . . . alleles " A G"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; known ; N/A GL192704.1 samtools variation 1560201 1560201 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192704.1 samtools variation 1560202 1560202 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192706.1 samtools variation 1235069 1235069 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192706.1 samtools variation 1289682 1289682 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192707.1 samtools variation 678580 678580 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; synonymous GL192707.1 samtools variation 686296 686296 . . . alleles " T G"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; synonymous GL192707.1 samtools variation 1125575 1125575 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192707.1 samtools variation 1208630 1208630 . . . alleles " A G"; frequencies " 0.274509803921569 0.725490196078431"; depth 51 ; known ; N/A GL192707.1 samtools variation 1209091 1209091 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; known ; N/A GL192707.1 samtools variation 1209153 1209153 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 51 ; known ; N/A GL192707.1 samtools variation 1209451 1209451 . . . alleles " A C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192707.1 samtools variation 1470831 1470831 . . . alleles " A C"; frequencies " 0.509090909090909 0.490909090909091"; depth 55 ; unknown ; N/A GL192708.1 samtools variation 776254 776254 . . . alleles " A G"; frequencies " 0.423913043478261 0.565217391304348"; depth 184 ; unknown ; synonymous GL192708.1 samtools variation 1072063 1072063 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 152 ; unknown ; N/A GL192708.1 samtools variation 1072066 1072066 . . . alleles " A G"; frequencies " 0.394557823129252 0.605442176870748"; depth 147 ; unknown ; N/A GL192708.1 samtools variation 1073720 1073720 . . . alleles " C T"; frequencies " 0.458715596330275 0.541284403669725"; depth 109 ; unknown ; non-synonymous GL192708.1 samtools variation 1078614 1078614 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192708.1 samtools variation 1330271 1330271 . . . alleles " A G"; frequencies " 0.372759856630824 0.627240143369176"; depth 279 ; unknown ; N/A GL192708.1 samtools variation 1473136 1473136 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192708.1 samtools variation 1519408 1519408 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192709.1 samtools variation 437069 437069 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192709.1 samtools variation 441836 441836 . . . alleles " C T"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; known ; N/A GL192709.1 samtools variation 441897 441897 . . . alleles " T A"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; known ; N/A GL192709.1 samtools variation 442258 442258 . . . alleles " C T"; frequencies " 0.413793103448276 0.586206896551724"; depth 58 ; unknown ; N/A GL192709.1 samtools variation 442590 442590 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192709.1 samtools variation 443011 443011 . . . alleles " G A"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; known ; N/A GL192709.1 samtools variation 444818 444818 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192709.1 samtools variation 903508 903508 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192709.1 samtools variation 1208680 1208680 . . . alleles " A G"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; N/A GL192709.1 samtools variation 1252458 1252458 . . . alleles " T G"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL192709.1 samtools variation 1262131 1262131 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192709.1 samtools variation 1275698 1275698 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL192710.1 samtools variation 112612 112612 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 36 ; unknown ; N/A GL192710.1 samtools variation 113385 113385 . . . alleles " C G"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL192710.1 samtools variation 113796 113796 . . . alleles " G A"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL192710.1 samtools variation 114074 114074 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192710.1 samtools variation 114123 114123 . . . alleles " C G"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192710.1 samtools variation 114218 114218 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192710.1 samtools variation 117924 117924 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192710.1 samtools variation 118850 118850 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192710.1 samtools variation 118869 118869 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192710.1 samtools variation 119598 119598 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192710.1 samtools variation 203162 203162 . . . alleles " C G"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; N/A GL192710.1 samtools variation 257606 257606 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 49 ; known ; N/A GL192710.1 samtools variation 262160 262160 . . . alleles " G T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192710.1 samtools variation 265627 265627 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192710.1 samtools variation 304527 304527 . . . alleles " T G"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192710.1 samtools variation 621635 621635 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 66 ; known ; synonymous GL192710.1 samtools variation 673337 673337 . . . alleles " G A"; frequencies " 0.661971830985915 0.338028169014085"; depth 71 ; unknown ; synonymous GL192710.1 samtools variation 676687 676687 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 70 ; unknown ; synonymous GL192710.1 samtools variation 715042 715042 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL192710.1 samtools variation 715046 715046 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL192710.1 samtools variation 715960 715960 . . . alleles " T G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192710.1 samtools variation 716273 716273 . . . alleles " T A"; frequencies " 0.8 0.2"; depth 35 ; known ; N/A GL192710.1 samtools variation 1368615 1368615 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; synonymous GL192710.1 samtools variation 1385931 1385931 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192710.1 samtools variation 1387270 1387270 . . . alleles " G A"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; N/A GL192710.1 samtools variation 1390082 1390082 . . . alleles " A G"; frequencies " 0.759259259259259 0.240740740740741"; depth 54 ; unknown ; N/A GL192712.1 samtools variation 1135248 1135248 . . . alleles " G A"; frequencies " 0.404255319148936 0.595744680851064"; depth 141 ; unknown ; N/A GL192712.1 samtools variation 1328961 1328961 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192712.1 samtools variation 1330984 1330984 . . . alleles " T C"; frequencies " 0.74468085106383 0.25531914893617"; depth 47 ; unknown ; N/A GL192712.1 samtools variation 1331806 1331806 . . . alleles " C T"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL192712.1 samtools variation 1333885 1333885 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; known ; N/A GL192713.1 samtools variation 109691 109691 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; N/A GL192713.1 samtools variation 229269 229269 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192713.1 samtools variation 252367 252367 . . . alleles " G A"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; synonymous GL192713.1 samtools variation 276546 276546 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; synonymous GL192713.1 samtools variation 278146 278146 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192713.1 samtools variation 281682 281682 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; unknown ; synonymous GL192713.1 samtools variation 283217 283217 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192713.1 samtools variation 283339 283339 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 55 ; unknown ; synonymous GL192713.1 samtools variation 283525 283525 . . . alleles " G A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192713.1 samtools variation 283935 283935 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 39 ; unknown ; N/A GL192713.1 samtools variation 290380 290380 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192713.1 samtools variation 380286 380286 . . . alleles " T C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; synonymous GL192713.1 samtools variation 380485 380485 . . . alleles " C A"; frequencies " 0.528301886792453 0.471698113207547"; depth 53 ; unknown ; non-synonymous GL192713.1 samtools variation 394375 394375 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192713.1 samtools variation 397290 397290 . . . alleles " A T"; frequencies " 0.576923076923077 0.423076923076923"; depth 78 ; unknown ; synonymous GL192713.1 samtools variation 397377 397377 . . . alleles " A G"; frequencies " 0.626865671641791 0.373134328358209"; depth 67 ; unknown ; synonymous GL192713.1 samtools variation 412781 412781 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192713.1 samtools variation 414205 414205 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192713.1 samtools variation 415608 415608 . . . alleles " C A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192713.1 samtools variation 421522 421522 . . . alleles " A T"; frequencies " 0.491525423728814 0.508474576271186"; depth 59 ; unknown ; synonymous GL192713.1 samtools variation 425477 425477 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192713.1 samtools variation 425496 425496 . . . alleles " T G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192713.1 samtools variation 698937 698937 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192713.1 samtools variation 1152087 1152087 . . . alleles " A C"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192713.1 samtools variation 1152113 1152113 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL192713.1 samtools variation 1217792 1217792 . . . alleles " A G"; frequencies " 0.610526315789474 0.389473684210526"; depth 95 ; known ; N/A GL192713.1 samtools variation 1221200 1221200 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192713.1 samtools variation 1235095 1235095 . . . alleles " G A"; frequencies " 0.774193548387097 0.225806451612903"; depth 93 ; unknown ; non-synonymous GL192713.1 samtools variation 1252212 1252212 . . . alleles " C T"; frequencies " 0.233333333333333 0.766666666666667"; depth 30 ; known ; N/A GL192713.1 samtools variation 1254690 1254690 . . . alleles " G A"; frequencies " 0.395833333333333 0.604166666666667"; depth 96 ; unknown ; N/A GL192713.1 samtools variation 1254748 1254748 . . . alleles " T C"; frequencies " 0.380952380952381 0.619047619047619"; depth 42 ; known ; N/A GL192713.1 samtools variation 1277833 1277833 . . . alleles " A C"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; N/A GL192713.1 samtools variation 1293350 1293350 . . . alleles " G A"; frequencies " 0.458823529411765 0.541176470588235"; depth 85 ; known ; synonymous GL192714.1 samtools variation 47998 47998 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 42 ; known ; N/A GL192714.1 samtools variation 48555 48555 . . . alleles " T C"; frequencies " 0.342723004694836 0.657276995305164"; depth 213 ; known ; N/A GL192714.1 samtools variation 48846 48846 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 120 ; known ; N/A GL192714.1 samtools variation 51040 51040 . . . alleles " C G"; frequencies " 0.466019417475728 0.533980582524272"; depth 103 ; known ; synonymous GL192714.1 samtools variation 720651 720651 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192714.1 samtools variation 724292 724292 . . . alleles " T G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL192714.1 samtools variation 829086 829086 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192714.1 samtools variation 1408297 1408297 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; synonymous GL192715.1 samtools variation 1499131 1499131 . . . alleles " C T"; frequencies " 0.413333333333333 0.586666666666667"; depth 150 ; unknown ; N/A GL192715.1 samtools variation 1516941 1516941 . . . alleles " T C"; frequencies " 0.367816091954023 0.632183908045977"; depth 87 ; unknown ; N/A GL192715.1 samtools variation 1517033 1517033 . . . alleles " G A"; frequencies " 0.653465346534653 0.346534653465347"; depth 101 ; unknown ; N/A GL192715.1 samtools variation 1517277 1517277 . . . alleles " G C"; frequencies " 0.62037037037037 0.37962962962963"; depth 108 ; unknown ; N/A GL192715.1 samtools variation 1549212 1549212 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; unknown ; N/A GL192715.1 samtools variation 1551796 1551796 . . . alleles " A G"; frequencies " 0.243243243243243 0.756756756756757"; depth 37 ; known ; N/A GL192716.1 samtools variation 641210 641210 . . . alleles " T A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; non-synonymous GL192717.1 samtools variation 36276 36276 . . . alleles " G C"; frequencies " 0.505376344086022 0.494623655913978"; depth 93 ; known ; non-synonymous GL192717.1 samtools variation 61396 61396 . . . alleles " G A"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; known ; N/A GL192717.1 samtools variation 62152 62152 . . . alleles " T C"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; known ; N/A GL192717.1 samtools variation 62206 62206 . . . alleles " G A"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; unknown ; N/A GL192717.1 samtools variation 62207 62207 . . . alleles " A T"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; unknown ; N/A GL192717.1 samtools variation 64917 64917 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 36 ; known ; N/A GL192717.1 samtools variation 121684 121684 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192717.1 samtools variation 255320 255320 . . . alleles " A C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192717.1 samtools variation 255463 255463 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192717.1 samtools variation 343462 343462 . . . alleles " C A"; frequencies " 0.73469387755102 0.26530612244898"; depth 49 ; unknown ; synonymous GL192717.1 samtools variation 380307 380307 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192717.1 samtools variation 383603 383603 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; synonymous GL192717.1 samtools variation 480462 480462 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192717.1 samtools variation 483718 483718 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; synonymous GL192717.1 samtools variation 492566 492566 . . . alleles " A G"; frequencies " 0.387096774193548 0.612903225806452"; depth 155 ; known ; N/A GL192717.1 samtools variation 493751 493751 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; known ; N/A GL192717.1 samtools variation 493857 493857 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL192717.1 samtools variation 494086 494086 . . . alleles " G A"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; known ; N/A GL192717.1 samtools variation 496580 496580 . . . alleles " C T"; frequencies " 0.387755102040816 0.612244897959184"; depth 49 ; known ; N/A GL192717.1 samtools variation 497810 497810 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL192717.1 samtools variation 502819 502819 . . . alleles " G C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192717.1 samtools variation 503276 503276 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192717.1 samtools variation 511183 511183 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 91 ; known ; N/A GL192717.1 samtools variation 513483 513483 . . . alleles " C A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192717.1 samtools variation 514041 514041 . . . alleles " C A"; frequencies " 0.212765957446809 0.787234042553192"; depth 47 ; known ; N/A GL192717.1 samtools variation 610445 610445 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192717.1 samtools variation 611339 611339 . . . alleles " G A"; frequencies " 0.563758389261745 0.436241610738255"; depth 149 ; unknown ; synonymous GL192717.1 samtools variation 767249 767249 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 57 ; unknown ; N/A GL192717.1 samtools variation 786356 786356 . . . alleles " C T"; frequencies " 0.552845528455285 0.447154471544715"; depth 123 ; known ; synonymous GL192717.1 samtools variation 786374 786374 . . . alleles " T C"; frequencies " 0.524193548387097 0.475806451612903"; depth 124 ; known ; synonymous GL192717.1 samtools variation 790323 790323 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192717.1 samtools variation 792608 792608 . . . alleles " C T"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; known ; N/A GL192717.1 samtools variation 792707 792707 . . . alleles " C T"; frequencies " 0.390243902439024 0.609756097560976"; depth 41 ; known ; N/A GL192717.1 samtools variation 795703 795703 . . . alleles " T C"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL192717.1 samtools variation 800185 800185 . . . alleles " G A"; frequencies " 0.563218390804598 0.436781609195402"; depth 261 ; unknown ; N/A GL192717.1 samtools variation 800824 800824 . . . alleles " C T"; frequencies " 0.436115843270869 0.563884156729131"; depth 587 ; unknown ; N/A GL192717.1 samtools variation 808125 808125 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192718.1 samtools variation 5120 5120 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL192718.1 samtools variation 38906 38906 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192718.1 samtools variation 73242 73242 . . . alleles " G A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; non-synonymous GL192718.1 samtools variation 144022 144022 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192718.1 samtools variation 175672 175672 . . . alleles " T C"; frequencies " 0.28169014084507 0.71830985915493"; depth 71 ; known ; synonymous GL192718.1 samtools variation 181075 181075 . . . alleles " G T"; frequencies " 0.632352941176471 0.367647058823529"; depth 68 ; known ; N/A GL192718.1 samtools variation 181200 181200 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 35 ; known ; N/A GL192718.1 samtools variation 181800 181800 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL192718.1 samtools variation 181816 181816 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192718.1 samtools variation 181961 181961 . . . alleles " G T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192718.1 samtools variation 182003 182003 . . . alleles " G C"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192718.1 samtools variation 182165 182165 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192718.1 samtools variation 182896 182896 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 30 ; known ; N/A GL192718.1 samtools variation 183597 183597 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192718.1 samtools variation 184138 184138 . . . alleles " T A"; frequencies " 0.260869565217391 0.739130434782609"; depth 46 ; known ; N/A GL192718.1 samtools variation 184359 184359 . . . alleles " T C"; frequencies " 0.682539682539683 0.317460317460317"; depth 63 ; known ; N/A GL192718.1 samtools variation 185778 185778 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 44 ; known ; N/A GL192718.1 samtools variation 186682 186682 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192718.1 samtools variation 186788 186788 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192718.1 samtools variation 186840 186840 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 39 ; known ; N/A GL192718.1 samtools variation 187097 187097 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL192718.1 samtools variation 187159 187159 . . . alleles " G A"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; known ; N/A GL192718.1 samtools variation 191265 191265 . . . alleles " T A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192718.1 samtools variation 197399 197399 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192718.1 samtools variation 427250 427250 . . . alleles " G C"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; unknown ; N/A GL192718.1 samtools variation 427459 427459 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 65 ; unknown ; N/A GL192718.1 samtools variation 427489 427489 . . . alleles " T G"; frequencies " 0.661290322580645 0.338709677419355"; depth 62 ; unknown ; N/A GL192718.1 samtools variation 428243 428243 . . . alleles " C T"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; unknown ; non-synonymous GL192718.1 samtools variation 432348 432348 . . . alleles " G C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192718.1 samtools variation 434500 434500 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192718.1 samtools variation 434560 434560 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192718.1 samtools variation 436308 436308 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 32 ; unknown ; N/A GL192718.1 samtools variation 437067 437067 . . . alleles " C T"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL192718.1 samtools variation 437877 437877 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL192718.1 samtools variation 439534 439534 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192718.1 samtools variation 1144884 1144884 . . . alleles " C A"; frequencies " 0.226415094339623 0.773584905660377"; depth 106 ; known ; N/A GL192718.1 samtools variation 1167315 1167315 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192718.1 samtools variation 1180542 1180542 . . . alleles " T C"; frequencies " 0.33974358974359 0.66025641025641"; depth 156 ; known ; synonymous GL192718.1 samtools variation 1224749 1224749 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192718.1 samtools variation 1225208 1225208 . . . alleles " A T"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; unknown ; N/A GL192718.1 samtools variation 1225550 1225550 . . . alleles " T C"; frequencies " 0.225903614457831 0.774096385542169"; depth 332 ; unknown ; N/A GL192718.1 samtools variation 1225598 1225598 . . . alleles " A G"; frequencies " 0.232 0.768"; depth 250 ; unknown ; N/A GL192718.1 samtools variation 1225671 1225671 . . . alleles " T C"; frequencies " 0.241258741258741 0.758741258741259"; depth 286 ; unknown ; synonymous GL192718.1 samtools variation 1226161 1226161 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 34 ; unknown ; N/A GL192718.1 samtools variation 1226716 1226716 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 26 ; unknown ; N/A GL192718.1 samtools variation 1226798 1226798 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192718.1 samtools variation 1226908 1226908 . . . alleles " A G"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192718.1 samtools variation 1226958 1226958 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL192718.1 samtools variation 1227087 1227087 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL192718.1 samtools variation 1227121 1227121 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192718.1 samtools variation 1227194 1227194 . . . alleles " T A"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL192718.1 samtools variation 1227288 1227288 . . . alleles " T G"; frequencies " 0.324324324324324 0.675675675675676"; depth 37 ; unknown ; N/A GL192718.1 samtools variation 1229723 1229723 . . . alleles " A G"; frequencies " 0.288461538461538 0.711538461538462"; depth 52 ; unknown ; N/A GL192718.1 samtools variation 1229816 1229816 . . . alleles " G C"; frequencies " 0.391304347826087 0.608695652173913"; depth 46 ; unknown ; N/A GL192718.1 samtools variation 1229840 1229840 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; unknown ; N/A GL192718.1 samtools variation 1230000 1230000 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192718.1 samtools variation 1230060 1230060 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192718.1 samtools variation 1230110 1230110 . . . alleles " T C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192718.1 samtools variation 1230157 1230157 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL192718.1 samtools variation 1230332 1230332 . . . alleles " G A"; frequencies " 0.418604651162791 0.581395348837209"; depth 43 ; unknown ; N/A GL192718.1 samtools variation 1230421 1230421 . . . alleles " A G"; frequencies " 0.252873563218391 0.747126436781609"; depth 87 ; unknown ; N/A GL192718.1 samtools variation 1230735 1230735 . . . alleles " G C"; frequencies " 0.644736842105263 0.355263157894737"; depth 76 ; unknown ; N/A GL192718.1 samtools variation 1230774 1230774 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 64 ; unknown ; N/A GL192719.1 samtools variation 494245 494245 . . . alleles " C A"; frequencies " 0.745098039215686 0.254901960784314"; depth 204 ; unknown ; N/A GL192719.1 samtools variation 503009 503009 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192719.1 samtools variation 521128 521128 . . . alleles " A T"; frequencies " 0.725274725274725 0.274725274725275"; depth 91 ; unknown ; non-synonymous GL192719.1 samtools variation 551468 551468 . . . alleles " T C"; frequencies " 0.52 0.48"; depth 50 ; unknown ; synonymous GL192719.1 samtools variation 573005 573005 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; synonymous GL192719.1 samtools variation 620264 620264 . . . alleles " A G"; frequencies " 0.660714285714286 0.339285714285714"; depth 56 ; unknown ; non-synonymous GL192719.1 samtools variation 644584 644584 . . . alleles " T C"; frequencies " 0.244444444444444 0.755555555555556"; depth 90 ; known ; non-synonymous GL192719.1 samtools variation 644638 644638 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 115 ; unknown ; non-synonymous GL192719.1 samtools variation 651442 651442 . . . alleles " G A"; frequencies " 0.297872340425532 0.702127659574468"; depth 47 ; unknown ; N/A GL192719.1 samtools variation 651450 651450 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 63 ; unknown ; N/A GL192719.1 samtools variation 651483 651483 . . . alleles " C A"; frequencies " 0.376811594202899 0.623188405797101"; depth 69 ; unknown ; N/A GL192719.1 samtools variation 652222 652222 . . . alleles " G A"; frequencies " 0.223140495867769 0.776859504132231"; depth 121 ; unknown ; N/A GL192719.1 samtools variation 652892 652892 . . . alleles " G A"; frequencies " 0.241379310344828 0.758620689655172"; depth 58 ; unknown ; N/A GL192719.1 samtools variation 653888 653888 . . . alleles " G A"; frequencies " 0.541666666666667 0.458333333333333"; depth 48 ; unknown ; N/A GL192719.1 samtools variation 653899 653899 . . . alleles " G A"; frequencies " 0.577777777777778 0.422222222222222"; depth 45 ; unknown ; N/A GL192719.1 samtools variation 654294 654294 . . . alleles " C T"; frequencies " 0.692982456140351 0.307017543859649"; depth 114 ; unknown ; N/A GL192719.1 samtools variation 660472 660472 . . . alleles " G C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192719.1 samtools variation 666244 666244 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192719.1 samtools variation 709765 709765 . . . alleles " G A"; frequencies " 0.725274725274725 0.274725274725275"; depth 91 ; unknown ; synonymous GL192719.1 samtools variation 1045394 1045394 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192719.1 samtools variation 1047407 1047407 . . . alleles " G T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192719.1 samtools variation 1231683 1231683 . . . alleles " A G"; frequencies " 0.691525423728814 0.308474576271186"; depth 295 ; known ; synonymous GL192720.1 samtools variation 711206 711206 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192720.1 samtools variation 711447 711447 . . . alleles " T G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192720.1 samtools variation 712194 712194 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192720.1 samtools variation 753230 753230 . . . alleles " A C"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192720.1 samtools variation 768653 768653 . . . alleles " C T"; frequencies " 0.409638554216867 0.590361445783133"; depth 83 ; known ; N/A GL192720.1 samtools variation 769583 769583 . . . alleles " T C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192720.1 samtools variation 772449 772449 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192720.1 samtools variation 772867 772867 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192720.1 samtools variation 772896 772896 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192720.1 samtools variation 785037 785037 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192720.1 samtools variation 785056 785056 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192720.1 samtools variation 785366 785366 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192720.1 samtools variation 840213 840213 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192720.1 samtools variation 842483 842483 . . . alleles " G A"; frequencies " 0.382716049382716 0.617283950617284"; depth 81 ; known ; N/A GL192720.1 samtools variation 843183 843183 . . . alleles " G A"; frequencies " 0.794520547945205 0.205479452054795"; depth 146 ; unknown ; N/A GL192720.1 samtools variation 843403 843403 . . . alleles " T C"; frequencies " 0.626334519572954 0.373665480427046"; depth 281 ; known ; N/A GL192720.1 samtools variation 844095 844095 . . . alleles " A G"; frequencies " 0.567901234567901 0.432098765432099"; depth 162 ; known ; N/A GL192720.1 samtools variation 850950 850950 . . . alleles " G T"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; known ; N/A GL192720.1 samtools variation 851509 851509 . . . alleles " T G"; frequencies " 0.409090909090909 0.590909090909091"; depth 44 ; known ; N/A GL192720.1 samtools variation 851759 851759 . . . alleles " A G"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; unknown ; N/A GL192720.1 samtools variation 856113 856113 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL192720.1 samtools variation 856161 856161 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192720.1 samtools variation 856369 856369 . . . alleles " T C"; frequencies " 0.355932203389831 0.644067796610169"; depth 59 ; known ; N/A GL192720.1 samtools variation 911496 911496 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192720.1 samtools variation 935215 935215 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL192720.1 samtools variation 964656 964656 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192720.1 samtools variation 966364 966364 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192720.1 samtools variation 970408 970408 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 88 ; unknown ; N/A GL192720.1 samtools variation 981750 981750 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192720.1 samtools variation 981800 981800 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192720.1 samtools variation 1015841 1015841 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192720.1 samtools variation 1085910 1085910 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 77 ; unknown ; synonymous GL192720.1 samtools variation 1086391 1086391 . . . alleles " T C"; frequencies " 0.747663551401869 0.252336448598131"; depth 107 ; unknown ; synonymous GL192720.1 samtools variation 1088844 1088844 . . . alleles " G A"; frequencies " 0.791139240506329 0.208860759493671"; depth 158 ; unknown ; synonymous GL192720.1 samtools variation 1092552 1092552 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 52 ; unknown ; N/A GL192720.1 samtools variation 1117557 1117557 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192720.1 samtools variation 1117564 1117564 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192720.1 samtools variation 1123163 1123163 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192720.1 samtools variation 1126518 1126518 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 35 ; unknown ; N/A GL192720.1 samtools variation 1126555 1126555 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192720.1 samtools variation 1127828 1127828 . . . alleles " T G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192720.1 samtools variation 1128744 1128744 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192720.1 samtools variation 1131656 1131656 . . . alleles " C A"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; unknown ; N/A GL192720.1 samtools variation 1131745 1131745 . . . alleles " A T"; frequencies " 0.518518518518518 0.481481481481481"; depth 54 ; unknown ; N/A GL192720.1 samtools variation 1133695 1133695 . . . alleles " A G"; frequencies " 0.422222222222222 0.577777777777778"; depth 45 ; unknown ; N/A GL192720.1 samtools variation 1134143 1134143 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 56 ; unknown ; N/A GL192720.1 samtools variation 1134870 1134870 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL192720.1 samtools variation 1134945 1134945 . . . alleles " A G"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; N/A GL192720.1 samtools variation 1134970 1134970 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; unknown ; N/A GL192720.1 samtools variation 1135216 1135216 . . . alleles " G A"; frequencies " 0.794117647058823 0.205882352941176"; depth 102 ; unknown ; N/A GL192720.1 samtools variation 1135237 1135237 . . . alleles " A G"; frequencies " 0.495145631067961 0.504854368932039"; depth 103 ; unknown ; N/A GL192720.1 samtools variation 1136098 1136098 . . . alleles " A T"; frequencies " 0.457364341085271 0.542635658914729"; depth 129 ; unknown ; N/A GL192720.1 samtools variation 1136963 1136963 . . . alleles " T A"; frequencies " 0.771929824561403 0.228070175438596"; depth 57 ; unknown ; N/A GL192720.1 samtools variation 1138242 1138242 . . . alleles " A T"; frequencies " 0.521739130434783 0.478260869565217"; depth 46 ; unknown ; N/A GL192720.1 samtools variation 1139321 1139321 . . . alleles " T A"; frequencies " 0.309859154929577 0.690140845070423"; depth 71 ; unknown ; N/A GL192720.1 samtools variation 1142698 1142698 . . . alleles " A C"; frequencies " 0.72972972972973 0.27027027027027"; depth 74 ; unknown ; N/A GL192720.1 samtools variation 1142989 1142989 . . . alleles " A C"; frequencies " 0.320987654320988 0.679012345679012"; depth 81 ; unknown ; N/A GL192720.1 samtools variation 1143007 1143007 . . . alleles " T A"; frequencies " 0.25 0.75"; depth 60 ; known ; N/A GL192720.1 samtools variation 1144724 1144724 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192720.1 samtools variation 1145537 1145537 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192720.1 samtools variation 1146806 1146806 . . . alleles " A C"; frequencies " 0.294117647058824 0.705882352941177"; depth 51 ; known ; N/A GL192720.1 samtools variation 1148188 1148188 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL192720.1 samtools variation 1194882 1194882 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192720.1 samtools variation 1200124 1200124 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 44 ; known ; N/A GL192720.1 samtools variation 1207124 1207124 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192720.1 samtools variation 1208615 1208615 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192720.1 samtools variation 1216057 1216057 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192720.1 samtools variation 1235752 1235752 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; known ; N/A GL192720.1 samtools variation 1237089 1237089 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192720.1 samtools variation 1237098 1237098 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192721.1 samtools variation 1281554 1281554 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; non-synonymous GL192723.1 samtools variation 493793 493793 . . . alleles " A G"; frequencies " 0.580246913580247 0.419753086419753"; depth 81 ; unknown ; synonymous GL192723.1 samtools variation 529720 529720 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192723.1 samtools variation 632986 632986 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192723.1 samtools variation 640024 640024 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; unknown ; N/A GL192723.1 samtools variation 648214 648214 . . . alleles " A G"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; known ; N/A GL192723.1 samtools variation 648985 648985 . . . alleles " C T"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; unknown ; N/A GL192723.1 samtools variation 658599 658599 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 68 ; known ; N/A GL192723.1 samtools variation 659459 659459 . . . alleles " A G"; frequencies " 0.725490196078431 0.274509803921569"; depth 51 ; unknown ; N/A GL192723.1 samtools variation 660047 660047 . . . alleles " T A"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192723.1 samtools variation 676694 676694 . . . alleles " A T"; frequencies " 0.297297297297297 0.702702702702703"; depth 37 ; known ; N/A GL192723.1 samtools variation 683259 683259 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192723.1 samtools variation 687674 687674 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192723.1 samtools variation 693120 693120 . . . alleles " C T"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL192723.1 samtools variation 697060 697060 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL192723.1 samtools variation 699835 699835 . . . alleles " T G"; frequencies " 0.47244094488189 0.52755905511811"; depth 127 ; known ; N/A GL192723.1 samtools variation 700126 700126 . . . alleles " G T"; frequencies " 0.689723320158103 0.310276679841897"; depth 506 ; known ; N/A GL192723.1 samtools variation 712235 712235 . . . alleles " T C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192723.1 samtools variation 712897 712897 . . . alleles " C A"; frequencies " 0.63 0.37"; depth 200 ; unknown ; N/A GL192723.1 samtools variation 712910 712910 . . . alleles " A T"; frequencies " 0.739130434782609 0.260869565217391"; depth 207 ; known ; N/A GL192723.1 samtools variation 714031 714031 . . . alleles " C A"; frequencies " 0.574898785425101 0.421052631578947"; depth 247 ; unknown ; N/A GL192723.1 samtools variation 714839 714839 . . . alleles " G C"; frequencies " 0.591397849462366 0.408602150537634"; depth 186 ; known ; N/A GL192723.1 samtools variation 716363 716363 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192723.1 samtools variation 717175 717175 . . . alleles " G A"; frequencies " 0.716666666666667 0.283333333333333"; depth 60 ; unknown ; N/A GL192723.1 samtools variation 717425 717425 . . . alleles " A G"; frequencies " 0.74 0.26"; depth 50 ; unknown ; N/A GL192723.1 samtools variation 720586 720586 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 46 ; unknown ; N/A GL192723.1 samtools variation 727057 727057 . . . alleles " T C"; frequencies " 0.63 0.37"; depth 100 ; unknown ; N/A GL192723.1 samtools variation 727271 727271 . . . alleles " A C"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; unknown ; N/A GL192723.1 samtools variation 728062 728062 . . . alleles " A T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL192723.1 samtools variation 732141 732141 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 77 ; unknown ; N/A GL192723.1 samtools variation 739557 739557 . . . alleles " C T"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL192723.1 samtools variation 840177 840177 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 20 ; known ; synonymous GL192723.1 samtools variation 862298 862298 . . . alleles " C T"; frequencies " 0.71875 0.28125"; depth 32 ; known ; synonymous GL192723.1 samtools variation 862421 862421 . . . alleles " C T"; frequencies " 0.719298245614035 0.280701754385965"; depth 57 ; unknown ; synonymous GL192723.1 samtools variation 863536 863536 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192723.1 samtools variation 863548 863548 . . . alleles " T G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192724.1 samtools variation 176930 176930 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192724.1 samtools variation 466941 466941 . . . alleles " T C"; frequencies " 0.303448275862069 0.696551724137931"; depth 145 ; unknown ; N/A GL192724.1 samtools variation 468445 468445 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192724.1 samtools variation 468648 468648 . . . alleles " A T"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL192724.1 samtools variation 468733 468733 . . . alleles " T C"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; known ; N/A GL192724.1 samtools variation 469121 469121 . . . alleles " G C"; frequencies " 0.546511627906977 0.453488372093023"; depth 86 ; known ; N/A GL192724.1 samtools variation 469472 469472 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192724.1 samtools variation 469526 469526 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 34 ; known ; N/A GL192724.1 samtools variation 488018 488018 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192724.1 samtools variation 492423 492423 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192724.1 samtools variation 493047 493047 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 30 ; known ; N/A GL192724.1 samtools variation 493494 493494 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192724.1 samtools variation 493548 493548 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192724.1 samtools variation 494511 494511 . . . alleles " C T"; frequencies " 0.303030303030303 0.696969696969697"; depth 33 ; known ; N/A GL192724.1 samtools variation 496480 496480 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192724.1 samtools variation 497447 497447 . . . alleles " A G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL192724.1 samtools variation 498249 498249 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192724.1 samtools variation 502483 502483 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192724.1 samtools variation 503199 503199 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 25 ; known ; N/A GL192724.1 samtools variation 503228 503228 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192724.1 samtools variation 503551 503551 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192724.1 samtools variation 504954 504954 . . . alleles " T C"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; known ; N/A GL192724.1 samtools variation 505034 505034 . . . alleles " T A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192724.1 samtools variation 506147 506147 . . . alleles " C T"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; unknown ; N/A GL192724.1 samtools variation 506574 506574 . . . alleles " A G"; frequencies " 0.766666666666667 0.233333333333333"; depth 90 ; known ; N/A GL192724.1 samtools variation 506788 506788 . . . alleles " T A"; frequencies " 0.222222222222222 0.777777777777778"; depth 90 ; known ; N/A GL192724.1 samtools variation 507101 507101 . . . alleles " C G"; frequencies " 0.745901639344262 0.254098360655738"; depth 122 ; unknown ; N/A GL192724.1 samtools variation 507145 507145 . . . alleles " C T"; frequencies " 0.424657534246575 0.575342465753425"; depth 73 ; unknown ; N/A GL192724.1 samtools variation 513700 513700 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192724.1 samtools variation 523584 523584 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192724.1 samtools variation 543850 543850 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192724.1 samtools variation 577895 577895 . . . alleles " T A"; frequencies " 0.345029239766082 0.654970760233918"; depth 171 ; known ; N/A GL192724.1 samtools variation 580217 580217 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192724.1 samtools variation 583519 583519 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192724.1 samtools variation 596797 596797 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192724.1 samtools variation 641097 641097 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 51 ; unknown ; N/A GL192724.1 samtools variation 645549 645549 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192724.1 samtools variation 656280 656280 . . . alleles " G T"; frequencies " 0.754716981132076 0.245283018867925"; depth 53 ; unknown ; N/A GL192724.1 samtools variation 713923 713923 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL192724.1 samtools variation 785025 785025 . . . alleles " G T"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192724.1 samtools variation 796361 796361 . . . alleles " T G"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192724.1 samtools variation 814638 814638 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL192724.1 samtools variation 815411 815411 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192724.1 samtools variation 818202 818202 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192724.1 samtools variation 840092 840092 . . . alleles " G A"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192724.1 samtools variation 842928 842928 . . . alleles " A G"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; unknown ; N/A GL192724.1 samtools variation 845856 845856 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192724.1 samtools variation 899760 899760 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL192724.1 samtools variation 900104 900104 . . . alleles " C A"; frequencies " 0.787037037037037 0.212962962962963"; depth 108 ; unknown ; N/A GL192724.1 samtools variation 901209 901209 . . . alleles " G A"; frequencies " 0.382352941176471 0.617647058823529"; depth 34 ; known ; N/A GL192724.1 samtools variation 906324 906324 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192724.1 samtools variation 906327 906327 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192724.1 samtools variation 913138 913138 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192724.1 samtools variation 915447 915447 . . . alleles " A C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192724.1 samtools variation 924888 924888 . . . alleles " C G"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL192724.1 samtools variation 928282 928282 . . . alleles " T A"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; N/A GL192724.1 samtools variation 929975 929975 . . . alleles " C A"; frequencies " 0.681818181818182 0.318181818181818"; depth 66 ; known ; N/A GL192724.1 samtools variation 930258 930258 . . . alleles " T G"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL192724.1 samtools variation 930387 930387 . . . alleles " G A"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL192724.1 samtools variation 930437 930437 . . . alleles " C T"; frequencies " 0.358490566037736 0.641509433962264"; depth 53 ; known ; N/A GL192724.1 samtools variation 931039 931039 . . . alleles " C G"; frequencies " 0.761467889908257 0.238532110091743"; depth 109 ; unknown ; N/A GL192724.1 samtools variation 931334 931334 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192724.1 samtools variation 934962 934962 . . . alleles " G A"; frequencies " 0.67027027027027 0.32972972972973"; depth 185 ; unknown ; N/A GL192724.1 samtools variation 934983 934983 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 119 ; unknown ; N/A GL192724.1 samtools variation 935338 935338 . . . alleles " A C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192724.1 samtools variation 942986 942986 . . . alleles " T C"; frequencies " 0.724137931034483 0.275862068965517"; depth 116 ; known ; N/A GL192724.1 samtools variation 943014 943014 . . . alleles " A G"; frequencies " 0.757575757575758 0.242424242424242"; depth 99 ; unknown ; N/A GL192724.1 samtools variation 944006 944006 . . . alleles " C T"; frequencies " 0.762886597938144 0.237113402061856"; depth 97 ; unknown ; N/A GL192724.1 samtools variation 944252 944252 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 78 ; known ; N/A GL192724.1 samtools variation 964350 964350 . . . alleles " A C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192724.1 samtools variation 968377 968377 . . . alleles " G T"; frequencies " 0.692307692307692 0.307692307692308"; depth 117 ; unknown ; N/A GL192724.1 samtools variation 970757 970757 . . . alleles " G A"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; unknown ; N/A GL192724.1 samtools variation 970810 970810 . . . alleles " T C"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; N/A GL192724.1 samtools variation 971496 971496 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192724.1 samtools variation 973132 973132 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192724.1 samtools variation 974881 974881 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192724.1 samtools variation 1015338 1015338 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192724.1 samtools variation 1018495 1018495 . . . alleles " T C"; frequencies " 0.60233918128655 0.39766081871345"; depth 171 ; unknown ; N/A GL192724.1 samtools variation 1020168 1020168 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192724.1 samtools variation 1020415 1020415 . . . alleles " T G"; frequencies " 0.325581395348837 0.674418604651163"; depth 43 ; unknown ; N/A GL192724.1 samtools variation 1024134 1024134 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192724.1 samtools variation 1030271 1030271 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192724.1 samtools variation 1034488 1034488 . . . alleles " A C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192724.1 samtools variation 1034729 1034729 . . . alleles " A T"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL192724.1 samtools variation 1036033 1036033 . . . alleles " T C"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; known ; N/A GL192724.1 samtools variation 1036285 1036285 . . . alleles " G T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192724.1 samtools variation 1036330 1036330 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192724.1 samtools variation 1036458 1036458 . . . alleles " G A"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; unknown ; N/A GL192724.1 samtools variation 1036733 1036733 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192724.1 samtools variation 1038725 1038725 . . . alleles " G T"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; known ; N/A GL192724.1 samtools variation 1043907 1043907 . . . alleles " C T"; frequencies " 0.735294117647059 0.264705882352941"; depth 68 ; unknown ; N/A GL192724.1 samtools variation 1043923 1043923 . . . alleles " A G"; frequencies " 0.770114942528736 0.229885057471264"; depth 87 ; known ; N/A GL192724.1 samtools variation 1046550 1046550 . . . alleles " G C"; frequencies " 0.594594594594595 0.405405405405405"; depth 37 ; unknown ; N/A GL192724.1 samtools variation 1116891 1116891 . . . alleles " A G"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; unknown ; N/A GL192724.1 samtools variation 1178231 1178231 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; non-synonymous GL192724.1 samtools variation 1217063 1217063 . . . alleles " C T"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; unknown ; synonymous GL192724.1 samtools variation 1240078 1240078 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192724.1 samtools variation 1240107 1240107 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192724.1 samtools variation 1240135 1240135 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192724.1 samtools variation 1253258 1253258 . . . alleles " A T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192725.1 samtools variation 92389 92389 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192725.1 samtools variation 103976 103976 . . . alleles " T A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192725.1 samtools variation 103978 103978 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192725.1 samtools variation 149746 149746 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; unknown ; N/A GL192725.1 samtools variation 151353 151353 . . . alleles " C T"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL192725.1 samtools variation 151782 151782 . . . alleles " T C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192725.1 samtools variation 169472 169472 . . . alleles " G T"; frequencies " 0.682795698924731 0.317204301075269"; depth 744 ; unknown ; non-synonymous GL192725.1 samtools variation 172489 172489 . . . alleles " A C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192725.1 samtools variation 172722 172722 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192725.1 samtools variation 173028 173028 . . . alleles " C A"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; unknown ; N/A GL192725.1 samtools variation 331862 331862 . . . alleles " C T"; frequencies " 0.535211267605634 0.464788732394366"; depth 213 ; unknown ; synonymous GL192726.1 samtools variation 1175613 1175613 . . . alleles " G C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192726.1 samtools variation 1185333 1185333 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192726.1 samtools variation 1385935 1385935 . . . alleles " A T"; frequencies " 0.752688172043011 0.247311827956989"; depth 93 ; known ; non-synonymous GL192727.1 samtools variation 1465741 1465741 . . . alleles " C A"; frequencies " 0.271186440677966 0.728813559322034"; depth 59 ; known ; N/A GL192727.1 samtools variation 1466996 1466996 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL192727.1 samtools variation 1505958 1505958 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 270 ; known ; synonymous GL192728.1 samtools variation 736143 736143 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192728.1 samtools variation 736691 736691 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192728.1 samtools variation 739568 739568 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192728.1 samtools variation 751699 751699 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; synonymous GL192728.1 samtools variation 822219 822219 . . . alleles " T C"; frequencies " 0.649509803921569 0.350490196078431"; depth 408 ; known ; N/A GL192728.1 samtools variation 824007 824007 . . . alleles " A G"; frequencies " 0.758893280632411 0.241106719367589"; depth 253 ; unknown ; N/A GL192728.1 samtools variation 824022 824022 . . . alleles " A G"; frequencies " 0.79296875 0.20703125"; depth 256 ; unknown ; N/A GL192728.1 samtools variation 824926 824926 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 78 ; unknown ; N/A GL192728.1 samtools variation 824966 824966 . . . alleles " G C"; frequencies " 0.793650793650794 0.206349206349206"; depth 63 ; unknown ; N/A GL192728.1 samtools variation 825428 825428 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 63 ; unknown ; N/A GL192728.1 samtools variation 829040 829040 . . . alleles " A G"; frequencies " 0.706983441324694 0.292296616270698"; depth 1389 ; unknown ; synonymous GL192728.1 samtools variation 831092 831092 . . . alleles " T C"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192728.1 samtools variation 834507 834507 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192728.1 samtools variation 850206 850206 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192728.1 samtools variation 851078 851078 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192728.1 samtools variation 851219 851219 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192728.1 samtools variation 851256 851256 . . . alleles " A T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192728.1 samtools variation 851568 851568 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192728.1 samtools variation 852535 852535 . . . alleles " A G"; frequencies " 0.456521739130435 0.543478260869565"; depth 46 ; unknown ; N/A GL192728.1 samtools variation 852576 852576 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 40 ; unknown ; N/A GL192728.1 samtools variation 1122595 1122595 . . . alleles " T C"; frequencies " 0.681818181818182 0.318181818181818"; depth 44 ; unknown ; N/A GL192728.1 samtools variation 1122733 1122733 . . . alleles " G T"; frequencies " 0.661538461538462 0.338461538461538"; depth 130 ; unknown ; N/A GL192728.1 samtools variation 1122951 1122951 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 80 ; unknown ; N/A GL192728.1 samtools variation 1122976 1122976 . . . alleles " A T"; frequencies " 0.728813559322034 0.271186440677966"; depth 59 ; unknown ; N/A GL192728.1 samtools variation 1123234 1123234 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 104 ; unknown ; N/A GL192728.1 samtools variation 1123426 1123426 . . . alleles " A C"; frequencies " 0.760869565217391 0.239130434782609"; depth 92 ; unknown ; N/A GL192728.1 samtools variation 1123689 1123689 . . . alleles " A G"; frequencies " 0.753846153846154 0.238461538461538"; depth 130 ; unknown ; N/A GL192728.1 samtools variation 1123949 1123949 . . . alleles " C A"; frequencies " 0.658385093167702 0.341614906832298"; depth 161 ; unknown ; N/A GL192728.1 samtools variation 1128395 1128395 . . . alleles " A G"; frequencies " 0.603448275862069 0.396551724137931"; depth 58 ; unknown ; synonymous GL192728.1 samtools variation 1135703 1135703 . . . alleles " T C"; frequencies " 0.633333333333333 0.366666666666667"; depth 60 ; unknown ; synonymous GL192728.1 samtools variation 1136055 1136055 . . . alleles " C T"; frequencies " 0.731958762886598 0.268041237113402"; depth 97 ; unknown ; non-synonymous GL192728.1 samtools variation 1217642 1217642 . . . alleles " C A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192728.1 samtools variation 1218071 1218071 . . . alleles " A G"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; unknown ; N/A GL192728.1 samtools variation 1228592 1228592 . . . alleles " G T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192728.1 samtools variation 1228593 1228593 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192728.1 samtools variation 1228886 1228886 . . . alleles " A G"; frequencies " 0.432432432432432 0.567567567567568"; depth 37 ; known ; N/A GL192728.1 samtools variation 1229212 1229212 . . . alleles " C T"; frequencies " 0.34375 0.65625"; depth 32 ; known ; N/A GL192728.1 samtools variation 1230815 1230815 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192728.1 samtools variation 1233819 1233819 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; N/A GL192728.1 samtools variation 1234146 1234146 . . . alleles " C A"; frequencies " 0.211267605633803 0.788732394366197"; depth 71 ; unknown ; N/A GL192728.1 samtools variation 1234251 1234251 . . . alleles " G A"; frequencies " 0.786666666666667 0.213333333333333"; depth 75 ; unknown ; N/A GL192728.1 samtools variation 1238643 1238643 . . . alleles " G A"; frequencies " 0.776162790697674 0.223837209302326"; depth 344 ; unknown ; N/A GL192728.1 samtools variation 1238861 1238861 . . . alleles " T C"; frequencies " 0.290598290598291 0.709401709401709"; depth 117 ; known ; N/A GL192728.1 samtools variation 1241497 1241497 . . . alleles " G C"; frequencies " 0.32 0.68"; depth 50 ; known ; N/A GL192728.1 samtools variation 1242560 1242560 . . . alleles " T C"; frequencies " 0.245614035087719 0.754385964912281"; depth 57 ; known ; N/A GL192728.1 samtools variation 1242561 1242561 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 58 ; unknown ; N/A GL192728.1 samtools variation 1243197 1243197 . . . alleles " G A"; frequencies " 0.627906976744186 0.372093023255814"; depth 86 ; unknown ; N/A GL192728.1 samtools variation 1243522 1243522 . . . alleles " T C"; frequencies " 0.648148148148148 0.351851851851852"; depth 54 ; unknown ; N/A GL192728.1 samtools variation 1244456 1244456 . . . alleles " C T"; frequencies " 0.700248756218905 0.299751243781095"; depth 804 ; known ; synonymous GL192728.1 samtools variation 1244883 1244883 . . . alleles " G C"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL192728.1 samtools variation 1246653 1246653 . . . alleles " A G"; frequencies " 0.553191489361702 0.446808510638298"; depth 47 ; known ; N/A GL192728.1 samtools variation 1246859 1246859 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192728.1 samtools variation 1247072 1247072 . . . alleles " A G"; frequencies " 0.657657657657658 0.342342342342342"; depth 111 ; unknown ; N/A GL192728.1 samtools variation 1247075 1247075 . . . alleles " G C"; frequencies " 0.654545454545455 0.345454545454545"; depth 110 ; unknown ; N/A GL192728.1 samtools variation 1247240 1247240 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192728.1 samtools variation 1247498 1247498 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192728.1 samtools variation 1248165 1248165 . . . alleles " A G"; frequencies " 0.48 0.52"; depth 25 ; known ; N/A GL192728.1 samtools variation 1248368 1248368 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192728.1 samtools variation 1248475 1248475 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192728.1 samtools variation 1248976 1248976 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; known ; N/A GL192728.1 samtools variation 1249064 1249064 . . . alleles " G C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL192728.1 samtools variation 1250215 1250215 . . . alleles " A C"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL192728.1 samtools variation 1251927 1251927 . . . alleles " T C"; frequencies " 0.405511811023622 0.594488188976378"; depth 254 ; known ; N/A GL192728.1 samtools variation 1258139 1258139 . . . alleles " G C"; frequencies " 0.633663366336634 0.35973597359736"; depth 303 ; unknown ; N/A GL192728.1 samtools variation 1258169 1258169 . . . alleles " T C"; frequencies " 0.776729559748428 0.223270440251572"; depth 318 ; known ; N/A GL192728.1 samtools variation 1258732 1258732 . . . alleles " G A"; frequencies " 0.640909090909091 0.359090909090909"; depth 220 ; unknown ; N/A GL192728.1 samtools variation 1258865 1258865 . . . alleles " G A"; frequencies " 0.717391304347826 0.282608695652174"; depth 368 ; unknown ; N/A GL192728.1 samtools variation 1261348 1261348 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 63 ; known ; N/A GL192728.1 samtools variation 1261446 1261446 . . . alleles " A G"; frequencies " 0.390804597701149 0.609195402298851"; depth 87 ; known ; N/A GL192728.1 samtools variation 1261712 1261712 . . . alleles " G A"; frequencies " 0.655913978494624 0.344086021505376"; depth 93 ; unknown ; N/A GL192728.1 samtools variation 1264541 1264541 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; synonymous GL192728.1 samtools variation 1266912 1266912 . . . alleles " A C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192728.1 samtools variation 1319738 1319738 . . . alleles " A G"; frequencies " 0.480769230769231 0.519230769230769"; depth 52 ; known ; N/A GL192728.1 samtools variation 1322500 1322500 . . . alleles " A G"; frequencies " 0.569620253164557 0.430379746835443"; depth 79 ; known ; synonymous GL192728.1 samtools variation 1352635 1352635 . . . alleles " G T"; frequencies " 0.71264367816092 0.28735632183908"; depth 87 ; known ; N/A GL192729.1 samtools variation 639965 639965 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 15 ; known ; synonymous GL192729.1 samtools variation 917367 917367 . . . alleles " T C"; frequencies " 0.302631578947368 0.697368421052632"; depth 152 ; known ; N/A GL192729.1 samtools variation 918908 918908 . . . alleles " T C"; frequencies " 0.696969696969697 0.303030303030303"; depth 66 ; unknown ; N/A GL192729.1 samtools variation 919781 919781 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192729.1 samtools variation 919820 919820 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192729.1 samtools variation 945691 945691 . . . alleles " T C"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; unknown ; synonymous GL192729.1 samtools variation 1050706 1050706 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; known ; synonymous GL192729.1 samtools variation 1050765 1050765 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192729.1 samtools variation 1050878 1050878 . . . alleles " G T"; frequencies " 0.32 0.68"; depth 75 ; known ; N/A GL192729.1 samtools variation 1054076 1054076 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192729.1 samtools variation 1054359 1054359 . . . alleles " A T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL192730.1 samtools variation 514822 514822 . . . alleles " G C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192730.1 samtools variation 572233 572233 . . . alleles " A G"; frequencies " 0.680672268907563 0.319327731092437"; depth 119 ; unknown ; N/A GL192730.1 samtools variation 573890 573890 . . . alleles " T C"; frequencies " 0.741525423728814 0.258474576271186"; depth 236 ; unknown ; N/A GL192730.1 samtools variation 574126 574126 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL192730.1 samtools variation 575529 575529 . . . alleles " A G"; frequencies " 0.76271186440678 0.23728813559322"; depth 59 ; unknown ; N/A GL192730.1 samtools variation 601891 601891 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192730.1 samtools variation 602144 602144 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192730.1 samtools variation 604218 604218 . . . alleles " C A"; frequencies " 0.706896551724138 0.293103448275862"; depth 58 ; unknown ; N/A GL192730.1 samtools variation 623059 623059 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192730.1 samtools variation 640016 640016 . . . alleles " C T"; frequencies " 0.744 0.256"; depth 125 ; unknown ; N/A GL192730.1 samtools variation 648277 648277 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192730.1 samtools variation 652470 652470 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192730.1 samtools variation 1011541 1011541 . . . alleles " G A"; frequencies " 0.248366013071895 0.751633986928105"; depth 306 ; known ; N/A GL192730.1 samtools variation 1011771 1011771 . . . alleles " G C"; frequencies " 0.489675516224189 0.510324483775811"; depth 339 ; unknown ; N/A GL192730.1 samtools variation 1014139 1014139 . . . alleles " A G"; frequencies " 0.521428571428571 0.478571428571429"; depth 140 ; unknown ; N/A GL192730.1 samtools variation 1054163 1054163 . . . alleles " T C"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL192730.1 samtools variation 1068507 1068507 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; unknown ; N/A GL192730.1 samtools variation 1104160 1104160 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; known ; N/A GL192730.1 samtools variation 1128371 1128371 . . . alleles " G T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192730.1 samtools variation 1167904 1167904 . . . alleles " C T"; frequencies " 0.299270072992701 0.700729927007299"; depth 137 ; known ; non-synonymous GL192730.1 samtools variation 1201628 1201628 . . . alleles " A T"; frequencies " 0.55 0.45"; depth 200 ; known ; synonymous GL192730.1 samtools variation 1204722 1204722 . . . alleles " G A"; frequencies " 0.480582524271845 0.514563106796116"; depth 206 ; known ; non-synonymous GL192730.1 samtools variation 1211232 1211232 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192730.1 samtools variation 1229924 1229924 . . . alleles " G C"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192730.1 samtools variation 1230072 1230072 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192730.1 samtools variation 1260987 1260987 . . . alleles " G T"; frequencies " 0.345454545454545 0.654545454545455"; depth 55 ; unknown ; N/A GL192730.1 samtools variation 1283718 1283718 . . . alleles " T G"; frequencies " 0.380530973451327 0.619469026548673"; depth 226 ; known ; non-synonymous GL192730.1 samtools variation 1287088 1287088 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192730.1 samtools variation 1348290 1348290 . . . alleles " C G"; frequencies " 0.442622950819672 0.557377049180328"; depth 305 ; known ; non-synonymous GL192730.1 samtools variation 1352818 1352818 . . . alleles " A G"; frequencies " 0.450746268656716 0.549253731343284"; depth 335 ; known ; non-synonymous GL192731.1 samtools variation 207884 207884 . . . alleles " G A"; frequencies " 0.491150442477876 0.508849557522124"; depth 226 ; unknown ; N/A GL192731.1 samtools variation 208793 208793 . . . alleles " C T"; frequencies " 0.651851851851852 0.348148148148148"; depth 405 ; unknown ; non-synonymous GL192731.1 samtools variation 643026 643026 . . . alleles " T C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; synonymous GL192731.1 samtools variation 662288 662288 . . . alleles " C A"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL192731.1 samtools variation 738894 738894 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192731.1 samtools variation 743687 743687 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192731.1 samtools variation 743803 743803 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192731.1 samtools variation 752836 752836 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL192731.1 samtools variation 757089 757089 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; known ; N/A GL192731.1 samtools variation 760331 760331 . . . alleles " C T"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192731.1 samtools variation 765890 765890 . . . alleles " A C"; frequencies " 0.645569620253165 0.354430379746835"; depth 79 ; unknown ; N/A GL192731.1 samtools variation 848118 848118 . . . alleles " G T"; frequencies " 0.425925925925926 0.574074074074074"; depth 162 ; unknown ; N/A GL192731.1 samtools variation 1045141 1045141 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192731.1 samtools variation 1062526 1062526 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192731.1 samtools variation 1067390 1067390 . . . alleles " T G"; frequencies " 0.519230769230769 0.480769230769231"; depth 52 ; known ; N/A GL192731.1 samtools variation 1091597 1091597 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192731.1 samtools variation 1095450 1095450 . . . alleles " G A"; frequencies " 0.61671469740634 0.38328530259366"; depth 347 ; unknown ; N/A GL192731.1 samtools variation 1098501 1098501 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192731.1 samtools variation 1099410 1099410 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192731.1 samtools variation 1281987 1281987 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192731.1 samtools variation 1455935 1455935 . . . alleles " C T"; frequencies " 0.705128205128205 0.294871794871795"; depth 78 ; unknown ; N/A GL192731.1 samtools variation 1456535 1456535 . . . alleles " C T"; frequencies " 0.737704918032787 0.262295081967213"; depth 61 ; unknown ; N/A GL192732.1 samtools variation 580322 580322 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192732.1 samtools variation 838341 838341 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192732.1 samtools variation 840836 840836 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192732.1 samtools variation 841074 841074 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192732.1 samtools variation 842595 842595 . . . alleles " G A"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL192732.1 samtools variation 847332 847332 . . . alleles " C G"; frequencies " 0.71356783919598 0.28643216080402"; depth 199 ; known ; N/A GL192732.1 samtools variation 926734 926734 . . . alleles " C T"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL192732.1 samtools variation 927341 927341 . . . alleles " A G"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; unknown ; N/A GL192732.1 samtools variation 928212 928212 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192732.1 samtools variation 928277 928277 . . . alleles " C T"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192732.1 samtools variation 932312 932312 . . . alleles " T C"; frequencies " 0.640776699029126 0.359223300970874"; depth 103 ; unknown ; synonymous GL192732.1 samtools variation 957069 957069 . . . alleles " C T"; frequencies " 0.486842105263158 0.513157894736842"; depth 76 ; known ; non-synonymous GL192732.1 samtools variation 1423463 1423463 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192733.1 samtools variation 134 134 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192733.1 samtools variation 705 705 . . . alleles " G A"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL192733.1 samtools variation 8896 8896 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192733.1 samtools variation 12588 12588 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192733.1 samtools variation 21688 21688 . . . alleles " T C"; frequencies " 0.339622641509434 0.660377358490566"; depth 106 ; unknown ; synonymous GL192733.1 samtools variation 22681 22681 . . . alleles " G C"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; unknown ; N/A GL192733.1 samtools variation 49773 49773 . . . alleles " T G"; frequencies " 0.708860759493671 0.291139240506329"; depth 79 ; known ; N/A GL192733.1 samtools variation 54020 54020 . . . alleles " A G"; frequencies " 0.423728813559322 0.576271186440678"; depth 59 ; known ; N/A GL192733.1 samtools variation 58659 58659 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192733.1 samtools variation 126926 126926 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL192733.1 samtools variation 128229 128229 . . . alleles " C T"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; known ; N/A GL192733.1 samtools variation 128726 128726 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192733.1 samtools variation 153168 153168 . . . alleles " A G"; frequencies " 0.577777777777778 0.422222222222222"; depth 45 ; known ; N/A GL192733.1 samtools variation 153655 153655 . . . alleles " A C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192733.1 samtools variation 157290 157290 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192733.1 samtools variation 176156 176156 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192733.1 samtools variation 219638 219638 . . . alleles " G A"; frequencies " 0.574468085106383 0.425531914893617"; depth 47 ; unknown ; non-synonymous GL192733.1 samtools variation 219701 219701 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; non-synonymous GL192733.1 samtools variation 224369 224369 . . . alleles " G A"; frequencies " 0.662337662337662 0.337662337662338"; depth 77 ; unknown ; synonymous GL192733.1 samtools variation 280042 280042 . . . alleles " C T"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192733.1 samtools variation 306766 306766 . . . alleles " C T"; frequencies " 0.698924731182796 0.301075268817204"; depth 279 ; known ; N/A GL192733.1 samtools variation 315162 315162 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 34 ; unknown ; N/A GL192733.1 samtools variation 317597 317597 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 51 ; unknown ; synonymous GL192733.1 samtools variation 318748 318748 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; non-synonymous GL192733.1 samtools variation 320624 320624 . . . alleles " C T"; frequencies " 0.361842105263158 0.638157894736842"; depth 152 ; unknown ; N/A GL192733.1 samtools variation 412674 412674 . . . alleles " C G"; frequencies " 0.46875 0.53125"; depth 32 ; known ; N/A GL192733.1 samtools variation 412740 412740 . . . alleles " G A"; frequencies " 0.660714285714286 0.339285714285714"; depth 56 ; unknown ; N/A GL192733.1 samtools variation 435450 435450 . . . alleles " C T"; frequencies " 0.515151515151515 0.484848484848485"; depth 66 ; unknown ; N/A GL192733.1 samtools variation 470262 470262 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192733.1 samtools variation 482023 482023 . . . alleles " A G"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL192733.1 samtools variation 492516 492516 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 69 ; unknown ; N/A GL192733.1 samtools variation 493021 493021 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL192733.1 samtools variation 493866 493866 . . . alleles " A T"; frequencies " 0.78169014084507 0.21830985915493"; depth 142 ; unknown ; N/A GL192733.1 samtools variation 495249 495249 . . . alleles " T C"; frequencies " 0.488888888888889 0.511111111111111"; depth 45 ; known ; N/A GL192733.1 samtools variation 497076 497076 . . . alleles " C G"; frequencies " 0.466666666666667 0.533333333333333"; depth 60 ; unknown ; N/A GL192733.1 samtools variation 505957 505957 . . . alleles " A G"; frequencies " 0.756756756756757 0.243243243243243"; depth 111 ; unknown ; N/A GL192733.1 samtools variation 520740 520740 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; non-synonymous GL192733.1 samtools variation 534888 534888 . . . alleles " C T"; frequencies " 0.308333333333333 0.691666666666667"; depth 120 ; unknown ; synonymous GL192733.1 samtools variation 588789 588789 . . . alleles " G A"; frequencies " 0.212121212121212 0.787878787878788"; depth 33 ; unknown ; synonymous GL192733.1 samtools variation 625785 625785 . . . alleles " C T"; frequencies " 0.616438356164384 0.383561643835616"; depth 73 ; unknown ; N/A GL192733.1 samtools variation 686143 686143 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192733.1 samtools variation 687823 687823 . . . alleles " G C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192733.1 samtools variation 689135 689135 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192733.1 samtools variation 1018557 1018557 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192733.1 samtools variation 1031337 1031337 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192733.1 samtools variation 1050684 1050684 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL192733.1 samtools variation 1050707 1050707 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192733.1 samtools variation 1060426 1060426 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192733.1 samtools variation 1060430 1060430 . . . alleles " G C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192733.1 samtools variation 1061404 1061404 . . . alleles " T C"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; known ; N/A GL192733.1 samtools variation 1061686 1061686 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192733.1 samtools variation 1062247 1062247 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192733.1 samtools variation 1067425 1067425 . . . alleles " A G"; frequencies " 0.660714285714286 0.339285714285714"; depth 56 ; unknown ; N/A GL192733.1 samtools variation 1082950 1082950 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192733.1 samtools variation 1083334 1083334 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192733.1 samtools variation 1116208 1116208 . . . alleles " G A"; frequencies " 0.434782608695652 0.565217391304348"; depth 46 ; unknown ; non-synonymous GL192733.1 samtools variation 1116232 1116232 . . . alleles " G T"; frequencies " 0.404255319148936 0.595744680851064"; depth 47 ; unknown ; non-synonymous GL192733.1 samtools variation 1117418 1117418 . . . alleles " A G"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; synonymous GL192733.1 samtools variation 1119403 1119403 . . . alleles " A G"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL192733.1 samtools variation 1120793 1120793 . . . alleles " C A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; non-synonymous GL192733.1 samtools variation 1122294 1122294 . . . alleles " A C"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL192733.1 samtools variation 1122325 1122325 . . . alleles " G T"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; unknown ; N/A GL192733.1 samtools variation 1123092 1123092 . . . alleles " C G"; frequencies " 0.521739130434783 0.478260869565217"; depth 46 ; unknown ; N/A GL192733.1 samtools variation 1123345 1123345 . . . alleles " G A"; frequencies " 0.779735682819383 0.220264317180617"; depth 227 ; unknown ; N/A GL192733.1 samtools variation 1125084 1125084 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192733.1 samtools variation 1125228 1125228 . . . alleles " A G"; frequencies " 0.480582524271845 0.519417475728155"; depth 412 ; known ; synonymous GL192733.1 samtools variation 1127991 1127991 . . . alleles " A G"; frequencies " 0.270114942528736 0.729885057471264"; depth 174 ; unknown ; synonymous GL192733.1 samtools variation 1128377 1128377 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192733.1 samtools variation 1130587 1130587 . . . alleles " A G"; frequencies " 0.58 0.42"; depth 50 ; unknown ; N/A GL192733.1 samtools variation 1130894 1130894 . . . alleles " A G"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL192733.1 samtools variation 1152002 1152002 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; non-synonymous GL192733.1 samtools variation 1152240 1152240 . . . alleles " G C"; frequencies " 0.609756097560976 0.390243902439024"; depth 41 ; unknown ; N/A GL192733.1 samtools variation 1162260 1162260 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; synonymous GL192733.1 samtools variation 1179287 1179287 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; synonymous GL192733.1 samtools variation 1199384 1199384 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192733.1 samtools variation 1199465 1199465 . . . alleles " T C"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192733.1 samtools variation 1201690 1201690 . . . alleles " G A"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; unknown ; N/A GL192733.1 samtools variation 1304539 1304539 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 44 ; unknown ; N/A GL192733.1 samtools variation 1355451 1355451 . . . alleles " G A"; frequencies " 0.706896551724138 0.293103448275862"; depth 58 ; unknown ; N/A GL192733.1 samtools variation 1371659 1371659 . . . alleles " C T"; frequencies " 0.630769230769231 0.369230769230769"; depth 65 ; unknown ; synonymous GL192733.1 samtools variation 1373520 1373520 . . . alleles " G C"; frequencies " 0.364583333333333 0.635416666666667"; depth 288 ; known ; N/A GL192733.1 samtools variation 1390244 1390244 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192733.1 samtools variation 1397975 1397975 . . . alleles " T A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192733.1 samtools variation 1398375 1398375 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192733.1 samtools variation 1400392 1400392 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192733.1 samtools variation 1402802 1402802 . . . alleles " C G"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192733.1 samtools variation 1403114 1403114 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192733.1 samtools variation 1403520 1403520 . . . alleles " A G"; frequencies " 0.671328671328671 0.328671328671329"; depth 143 ; unknown ; synonymous GL192733.1 samtools variation 1404385 1404385 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL192733.1 samtools variation 1407848 1407848 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192733.1 samtools variation 1421540 1421540 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192733.1 samtools variation 1514377 1514377 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192733.1 samtools variation 1514671 1514671 . . . alleles " A G"; frequencies " 0.520668425681618 0.479331574318382"; depth 1137 ; known ; N/A GL192733.1 samtools variation 1515005 1515005 . . . alleles " G A"; frequencies " 0.543478260869565 0.455242966751918"; depth 782 ; known ; N/A GL192733.1 samtools variation 1515140 1515140 . . . alleles " G A"; frequencies " 0.528222013170273 0.471777986829727"; depth 2126 ; known ; N/A GL192733.1 samtools variation 1515878 1515878 . . . alleles " T C"; frequencies " 0.320754716981132 0.679245283018868"; depth 53 ; unknown ; N/A GL192733.1 samtools variation 1515880 1515880 . . . alleles " A G"; frequencies " 0.358490566037736 0.641509433962264"; depth 53 ; unknown ; N/A GL192733.1 samtools variation 1518989 1518989 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192733.1 samtools variation 1529466 1529466 . . . alleles " T A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192733.1 samtools variation 1529474 1529474 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192733.1 samtools variation 1529631 1529631 . . . alleles " T A"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; unknown ; N/A GL192733.1 samtools variation 1529745 1529745 . . . alleles " C G"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; known ; N/A GL192733.1 samtools variation 1529779 1529779 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; known ; N/A GL192733.1 samtools variation 1530866 1530866 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192733.1 samtools variation 1531264 1531264 . . . alleles " G A"; frequencies " 0.782258064516129 0.217741935483871"; depth 124 ; known ; synonymous GL192736.1 samtools variation 218015 218015 . . . alleles " G A"; frequencies " 0.649746192893401 0.350253807106599"; depth 394 ; known ; synonymous GL192736.1 samtools variation 221268 221268 . . . alleles " G A"; frequencies " 0.377777777777778 0.622222222222222"; depth 45 ; known ; N/A GL192736.1 samtools variation 221751 221751 . . . alleles " A G"; frequencies " 0.702127659574468 0.297872340425532"; depth 47 ; known ; N/A GL192736.1 samtools variation 241125 241125 . . . alleles " T A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192736.1 samtools variation 241181 241181 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192736.1 samtools variation 241421 241421 . . . alleles " T A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192736.1 samtools variation 242552 242552 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192736.1 samtools variation 375668 375668 . . . alleles " C T"; frequencies " 0.243243243243243 0.756756756756757"; depth 37 ; known ; N/A GL192736.1 samtools variation 376204 376204 . . . alleles " G C"; frequencies " 0.255813953488372 0.744186046511628"; depth 43 ; unknown ; N/A GL192736.1 samtools variation 377691 377691 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192736.1 samtools variation 381818 381818 . . . alleles " C A"; frequencies " 0.200803212851406 0.799196787148594"; depth 1245 ; known ; N/A GL192736.1 samtools variation 393290 393290 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192736.1 samtools variation 404766 404766 . . . alleles " A T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192736.1 samtools variation 411428 411428 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192736.1 samtools variation 441928 441928 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192736.1 samtools variation 822622 822622 . . . alleles " T C"; frequencies " 0.781818181818182 0.218181818181818"; depth 55 ; unknown ; N/A GL192738.1 samtools variation 797889 797889 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192738.1 samtools variation 1033051 1033051 . . . alleles " C G"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL192738.1 samtools variation 1063408 1063408 . . . alleles " C T"; frequencies " 0.243243243243243 0.756756756756757"; depth 74 ; known ; synonymous GL192738.1 samtools variation 1184424 1184424 . . . alleles " C T"; frequencies " 0.423076923076923 0.576923076923077"; depth 78 ; unknown ; N/A GL192738.1 samtools variation 1203508 1203508 . . . alleles " G C"; frequencies " 0.653846153846154 0.346153846153846"; depth 78 ; unknown ; N/A GL192738.1 samtools variation 1315136 1315136 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192738.1 samtools variation 1494821 1494821 . . . alleles " G T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192738.1 samtools variation 1494866 1494866 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192738.1 samtools variation 1497527 1497527 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192738.1 samtools variation 1503741 1503741 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192738.1 samtools variation 1504539 1504539 . . . alleles " G C"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; known ; N/A GL192738.1 samtools variation 1507742 1507742 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192738.1 samtools variation 1508705 1508705 . . . alleles " C G"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; known ; N/A GL192738.1 samtools variation 1510277 1510277 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192738.1 samtools variation 1510296 1510296 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192739.1 samtools variation 164560 164560 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192739.1 samtools variation 1466061 1466061 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192740.1 samtools variation 151335 151335 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 33 ; unknown ; N/A GL192740.1 samtools variation 151858 151858 . . . alleles " C T"; frequencies " 0.436619718309859 0.563380281690141"; depth 71 ; unknown ; N/A GL192740.1 samtools variation 151861 151861 . . . alleles " C A"; frequencies " 0.534883720930233 0.465116279069767"; depth 86 ; unknown ; N/A GL192740.1 samtools variation 152033 152033 . . . alleles " C T"; frequencies " 0.367924528301887 0.632075471698113"; depth 106 ; unknown ; N/A GL192740.1 samtools variation 152400 152400 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 54 ; unknown ; N/A GL192740.1 samtools variation 153468 153468 . . . alleles " C T"; frequencies " 0.574324324324324 0.425675675675676"; depth 148 ; unknown ; synonymous GL192740.1 samtools variation 228869 228869 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192740.1 samtools variation 228894 228894 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; synonymous GL192740.1 samtools variation 230411 230411 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192740.1 samtools variation 276561 276561 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192740.1 samtools variation 276607 276607 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192740.1 samtools variation 276719 276719 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192740.1 samtools variation 339833 339833 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192740.1 samtools variation 371822 371822 . . . alleles " T C"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; synonymous GL192740.1 samtools variation 371848 371848 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; non-synonymous GL192740.1 samtools variation 375464 375464 . . . alleles " A G"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; non-synonymous GL192740.1 samtools variation 377827 377827 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; non-synonymous GL192740.1 samtools variation 385027 385027 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 35 ; unknown ; non-synonymous GL192740.1 samtools variation 409626 409626 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; unknown ; synonymous GL192740.1 samtools variation 409663 409663 . . . alleles " G A"; frequencies " 0.644444444444444 0.355555555555556"; depth 45 ; unknown ; non-synonymous GL192740.1 samtools variation 456082 456082 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; synonymous GL192740.1 samtools variation 481395 481395 . . . alleles " T G"; frequencies " 0.225 0.775"; depth 40 ; unknown ; synonymous GL192740.1 samtools variation 487369 487369 . . . alleles " A G"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; non-synonymous GL192740.1 samtools variation 489689 489689 . . . alleles " G A"; frequencies " 0.204545454545455 0.795454545454545"; depth 88 ; unknown ; synonymous GL192740.1 samtools variation 499917 499917 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 76 ; unknown ; synonymous GL192740.1 samtools variation 501920 501920 . . . alleles " C T"; frequencies " 0.433333333333333 0.566666666666667"; depth 90 ; unknown ; synonymous GL192740.1 samtools variation 505975 505975 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192740.1 samtools variation 515290 515290 . . . alleles " T C"; frequencies " 0.396946564885496 0.603053435114504"; depth 131 ; unknown ; synonymous GL192740.1 samtools variation 523037 523037 . . . alleles " G A"; frequencies " 0.672727272727273 0.327272727272727"; depth 165 ; unknown ; synonymous GL192740.1 samtools variation 524974 524974 . . . alleles " G A"; frequencies " 0.263888888888889 0.736111111111111"; depth 72 ; unknown ; synonymous GL192740.1 samtools variation 530831 530831 . . . alleles " A C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192740.1 samtools variation 543026 543026 . . . alleles " C T"; frequencies " 0.639175257731959 0.360824742268041"; depth 97 ; unknown ; non-synonymous GL192740.1 samtools variation 559291 559291 . . . alleles " A G"; frequencies " 0.268292682926829 0.731707317073171"; depth 123 ; known ; non-synonymous GL192740.1 samtools variation 559974 559974 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL192740.1 samtools variation 566352 566352 . . . alleles " C T"; frequencies " 0.226415094339623 0.773584905660377"; depth 53 ; known ; synonymous GL192740.1 samtools variation 577347 577347 . . . alleles " C T"; frequencies " 0.673575129533679 0.326424870466321"; depth 193 ; unknown ; synonymous GL192740.1 samtools variation 594946 594946 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192740.1 samtools variation 641866 641866 . . . alleles " A G"; frequencies " 0.607843137254902 0.392156862745098"; depth 51 ; unknown ; N/A GL192740.1 samtools variation 661911 661911 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192740.1 samtools variation 1217904 1217904 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192740.1 samtools variation 1219240 1219240 . . . alleles " C A"; frequencies " 0.675675675675676 0.324324324324324"; depth 74 ; unknown ; non-synonymous GL192740.1 samtools variation 1219298 1219298 . . . alleles " G A"; frequencies " 0.604166666666667 0.395833333333333"; depth 48 ; unknown ; synonymous GL192740.1 samtools variation 1228409 1228409 . . . alleles " A T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; synonymous GL192740.1 samtools variation 1231210 1231210 . . . alleles " A G"; frequencies " 0.568 0.432"; depth 125 ; unknown ; N/A GL192740.1 samtools variation 1231254 1231254 . . . alleles " G A"; frequencies " 0.716216216216216 0.283783783783784"; depth 74 ; unknown ; N/A GL192740.1 samtools variation 1251906 1251906 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192740.1 samtools variation 1265469 1265469 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 54 ; known ; N/A GL192740.1 samtools variation 1312919 1312919 . . . alleles " T C"; frequencies " 0.31 0.69"; depth 100 ; unknown ; N/A GL192740.1 samtools variation 1313707 1313707 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; synonymous GL192740.1 samtools variation 1313727 1313727 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 24 ; unknown ; non-synonymous GL192740.1 samtools variation 1315795 1315795 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; synonymous GL192740.1 samtools variation 1316781 1316781 . . . alleles " C G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; non-synonymous GL192740.1 samtools variation 1316878 1316878 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; synonymous GL192740.1 samtools variation 1317109 1317109 . . . alleles " A T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; synonymous GL192741.1 samtools variation 740763 740763 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192741.1 samtools variation 741321 741321 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 85 ; unknown ; synonymous GL192741.1 samtools variation 753691 753691 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; known ; N/A GL192741.1 samtools variation 756650 756650 . . . alleles " G A"; frequencies " 0.592436974789916 0.407563025210084"; depth 238 ; known ; non-synonymous GL192741.1 samtools variation 757617 757617 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192741.1 samtools variation 758819 758819 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192741.1 samtools variation 760323 760323 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192741.1 samtools variation 762727 762727 . . . alleles " A G"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; known ; N/A GL192741.1 samtools variation 762754 762754 . . . alleles " A G"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; known ; N/A GL192741.1 samtools variation 763611 763611 . . . alleles " G A"; frequencies " 0.54 0.46"; depth 50 ; known ; N/A GL192741.1 samtools variation 765317 765317 . . . alleles " G C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192741.1 samtools variation 766508 766508 . . . alleles " A G"; frequencies " 0.539325842696629 0.460674157303371"; depth 89 ; known ; non-synonymous GL192741.1 samtools variation 773584 773584 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192741.1 samtools variation 799120 799120 . . . alleles " C A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192741.1 samtools variation 800174 800174 . . . alleles " A G"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; N/A GL192741.1 samtools variation 800195 800195 . . . alleles " G T"; frequencies " 0.475 0.525"; depth 40 ; unknown ; N/A GL192741.1 samtools variation 804227 804227 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192741.1 samtools variation 804245 804245 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192741.1 samtools variation 819192 819192 . . . alleles " G T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192741.1 samtools variation 820473 820473 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; non-synonymous GL192741.1 samtools variation 832154 832154 . . . alleles " T G"; frequencies " 0.78125 0.21875"; depth 32 ; known ; N/A GL192741.1 samtools variation 833282 833282 . . . alleles " T G"; frequencies " 0.512820512820513 0.487179487179487"; depth 39 ; unknown ; N/A GL192741.1 samtools variation 835654 835654 . . . alleles " G A"; frequencies " 0.457142857142857 0.542857142857143"; depth 210 ; unknown ; non-synonymous GL192741.1 samtools variation 849918 849918 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 40 ; unknown ; synonymous GL192741.1 samtools variation 857486 857486 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192741.1 samtools variation 865197 865197 . . . alleles " G C"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192741.1 samtools variation 911147 911147 . . . alleles " A T"; frequencies " 0.569105691056911 0.430894308943089"; depth 123 ; unknown ; N/A GL192741.1 samtools variation 920736 920736 . . . alleles " T C"; frequencies " 0.612903225806452 0.387096774193548"; depth 155 ; known ; N/A GL192741.1 samtools variation 923296 923296 . . . alleles " C T"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL192741.1 samtools variation 923406 923406 . . . alleles " G C"; frequencies " 0.561643835616438 0.438356164383562"; depth 73 ; unknown ; N/A GL192742.1 samtools variation 205076 205076 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192742.1 samtools variation 207071 207071 . . . alleles " G A"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL192742.1 samtools variation 207072 207072 . . . alleles " C T"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; known ; N/A GL192742.1 samtools variation 207175 207175 . . . alleles " C G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192742.1 samtools variation 207370 207370 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192742.1 samtools variation 207484 207484 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192742.1 samtools variation 207619 207619 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192742.1 samtools variation 209997 209997 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192742.1 samtools variation 210093 210093 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192742.1 samtools variation 211495 211495 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192742.1 samtools variation 211620 211620 . . . alleles " G T"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL192742.1 samtools variation 211658 211658 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192742.1 samtools variation 218704 218704 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192742.1 samtools variation 220783 220783 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192742.1 samtools variation 220824 220824 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192742.1 samtools variation 229585 229585 . . . alleles " G C"; frequencies " 0.40625 0.59375"; depth 96 ; unknown ; non-synonymous GL192742.1 samtools variation 253710 253710 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192742.1 samtools variation 255705 255705 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192742.1 samtools variation 257161 257161 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192742.1 samtools variation 257247 257247 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192742.1 samtools variation 257403 257403 . . . alleles " C T"; frequencies " 0.716666666666667 0.283333333333333"; depth 60 ; unknown ; N/A GL192742.1 samtools variation 257428 257428 . . . alleles " T G"; frequencies " 0.605633802816901 0.394366197183099"; depth 71 ; unknown ; N/A GL192742.1 samtools variation 257516 257516 . . . alleles " G A"; frequencies " 0.59375 0.40625"; depth 64 ; unknown ; N/A GL192742.1 samtools variation 274539 274539 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192742.1 samtools variation 280185 280185 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192742.1 samtools variation 297248 297248 . . . alleles " T A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192742.1 samtools variation 313100 313100 . . . alleles " G C"; frequencies " 0.549763033175355 0.450236966824645"; depth 211 ; known ; N/A GL192742.1 samtools variation 314613 314613 . . . alleles " T A"; frequencies " 0.781321184510251 0.218678815489749"; depth 439 ; known ; N/A GL192742.1 samtools variation 529091 529091 . . . alleles " C G"; frequencies " 0.682539682539683 0.317460317460317"; depth 63 ; unknown ; synonymous GL192742.1 samtools variation 541915 541915 . . . alleles " C T"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; unknown ; N/A GL192742.1 samtools variation 542102 542102 . . . alleles " A G"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL192742.1 samtools variation 543721 543721 . . . alleles " A G"; frequencies " 0.759259259259259 0.240740740740741"; depth 54 ; unknown ; N/A GL192742.1 samtools variation 544250 544250 . . . alleles " T C"; frequencies " 0.562130177514793 0.437869822485207"; depth 169 ; unknown ; N/A GL192742.1 samtools variation 802867 802867 . . . alleles " C T"; frequencies " 0.492957746478873 0.507042253521127"; depth 71 ; known ; synonymous GL192742.1 samtools variation 952610 952610 . . . alleles " G T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192744.1 samtools variation 796475 796475 . . . alleles " C T"; frequencies " 0.48 0.52"; depth 175 ; known ; N/A GL192744.1 samtools variation 819734 819734 . . . alleles " C T"; frequencies " 0.783132530120482 0.216867469879518"; depth 166 ; unknown ; synonymous GL192744.1 samtools variation 897515 897515 . . . alleles " C A"; frequencies " 0.660377358490566 0.339622641509434"; depth 53 ; known ; N/A GL192744.1 samtools variation 898703 898703 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192744.1 samtools variation 940524 940524 . . . alleles " T A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192744.1 samtools variation 952073 952073 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192744.1 samtools variation 952079 952079 . . . alleles " A G"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; N/A GL192744.1 samtools variation 952193 952193 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192744.1 samtools variation 952243 952243 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192744.1 samtools variation 1003162 1003162 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192744.1 samtools variation 1004812 1004812 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192744.1 samtools variation 1010214 1010214 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192744.1 samtools variation 1010289 1010289 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192744.1 samtools variation 1010543 1010543 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192744.1 samtools variation 1010600 1010600 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192744.1 samtools variation 1011514 1011514 . . . alleles " T G"; frequencies " 0.708333333333333 0.291666666666667"; depth 48 ; unknown ; N/A GL192744.1 samtools variation 1012126 1012126 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 24 ; known ; N/A GL192744.1 samtools variation 1012270 1012270 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192744.1 samtools variation 1012663 1012663 . . . alleles " G A"; frequencies " 0.306493506493506 0.693506493506494"; depth 385 ; known ; synonymous GL192744.1 samtools variation 1014308 1014308 . . . alleles " G A"; frequencies " 0.69683257918552 0.30316742081448"; depth 221 ; unknown ; synonymous GL192744.1 samtools variation 1015874 1015874 . . . alleles " G A"; frequencies " 0.276595744680851 0.723404255319149"; depth 47 ; unknown ; N/A GL192744.1 samtools variation 1016354 1016354 . . . alleles " T C"; frequencies " 0.72463768115942 0.27536231884058"; depth 69 ; unknown ; N/A GL192744.1 samtools variation 1021125 1021125 . . . alleles " T C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192744.1 samtools variation 1022957 1022957 . . . alleles " G A"; frequencies " 0.212765957446809 0.787234042553192"; depth 141 ; unknown ; N/A GL192744.1 samtools variation 1023423 1023423 . . . alleles " G A"; frequencies " 0.468822170900693 0.531177829099307"; depth 433 ; unknown ; N/A GL192744.1 samtools variation 1023551 1023551 . . . alleles " G C"; frequencies " 0.468235294117647 0.531764705882353"; depth 425 ; unknown ; N/A GL192744.1 samtools variation 1023598 1023598 . . . alleles " C A"; frequencies " 0.527508090614887 0.472491909385113"; depth 309 ; unknown ; N/A GL192744.1 samtools variation 1023614 1023614 . . . alleles " A G"; frequencies " 0.492753623188406 0.507246376811594"; depth 276 ; unknown ; N/A GL192744.1 samtools variation 1044900 1044900 . . . alleles " G C"; frequencies " 0.515151515151515 0.484848484848485"; depth 66 ; unknown ; N/A GL192744.1 samtools variation 1045658 1045658 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192744.1 samtools variation 1065336 1065336 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; non-synonymous GL192744.1 samtools variation 1085856 1085856 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192744.1 samtools variation 1085962 1085962 . . . alleles " A G"; frequencies " 0.40625 0.59375"; depth 32 ; unknown ; N/A GL192744.1 samtools variation 1085991 1085991 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 35 ; unknown ; N/A GL192744.1 samtools variation 1086174 1086174 . . . alleles " A G"; frequencies " 0.45 0.55"; depth 40 ; unknown ; N/A GL192744.1 samtools variation 1086499 1086499 . . . alleles " T C"; frequencies " 0.350515463917526 0.649484536082474"; depth 97 ; unknown ; N/A GL192744.1 samtools variation 1088061 1088061 . . . alleles " T C"; frequencies " 0.718181818181818 0.281818181818182"; depth 110 ; unknown ; N/A GL192744.1 samtools variation 1088105 1088105 . . . alleles " G C"; frequencies " 0.675675675675676 0.324324324324324"; depth 111 ; unknown ; N/A GL192744.1 samtools variation 1145273 1145273 . . . alleles " C A"; frequencies " 0.533653846153846 0.466346153846154"; depth 208 ; unknown ; N/A GL192744.1 samtools variation 1145473 1145473 . . . alleles " T C"; frequencies " 0.535714285714286 0.464285714285714"; depth 140 ; unknown ; N/A GL192744.1 samtools variation 1145481 1145481 . . . alleles " A G"; frequencies " 0.55688622754491 0.44311377245509"; depth 167 ; unknown ; N/A GL192744.1 samtools variation 1145624 1145624 . . . alleles " T C"; frequencies " 0.634615384615385 0.365384615384615"; depth 104 ; unknown ; N/A GL192744.1 samtools variation 1145863 1145863 . . . alleles " C T"; frequencies " 0.447457627118644 0.552542372881356"; depth 295 ; unknown ; N/A GL192744.1 samtools variation 1146357 1146357 . . . alleles " C G"; frequencies " 0.662650602409639 0.337349397590361"; depth 83 ; unknown ; N/A GL192744.1 samtools variation 1149474 1149474 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192744.1 samtools variation 1149566 1149566 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192744.1 samtools variation 1250245 1250245 . . . alleles " A G"; frequencies " 0.56547619047619 0.43452380952381"; depth 168 ; unknown ; N/A GL192744.1 samtools variation 1250700 1250700 . . . alleles " G A"; frequencies " 0.722972972972973 0.277027027027027"; depth 148 ; unknown ; N/A GL192744.1 samtools variation 1329753 1329753 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192744.1 samtools variation 1329930 1329930 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; N/A GL192744.1 samtools variation 1330369 1330369 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192744.1 samtools variation 1330962 1330962 . . . alleles " G T"; frequencies " 0.775 0.225"; depth 40 ; unknown ; N/A GL192744.1 samtools variation 1331256 1331256 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192744.1 samtools variation 1331930 1331930 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL192744.1 samtools variation 1332984 1332984 . . . alleles " C T"; frequencies " 0.267857142857143 0.732142857142857"; depth 56 ; known ; N/A GL192744.1 samtools variation 1346703 1346703 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192744.1 samtools variation 1357759 1357759 . . . alleles " C T"; frequencies " 0.339622641509434 0.660377358490566"; depth 53 ; known ; synonymous GL192744.1 samtools variation 1364579 1364579 . . . alleles " C T"; frequencies " 0.21875 0.78125"; depth 32 ; known ; synonymous GL192744.1 samtools variation 1368647 1368647 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 32 ; known ; synonymous GL192744.1 samtools variation 1376153 1376153 . . . alleles " C G"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; known ; non-synonymous GL192744.1 samtools variation 1457634 1457634 . . . alleles " T C"; frequencies " 0.651162790697674 0.348837209302326"; depth 43 ; known ; synonymous GL192745.1 samtools variation 14226 14226 . . . alleles " A C"; frequencies " 0.721311475409836 0.278688524590164"; depth 61 ; unknown ; N/A GL192745.1 samtools variation 93407 93407 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192745.1 samtools variation 134582 134582 . . . alleles " C T"; frequencies " 0.662650602409639 0.337349397590361"; depth 83 ; unknown ; non-synonymous GL192745.1 samtools variation 229611 229611 . . . alleles " C T"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; unknown ; N/A GL192745.1 samtools variation 229790 229790 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; unknown ; synonymous GL192745.1 samtools variation 636336 636336 . . . alleles " G A"; frequencies " 0.652777777777778 0.347222222222222"; depth 72 ; unknown ; non-synonymous GL192745.1 samtools variation 1441034 1441034 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 26 ; known ; N/A GL192747.1 samtools variation 76906 76906 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; synonymous GL192747.1 samtools variation 246473 246473 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL192747.1 samtools variation 248263 248263 . . . alleles " T A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192747.1 samtools variation 248265 248265 . . . alleles " T A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192747.1 samtools variation 334471 334471 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 63 ; unknown ; synonymous GL192747.1 samtools variation 390898 390898 . . . alleles " C T"; frequencies " 0.296875 0.703125"; depth 64 ; known ; N/A GL192747.1 samtools variation 1478306 1478306 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; synonymous GL192747.1 samtools variation 1479140 1479140 . . . alleles " T C"; frequencies " 0.68 0.32"; depth 25 ; known ; synonymous GL192747.1 samtools variation 1480199 1480199 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; synonymous GL192748.1 samtools variation 411823 411823 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192749.1 samtools variation 368271 368271 . . . alleles " C T"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; synonymous GL192749.1 samtools variation 368412 368412 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192749.1 samtools variation 368420 368420 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192749.1 samtools variation 370745 370745 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 60 ; unknown ; non-synonymous GL192749.1 samtools variation 374717 374717 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192749.1 samtools variation 376411 376411 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 85 ; unknown ; non-synonymous GL192749.1 samtools variation 376941 376941 . . . alleles " C T"; frequencies " 0.491803278688525 0.508196721311475"; depth 61 ; unknown ; synonymous GL192749.1 samtools variation 377049 377049 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192749.1 samtools variation 377141 377141 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192749.1 samtools variation 378022 378022 . . . alleles " C A"; frequencies " 0.617647058823529 0.382352941176471"; depth 68 ; unknown ; synonymous GL192749.1 samtools variation 378458 378458 . . . alleles " G C"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; unknown ; N/A GL192749.1 samtools variation 378543 378543 . . . alleles " A G"; frequencies " 0.341463414634146 0.658536585365854"; depth 41 ; unknown ; N/A GL192749.1 samtools variation 378581 378581 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; N/A GL192749.1 samtools variation 378715 378715 . . . alleles " C A"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; unknown ; N/A GL192749.1 samtools variation 559771 559771 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 54 ; unknown ; synonymous GL192749.1 samtools variation 706866 706866 . . . alleles " G T"; frequencies " 0.452380952380952 0.547619047619048"; depth 84 ; unknown ; N/A GL192749.1 samtools variation 706885 706885 . . . alleles " G A"; frequencies " 0.515625 0.484375"; depth 64 ; unknown ; N/A GL192749.1 samtools variation 706949 706949 . . . alleles " C T"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL192749.1 samtools variation 707008 707008 . . . alleles " G T"; frequencies " 0.342105263157895 0.657894736842105"; depth 38 ; unknown ; N/A GL192749.1 samtools variation 707113 707113 . . . alleles " G A"; frequencies " 0.465116279069767 0.534883720930233"; depth 43 ; unknown ; N/A GL192749.1 samtools variation 707246 707246 . . . alleles " A T"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; N/A GL192749.1 samtools variation 707293 707293 . . . alleles " G A"; frequencies " 0.783132530120482 0.216867469879518"; depth 83 ; unknown ; N/A GL192749.1 samtools variation 707363 707363 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL192749.1 samtools variation 707413 707413 . . . alleles " G A"; frequencies " 0.549450549450549 0.450549450549451"; depth 91 ; unknown ; N/A GL192749.1 samtools variation 707579 707579 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 40 ; unknown ; N/A GL192749.1 samtools variation 708268 708268 . . . alleles " C G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192749.1 samtools variation 709942 709942 . . . alleles " C T"; frequencies " 0.68 0.32"; depth 100 ; known ; synonymous GL192749.1 samtools variation 718002 718002 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; synonymous GL192749.1 samtools variation 718029 718029 . . . alleles " G A"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; synonymous GL192749.1 samtools variation 719297 719297 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; synonymous GL192749.1 samtools variation 829745 829745 . . . alleles " A G"; frequencies " 0.315789473684211 0.684210526315789"; depth 38 ; known ; non-synonymous GL192749.1 samtools variation 830189 830189 . . . alleles " G T"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; non-synonymous GL192749.1 samtools variation 831023 831023 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 20 ; known ; non-synonymous GL192749.1 samtools variation 831271 831271 . . . alleles " G A"; frequencies " 0.28125 0.71875"; depth 32 ; known ; synonymous GL192749.1 samtools variation 843103 843103 . . . alleles " A G"; frequencies " 0.482014388489209 0.517985611510791"; depth 139 ; unknown ; synonymous GL192749.1 samtools variation 843743 843743 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 76 ; unknown ; N/A GL192749.1 samtools variation 843757 843757 . . . alleles " G C"; frequencies " 0.220779220779221 0.779220779220779"; depth 77 ; known ; N/A GL192749.1 samtools variation 846044 846044 . . . alleles " A T"; frequencies " 0.410894941634241 0.589105058365759"; depth 1285 ; unknown ; N/A GL192749.1 samtools variation 846377 846377 . . . alleles " T C"; frequencies " 0.616454229432213 0.383545770567787"; depth 863 ; unknown ; N/A GL192749.1 samtools variation 846584 846584 . . . alleles " G A"; frequencies " 0.619094488188976 0.380905511811024"; depth 1016 ; unknown ; N/A GL192749.1 samtools variation 847422 847422 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192749.1 samtools variation 848504 848504 . . . alleles " G A"; frequencies " 0.597087378640777 0.402912621359223"; depth 1442 ; unknown ; synonymous GL192749.1 samtools variation 849439 849439 . . . alleles " T A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192749.1 samtools variation 850732 850732 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 25 ; known ; N/A GL192749.1 samtools variation 854122 854122 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192749.1 samtools variation 857407 857407 . . . alleles " G A"; frequencies " 0.646055437100213 0.353944562899787"; depth 469 ; unknown ; synonymous GL192749.1 samtools variation 857491 857491 . . . alleles " T C"; frequencies " 0.651574803149606 0.348425196850394"; depth 508 ; unknown ; synonymous GL192749.1 samtools variation 857871 857871 . . . alleles " T G"; frequencies " 0.572314049586777 0.427685950413223"; depth 484 ; unknown ; non-synonymous GL192749.1 samtools variation 863164 863164 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192749.1 samtools variation 877399 877399 . . . alleles " G A"; frequencies " 0.535714285714286 0.464285714285714"; depth 448 ; unknown ; non-synonymous GL192749.1 samtools variation 890044 890044 . . . alleles " T C"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; known ; N/A GL192749.1 samtools variation 891764 891764 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192749.1 samtools variation 906109 906109 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 42 ; known ; N/A GL192749.1 samtools variation 907351 907351 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 26 ; known ; N/A GL192749.1 samtools variation 908479 908479 . . . alleles " A G"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192749.1 samtools variation 911411 911411 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192749.1 samtools variation 911513 911513 . . . alleles " C T"; frequencies " 0.624 0.376"; depth 125 ; known ; N/A GL192749.1 samtools variation 915473 915473 . . . alleles " T C"; frequencies " 0.257142857142857 0.742857142857143"; depth 35 ; known ; N/A GL192749.1 samtools variation 916302 916302 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; N/A GL192749.1 samtools variation 942188 942188 . . . alleles " T C"; frequencies " 0.657657657657658 0.342342342342342"; depth 111 ; unknown ; synonymous GL192749.1 samtools variation 964687 964687 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192749.1 samtools variation 965422 965422 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192749.1 samtools variation 970087 970087 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192749.1 samtools variation 970635 970635 . . . alleles " C G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192749.1 samtools variation 970715 970715 . . . alleles " T C"; frequencies " 0.497942386831276 0.502057613168724"; depth 243 ; unknown ; synonymous GL192749.1 samtools variation 971393 971393 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 54 ; unknown ; N/A GL192749.1 samtools variation 986293 986293 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192749.1 samtools variation 987369 987369 . . . alleles " T C"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; N/A GL192749.1 samtools variation 991314 991314 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192749.1 samtools variation 993084 993084 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192749.1 samtools variation 996662 996662 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192749.1 samtools variation 1030195 1030195 . . . alleles " C A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192749.1 samtools variation 1069851 1069851 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 51 ; unknown ; N/A GL192749.1 samtools variation 1069929 1069929 . . . alleles " A T"; frequencies " 0.27027027027027 0.72972972972973"; depth 37 ; unknown ; N/A GL192749.1 samtools variation 1070401 1070401 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; unknown ; N/A GL192749.1 samtools variation 1070473 1070473 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192749.1 samtools variation 1070519 1070519 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192749.1 samtools variation 1070615 1070615 . . . alleles " T C"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; unknown ; N/A GL192749.1 samtools variation 1202642 1202642 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192749.1 samtools variation 1206079 1206079 . . . alleles " G A"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; unknown ; N/A GL192749.1 samtools variation 1207789 1207789 . . . alleles " G A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192749.1 samtools variation 1215430 1215430 . . . alleles " G A"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL192749.1 samtools variation 1232101 1232101 . . . alleles " A G"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL192749.1 samtools variation 1286599 1286599 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192749.1 samtools variation 1287224 1287224 . . . alleles " G T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192749.1 samtools variation 1287893 1287893 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192749.1 samtools variation 1288295 1288295 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192749.1 samtools variation 1289911 1289911 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; known ; N/A GL192749.1 samtools variation 1291705 1291705 . . . alleles " C G"; frequencies " 0.789772727272727 0.210227272727273"; depth 176 ; unknown ; N/A GL192749.1 samtools variation 1291984 1291984 . . . alleles " A G"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; unknown ; N/A GL192749.1 samtools variation 1292378 1292378 . . . alleles " C T"; frequencies " 0.763636363636364 0.236363636363636"; depth 110 ; known ; N/A GL192749.1 samtools variation 1303722 1303722 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192749.1 samtools variation 1343370 1343370 . . . alleles " G C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192749.1 samtools variation 1343741 1343741 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL192749.1 samtools variation 1343958 1343958 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192749.1 samtools variation 1384021 1384021 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192751.1 samtools variation 691096 691096 . . . alleles " T C"; frequencies " 0.630769230769231 0.369230769230769"; depth 65 ; unknown ; synonymous GL192751.1 samtools variation 711860 711860 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192751.1 samtools variation 732850 732850 . . . alleles " G A"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; non-synonymous GL192751.1 samtools variation 761625 761625 . . . alleles " G C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192751.1 samtools variation 761629 761629 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192751.1 samtools variation 766134 766134 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192751.1 samtools variation 769286 769286 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192751.1 samtools variation 781107 781107 . . . alleles " A G"; frequencies " 0.661290322580645 0.338709677419355"; depth 62 ; unknown ; synonymous GL192751.1 samtools variation 781170 781170 . . . alleles " A G"; frequencies " 0.678571428571429 0.321428571428571"; depth 84 ; unknown ; N/A GL192751.1 samtools variation 781235 781235 . . . alleles " T C"; frequencies " 0.279279279279279 0.720720720720721"; depth 111 ; unknown ; N/A GL192751.1 samtools variation 861236 861236 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192751.1 samtools variation 895736 895736 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192751.1 samtools variation 1030771 1030771 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 66 ; known ; non-synonymous GL192751.1 samtools variation 1030972 1030972 . . . alleles " A G"; frequencies " 0.373626373626374 0.626373626373626"; depth 91 ; known ; non-synonymous GL192751.1 samtools variation 1031023 1031023 . . . alleles " G A"; frequencies " 0.632183908045977 0.367816091954023"; depth 87 ; known ; non-synonymous GL192751.1 samtools variation 1031121 1031121 . . . alleles " A G"; frequencies " 0.320512820512821 0.67948717948718"; depth 78 ; known ; synonymous GL192751.1 samtools variation 1044451 1044451 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192751.1 samtools variation 1044889 1044889 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192751.1 samtools variation 1046327 1046327 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192751.1 samtools variation 1046636 1046636 . . . alleles " G C"; frequencies " 0.681818181818182 0.318181818181818"; depth 44 ; unknown ; N/A GL192751.1 samtools variation 1047105 1047105 . . . alleles " T C"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192751.1 samtools variation 1049971 1049971 . . . alleles " T C"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192751.1 samtools variation 1050064 1050064 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192751.1 samtools variation 1050163 1050163 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192751.1 samtools variation 1050923 1050923 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192751.1 samtools variation 1050976 1050976 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192751.1 samtools variation 1052020 1052020 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 68 ; unknown ; N/A GL192751.1 samtools variation 1052061 1052061 . . . alleles " T C"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; unknown ; N/A GL192751.1 samtools variation 1052089 1052089 . . . alleles " G A"; frequencies " 0.78494623655914 0.21505376344086"; depth 93 ; unknown ; N/A GL192751.1 samtools variation 1052403 1052403 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 84 ; unknown ; N/A GL192751.1 samtools variation 1052521 1052521 . . . alleles " T C"; frequencies " 0.74 0.26"; depth 100 ; unknown ; N/A GL192751.1 samtools variation 1052726 1052726 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192751.1 samtools variation 1053309 1053309 . . . alleles " C G"; frequencies " 0.738095238095238 0.261904761904762"; depth 84 ; unknown ; N/A GL192751.1 samtools variation 1053420 1053420 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 45 ; unknown ; non-synonymous GL192751.1 samtools variation 1145235 1145235 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 63 ; known ; N/A GL192751.1 samtools variation 1145350 1145350 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 102 ; known ; N/A GL192751.1 samtools variation 1150420 1150420 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 24 ; known ; N/A GL192751.1 samtools variation 1154216 1154216 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 63 ; known ; N/A GL192751.1 samtools variation 1156949 1156949 . . . alleles " G A"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192751.1 samtools variation 1158347 1158347 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192751.1 samtools variation 1159233 1159233 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192751.1 samtools variation 1159417 1159417 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192751.1 samtools variation 1163347 1163347 . . . alleles " T G"; frequencies " 0.587837837837838 0.412162162162162"; depth 148 ; known ; N/A GL192751.1 samtools variation 1163405 1163405 . . . alleles " C T"; frequencies " 0.605839416058394 0.394160583941606"; depth 137 ; known ; N/A GL192751.1 samtools variation 1163504 1163504 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 182 ; known ; N/A GL192751.1 samtools variation 1164575 1164575 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192751.1 samtools variation 1167010 1167010 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192751.1 samtools variation 1167093 1167093 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192751.1 samtools variation 1167766 1167766 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192751.1 samtools variation 1170057 1170057 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; unknown ; N/A GL192751.1 samtools variation 1204053 1204053 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192751.1 samtools variation 1209321 1209321 . . . alleles " C G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192751.1 samtools variation 1242120 1242120 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL192751.1 samtools variation 1247743 1247743 . . . alleles " C T"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; N/A GL192751.1 samtools variation 1249088 1249088 . . . alleles " T A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192751.1 samtools variation 1254072 1254072 . . . alleles " T A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192751.1 samtools variation 1282255 1282255 . . . alleles " T A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192751.1 samtools variation 1292370 1292370 . . . alleles " G A"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; known ; N/A GL192751.1 samtools variation 1292918 1292918 . . . alleles " G C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192751.1 samtools variation 1293669 1293669 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; known ; N/A GL192751.1 samtools variation 1362058 1362058 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192751.1 samtools variation 1363566 1363566 . . . alleles " G A"; frequencies " 0.463235294117647 0.536764705882353"; depth 136 ; known ; synonymous GL192751.1 samtools variation 1366893 1366893 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 78 ; known ; N/A GL192751.1 samtools variation 1367437 1367437 . . . alleles " A G"; frequencies " 0.431372549019608 0.568627450980392"; depth 306 ; known ; N/A GL192751.1 samtools variation 1367488 1367488 . . . alleles " T C"; frequencies " 0.625352112676056 0.374647887323944"; depth 355 ; known ; N/A GL192751.1 samtools variation 1367647 1367647 . . . alleles " T C"; frequencies " 0.40625 0.59375"; depth 32 ; known ; N/A GL192752.1 samtools variation 1227222 1227222 . . . alleles " A G"; frequencies " 0.709090909090909 0.290909090909091"; depth 55 ; unknown ; N/A GL192752.1 samtools variation 1228871 1228871 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL192752.1 samtools variation 1230092 1230092 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192752.1 samtools variation 1231381 1231381 . . . alleles " G C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192753.1 samtools variation 214679 214679 . . . alleles " A G"; frequencies " 0.362523540489642 0.637476459510358"; depth 1062 ; known ; N/A GL192753.1 samtools variation 215320 215320 . . . alleles " G A"; frequencies " 0.602564102564103 0.397435897435897"; depth 702 ; unknown ; N/A GL192753.1 samtools variation 322087 322087 . . . alleles " G A"; frequencies " 0.426512968299712 0.573487031700288"; depth 347 ; known ; N/A GL192753.1 samtools variation 396202 396202 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192753.1 samtools variation 465935 465935 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192753.1 samtools variation 466070 466070 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192753.1 samtools variation 468314 468314 . . . alleles " T G"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192753.1 samtools variation 468730 468730 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192753.1 samtools variation 473819 473819 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192753.1 samtools variation 473854 473854 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL192753.1 samtools variation 483810 483810 . . . alleles " G A"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; N/A GL192753.1 samtools variation 487120 487120 . . . alleles " C T"; frequencies " 0.732758620689655 0.267241379310345"; depth 116 ; unknown ; N/A GL192753.1 samtools variation 501073 501073 . . . alleles " A T"; frequencies " 0.691666666666667 0.308333333333333"; depth 120 ; unknown ; non-synonymous GL192753.1 samtools variation 506940 506940 . . . alleles " G A"; frequencies " 0.745454545454545 0.254545454545455"; depth 55 ; unknown ; N/A GL192753.1 samtools variation 516318 516318 . . . alleles " C T"; frequencies " 0.45 0.55"; depth 40 ; unknown ; synonymous GL192753.1 samtools variation 523004 523004 . . . alleles " T G"; frequencies " 0.73469387755102 0.26530612244898"; depth 98 ; unknown ; non-synonymous GL192753.1 samtools variation 762701 762701 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; non-synonymous GL192753.1 samtools variation 764048 764048 . . . alleles " A T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; non-synonymous GL192753.1 samtools variation 996152 996152 . . . alleles " T C"; frequencies " 0.76984126984127 0.23015873015873"; depth 126 ; unknown ; non-synonymous GL192753.1 samtools variation 1236617 1236617 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 35 ; known ; N/A GL192753.1 samtools variation 1236946 1236946 . . . alleles " C A"; frequencies " 0.257142857142857 0.742857142857143"; depth 35 ; known ; N/A GL192753.1 samtools variation 1258439 1258439 . . . alleles " T A"; frequencies " 0.55 0.45"; depth 40 ; known ; synonymous GL192753.1 samtools variation 1258481 1258481 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 20 ; known ; synonymous GL192754.1 samtools variation 183109 183109 . . . alleles " G A"; frequencies " 0.779411764705882 0.220588235294118"; depth 68 ; unknown ; N/A GL192754.1 samtools variation 183232 183232 . . . alleles " C T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192754.1 samtools variation 183658 183658 . . . alleles " C G"; frequencies " 0.375 0.625"; depth 32 ; known ; N/A GL192754.1 samtools variation 184480 184480 . . . alleles " G T"; frequencies " 0.533333333333333 0.466666666666667"; depth 45 ; unknown ; N/A GL192754.1 samtools variation 261065 261065 . . . alleles " T C"; frequencies " 0.404255319148936 0.595744680851064"; depth 235 ; known ; synonymous GL192754.1 samtools variation 299733 299733 . . . alleles " A G"; frequencies " 0.516666666666667 0.483333333333333"; depth 60 ; known ; non-synonymous GL192754.1 samtools variation 300301 300301 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192754.1 samtools variation 300327 300327 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192754.1 samtools variation 300497 300497 . . . alleles " C G"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192754.1 samtools variation 304954 304954 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192754.1 samtools variation 512004 512004 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 39 ; known ; N/A GL192754.1 samtools variation 678443 678443 . . . alleles " A G"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; non-synonymous GL192754.1 samtools variation 1079849 1079849 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; non-synonymous GL192754.1 samtools variation 1393194 1393194 . . . alleles " A G"; frequencies " 0.605882352941176 0.394117647058824"; depth 170 ; known ; N/A GL192754.1 samtools variation 1393289 1393289 . . . alleles " C T"; frequencies " 0.609090909090909 0.390909090909091"; depth 220 ; known ; N/A GL192754.1 samtools variation 1414631 1414631 . . . alleles " G A"; frequencies " 0.58695652173913 0.41304347826087"; depth 46 ; known ; N/A GL192754.1 samtools variation 1414738 1414738 . . . alleles " T C"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL192754.1 samtools variation 1429204 1429204 . . . alleles " T C"; frequencies " 0.333333333333333 0.611111111111111"; depth 18 ; known ; N/A GL192754.1 samtools variation 1438139 1438139 . . . alleles " A G"; frequencies " 0.381720430107527 0.618279569892473"; depth 186 ; known ; synonymous GL192754.1 samtools variation 1439201 1439201 . . . alleles " A G"; frequencies " 0.341463414634146 0.658536585365854"; depth 41 ; known ; N/A GL192754.1 samtools variation 1439992 1439992 . . . alleles " T C"; frequencies " 0.415094339622642 0.584905660377358"; depth 53 ; known ; N/A GL192754.1 samtools variation 1457813 1457813 . . . alleles " T C"; frequencies " 0.474885844748858 0.525114155251142"; depth 219 ; known ; synonymous GL192754.1 samtools variation 1469019 1469019 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192754.1 samtools variation 1471920 1471920 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192754.1 samtools variation 1473203 1473203 . . . alleles " T A"; frequencies " 0.387096774193548 0.612903225806452"; depth 186 ; known ; N/A GL192754.1 samtools variation 1473245 1473245 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 266 ; known ; N/A GL192754.1 samtools variation 1473383 1473383 . . . alleles " G A"; frequencies " 0.618473895582329 0.381526104417671"; depth 249 ; known ; N/A GL192754.1 samtools variation 1473535 1473535 . . . alleles " A G"; frequencies " 0.548022598870056 0.451977401129944"; depth 177 ; known ; N/A GL192754.1 samtools variation 1473613 1473613 . . . alleles " T C"; frequencies " 0.5489443378119 0.4510556621881"; depth 521 ; known ; N/A GL192754.1 samtools variation 1474327 1474327 . . . alleles " C T"; frequencies " 0.459016393442623 0.540983606557377"; depth 122 ; known ; N/A GL192754.1 samtools variation 1474938 1474938 . . . alleles " G C"; frequencies " 0.471641791044776 0.528358208955224"; depth 335 ; known ; N/A GL192754.1 samtools variation 1476563 1476563 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192754.1 samtools variation 1477601 1477601 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192754.1 samtools variation 1477797 1477797 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL192756.1 samtools variation 373955 373955 . . . alleles " C G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192756.1 samtools variation 374556 374556 . . . alleles " A G"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; known ; N/A GL192756.1 samtools variation 374561 374561 . . . alleles " C T"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; known ; N/A GL192756.1 samtools variation 375665 375665 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; known ; N/A GL192756.1 samtools variation 375914 375914 . . . alleles " A G"; frequencies " 0.664383561643836 0.335616438356164"; depth 146 ; known ; synonymous GL192756.1 samtools variation 376612 376612 . . . alleles " T C"; frequencies " 0.30188679245283 0.69811320754717"; depth 106 ; known ; synonymous GL192757.1 samtools variation 867874 867874 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192757.1 samtools variation 908459 908459 . . . alleles " G A"; frequencies " 0.743243243243243 0.256756756756757"; depth 148 ; unknown ; N/A GL192757.1 samtools variation 1217920 1217920 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192757.1 samtools variation 1223984 1223984 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192757.1 samtools variation 1339242 1339242 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192757.1 samtools variation 1341640 1341640 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL192757.1 samtools variation 1341673 1341673 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192757.1 samtools variation 1344185 1344185 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; synonymous GL192757.1 samtools variation 1346619 1346619 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192757.1 samtools variation 1347527 1347527 . . . alleles " C A"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; known ; N/A GL192757.1 samtools variation 1347610 1347610 . . . alleles " A G"; frequencies " 0.53125 0.46875"; depth 32 ; known ; N/A GL192757.1 samtools variation 1347680 1347680 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL192757.1 samtools variation 1347750 1347750 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL192757.1 samtools variation 1347785 1347785 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192758.1 samtools variation 657907 657907 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192758.1 samtools variation 665180 665180 . . . alleles " G A"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; unknown ; N/A GL192758.1 samtools variation 670892 670892 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; N/A GL192758.1 samtools variation 674725 674725 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192758.1 samtools variation 675138 675138 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192758.1 samtools variation 676916 676916 . . . alleles " T C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192758.1 samtools variation 680326 680326 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL192758.1 samtools variation 685819 685819 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192758.1 samtools variation 695636 695636 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192758.1 samtools variation 695937 695937 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192758.1 samtools variation 853941 853941 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 63 ; known ; N/A GL192758.1 samtools variation 861735 861735 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192758.1 samtools variation 861740 861740 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192758.1 samtools variation 872721 872721 . . . alleles " T C"; frequencies " 0.595959595959596 0.404040404040404"; depth 99 ; unknown ; synonymous GL192758.1 samtools variation 875646 875646 . . . alleles " A C"; frequencies " 0.603658536585366 0.396341463414634"; depth 164 ; unknown ; synonymous GL192758.1 samtools variation 893483 893483 . . . alleles " A G"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; unknown ; N/A GL192758.1 samtools variation 1047475 1047475 . . . alleles " G A"; frequencies " 0.664516129032258 0.335483870967742"; depth 155 ; known ; synonymous GL192758.1 samtools variation 1113285 1113285 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; N/A GL192759.1 samtools variation 627576 627576 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192760.1 samtools variation 17296 17296 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL192760.1 samtools variation 17316 17316 . . . alleles " A T"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; known ; N/A GL192760.1 samtools variation 17506 17506 . . . alleles " C G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; N/A GL192760.1 samtools variation 179703 179703 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 32 ; known ; N/A GL192760.1 samtools variation 180253 180253 . . . alleles " C T"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192760.1 samtools variation 181722 181722 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 81 ; unknown ; N/A GL192760.1 samtools variation 181851 181851 . . . alleles " G A"; frequencies " 0.64367816091954 0.35632183908046"; depth 87 ; unknown ; N/A GL192760.1 samtools variation 183316 183316 . . . alleles " A T"; frequencies " 0.482758620689655 0.517241379310345"; depth 58 ; unknown ; N/A GL192760.1 samtools variation 183354 183354 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 75 ; unknown ; N/A GL192760.1 samtools variation 236455 236455 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; synonymous GL192760.1 samtools variation 297560 297560 . . . alleles " G T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192760.1 samtools variation 433744 433744 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192760.1 samtools variation 948211 948211 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192760.1 samtools variation 949683 949683 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 42 ; unknown ; N/A GL192760.1 samtools variation 950381 950381 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192760.1 samtools variation 951782 951782 . . . alleles " C T"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; synonymous GL192760.1 samtools variation 1008049 1008049 . . . alleles " T C"; frequencies " 0.361111111111111 0.638888888888889"; depth 36 ; unknown ; N/A GL192760.1 samtools variation 1008088 1008088 . . . alleles " C G"; frequencies " 0.454545454545455 0.545454545454545"; depth 55 ; unknown ; N/A GL192760.1 samtools variation 1079569 1079569 . . . alleles " A G"; frequencies " 0.242424242424242 0.757575757575758"; depth 33 ; unknown ; synonymous GL192760.1 samtools variation 1079573 1079573 . . . alleles " G A"; frequencies " 0.242424242424242 0.757575757575758"; depth 33 ; unknown ; synonymous GL192761.1 samtools variation 202253 202253 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192761.1 samtools variation 202445 202445 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192761.1 samtools variation 203778 203778 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192761.1 samtools variation 205334 205334 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192761.1 samtools variation 207401 207401 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192761.1 samtools variation 208028 208028 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192761.1 samtools variation 208219 208219 . . . alleles " G T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192761.1 samtools variation 208945 208945 . . . alleles " A C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192761.1 samtools variation 210436 210436 . . . alleles " G A"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; known ; N/A GL192761.1 samtools variation 210599 210599 . . . alleles " A C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192761.1 samtools variation 210896 210896 . . . alleles " T C"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL192761.1 samtools variation 211811 211811 . . . alleles " T C"; frequencies " 0.485981308411215 0.514018691588785"; depth 107 ; known ; N/A GL192761.1 samtools variation 212271 212271 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192761.1 samtools variation 212876 212876 . . . alleles " T C"; frequencies " 0.620689655172414 0.379310344827586"; depth 58 ; known ; N/A GL192761.1 samtools variation 213365 213365 . . . alleles " C T"; frequencies " 0.775397796817625 0.224602203182375"; depth 3268 ; known ; synonymous GL192761.1 samtools variation 216258 216258 . . . alleles " A G"; frequencies " 0.757281553398058 0.242718446601942"; depth 103 ; known ; N/A GL192761.1 samtools variation 217651 217651 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL192761.1 samtools variation 219717 219717 . . . alleles " T C"; frequencies " 0.283819628647215 0.716180371352785"; depth 377 ; unknown ; N/A GL192761.1 samtools variation 221761 221761 . . . alleles " T C"; frequencies " 0.227848101265823 0.759493670886076"; depth 79 ; known ; N/A GL192761.1 samtools variation 221876 221876 . . . alleles " G A"; frequencies " 0.760683760683761 0.239316239316239"; depth 117 ; known ; N/A GL192761.1 samtools variation 224658 224658 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192761.1 samtools variation 244098 244098 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192761.1 samtools variation 244189 244189 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192761.1 samtools variation 244313 244313 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192761.1 samtools variation 244453 244453 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192761.1 samtools variation 764354 764354 . . . alleles " A G"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; known ; N/A GL192761.1 samtools variation 768362 768362 . . . alleles " C A"; frequencies " 0.738461538461539 0.261538461538462"; depth 65 ; unknown ; synonymous GL192761.1 samtools variation 1054570 1054570 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; N/A GL192761.1 samtools variation 1054619 1054619 . . . alleles " T C"; frequencies " 0.382352941176471 0.617647058823529"; depth 34 ; unknown ; N/A GL192761.1 samtools variation 1054751 1054751 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192761.1 samtools variation 1055158 1055158 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; N/A GL192761.1 samtools variation 1055286 1055286 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192761.1 samtools variation 1055406 1055406 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192761.1 samtools variation 1055472 1055472 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192761.1 samtools variation 1055696 1055696 . . . alleles " A G"; frequencies " 0.490566037735849 0.509433962264151"; depth 53 ; unknown ; N/A GL192761.1 samtools variation 1055779 1055779 . . . alleles " G A"; frequencies " 0.543859649122807 0.456140350877193"; depth 57 ; unknown ; N/A GL192761.1 samtools variation 1056169 1056169 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192761.1 samtools variation 1056308 1056308 . . . alleles " A G"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192761.1 samtools variation 1056492 1056492 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192761.1 samtools variation 1056511 1056511 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192761.1 samtools variation 1056617 1056617 . . . alleles " A G"; frequencies " 0.406779661016949 0.593220338983051"; depth 59 ; known ; N/A GL192761.1 samtools variation 1056662 1056662 . . . alleles " A T"; frequencies " 0.608695652173913 0.391304347826087"; depth 46 ; known ; N/A GL192761.1 samtools variation 1057438 1057438 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192761.1 samtools variation 1057865 1057865 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 54 ; unknown ; N/A GL192761.1 samtools variation 1059647 1059647 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 50 ; unknown ; N/A GL192761.1 samtools variation 1060517 1060517 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; known ; N/A GL192761.1 samtools variation 1064889 1064889 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL192761.1 samtools variation 1070300 1070300 . . . alleles " C T"; frequencies " 0.638888888888889 0.361111111111111"; depth 72 ; known ; non-synonymous GL192761.1 samtools variation 1070347 1070347 . . . alleles " A G"; frequencies " 0.696969696969697 0.303030303030303"; depth 66 ; known ; non-synonymous GL192761.1 samtools variation 1073042 1073042 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192761.1 samtools variation 1073308 1073308 . . . alleles " C T"; frequencies " 0.661157024793388 0.338842975206612"; depth 121 ; unknown ; non-synonymous GL192761.1 samtools variation 1073372 1073372 . . . alleles " A G"; frequencies " 0.653846153846154 0.346153846153846"; depth 130 ; unknown ; synonymous GL192761.1 samtools variation 1073718 1073718 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192762.1 samtools variation 91714 91714 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192762.1 samtools variation 658371 658371 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192762.1 samtools variation 677976 677976 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 72 ; known ; N/A GL192762.1 samtools variation 678661 678661 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192762.1 samtools variation 718682 718682 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192762.1 samtools variation 719212 719212 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL192762.1 samtools variation 719581 719581 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL192762.1 samtools variation 771221 771221 . . . alleles " A G"; frequencies " 0.652777777777778 0.347222222222222"; depth 72 ; known ; N/A GL192762.1 samtools variation 937733 937733 . . . alleles " A G"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; known ; N/A GL192762.1 samtools variation 937910 937910 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; N/A GL192762.1 samtools variation 938600 938600 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192762.1 samtools variation 939365 939365 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL192762.1 samtools variation 940315 940315 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192762.1 samtools variation 955597 955597 . . . alleles " G C"; frequencies " 0.73469387755102 0.26530612244898"; depth 49 ; unknown ; N/A GL192762.1 samtools variation 1006403 1006403 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192762.1 samtools variation 1010840 1010840 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 44 ; known ; synonymous GL192764.1 samtools variation 257154 257154 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192764.1 samtools variation 257694 257694 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; synonymous GL192764.1 samtools variation 258148 258148 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; non-synonymous GL192764.1 samtools variation 341059 341059 . . . alleles " T C"; frequencies " 0.258064516129032 0.741935483870968"; depth 62 ; known ; N/A GL192764.1 samtools variation 401044 401044 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; unknown ; N/A GL192764.1 samtools variation 401045 401045 . . . alleles " A C"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; unknown ; N/A GL192764.1 samtools variation 490465 490465 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 104 ; unknown ; synonymous GL192764.1 samtools variation 491188 491188 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192764.1 samtools variation 575158 575158 . . . alleles " C T"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192764.1 samtools variation 585948 585948 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192764.1 samtools variation 594051 594051 . . . alleles " G T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192764.1 samtools variation 594706 594706 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192764.1 samtools variation 596566 596566 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192764.1 samtools variation 601826 601826 . . . alleles " G C"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192764.1 samtools variation 601843 601843 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192764.1 samtools variation 601992 601992 . . . alleles " G A"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192764.1 samtools variation 602871 602871 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192764.1 samtools variation 602985 602985 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192764.1 samtools variation 603176 603176 . . . alleles " G A"; frequencies " 0.469387755102041 0.530612244897959"; depth 49 ; known ; N/A GL192764.1 samtools variation 603649 603649 . . . alleles " G A"; frequencies " 0.652631578947368 0.347368421052632"; depth 95 ; known ; N/A GL192764.1 samtools variation 604478 604478 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192764.1 samtools variation 607490 607490 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192764.1 samtools variation 637694 637694 . . . alleles " T A"; frequencies " 0.377521613832853 0.619596541786744"; depth 347 ; unknown ; synonymous GL192764.1 samtools variation 672066 672066 . . . alleles " G A"; frequencies " 0.796261682242991 0.203738317757009"; depth 535 ; unknown ; non-synonymous GL192764.1 samtools variation 672493 672493 . . . alleles " G A"; frequencies " 0.757009345794392 0.242990654205607"; depth 214 ; unknown ; synonymous GL192764.1 samtools variation 1370490 1370490 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; synonymous GL192765.1 samtools variation 84964 84964 . . . alleles " C G"; frequencies " 0.298531810766721 0.701468189233279"; depth 613 ; unknown ; synonymous GL192765.1 samtools variation 330638 330638 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192765.1 samtools variation 344415 344415 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 70 ; unknown ; N/A GL192765.1 samtools variation 344819 344819 . . . alleles " C T"; frequencies " 0.682539682539683 0.317460317460317"; depth 63 ; unknown ; N/A GL192765.1 samtools variation 350500 350500 . . . alleles " C T"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; unknown ; N/A GL192765.1 samtools variation 357291 357291 . . . alleles " A C"; frequencies " 0.313432835820896 0.686567164179104"; depth 67 ; unknown ; non-synonymous GL192765.1 samtools variation 363479 363479 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 72 ; unknown ; synonymous GL192765.1 samtools variation 363890 363890 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; unknown ; synonymous GL192765.1 samtools variation 408608 408608 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192765.1 samtools variation 417611 417611 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 38 ; known ; N/A GL192765.1 samtools variation 516874 516874 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192765.1 samtools variation 550015 550015 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 45 ; unknown ; N/A GL192765.1 samtools variation 554669 554669 . . . alleles " T A"; frequencies " 0.554744525547445 0.445255474452555"; depth 137 ; unknown ; synonymous GL192765.1 samtools variation 576970 576970 . . . alleles " C G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192765.1 samtools variation 737340 737340 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192765.1 samtools variation 747058 747058 . . . alleles " A C"; frequencies " 0.631578947368421 0.368421052631579"; depth 76 ; known ; N/A GL192765.1 samtools variation 812452 812452 . . . alleles " T C"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL192765.1 samtools variation 824228 824228 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192765.1 samtools variation 854221 854221 . . . alleles " T C"; frequencies " 0.265486725663717 0.734513274336283"; depth 113 ; known ; N/A GL192765.1 samtools variation 854729 854729 . . . alleles " A G"; frequencies " 0.408045977011494 0.591954022988506"; depth 174 ; known ; synonymous GL192765.1 samtools variation 970389 970389 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 42 ; unknown ; synonymous GL192765.1 samtools variation 1065733 1065733 . . . alleles " G C"; frequencies " 0.62 0.38"; depth 50 ; unknown ; N/A GL192765.1 samtools variation 1072936 1072936 . . . alleles " G C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192765.1 samtools variation 1082530 1082530 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192765.1 samtools variation 1100222 1100222 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192765.1 samtools variation 1175238 1175238 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192765.1 samtools variation 1185544 1185544 . . . alleles " T C"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL192765.1 samtools variation 1186065 1186065 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192765.1 samtools variation 1192772 1192772 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192765.1 samtools variation 1193953 1193953 . . . alleles " T C"; frequencies " 0.317307692307692 0.682692307692308"; depth 312 ; unknown ; N/A GL192765.1 samtools variation 1193977 1193977 . . . alleles " A C"; frequencies " 0.64983164983165 0.35016835016835"; depth 297 ; unknown ; N/A GL192765.1 samtools variation 1274887 1274887 . . . alleles " G A"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL192765.1 samtools variation 1274890 1274890 . . . alleles " C T"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL192765.1 samtools variation 1275023 1275023 . . . alleles " G T"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192765.1 samtools variation 1283909 1283909 . . . alleles " T G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192765.1 samtools variation 1285983 1285983 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192765.1 samtools variation 1293367 1293367 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192765.1 samtools variation 1302489 1302489 . . . alleles " T G"; frequencies " 0.672 0.32"; depth 125 ; known ; synonymous GL192765.1 samtools variation 1308166 1308166 . . . alleles " C T"; frequencies " 0.680851063829787 0.319148936170213"; depth 47 ; unknown ; N/A GL192765.1 samtools variation 1309992 1309992 . . . alleles " G T"; frequencies " 0.434210526315789 0.565789473684211"; depth 76 ; known ; N/A GL192765.1 samtools variation 1315399 1315399 . . . alleles " G A"; frequencies " 0.270358306188925 0.729641693811075"; depth 307 ; known ; non-synonymous GL192765.1 samtools variation 1317253 1317253 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192765.1 samtools variation 1351948 1351948 . . . alleles " A T"; frequencies " 0.316326530612245 0.683673469387755"; depth 98 ; known ; synonymous GL192765.1 samtools variation 1360196 1360196 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; N/A GL192765.1 samtools variation 1367675 1367675 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192765.1 samtools variation 1381169 1381169 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192765.1 samtools variation 1381999 1381999 . . . alleles " G A"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; known ; synonymous GL192765.1 samtools variation 1382134 1382134 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 32 ; unknown ; synonymous GL192765.1 samtools variation 1383393 1383393 . . . alleles " G A"; frequencies " 0.23728813559322 0.745762711864407"; depth 59 ; known ; synonymous GL192765.1 samtools variation 1383848 1383848 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; non-synonymous GL192765.1 samtools variation 1384465 1384465 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 32 ; unknown ; non-synonymous GL192765.1 samtools variation 1385368 1385368 . . . alleles " C T"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; non-synonymous GL192765.1 samtools variation 1409498 1409498 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL192765.1 samtools variation 1411387 1411387 . . . alleles " T C"; frequencies " 0.338461538461538 0.661538461538462"; depth 65 ; known ; N/A GL192765.1 samtools variation 1413343 1413343 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL192765.1 samtools variation 1415779 1415779 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192765.1 samtools variation 1416686 1416686 . . . alleles " C T"; frequencies " 0.704347826086957 0.291304347826087"; depth 230 ; unknown ; synonymous GL192766.1 samtools variation 21279 21279 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192766.1 samtools variation 55395 55395 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192766.1 samtools variation 79632 79632 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192766.1 samtools variation 81818 81818 . . . alleles " C T"; frequencies " 0.752293577981651 0.247706422018349"; depth 109 ; unknown ; non-synonymous GL192766.1 samtools variation 87316 87316 . . . alleles " G A"; frequencies " 0.672131147540984 0.327868852459016"; depth 122 ; unknown ; N/A GL192766.1 samtools variation 107416 107416 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192766.1 samtools variation 227458 227458 . . . alleles " G T"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; known ; N/A GL192766.1 samtools variation 230447 230447 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL192766.1 samtools variation 230564 230564 . . . alleles " G A"; frequencies " 0.404255319148936 0.595744680851064"; depth 47 ; known ; N/A GL192766.1 samtools variation 230626 230626 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 52 ; known ; N/A GL192766.1 samtools variation 234189 234189 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192766.1 samtools variation 241464 241464 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192766.1 samtools variation 315383 315383 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 104 ; unknown ; N/A GL192766.1 samtools variation 317288 317288 . . . alleles " G C"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; N/A GL192766.1 samtools variation 317340 317340 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192766.1 samtools variation 366026 366026 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192766.1 samtools variation 417005 417005 . . . alleles " A G"; frequencies " 0.450980392156863 0.549019607843137"; depth 51 ; unknown ; non-synonymous GL192766.1 samtools variation 456736 456736 . . . alleles " G A"; frequencies " 0.515873015873016 0.484126984126984"; depth 126 ; unknown ; synonymous GL192766.1 samtools variation 600419 600419 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 54 ; unknown ; N/A GL192766.1 samtools variation 955417 955417 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192766.1 samtools variation 955506 955506 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 20 ; known ; non-synonymous GL192766.1 samtools variation 1101899 1101899 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192766.1 samtools variation 1102231 1102231 . . . alleles " T A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192766.1 samtools variation 1176839 1176839 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192766.1 samtools variation 1195998 1195998 . . . alleles " C A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192766.1 samtools variation 1196048 1196048 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192766.1 samtools variation 1197499 1197499 . . . alleles " C A"; frequencies " 0.595505617977528 0.404494382022472"; depth 89 ; known ; N/A GL192766.1 samtools variation 1197567 1197567 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 90 ; unknown ; N/A GL192766.1 samtools variation 1204745 1204745 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192766.1 samtools variation 1205182 1205182 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192766.1 samtools variation 1207810 1207810 . . . alleles " T C"; frequencies " 0.50561797752809 0.49438202247191"; depth 89 ; known ; non-synonymous GL192766.1 samtools variation 1234845 1234845 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192766.1 samtools variation 1235818 1235818 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL192766.1 samtools variation 1235970 1235970 . . . alleles " C G"; frequencies " 0.592592592592593 0.407407407407407"; depth 54 ; unknown ; N/A GL192766.1 samtools variation 1236617 1236617 . . . alleles " G T"; frequencies " 0.539823008849557 0.460176991150442"; depth 113 ; unknown ; N/A GL192766.1 samtools variation 1236760 1236760 . . . alleles " C T"; frequencies " 0.641509433962264 0.358490566037736"; depth 53 ; unknown ; N/A GL192766.1 samtools variation 1238359 1238359 . . . alleles " G A"; frequencies " 0.508196721311475 0.491803278688525"; depth 61 ; unknown ; N/A GL192766.1 samtools variation 1242422 1242422 . . . alleles " C T"; frequencies " 0.512820512820513 0.487179487179487"; depth 39 ; known ; synonymous GL192766.1 samtools variation 1242753 1242753 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192766.1 samtools variation 1242787 1242787 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 30 ; known ; N/A GL192766.1 samtools variation 1262136 1262136 . . . alleles " C T"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; synonymous GL192766.1 samtools variation 1265837 1265837 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; known ; synonymous GL192766.1 samtools variation 1266682 1266682 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192766.1 samtools variation 1267357 1267357 . . . alleles " C A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; non-synonymous GL192766.1 samtools variation 1267718 1267718 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192766.1 samtools variation 1269499 1269499 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192766.1 samtools variation 1428760 1428760 . . . alleles " C G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192766.1 samtools variation 1429642 1429642 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192766.1 samtools variation 1430825 1430825 . . . alleles " A G"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; known ; N/A GL192766.1 samtools variation 1430951 1430951 . . . alleles " G A"; frequencies " 0.506849315068493 0.493150684931507"; depth 73 ; known ; N/A GL192766.1 samtools variation 1431069 1431069 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 72 ; unknown ; synonymous GL192766.1 samtools variation 1431994 1431994 . . . alleles " G T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192766.1 samtools variation 1432061 1432061 . . . alleles " C G"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL192766.1 samtools variation 1432170 1432170 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192766.1 samtools variation 1433178 1433178 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192767.1 samtools variation 344913 344913 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192767.1 samtools variation 344999 344999 . . . alleles " A C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192767.1 samtools variation 345002 345002 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192767.1 samtools variation 345525 345525 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192767.1 samtools variation 345641 345641 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192767.1 samtools variation 347599 347599 . . . alleles " T C"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL192767.1 samtools variation 347669 347669 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192767.1 samtools variation 348808 348808 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192767.1 samtools variation 348854 348854 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192767.1 samtools variation 349476 349476 . . . alleles " G A"; frequencies " 0.513513513513513 0.486486486486487"; depth 37 ; known ; N/A GL192767.1 samtools variation 350892 350892 . . . alleles " T C"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; N/A GL192767.1 samtools variation 351528 351528 . . . alleles " T G"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192767.1 samtools variation 351552 351552 . . . alleles " G A"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL192767.1 samtools variation 354040 354040 . . . alleles " G A"; frequencies " 0.571428571428571 0.42687074829932"; depth 588 ; unknown ; N/A GL192767.1 samtools variation 354112 354112 . . . alleles " G A"; frequencies " 0.51257096512571 0.48742903487429"; depth 1233 ; unknown ; N/A GL192767.1 samtools variation 354255 354255 . . . alleles " C A"; frequencies " 0.464788732394366 0.535211267605634"; depth 568 ; unknown ; N/A GL192767.1 samtools variation 354489 354489 . . . alleles " A G"; frequencies " 0.453860640301318 0.546139359698682"; depth 531 ; unknown ; N/A GL192767.1 samtools variation 354545 354545 . . . alleles " T A"; frequencies " 0.450617283950617 0.549382716049383"; depth 324 ; unknown ; N/A GL192767.1 samtools variation 354707 354707 . . . alleles " G A"; frequencies " 0.380952380952381 0.619047619047619"; depth 147 ; known ; N/A GL192767.1 samtools variation 354872 354872 . . . alleles " A G"; frequencies " 0.725423728813559 0.274576271186441"; depth 295 ; unknown ; N/A GL192767.1 samtools variation 354967 354967 . . . alleles " C T"; frequencies " 0.566218809980806 0.433781190019194"; depth 521 ; unknown ; N/A GL192767.1 samtools variation 355332 355332 . . . alleles " G T"; frequencies " 0.583881578947368 0.416118421052632"; depth 608 ; known ; N/A GL192767.1 samtools variation 355410 355410 . . . alleles " C T"; frequencies " 0.496124031007752 0.503875968992248"; depth 387 ; unknown ; N/A GL192767.1 samtools variation 355516 355516 . . . alleles " A C"; frequencies " 0.540268456375839 0.459731543624161"; depth 298 ; unknown ; N/A GL192767.1 samtools variation 355664 355664 . . . alleles " G C"; frequencies " 0.484177215189873 0.515822784810127"; depth 316 ; unknown ; N/A GL192767.1 samtools variation 355835 355835 . . . alleles " T C"; frequencies " 0.515815085158151 0.484184914841849"; depth 822 ; unknown ; N/A GL192767.1 samtools variation 355845 355845 . . . alleles " G C"; frequencies " 0.514492753623188 0.485507246376812"; depth 828 ; unknown ; N/A GL192767.1 samtools variation 355943 355943 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 408 ; unknown ; N/A GL192767.1 samtools variation 355969 355969 . . . alleles " C T"; frequencies " 0.560538116591928 0.439461883408072"; depth 446 ; unknown ; N/A GL192767.1 samtools variation 356416 356416 . . . alleles " T A"; frequencies " 0.655677655677656 0.344322344322344"; depth 546 ; unknown ; N/A GL192767.1 samtools variation 356441 356441 . . . alleles " A G"; frequencies " 0.651821862348178 0.345748987854251"; depth 1235 ; unknown ; N/A GL192767.1 samtools variation 356500 356500 . . . alleles " G A"; frequencies " 0.430588235294118 0.569411764705882"; depth 1700 ; known ; N/A GL192767.1 samtools variation 356569 356569 . . . alleles " C T"; frequencies " 0.661148473874806 0.338851526125194"; depth 1933 ; unknown ; N/A GL192767.1 samtools variation 356615 356615 . . . alleles " G A"; frequencies " 0.712899543378995 0.287100456621005"; depth 1752 ; unknown ; N/A GL192767.1 samtools variation 356644 356644 . . . alleles " C A"; frequencies " 0.713063763608087 0.286936236391913"; depth 1286 ; unknown ; N/A GL192767.1 samtools variation 356938 356938 . . . alleles " A G"; frequencies " 0.365779467680608 0.634220532319392"; depth 2630 ; known ; synonymous GL192767.1 samtools variation 357638 357638 . . . alleles " C T"; frequencies " 0.627450980392157 0.372549019607843"; depth 51 ; known ; N/A GL192767.1 samtools variation 358583 358583 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL192767.1 samtools variation 360040 360040 . . . alleles " G A"; frequencies " 0.775 0.225"; depth 40 ; unknown ; N/A GL192767.1 samtools variation 360908 360908 . . . alleles " C T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192767.1 samtools variation 361048 361048 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192767.1 samtools variation 361228 361228 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192767.1 samtools variation 361566 361566 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192767.1 samtools variation 368262 368262 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192767.1 samtools variation 368302 368302 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL192767.1 samtools variation 371723 371723 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192767.1 samtools variation 371735 371735 . . . alleles " A C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192767.1 samtools variation 374862 374862 . . . alleles " G A"; frequencies " 0.564102564102564 0.435897435897436"; depth 39 ; known ; N/A GL192767.1 samtools variation 375080 375080 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192767.1 samtools variation 375644 375644 . . . alleles " G A"; frequencies " 0.450199203187251 0.549800796812749"; depth 251 ; known ; N/A GL192767.1 samtools variation 376661 376661 . . . alleles " C T"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL192767.1 samtools variation 381282 381282 . . . alleles " T A"; frequencies " 0.421052631578947 0.578947368421053"; depth 57 ; known ; N/A GL192767.1 samtools variation 382060 382060 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192767.1 samtools variation 382219 382219 . . . alleles " A G"; frequencies " 0.706766917293233 0.293233082706767"; depth 133 ; unknown ; synonymous GL192767.1 samtools variation 382372 382372 . . . alleles " C T"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL192767.1 samtools variation 382406 382406 . . . alleles " G A"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; N/A GL192767.1 samtools variation 382823 382823 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 120 ; known ; non-synonymous GL192767.1 samtools variation 383277 383277 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 32 ; unknown ; N/A GL192767.1 samtools variation 383296 383296 . . . alleles " G A"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; N/A GL192767.1 samtools variation 383429 383429 . . . alleles " G C"; frequencies " 0.275 0.725"; depth 40 ; unknown ; N/A GL192767.1 samtools variation 383936 383936 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192767.1 samtools variation 384214 384214 . . . alleles " A G"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192767.1 samtools variation 384559 384559 . . . alleles " G A"; frequencies " 0.44 0.56"; depth 50 ; unknown ; N/A GL192767.1 samtools variation 384647 384647 . . . alleles " T C"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL192767.1 samtools variation 384759 384759 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192767.1 samtools variation 384851 384851 . . . alleles " G A"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL192767.1 samtools variation 385735 385735 . . . alleles " T C"; frequencies " 0.371428571428571 0.628571428571429"; depth 35 ; unknown ; N/A GL192767.1 samtools variation 385868 385868 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192767.1 samtools variation 385907 385907 . . . alleles " G T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192767.1 samtools variation 386065 386065 . . . alleles " T C"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; known ; N/A GL192767.1 samtools variation 386159 386159 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192767.1 samtools variation 386284 386284 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 32 ; unknown ; N/A GL192767.1 samtools variation 386365 386365 . . . alleles " A G"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192767.1 samtools variation 386420 386420 . . . alleles " T G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192767.1 samtools variation 386441 386441 . . . alleles " T G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192767.1 samtools variation 387015 387015 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL192767.1 samtools variation 387044 387044 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192767.1 samtools variation 391002 391002 . . . alleles " T C"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; known ; N/A GL192767.1 samtools variation 397716 397716 . . . alleles " A G"; frequencies " 0.431372549019608 0.568627450980392"; depth 51 ; known ; N/A GL192767.1 samtools variation 399467 399467 . . . alleles " C A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192767.1 samtools variation 400576 400576 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; known ; N/A GL192767.1 samtools variation 403802 403802 . . . alleles " C T"; frequencies " 0.66875 0.33125"; depth 160 ; unknown ; N/A GL192767.1 samtools variation 405028 405028 . . . alleles " A G"; frequencies " 0.320512820512821 0.67948717948718"; depth 78 ; known ; N/A GL192767.1 samtools variation 406858 406858 . . . alleles " G T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192767.1 samtools variation 407219 407219 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 39 ; known ; N/A GL192767.1 samtools variation 412565 412565 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192767.1 samtools variation 412596 412596 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192767.1 samtools variation 413827 413827 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192767.1 samtools variation 418558 418558 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192767.1 samtools variation 431187 431187 . . . alleles " C G"; frequencies " 0.5875 0.4125"; depth 80 ; known ; N/A GL192767.1 samtools variation 432792 432792 . . . alleles " A T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192767.1 samtools variation 438219 438219 . . . alleles " T C"; frequencies " 0.241379310344828 0.758620689655172"; depth 29 ; known ; N/A GL192767.1 samtools variation 439944 439944 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192767.1 samtools variation 441349 441349 . . . alleles " A G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL192767.1 samtools variation 623584 623584 . . . alleles " A G"; frequencies " 0.622641509433962 0.377358490566038"; depth 106 ; unknown ; N/A GL192767.1 samtools variation 643350 643350 . . . alleles " C T"; frequencies " 0.73469387755102 0.26530612244898"; depth 49 ; unknown ; synonymous GL192767.1 samtools variation 754546 754546 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192767.1 samtools variation 987483 987483 . . . alleles " A G"; frequencies " 0.403333333333333 0.596666666666667"; depth 300 ; unknown ; synonymous GL192767.1 samtools variation 1265508 1265508 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 28 ; known ; N/A GL192767.1 samtools variation 1265666 1265666 . . . alleles " G A"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; known ; N/A GL192767.1 samtools variation 1299401 1299401 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; N/A GL192767.1 samtools variation 1301342 1301342 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192767.1 samtools variation 1445961 1445961 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192768.1 samtools variation 188711 188711 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192768.1 samtools variation 199144 199144 . . . alleles " A T"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL192768.1 samtools variation 246892 246892 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192768.1 samtools variation 248339 248339 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; known ; N/A GL192768.1 samtools variation 248750 248750 . . . alleles " T A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192768.1 samtools variation 249008 249008 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192768.1 samtools variation 266683 266683 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192768.1 samtools variation 268624 268624 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192768.1 samtools variation 269237 269237 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; known ; N/A GL192768.1 samtools variation 271909 271909 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192768.1 samtools variation 271958 271958 . . . alleles " C A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192768.1 samtools variation 274070 274070 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192768.1 samtools variation 275032 275032 . . . alleles " A T"; frequencies " 0.361111111111111 0.638888888888889"; depth 36 ; known ; N/A GL192768.1 samtools variation 277116 277116 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192768.1 samtools variation 280883 280883 . . . alleles " C T"; frequencies " 0.793388429752066 0.206611570247934"; depth 121 ; unknown ; N/A GL192768.1 samtools variation 297593 297593 . . . alleles " A G"; frequencies " 0.223880597014925 0.776119402985075"; depth 67 ; known ; N/A GL192768.1 samtools variation 297810 297810 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL192768.1 samtools variation 297823 297823 . . . alleles " A G"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL192768.1 samtools variation 297828 297828 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 24 ; known ; N/A GL192768.1 samtools variation 297885 297885 . . . alleles " C A"; frequencies " 0.771929824561403 0.228070175438596"; depth 57 ; known ; N/A GL192768.1 samtools variation 357576 357576 . . . alleles " A T"; frequencies " 0.596491228070175 0.403508771929825"; depth 57 ; unknown ; N/A GL192768.1 samtools variation 357897 357897 . . . alleles " C T"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; known ; N/A GL192768.1 samtools variation 359471 359471 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192768.1 samtools variation 359614 359614 . . . alleles " C G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192768.1 samtools variation 360502 360502 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 35 ; known ; N/A GL192768.1 samtools variation 360507 360507 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; known ; N/A GL192768.1 samtools variation 730955 730955 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192768.1 samtools variation 771256 771256 . . . alleles " G A"; frequencies " 0.713414634146341 0.286585365853659"; depth 164 ; unknown ; N/A GL192768.1 samtools variation 771730 771730 . . . alleles " A G"; frequencies " 0.24390243902439 0.75609756097561"; depth 82 ; unknown ; N/A GL192768.1 samtools variation 771750 771750 . . . alleles " G A"; frequencies " 0.736434108527132 0.263565891472868"; depth 258 ; unknown ; N/A GL192768.1 samtools variation 772264 772264 . . . alleles " T C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192768.1 samtools variation 773416 773416 . . . alleles " C G"; frequencies " 0.302325581395349 0.697674418604651"; depth 43 ; known ; N/A GL192768.1 samtools variation 773893 773893 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192768.1 samtools variation 774048 774048 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192768.1 samtools variation 774146 774146 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192768.1 samtools variation 774204 774204 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192768.1 samtools variation 776524 776524 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192768.1 samtools variation 778198 778198 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 38 ; unknown ; synonymous GL192768.1 samtools variation 788595 788595 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192768.1 samtools variation 790149 790149 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192768.1 samtools variation 799971 799971 . . . alleles " C T"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL192768.1 samtools variation 800788 800788 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192768.1 samtools variation 808509 808509 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 66 ; unknown ; N/A GL192768.1 samtools variation 808570 808570 . . . alleles " C G"; frequencies " 0.597222222222222 0.402777777777778"; depth 72 ; unknown ; N/A GL192768.1 samtools variation 808703 808703 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192768.1 samtools variation 808732 808732 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192768.1 samtools variation 1044278 1044278 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL192768.1 samtools variation 1045724 1045724 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192768.1 samtools variation 1216904 1216904 . . . alleles " G A"; frequencies " 0.48 0.52"; depth 25 ; unknown ; synonymous GL192768.1 samtools variation 1217654 1217654 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; synonymous GL192768.1 samtools variation 1217827 1217827 . . . alleles " A T"; frequencies " 0.454545454545455 0.5"; depth 22 ; unknown ; N/A GL192768.1 samtools variation 1217928 1217928 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192768.1 samtools variation 1219044 1219044 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL192768.1 samtools variation 1219187 1219187 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192768.1 samtools variation 1219230 1219230 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192768.1 samtools variation 1341456 1341456 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192768.1 samtools variation 1351513 1351513 . . . alleles " T A"; frequencies " 0.275 0.725"; depth 40 ; unknown ; N/A GL192768.1 samtools variation 1367626 1367626 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 25 ; known ; N/A GL192768.1 samtools variation 1368059 1368059 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192769.1 samtools variation 141984 141984 . . . alleles " G T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192769.1 samtools variation 210491 210491 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; synonymous GL192769.1 samtools variation 217787 217787 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192769.1 samtools variation 225575 225575 . . . alleles " C A"; frequencies " 0.568627450980392 0.431372549019608"; depth 51 ; unknown ; N/A GL192769.1 samtools variation 240493 240493 . . . alleles " C G"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192769.1 samtools variation 243226 243226 . . . alleles " G A"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL192769.1 samtools variation 243249 243249 . . . alleles " G A"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; N/A GL192769.1 samtools variation 243322 243322 . . . alleles " A T"; frequencies " 0.239130434782609 0.760869565217391"; depth 46 ; unknown ; N/A GL192769.1 samtools variation 250035 250035 . . . alleles " G A"; frequencies " 0.234375 0.765625"; depth 128 ; unknown ; N/A GL192769.1 samtools variation 251372 251372 . . . alleles " C T"; frequencies " 0.756410256410256 0.243589743589744"; depth 78 ; unknown ; N/A GL192769.1 samtools variation 253362 253362 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192769.1 samtools variation 257311 257311 . . . alleles " C T"; frequencies " 0.768361581920904 0.231638418079096"; depth 177 ; known ; N/A GL192769.1 samtools variation 259384 259384 . . . alleles " G A"; frequencies " 0.349397590361446 0.650602409638554"; depth 83 ; known ; N/A GL192769.1 samtools variation 261992 261992 . . . alleles " C A"; frequencies " 0.311475409836066 0.688524590163934"; depth 61 ; known ; N/A GL192769.1 samtools variation 262395 262395 . . . alleles " C G"; frequencies " 0.205479452054795 0.794520547945205"; depth 73 ; known ; N/A GL192769.1 samtools variation 269447 269447 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 40 ; unknown ; N/A GL192769.1 samtools variation 270544 270544 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL192769.1 samtools variation 274124 274124 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 54 ; unknown ; N/A GL192769.1 samtools variation 702828 702828 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192769.1 samtools variation 720882 720882 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL192769.1 samtools variation 724694 724694 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192769.1 samtools variation 724999 724999 . . . alleles " A G"; frequencies " 0.713114754098361 0.286885245901639"; depth 122 ; unknown ; N/A GL192769.1 samtools variation 928364 928364 . . . alleles " A G"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192769.1 samtools variation 936726 936726 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192769.1 samtools variation 941196 941196 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192769.1 samtools variation 1066628 1066628 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192770.1 samtools variation 534634 534634 . . . alleles " T C"; frequencies " 0.414634146341463 0.585365853658537"; depth 41 ; known ; N/A GL192770.1 samtools variation 534898 534898 . . . alleles " C A"; frequencies " 0.614754098360656 0.385245901639344"; depth 122 ; unknown ; N/A GL192770.1 samtools variation 1090980 1090980 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 51 ; unknown ; N/A GL192770.1 samtools variation 1091049 1091049 . . . alleles " A G"; frequencies " 0.254545454545455 0.727272727272727"; depth 55 ; known ; N/A GL192770.1 samtools variation 1141813 1141813 . . . alleles " G A"; frequencies " 0.30188679245283 0.69811320754717"; depth 53 ; unknown ; N/A GL192770.1 samtools variation 1141864 1141864 . . . alleles " C T"; frequencies " 0.557377049180328 0.442622950819672"; depth 61 ; unknown ; N/A GL192770.1 samtools variation 1141908 1141908 . . . alleles " G A"; frequencies " 0.746031746031746 0.253968253968254"; depth 63 ; unknown ; N/A GL192770.1 samtools variation 1378737 1378737 . . . alleles " C T"; frequencies " 0.74468085106383 0.25531914893617"; depth 47 ; unknown ; synonymous GL192771.1 samtools variation 1107329 1107329 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192771.1 samtools variation 1209643 1209643 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192771.1 samtools variation 1212149 1212149 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192771.1 samtools variation 1219488 1219488 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192771.1 samtools variation 1220352 1220352 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192771.1 samtools variation 1221298 1221298 . . . alleles " A G"; frequencies " 0.259067357512953 0.740932642487047"; depth 193 ; known ; synonymous GL192771.1 samtools variation 1223501 1223501 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192771.1 samtools variation 1223905 1223905 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192771.1 samtools variation 1235932 1235932 . . . alleles " G T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192771.1 samtools variation 1291549 1291549 . . . alleles " C T"; frequencies " 0.797619047619048 0.202380952380952"; depth 84 ; known ; synonymous GL192772.1 samtools variation 161222 161222 . . . alleles " T C"; frequencies " 0.410714285714286 0.589285714285714"; depth 56 ; known ; synonymous GL192772.1 samtools variation 164685 164685 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; non-synonymous GL192772.1 samtools variation 164923 164923 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; non-synonymous GL192772.1 samtools variation 737344 737344 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192772.1 samtools variation 737425 737425 . . . alleles " T A"; frequencies " 0.716666666666667 0.283333333333333"; depth 120 ; unknown ; N/A GL192772.1 samtools variation 737686 737686 . . . alleles " G A"; frequencies " 0.22093023255814 0.779069767441861"; depth 86 ; unknown ; N/A GL192772.1 samtools variation 738043 738043 . . . alleles " T C"; frequencies " 0.230337078651685 0.769662921348315"; depth 178 ; unknown ; N/A GL192772.1 samtools variation 738174 738174 . . . alleles " C T"; frequencies " 0.247933884297521 0.752066115702479"; depth 121 ; unknown ; N/A GL192772.1 samtools variation 738185 738185 . . . alleles " T C"; frequencies " 0.245762711864407 0.754237288135593"; depth 118 ; unknown ; N/A GL192772.1 samtools variation 738267 738267 . . . alleles " A T"; frequencies " 0.208 0.792"; depth 125 ; unknown ; N/A GL192772.1 samtools variation 738378 738378 . . . alleles " G A"; frequencies " 0.201438848920863 0.798561151079137"; depth 139 ; unknown ; N/A GL192772.1 samtools variation 738427 738427 . . . alleles " T C"; frequencies " 0.200772200772201 0.799227799227799"; depth 259 ; unknown ; N/A GL192772.1 samtools variation 739903 739903 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 85 ; unknown ; N/A GL192772.1 samtools variation 740431 740431 . . . alleles " A G"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; unknown ; N/A GL192772.1 samtools variation 740631 740631 . . . alleles " G A"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192772.1 samtools variation 740752 740752 . . . alleles " C T"; frequencies " 0.236842105263158 0.763157894736842"; depth 38 ; unknown ; N/A GL192772.1 samtools variation 741443 741443 . . . alleles " A G"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; unknown ; N/A GL192772.1 samtools variation 741481 741481 . . . alleles " G T"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; unknown ; N/A GL192772.1 samtools variation 741794 741794 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192772.1 samtools variation 741805 741805 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192772.1 samtools variation 742715 742715 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192772.1 samtools variation 744430 744430 . . . alleles " G A"; frequencies " 0.426666666666667 0.573333333333333"; depth 75 ; unknown ; synonymous GL192772.1 samtools variation 745104 745104 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192772.1 samtools variation 1239609 1239609 . . . alleles " T C"; frequencies " 0.789915966386555 0.210084033613445"; depth 119 ; known ; N/A GL192772.1 samtools variation 1291111 1291111 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; known ; N/A GL192773.1 samtools variation 53715 53715 . . . alleles " C T"; frequencies " 0.45 0.55"; depth 40 ; unknown ; non-synonymous GL192773.1 samtools variation 78227 78227 . . . alleles " T C"; frequencies " 0.464285714285714 0.535714285714286"; depth 56 ; known ; N/A GL192773.1 samtools variation 88233 88233 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192773.1 samtools variation 103875 103875 . . . alleles " G A"; frequencies " 0.740105540897098 0.259894459102902"; depth 758 ; unknown ; N/A GL192773.1 samtools variation 104913 104913 . . . alleles " T C"; frequencies " 0.783396946564885 0.216603053435115"; depth 1048 ; unknown ; N/A GL192773.1 samtools variation 106961 106961 . . . alleles " G C"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL192773.1 samtools variation 108163 108163 . . . alleles " G A"; frequencies " 0.771428571428571 0.228571428571429"; depth 70 ; unknown ; N/A GL192773.1 samtools variation 121632 121632 . . . alleles " G A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192773.1 samtools variation 868216 868216 . . . alleles " A C"; frequencies " 0.495575221238938 0.504424778761062"; depth 113 ; known ; N/A GL192775.1 samtools variation 302845 302845 . . . alleles " G A"; frequencies " 0.743589743589744 0.256410256410256"; depth 78 ; unknown ; N/A GL192775.1 samtools variation 316899 316899 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192775.1 samtools variation 323259 323259 . . . alleles " G A"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; synonymous GL192775.1 samtools variation 462349 462349 . . . alleles " G A"; frequencies " 0.756032171581769 0.243967828418231"; depth 373 ; unknown ; N/A GL192775.1 samtools variation 462834 462834 . . . alleles " A G"; frequencies " 0.758177570093458 0.241822429906542"; depth 856 ; unknown ; N/A GL192775.1 samtools variation 463183 463183 . . . alleles " C T"; frequencies " 0.766233766233766 0.233766233766234"; depth 385 ; unknown ; N/A GL192775.1 samtools variation 463577 463577 . . . alleles " C T"; frequencies " 0.736947791164659 0.263052208835341"; depth 498 ; unknown ; N/A GL192775.1 samtools variation 463669 463669 . . . alleles " G A"; frequencies " 0.772151898734177 0.227848101265823"; depth 316 ; unknown ; N/A GL192775.1 samtools variation 463725 463725 . . . alleles " C G"; frequencies " 0.226415094339623 0.773584905660377"; depth 212 ; unknown ; N/A GL192775.1 samtools variation 464156 464156 . . . alleles " A G"; frequencies " 0.731012658227848 0.268987341772152"; depth 316 ; unknown ; N/A GL192775.1 samtools variation 465221 465221 . . . alleles " G A"; frequencies " 0.646341463414634 0.353658536585366"; depth 82 ; unknown ; N/A GL192775.1 samtools variation 465290 465290 . . . alleles " T C"; frequencies " 0.760869565217391 0.239130434782609"; depth 46 ; unknown ; N/A GL192775.1 samtools variation 465617 465617 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192775.1 samtools variation 468380 468380 . . . alleles " C A"; frequencies " 0.775 0.225"; depth 80 ; unknown ; N/A GL192775.1 samtools variation 468933 468933 . . . alleles " G A"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; unknown ; N/A GL192775.1 samtools variation 468988 468988 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 50 ; unknown ; N/A GL192775.1 samtools variation 469177 469177 . . . alleles " T G"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; unknown ; N/A GL192775.1 samtools variation 477368 477368 . . . alleles " T C"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; unknown ; N/A GL192775.1 samtools variation 479332 479332 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; N/A GL192775.1 samtools variation 480774 480774 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL192775.1 samtools variation 493576 493576 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL192775.1 samtools variation 493946 493946 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192775.1 samtools variation 500319 500319 . . . alleles " G T"; frequencies " 0.566292134831461 0.433707865168539"; depth 445 ; unknown ; synonymous GL192775.1 samtools variation 501414 501414 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192775.1 samtools variation 533299 533299 . . . alleles " C T"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; unknown ; N/A GL192775.1 samtools variation 537277 537277 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192775.1 samtools variation 776060 776060 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL192775.1 samtools variation 783781 783781 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192775.1 samtools variation 787429 787429 . . . alleles " C T"; frequencies " 0.207650273224044 0.792349726775956"; depth 183 ; unknown ; N/A GL192775.1 samtools variation 787721 787721 . . . alleles " C T"; frequencies " 0.688888888888889 0.311111111111111"; depth 45 ; unknown ; N/A GL192775.1 samtools variation 797856 797856 . . . alleles " C T"; frequencies " 0.510869565217391 0.489130434782609"; depth 92 ; unknown ; synonymous GL192775.1 samtools variation 1324303 1324303 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL192775.1 samtools variation 1325197 1325197 . . . alleles " T G"; frequencies " 0.303571428571429 0.696428571428571"; depth 56 ; unknown ; N/A GL192775.1 samtools variation 1325212 1325212 . . . alleles " C T"; frequencies " 0.261538461538462 0.738461538461539"; depth 65 ; unknown ; N/A GL192775.1 samtools variation 1338860 1338860 . . . alleles " C T"; frequencies " 0.759259259259259 0.240740740740741"; depth 216 ; unknown ; synonymous GL192775.1 samtools variation 1354354 1354354 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192775.1 samtools variation 1374274 1374274 . . . alleles " A G"; frequencies " 0.300380228136882 0.699619771863118"; depth 263 ; known ; non-synonymous GL192775.1 samtools variation 1376404 1376404 . . . alleles " G A"; frequencies " 0.793991416309013 0.206008583690987"; depth 233 ; unknown ; non-synonymous GL192775.1 samtools variation 1383039 1383039 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192775.1 samtools variation 1396521 1396521 . . . alleles " T C"; frequencies " 0.776119402985075 0.223880597014925"; depth 134 ; unknown ; synonymous GL192775.1 samtools variation 1400457 1400457 . . . alleles " A G"; frequencies " 0.76271186440678 0.23728813559322"; depth 118 ; known ; synonymous GL192775.1 samtools variation 1403528 1403528 . . . alleles " T C"; frequencies " 0.794520547945205 0.205479452054795"; depth 73 ; unknown ; N/A GL192775.1 samtools variation 1403861 1403861 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192775.1 samtools variation 1404824 1404824 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192775.1 samtools variation 1405230 1405230 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL192775.1 samtools variation 1406066 1406066 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; known ; N/A GL192775.1 samtools variation 1410194 1410194 . . . alleles " A G"; frequencies " 0.797297297297297 0.202702702702703"; depth 222 ; unknown ; synonymous GL192775.1 samtools variation 1418299 1418299 . . . alleles " G A"; frequencies " 0.445086705202312 0.554913294797688"; depth 173 ; unknown ; N/A GL192775.1 samtools variation 1418313 1418313 . . . alleles " G A"; frequencies " 0.419512195121951 0.580487804878049"; depth 205 ; unknown ; N/A GL192776.1 samtools variation 172735 172735 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; synonymous GL192776.1 samtools variation 172873 172873 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; synonymous GL192776.1 samtools variation 172912 172912 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; synonymous GL192776.1 samtools variation 609253 609253 . . . alleles " G A"; frequencies " 0.436440677966102 0.563559322033898"; depth 708 ; unknown ; N/A GL192776.1 samtools variation 609628 609628 . . . alleles " C T"; frequencies " 0.643478260869565 0.356521739130435"; depth 805 ; unknown ; N/A GL192776.1 samtools variation 609859 609859 . . . alleles " T C"; frequencies " 0.653846153846154 0.346153846153846"; depth 468 ; unknown ; N/A GL192776.1 samtools variation 609892 609892 . . . alleles " T C"; frequencies " 0.554089709762533 0.445910290237467"; depth 379 ; unknown ; N/A GL192776.1 samtools variation 610169 610169 . . . alleles " C T"; frequencies " 0.688073394495413 0.311926605504587"; depth 218 ; unknown ; N/A GL192776.1 samtools variation 610684 610684 . . . alleles " A G"; frequencies " 0.755760368663594 0.244239631336406"; depth 217 ; unknown ; N/A GL192776.1 samtools variation 611170 611170 . . . alleles " G A"; frequencies " 0.677966101694915 0.322033898305085"; depth 177 ; unknown ; N/A GL192776.1 samtools variation 611198 611198 . . . alleles " C T"; frequencies " 0.650793650793651 0.349206349206349"; depth 126 ; unknown ; N/A GL192776.1 samtools variation 611806 611806 . . . alleles " G A"; frequencies " 0.552380952380952 0.447619047619048"; depth 105 ; unknown ; N/A GL192776.1 samtools variation 611906 611906 . . . alleles " C T"; frequencies " 0.493670886075949 0.506329113924051"; depth 79 ; unknown ; N/A GL192776.1 samtools variation 612029 612029 . . . alleles " A G"; frequencies " 0.420289855072464 0.579710144927536"; depth 69 ; unknown ; N/A GL192776.1 samtools variation 612370 612370 . . . alleles " A G"; frequencies " 0.508403361344538 0.491596638655462"; depth 238 ; unknown ; N/A GL192776.1 samtools variation 614545 614545 . . . alleles " C G"; frequencies " 0.696774193548387 0.303225806451613"; depth 155 ; unknown ; synonymous GL192776.1 samtools variation 622784 622784 . . . alleles " G A"; frequencies " 0.317460317460317 0.682539682539683"; depth 252 ; unknown ; synonymous GL192776.1 samtools variation 636832 636832 . . . alleles " G T"; frequencies " 0.640449438202247 0.359550561797753"; depth 356 ; unknown ; synonymous GL192776.1 samtools variation 818302 818302 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192776.1 samtools variation 818479 818479 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 55 ; unknown ; N/A GL192776.1 samtools variation 818972 818972 . . . alleles " A T"; frequencies " 0.705882352941177 0.294117647058824"; depth 102 ; unknown ; N/A GL192776.1 samtools variation 887828 887828 . . . alleles " A G"; frequencies " 0.554744525547445 0.445255474452555"; depth 137 ; unknown ; synonymous GL192776.1 samtools variation 887912 887912 . . . alleles " G A"; frequencies " 0.630769230769231 0.369230769230769"; depth 65 ; unknown ; synonymous GL192776.1 samtools variation 899494 899494 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192776.1 samtools variation 900628 900628 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 84 ; unknown ; N/A GL192776.1 samtools variation 902596 902596 . . . alleles " G C"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; unknown ; N/A GL192776.1 samtools variation 902618 902618 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL192776.1 samtools variation 905141 905141 . . . alleles " G A"; frequencies " 0.393939393939394 0.606060606060606"; depth 66 ; unknown ; N/A GL192776.1 samtools variation 905379 905379 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 36 ; unknown ; N/A GL192776.1 samtools variation 905500 905500 . . . alleles " G T"; frequencies " 0.444444444444444 0.555555555555556"; depth 54 ; unknown ; N/A GL192776.1 samtools variation 905776 905776 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; unknown ; N/A GL192776.1 samtools variation 905885 905885 . . . alleles " G T"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; unknown ; N/A GL192776.1 samtools variation 906108 906108 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192776.1 samtools variation 906267 906267 . . . alleles " G A"; frequencies " 0.351351351351351 0.648648648648649"; depth 37 ; unknown ; N/A GL192776.1 samtools variation 906416 906416 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192776.1 samtools variation 906509 906509 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192776.1 samtools variation 906618 906618 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192776.1 samtools variation 1060000 1060000 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; synonymous GL192776.1 samtools variation 1081458 1081458 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; synonymous GL192776.1 samtools variation 1082564 1082564 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; synonymous GL192776.1 samtools variation 1307706 1307706 . . . alleles " G A"; frequencies " 0.441176470588235 0.558823529411765"; depth 68 ; unknown ; synonymous GL192776.1 samtools variation 1308460 1308460 . . . alleles " G A"; frequencies " 0.694117647058824 0.305882352941176"; depth 85 ; unknown ; synonymous GL192776.1 samtools variation 1308575 1308575 . . . alleles " T C"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL192776.1 samtools variation 1310872 1310872 . . . alleles " T G"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL192776.1 samtools variation 1311932 1311932 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192776.1 samtools variation 1312169 1312169 . . . alleles " A C"; frequencies " 0.757246376811594 0.242753623188406"; depth 276 ; unknown ; synonymous GL192776.1 samtools variation 1312209 1312209 . . . alleles " G C"; frequencies " 0.724137931034483 0.275862068965517"; depth 261 ; unknown ; N/A GL192776.1 samtools variation 1312316 1312316 . . . alleles " T C"; frequencies " 0.730434782608696 0.269565217391304"; depth 230 ; unknown ; N/A GL192776.1 samtools variation 1312338 1312338 . . . alleles " C T"; frequencies " 0.786666666666667 0.213333333333333"; depth 150 ; unknown ; N/A GL192776.1 samtools variation 1312419 1312419 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 196 ; unknown ; N/A GL192776.1 samtools variation 1312424 1312424 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 196 ; unknown ; N/A GL192776.1 samtools variation 1312489 1312489 . . . alleles " C T"; frequencies " 0.663551401869159 0.336448598130841"; depth 321 ; unknown ; N/A GL192776.1 samtools variation 1312566 1312566 . . . alleles " A G"; frequencies " 0.675544794188862 0.324455205811138"; depth 413 ; unknown ; N/A GL192776.1 samtools variation 1313102 1313102 . . . alleles " G C"; frequencies " 0.653144016227181 0.346855983772819"; depth 493 ; unknown ; N/A GL192776.1 samtools variation 1314118 1314118 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; unknown ; N/A GL192776.1 samtools variation 1314224 1314224 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL192776.1 samtools variation 1314535 1314535 . . . alleles " A G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192776.1 samtools variation 1314919 1314919 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; known ; N/A GL192776.1 samtools variation 1315156 1315156 . . . alleles " C G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192776.1 samtools variation 1317136 1317136 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192776.1 samtools variation 1357761 1357761 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; non-synonymous GL192776.1 samtools variation 1390131 1390131 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192776.1 samtools variation 1390264 1390264 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192776.1 samtools variation 1392561 1392561 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192776.1 samtools variation 1393967 1393967 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192776.1 samtools variation 1393976 1393976 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192776.1 samtools variation 1394052 1394052 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192776.1 samtools variation 1394564 1394564 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192776.1 samtools variation 1395571 1395571 . . . alleles " C A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192776.1 samtools variation 1396014 1396014 . . . alleles " G A"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192776.1 samtools variation 1396066 1396066 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192776.1 samtools variation 1396152 1396152 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192776.1 samtools variation 1396361 1396361 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192776.1 samtools variation 1396365 1396365 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192776.1 samtools variation 1398128 1398128 . . . alleles " T C"; frequencies " 0.529865125240848 0.470134874759152"; depth 519 ; unknown ; N/A GL192776.1 samtools variation 1398447 1398447 . . . alleles " G A"; frequencies " 0.551601423487544 0.448398576512456"; depth 281 ; known ; N/A GL192776.1 samtools variation 1398572 1398572 . . . alleles " C T"; frequencies " 0.617283950617284 0.382716049382716"; depth 324 ; unknown ; N/A GL192776.1 samtools variation 1398660 1398660 . . . alleles " C T"; frequencies " 0.464135021097046 0.535864978902954"; depth 237 ; unknown ; N/A GL192776.1 samtools variation 1398882 1398882 . . . alleles " G A"; frequencies " 0.556701030927835 0.443298969072165"; depth 194 ; unknown ; N/A GL192776.1 samtools variation 1399119 1399119 . . . alleles " G A"; frequencies " 0.780821917808219 0.219178082191781"; depth 292 ; unknown ; N/A GL192776.1 samtools variation 1399555 1399555 . . . alleles " T C"; frequencies " 0.756451612903226 0.243548387096774"; depth 620 ; unknown ; N/A GL192776.1 samtools variation 1399632 1399632 . . . alleles " G A"; frequencies " 0.755386565272497 0.244613434727503"; depth 789 ; unknown ; N/A GL192776.1 samtools variation 1399638 1399638 . . . alleles " G A"; frequencies " 0.737513283740701 0.262486716259299"; depth 941 ; unknown ; N/A GL192776.1 samtools variation 1399938 1399938 . . . alleles " G A"; frequencies " 0.471428571428571 0.528571428571429"; depth 350 ; unknown ; N/A GL192776.1 samtools variation 1400021 1400021 . . . alleles " A G"; frequencies " 0.70125786163522 0.29874213836478"; depth 318 ; unknown ; N/A GL192776.1 samtools variation 1400447 1400447 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192776.1 samtools variation 1402178 1402178 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192776.1 samtools variation 1402296 1402296 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192776.1 samtools variation 1402782 1402782 . . . alleles " T G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192776.1 samtools variation 1402970 1402970 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192776.1 samtools variation 1403097 1403097 . . . alleles " C T"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192776.1 samtools variation 1403172 1403172 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192776.1 samtools variation 1405433 1405433 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192776.1 samtools variation 1405622 1405622 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 98 ; unknown ; synonymous GL192776.1 samtools variation 1405829 1405829 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 140 ; unknown ; synonymous GL192776.1 samtools variation 1406519 1406519 . . . alleles " G A"; frequencies " 0.686390532544379 0.313609467455621"; depth 169 ; unknown ; non-synonymous GL192776.1 samtools variation 1409665 1409665 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192776.1 samtools variation 1414826 1414826 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192776.1 samtools variation 1414983 1414983 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192776.1 samtools variation 1415346 1415346 . . . alleles " A G"; frequencies " 0.595744680851064 0.404255319148936"; depth 94 ; unknown ; synonymous GL192776.1 samtools variation 1415640 1415640 . . . alleles " A T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192776.1 samtools variation 1415924 1415924 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192776.1 samtools variation 1415946 1415946 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192776.1 samtools variation 1416838 1416838 . . . alleles " A C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192776.1 samtools variation 1417059 1417059 . . . alleles " C T"; frequencies " 0.654088050314465 0.345911949685535"; depth 159 ; known ; N/A GL192776.1 samtools variation 1417084 1417084 . . . alleles " C T"; frequencies " 0.784810126582278 0.215189873417722"; depth 158 ; unknown ; N/A GL192776.1 samtools variation 1417160 1417160 . . . alleles " T C"; frequencies " 0.651162790697674 0.348837209302326"; depth 43 ; unknown ; N/A GL192776.1 samtools variation 1417509 1417509 . . . alleles " A G"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; N/A GL192776.1 samtools variation 1417595 1417595 . . . alleles " G A"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL192776.1 samtools variation 1418067 1418067 . . . alleles " A C"; frequencies " 0.661290322580645 0.338709677419355"; depth 62 ; unknown ; non-synonymous GL192776.1 samtools variation 1418093 1418093 . . . alleles " A C"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; synonymous GL192776.1 samtools variation 1418287 1418287 . . . alleles " G A"; frequencies " 0.303030303030303 0.696969696969697"; depth 33 ; unknown ; N/A GL192776.1 samtools variation 1418479 1418479 . . . alleles " A G"; frequencies " 0.558441558441558 0.441558441558442"; depth 77 ; unknown ; N/A GL192776.1 samtools variation 1418584 1418584 . . . alleles " G A"; frequencies " 0.377777777777778 0.622222222222222"; depth 90 ; unknown ; N/A GL192776.1 samtools variation 1421645 1421645 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192776.1 samtools variation 1421696 1421696 . . . alleles " C G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192776.1 samtools variation 1421720 1421720 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192776.1 samtools variation 1422337 1422337 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192776.1 samtools variation 1422584 1422584 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192776.1 samtools variation 1422926 1422926 . . . alleles " A C"; frequencies " 0.732758620689655 0.267241379310345"; depth 116 ; unknown ; synonymous GL192776.1 samtools variation 1423192 1423192 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL192776.1 samtools variation 1423798 1423798 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192776.1 samtools variation 1424013 1424013 . . . alleles " A G"; frequencies " 0.672897196261682 0.327102803738318"; depth 107 ; unknown ; non-synonymous GL192776.1 samtools variation 1424258 1424258 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192776.1 samtools variation 1424890 1424890 . . . alleles " A G"; frequencies " 0.397905759162304 0.602094240837696"; depth 191 ; unknown ; non-synonymous GL192776.1 samtools variation 1426922 1426922 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 66 ; unknown ; N/A GL192776.1 samtools variation 1427379 1427379 . . . alleles " G C"; frequencies " 0.581818181818182 0.414545454545455"; depth 275 ; unknown ; N/A GL192777.1 samtools variation 545091 545091 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192777.1 samtools variation 545363 545363 . . . alleles " A G"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; unknown ; N/A GL192777.1 samtools variation 545546 545546 . . . alleles " A G"; frequencies " 0.580645161290323 0.419354838709677"; depth 62 ; unknown ; N/A GL192777.1 samtools variation 549986 549986 . . . alleles " G T"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; unknown ; N/A GL192777.1 samtools variation 550677 550677 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 108 ; unknown ; N/A GL192777.1 samtools variation 552262 552262 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192777.1 samtools variation 954066 954066 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192777.1 samtools variation 960385 960385 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192777.1 samtools variation 963735 963735 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL192777.1 samtools variation 966020 966020 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 63 ; unknown ; synonymous GL192777.1 samtools variation 967589 967589 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192777.1 samtools variation 971273 971273 . . . alleles " C T"; frequencies " 0.677777777777778 0.322222222222222"; depth 180 ; unknown ; synonymous GL192777.1 samtools variation 973070 973070 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; N/A GL192777.1 samtools variation 974967 974967 . . . alleles " G A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; known ; N/A GL192777.1 samtools variation 1205932 1205932 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL192777.1 samtools variation 1207579 1207579 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192777.1 samtools variation 1207705 1207705 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 15 ; known ; synonymous GL192779.1 samtools variation 153736 153736 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192779.1 samtools variation 175070 175070 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL192779.1 samtools variation 175230 175230 . . . alleles " C T"; frequencies " 0.56 0.44"; depth 50 ; unknown ; N/A GL192779.1 samtools variation 175405 175405 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192779.1 samtools variation 180777 180777 . . . alleles " T C"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; known ; N/A GL192779.1 samtools variation 181273 181273 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 60 ; unknown ; N/A GL192779.1 samtools variation 181885 181885 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 45 ; unknown ; N/A GL192779.1 samtools variation 188395 188395 . . . alleles " A T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192779.1 samtools variation 188412 188412 . . . alleles " T G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192779.1 samtools variation 204717 204717 . . . alleles " G A"; frequencies " 0.783018867924528 0.216981132075472"; depth 106 ; unknown ; synonymous GL192779.1 samtools variation 217988 217988 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 36 ; unknown ; non-synonymous GL192779.1 samtools variation 222631 222631 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192779.1 samtools variation 226243 226243 . . . alleles " A G"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; known ; N/A GL192779.1 samtools variation 339958 339958 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192779.1 samtools variation 365204 365204 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192779.1 samtools variation 493260 493260 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL192779.1 samtools variation 493268 493268 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL192779.1 samtools variation 494138 494138 . . . alleles " G T"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL192779.1 samtools variation 494140 494140 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192779.1 samtools variation 494618 494618 . . . alleles " C T"; frequencies " 0.664634146341463 0.329268292682927"; depth 164 ; known ; synonymous GL192779.1 samtools variation 495391 495391 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192779.1 samtools variation 495485 495485 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192779.1 samtools variation 495717 495717 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192779.1 samtools variation 911792 911792 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192779.1 samtools variation 923963 923963 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192779.1 samtools variation 954521 954521 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192781.1 samtools variation 361733 361733 . . . alleles " G A"; frequencies " 0.462365591397849 0.537634408602151"; depth 93 ; known ; synonymous GL192781.1 samtools variation 372237 372237 . . . alleles " T C"; frequencies " 0.52 0.48"; depth 50 ; unknown ; synonymous GL192781.1 samtools variation 378913 378913 . . . alleles " G A"; frequencies " 0.458333333333333 0.541666666666667"; depth 48 ; unknown ; synonymous GL192781.1 samtools variation 488501 488501 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192781.1 samtools variation 933665 933665 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192781.1 samtools variation 933736 933736 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192781.1 samtools variation 936387 936387 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192781.1 samtools variation 938567 938567 . . . alleles " G T"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL192781.1 samtools variation 1173047 1173047 . . . alleles " C T"; frequencies " 0.650602409638554 0.349397590361446"; depth 83 ; unknown ; N/A GL192781.1 samtools variation 1173120 1173120 . . . alleles " C T"; frequencies " 0.698412698412698 0.301587301587302"; depth 63 ; unknown ; N/A GL192781.1 samtools variation 1173147 1173147 . . . alleles " G A"; frequencies " 0.69811320754717 0.30188679245283"; depth 53 ; unknown ; N/A GL192781.1 samtools variation 1174461 1174461 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192781.1 samtools variation 1174594 1174594 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192781.1 samtools variation 1187760 1187760 . . . alleles " G T"; frequencies " 0.759259259259259 0.240740740740741"; depth 54 ; unknown ; non-synonymous GL192781.1 samtools variation 1252243 1252243 . . . alleles " C T"; frequencies " 0.563106796116505 0.436893203883495"; depth 103 ; unknown ; N/A GL192781.1 samtools variation 1253121 1253121 . . . alleles " C T"; frequencies " 0.703703703703704 0.296296296296296"; depth 54 ; unknown ; N/A GL192781.1 samtools variation 1254662 1254662 . . . alleles " T C"; frequencies " 0.405172413793103 0.594827586206897"; depth 116 ; unknown ; N/A GL192781.1 samtools variation 1254742 1254742 . . . alleles " C A"; frequencies " 0.488888888888889 0.511111111111111"; depth 90 ; unknown ; N/A GL192781.1 samtools variation 1254761 1254761 . . . alleles " C A"; frequencies " 0.454545454545455 0.545454545454545"; depth 55 ; unknown ; N/A GL192781.1 samtools variation 1255319 1255319 . . . alleles " T C"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL192781.1 samtools variation 1267146 1267146 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; synonymous GL192781.1 samtools variation 1273907 1273907 . . . alleles " G C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192781.1 samtools variation 1275154 1275154 . . . alleles " G A"; frequencies " 0.632911392405063 0.367088607594937"; depth 79 ; unknown ; synonymous GL192782.1 samtools variation 543094 543094 . . . alleles " T C"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192782.1 samtools variation 543847 543847 . . . alleles " G A"; frequencies " 0.445054945054945 0.554945054945055"; depth 182 ; known ; N/A GL192782.1 samtools variation 547132 547132 . . . alleles " A G"; frequencies " 0.422222222222222 0.555555555555556"; depth 45 ; unknown ; N/A GL192782.1 samtools variation 547235 547235 . . . alleles " C A"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL192782.1 samtools variation 547241 547241 . . . alleles " G C"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL192782.1 samtools variation 547541 547541 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192782.1 samtools variation 551453 551453 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192782.1 samtools variation 551495 551495 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192782.1 samtools variation 554977 554977 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL192782.1 samtools variation 561544 561544 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192782.1 samtools variation 561573 561573 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192782.1 samtools variation 561879 561879 . . . alleles " G C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192782.1 samtools variation 584116 584116 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192782.1 samtools variation 590645 590645 . . . alleles " A T"; frequencies " 0.545454545454545 0.363636363636364"; depth 11 ; unknown ; non-synonymous GL192782.1 samtools variation 602918 602918 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192782.1 samtools variation 689207 689207 . . . alleles " A G"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL192783.1 samtools variation 752710 752710 . . . alleles " G A"; frequencies " 0.686274509803922 0.313725490196078"; depth 51 ; unknown ; N/A GL192783.1 samtools variation 753644 753644 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 64 ; unknown ; N/A GL192783.1 samtools variation 755963 755963 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192783.1 samtools variation 756199 756199 . . . alleles " G C"; frequencies " 0.651685393258427 0.348314606741573"; depth 89 ; unknown ; N/A GL192783.1 samtools variation 763046 763046 . . . alleles " C T"; frequencies " 0.679611650485437 0.320388349514563"; depth 309 ; unknown ; synonymous GL192783.1 samtools variation 770811 770811 . . . alleles " T C"; frequencies " 0.78 0.22"; depth 50 ; unknown ; N/A GL192783.1 samtools variation 773671 773671 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192783.1 samtools variation 868511 868511 . . . alleles " T C"; frequencies " 0.78 0.2"; depth 50 ; unknown ; synonymous GL192783.1 samtools variation 872235 872235 . . . alleles " C T"; frequencies " 0.717054263565892 0.282945736434109"; depth 1290 ; unknown ; N/A GL192783.1 samtools variation 1016215 1016215 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192783.1 samtools variation 1021709 1021709 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192783.1 samtools variation 1024909 1024909 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192783.1 samtools variation 1025516 1025516 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 56 ; unknown ; N/A GL192783.1 samtools variation 1038638 1038638 . . . alleles " T C"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; synonymous GL192783.1 samtools variation 1142415 1142415 . . . alleles " C T"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; known ; synonymous GL192783.1 samtools variation 1143152 1143152 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192783.1 samtools variation 1143246 1143246 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192783.1 samtools variation 1184067 1184067 . . . alleles " C T"; frequencies " 0.310526315789474 0.689473684210526"; depth 190 ; unknown ; N/A GL192783.1 samtools variation 1247778 1247778 . . . alleles " C T"; frequencies " 0.661971830985915 0.338028169014085"; depth 71 ; unknown ; synonymous GL192783.1 samtools variation 1249587 1249587 . . . alleles " G C"; frequencies " 0.41025641025641 0.58974358974359"; depth 117 ; unknown ; non-synonymous GL192783.1 samtools variation 1250005 1250005 . . . alleles " A G"; frequencies " 0.209302325581395 0.790697674418605"; depth 86 ; unknown ; N/A GL192783.1 samtools variation 1250194 1250194 . . . alleles " C T"; frequencies " 0.233333333333333 0.766666666666667"; depth 120 ; unknown ; N/A GL192783.1 samtools variation 1251284 1251284 . . . alleles " T C"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL192783.1 samtools variation 1255291 1255291 . . . alleles " C A"; frequencies " 0.296296296296296 0.703703703703704"; depth 54 ; unknown ; N/A GL192783.1 samtools variation 1276810 1276810 . . . alleles " G C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192783.1 samtools variation 1315458 1315458 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192783.1 samtools variation 1316389 1316389 . . . alleles " C T"; frequencies " 0.432385874246339 0.567614125753661"; depth 1161 ; unknown ; N/A GL192783.1 samtools variation 1316558 1316558 . . . alleles " C T"; frequencies " 0.297830374753452 0.702169625246548"; depth 507 ; unknown ; N/A GL192783.1 samtools variation 1316621 1316621 . . . alleles " A G"; frequencies " 0.700980392156863 0.299019607843137"; depth 204 ; unknown ; N/A GL192783.1 samtools variation 1317047 1317047 . . . alleles " T C"; frequencies " 0.697674418604651 0.302325581395349"; depth 43 ; unknown ; N/A GL192783.1 samtools variation 1323749 1323749 . . . alleles " C A"; frequencies " 0.461538461538462 0.461538461538462"; depth 13 ; unknown ; N/A GL192783.1 samtools variation 1333032 1333032 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 168 ; unknown ; N/A GL192783.1 samtools variation 1372940 1372940 . . . alleles " G T"; frequencies " 0.693548387096774 0.306451612903226"; depth 62 ; known ; N/A GL192783.1 samtools variation 1377322 1377322 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL192784.1 samtools variation 79465 79465 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192784.1 samtools variation 480541 480541 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; synonymous GL192786.1 samtools variation 53806 53806 . . . alleles " T C"; frequencies " 0.300970873786408 0.699029126213592"; depth 103 ; unknown ; N/A GL192786.1 samtools variation 67993 67993 . . . alleles " A G"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; unknown ; N/A GL192786.1 samtools variation 376240 376240 . . . alleles " A G"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; unknown ; N/A GL192786.1 samtools variation 376886 376886 . . . alleles " G T"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192786.1 samtools variation 379314 379314 . . . alleles " G C"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL192786.1 samtools variation 380049 380049 . . . alleles " T G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192786.1 samtools variation 458549 458549 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192786.1 samtools variation 462704 462704 . . . alleles " T A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192786.1 samtools variation 467504 467504 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192786.1 samtools variation 502551 502551 . . . alleles " A G"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192786.1 samtools variation 627975 627975 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; synonymous GL192786.1 samtools variation 743685 743685 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192786.1 samtools variation 745983 745983 . . . alleles " C G"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192786.1 samtools variation 767507 767507 . . . alleles " A G"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; synonymous GL192787.1 samtools variation 114720 114720 . . . alleles " C G"; frequencies " 0.383928571428571 0.616071428571429"; depth 112 ; unknown ; synonymous GL192787.1 samtools variation 117790 117790 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 39 ; unknown ; N/A GL192787.1 samtools variation 117934 117934 . . . alleles " A T"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL192787.1 samtools variation 117977 117977 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL192787.1 samtools variation 118359 118359 . . . alleles " C T"; frequencies " 0.236842105263158 0.763157894736842"; depth 38 ; unknown ; N/A GL192787.1 samtools variation 125031 125031 . . . alleles " A G"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; unknown ; N/A GL192787.1 samtools variation 279182 279182 . . . alleles " A G"; frequencies " 0.455555555555556 0.544444444444444"; depth 90 ; unknown ; synonymous GL192787.1 samtools variation 298940 298940 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 95 ; unknown ; non-synonymous GL192787.1 samtools variation 303680 303680 . . . alleles " C T"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; known ; N/A GL192787.1 samtools variation 315078 315078 . . . alleles " G A"; frequencies " 0.69375 0.30625"; depth 160 ; known ; non-synonymous GL192787.1 samtools variation 317892 317892 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192787.1 samtools variation 353370 353370 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192787.1 samtools variation 402610 402610 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192787.1 samtools variation 653393 653393 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL192787.1 samtools variation 662575 662575 . . . alleles " G A"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL192787.1 samtools variation 665144 665144 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192787.1 samtools variation 665213 665213 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; N/A GL192787.1 samtools variation 666805 666805 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 50 ; known ; N/A GL192787.1 samtools variation 668991 668991 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192787.1 samtools variation 938087 938087 . . . alleles " C T"; frequencies " 0.368421052631579 0.62280701754386"; depth 114 ; known ; synonymous GL192787.1 samtools variation 938290 938290 . . . alleles " C A"; frequencies " 0.497991967871486 0.502008032128514"; depth 249 ; unknown ; N/A GL192787.1 samtools variation 938702 938702 . . . alleles " A G"; frequencies " 0.621848739495798 0.378151260504202"; depth 238 ; known ; N/A GL192787.1 samtools variation 1036289 1036289 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192787.1 samtools variation 1039361 1039361 . . . alleles " C T"; frequencies " 0.436262866191607 0.563737133808393"; depth 1263 ; unknown ; N/A GL192787.1 samtools variation 1039579 1039579 . . . alleles " C T"; frequencies " 0.369426751592357 0.630573248407643"; depth 1099 ; unknown ; N/A GL192787.1 samtools variation 1040501 1040501 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192787.1 samtools variation 1041511 1041511 . . . alleles " G A"; frequencies " 0.531914893617021 0.468085106382979"; depth 47 ; unknown ; N/A GL192787.1 samtools variation 1041924 1041924 . . . alleles " A G"; frequencies " 0.508474576271186 0.491525423728814"; depth 59 ; unknown ; N/A GL192787.1 samtools variation 1045130 1045130 . . . alleles " G C"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL192787.1 samtools variation 1150777 1150777 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 48 ; unknown ; N/A GL192787.1 samtools variation 1157980 1157980 . . . alleles " G A"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; known ; N/A GL192787.1 samtools variation 1159248 1159248 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 65 ; known ; N/A GL192787.1 samtools variation 1332478 1332478 . . . alleles " C A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192787.1 samtools variation 1400374 1400374 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; synonymous GL192788.1 samtools variation 93223 93223 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192788.1 samtools variation 103226 103226 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192788.1 samtools variation 106797 106797 . . . alleles " T C"; frequencies " 0.622222222222222 0.377777777777778"; depth 45 ; unknown ; N/A GL192788.1 samtools variation 107015 107015 . . . alleles " G A"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192788.1 samtools variation 107368 107368 . . . alleles " T G"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL192788.1 samtools variation 107548 107548 . . . alleles " G T"; frequencies " 0.675 0.325"; depth 40 ; unknown ; N/A GL192788.1 samtools variation 107644 107644 . . . alleles " C T"; frequencies " 0.318181818181818 0.681818181818182"; depth 44 ; unknown ; N/A GL192788.1 samtools variation 107826 107826 . . . alleles " C T"; frequencies " 0.641791044776119 0.358208955223881"; depth 67 ; unknown ; N/A GL192788.1 samtools variation 107910 107910 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 54 ; unknown ; N/A GL192788.1 samtools variation 109425 109425 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192788.1 samtools variation 110515 110515 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192788.1 samtools variation 111991 111991 . . . alleles " C T"; frequencies " 0.490196078431373 0.509803921568627"; depth 51 ; unknown ; N/A GL192788.1 samtools variation 180462 180462 . . . alleles " G A"; frequencies " 0.672413793103448 0.327586206896552"; depth 58 ; unknown ; N/A GL192788.1 samtools variation 523473 523473 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL192788.1 samtools variation 724671 724671 . . . alleles " A G"; frequencies " 0.554794520547945 0.445205479452055"; depth 146 ; unknown ; N/A GL192788.1 samtools variation 881930 881930 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192788.1 samtools variation 882526 882526 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192788.1 samtools variation 899553 899553 . . . alleles " C T"; frequencies " 0.471428571428571 0.528571428571429"; depth 70 ; unknown ; synonymous GL192788.1 samtools variation 900017 900017 . . . alleles " T C"; frequencies " 0.506172839506173 0.493827160493827"; depth 81 ; unknown ; synonymous GL192788.1 samtools variation 901386 901386 . . . alleles " C G"; frequencies " 0.625 0.375"; depth 72 ; unknown ; non-synonymous GL192788.1 samtools variation 901824 901824 . . . alleles " T A"; frequencies " 0.594202898550725 0.405797101449275"; depth 69 ; unknown ; non-synonymous GL192788.1 samtools variation 902471 902471 . . . alleles " A G"; frequencies " 0.242424242424242 0.757575757575758"; depth 33 ; unknown ; synonymous GL192788.1 samtools variation 902880 902880 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; non-synonymous GL192788.1 samtools variation 985179 985179 . . . alleles " C G"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; unknown ; non-synonymous GL192788.1 samtools variation 1070579 1070579 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192788.1 samtools variation 1105748 1105748 . . . alleles " C A"; frequencies " 0.536842105263158 0.463157894736842"; depth 95 ; unknown ; N/A GL192788.1 samtools variation 1125733 1125733 . . . alleles " A G"; frequencies " 0.793103448275862 0.206896551724138"; depth 58 ; unknown ; N/A GL192789.1 samtools variation 50174 50174 . . . alleles " T A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192789.1 samtools variation 60814 60814 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192789.1 samtools variation 77667 77667 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192789.1 samtools variation 105104 105104 . . . alleles " T A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192789.1 samtools variation 106662 106662 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192789.1 samtools variation 107380 107380 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192789.1 samtools variation 109701 109701 . . . alleles " G A"; frequencies " 0.657303370786517 0.331460674157303"; depth 178 ; unknown ; N/A GL192789.1 samtools variation 110903 110903 . . . alleles " A G"; frequencies " 0.637362637362637 0.362637362637363"; depth 91 ; unknown ; N/A GL192789.1 samtools variation 110919 110919 . . . alleles " G C"; frequencies " 0.64957264957265 0.35042735042735"; depth 117 ; unknown ; N/A GL192789.1 samtools variation 111040 111040 . . . alleles " T C"; frequencies " 0.673913043478261 0.326086956521739"; depth 138 ; unknown ; N/A GL192789.1 samtools variation 111353 111353 . . . alleles " A G"; frequencies " 0.543269230769231 0.456730769230769"; depth 208 ; unknown ; N/A GL192789.1 samtools variation 111439 111439 . . . alleles " G A"; frequencies " 0.582491582491583 0.417508417508417"; depth 297 ; unknown ; N/A GL192789.1 samtools variation 111524 111524 . . . alleles " C T"; frequencies " 0.567164179104478 0.432835820895522"; depth 201 ; unknown ; N/A GL192789.1 samtools variation 111545 111545 . . . alleles " A G"; frequencies " 0.56 0.44"; depth 200 ; unknown ; N/A GL192789.1 samtools variation 111781 111781 . . . alleles " C T"; frequencies " 0.659574468085106 0.340425531914894"; depth 235 ; unknown ; N/A GL192789.1 samtools variation 111896 111896 . . . alleles " G A"; frequencies " 0.603603603603604 0.396396396396396"; depth 222 ; unknown ; N/A GL192789.1 samtools variation 112386 112386 . . . alleles " C T"; frequencies " 0.242774566473988 0.757225433526012"; depth 173 ; unknown ; N/A GL192789.1 samtools variation 112577 112577 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 65 ; unknown ; N/A GL192789.1 samtools variation 113107 113107 . . . alleles " C G"; frequencies " 0.795013850415512 0.204986149584488"; depth 361 ; unknown ; N/A GL192789.1 samtools variation 113108 113108 . . . alleles " A T"; frequencies " 0.799442896935933 0.200557103064067"; depth 359 ; unknown ; N/A GL192789.1 samtools variation 114020 114020 . . . alleles " C T"; frequencies " 0.476510067114094 0.523489932885906"; depth 298 ; unknown ; N/A GL192789.1 samtools variation 114127 114127 . . . alleles " A G"; frequencies " 0.567796610169492 0.432203389830508"; depth 236 ; unknown ; N/A GL192789.1 samtools variation 116706 116706 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192789.1 samtools variation 121401 121401 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192789.1 samtools variation 121424 121424 . . . alleles " T G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192789.1 samtools variation 121520 121520 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192789.1 samtools variation 127669 127669 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192789.1 samtools variation 129783 129783 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192789.1 samtools variation 130653 130653 . . . alleles " G A"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192789.1 samtools variation 131540 131540 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192789.1 samtools variation 131541 131541 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192789.1 samtools variation 133174 133174 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192789.1 samtools variation 133224 133224 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192789.1 samtools variation 133268 133268 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192789.1 samtools variation 135512 135512 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192789.1 samtools variation 135583 135583 . . . alleles " A C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192789.1 samtools variation 135608 135608 . . . alleles " G A"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL192789.1 samtools variation 135784 135784 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL192789.1 samtools variation 137998 137998 . . . alleles " T C"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL192789.1 samtools variation 138094 138094 . . . alleles " A T"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; unknown ; N/A GL192789.1 samtools variation 143897 143897 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192789.1 samtools variation 591931 591931 . . . alleles " G A"; frequencies " 0.487179487179487 0.512820512820513"; depth 39 ; unknown ; N/A GL192789.1 samtools variation 599681 599681 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192789.1 samtools variation 601023 601023 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192789.1 samtools variation 636138 636138 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 117 ; known ; N/A GL192789.1 samtools variation 636226 636226 . . . alleles " T C"; frequencies " 0.377358490566038 0.622641509433962"; depth 106 ; known ; N/A GL192789.1 samtools variation 637456 637456 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 36 ; known ; N/A GL192789.1 samtools variation 637652 637652 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL192789.1 samtools variation 637673 637673 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 40 ; known ; N/A GL192789.1 samtools variation 637933 637933 . . . alleles " A G"; frequencies " 0.553846153846154 0.446153846153846"; depth 65 ; known ; N/A GL192789.1 samtools variation 637942 637942 . . . alleles " T C"; frequencies " 0.566666666666667 0.433333333333333"; depth 60 ; known ; N/A GL192789.1 samtools variation 650127 650127 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192789.1 samtools variation 650749 650749 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192789.1 samtools variation 650757 650757 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192789.1 samtools variation 651111 651111 . . . alleles " A C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192789.1 samtools variation 761375 761375 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL192789.1 samtools variation 761777 761777 . . . alleles " C T"; frequencies " 0.755725190839695 0.244274809160305"; depth 131 ; unknown ; synonymous GL192789.1 samtools variation 761804 761804 . . . alleles " C T"; frequencies " 0.790909090909091 0.209090909090909"; depth 110 ; unknown ; synonymous GL192789.1 samtools variation 762041 762041 . . . alleles " T C"; frequencies " 0.705128205128205 0.294871794871795"; depth 78 ; known ; synonymous GL192789.1 samtools variation 762197 762197 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 63 ; unknown ; synonymous GL192789.1 samtools variation 762650 762650 . . . alleles " C G"; frequencies " 0.426086956521739 0.573913043478261"; depth 230 ; known ; synonymous GL192789.1 samtools variation 763004 763004 . . . alleles " G A"; frequencies " 0.527272727272727 0.472727272727273"; depth 110 ; known ; synonymous GL192789.1 samtools variation 763277 763277 . . . alleles " T C"; frequencies " 0.28030303030303 0.71969696969697"; depth 132 ; known ; synonymous GL192789.1 samtools variation 763514 763514 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 80 ; known ; N/A GL192789.1 samtools variation 763563 763563 . . . alleles " T C"; frequencies " 0.635294117647059 0.364705882352941"; depth 85 ; known ; N/A GL192789.1 samtools variation 763693 763693 . . . alleles " G A"; frequencies " 0.652380952380952 0.347619047619048"; depth 210 ; unknown ; N/A GL192789.1 samtools variation 763831 763831 . . . alleles " G C"; frequencies " 0.459016393442623 0.540983606557377"; depth 305 ; unknown ; N/A GL192789.1 samtools variation 763879 763879 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 126 ; unknown ; N/A GL192789.1 samtools variation 789488 789488 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192789.1 samtools variation 813876 813876 . . . alleles " C G"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192789.1 samtools variation 826390 826390 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192789.1 samtools variation 829281 829281 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192789.1 samtools variation 872252 872252 . . . alleles " C T"; frequencies " 0.28021978021978 0.71978021978022"; depth 182 ; known ; synonymous GL192789.1 samtools variation 872285 872285 . . . alleles " C T"; frequencies " 0.691542288557214 0.308457711442786"; depth 201 ; known ; synonymous GL192789.1 samtools variation 881023 881023 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 30 ; unknown ; synonymous GL192789.1 samtools variation 881083 881083 . . . alleles " G C"; frequencies " 0.209302325581395 0.790697674418605"; depth 43 ; unknown ; non-synonymous GL192789.1 samtools variation 881095 881095 . . . alleles " T C"; frequencies " 0.217391304347826 0.782608695652174"; depth 46 ; unknown ; synonymous GL192789.1 samtools variation 1084242 1084242 . . . alleles " G A"; frequencies " 0.704861111111111 0.295138888888889"; depth 288 ; known ; N/A GL192789.1 samtools variation 1084535 1084535 . . . alleles " C T"; frequencies " 0.31237721021611 0.68762278978389"; depth 509 ; known ; N/A GL192789.1 samtools variation 1084553 1084553 . . . alleles " G C"; frequencies " 0.361301369863014 0.638698630136986"; depth 584 ; known ; N/A GL192789.1 samtools variation 1084872 1084872 . . . alleles " A G"; frequencies " 0.302583025830258 0.697416974169742"; depth 542 ; known ; synonymous GL192789.1 samtools variation 1085140 1085140 . . . alleles " T C"; frequencies " 0.347280334728033 0.648535564853556"; depth 239 ; known ; non-synonymous GL192789.1 samtools variation 1085662 1085662 . . . alleles " C T"; frequencies " 0.704761904761905 0.295238095238095"; depth 105 ; unknown ; non-synonymous GL192789.1 samtools variation 1085837 1085837 . . . alleles " G A"; frequencies " 0.735849056603774 0.264150943396226"; depth 53 ; known ; N/A GL192789.1 samtools variation 1086115 1086115 . . . alleles " A G"; frequencies " 0.412844036697248 0.587155963302752"; depth 109 ; known ; N/A GL192789.1 samtools variation 1086437 1086437 . . . alleles " C T"; frequencies " 0.753521126760563 0.246478873239437"; depth 142 ; known ; N/A GL192789.1 samtools variation 1086569 1086569 . . . alleles " G A"; frequencies " 0.651851851851852 0.348148148148148"; depth 135 ; known ; N/A GL192789.1 samtools variation 1108234 1108234 . . . alleles " A T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192789.1 samtools variation 1115590 1115590 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 54 ; known ; N/A GL192789.1 samtools variation 1115643 1115643 . . . alleles " G A"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL192789.1 samtools variation 1139339 1139339 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192789.1 samtools variation 1141833 1141833 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192789.1 samtools variation 1142406 1142406 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192789.1 samtools variation 1149163 1149163 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL192789.1 samtools variation 1153386 1153386 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192789.1 samtools variation 1157114 1157114 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192789.1 samtools variation 1157124 1157124 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL192789.1 samtools variation 1158580 1158580 . . . alleles " A C"; frequencies " 0.57396449704142 0.42603550295858"; depth 169 ; unknown ; N/A GL192789.1 samtools variation 1159497 1159497 . . . alleles " G A"; frequencies " 0.690553745928339 0.309446254071661"; depth 307 ; unknown ; N/A GL192789.1 samtools variation 1160297 1160297 . . . alleles " C A"; frequencies " 0.277027027027027 0.722972972972973"; depth 296 ; known ; N/A GL192789.1 samtools variation 1160838 1160838 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 266 ; unknown ; N/A GL192789.1 samtools variation 1168453 1168453 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; synonymous GL192789.1 samtools variation 1187847 1187847 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192789.1 samtools variation 1224496 1224496 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192789.1 samtools variation 1224803 1224803 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192789.1 samtools variation 1224822 1224822 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192789.1 samtools variation 1224845 1224845 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192789.1 samtools variation 1251999 1251999 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192789.1 samtools variation 1253896 1253896 . . . alleles " G A"; frequencies " 0.541666666666667 0.458333333333333"; depth 120 ; unknown ; N/A GL192789.1 samtools variation 1254716 1254716 . . . alleles " C G"; frequencies " 0.695652173913043 0.301630434782609"; depth 368 ; unknown ; N/A GL192789.1 samtools variation 1254717 1254717 . . . alleles " C G"; frequencies " 0.697297297297297 0.3"; depth 370 ; unknown ; N/A GL192789.1 samtools variation 1254840 1254840 . . . alleles " C G"; frequencies " 0.303724928366762 0.696275071633238"; depth 349 ; unknown ; N/A GL192789.1 samtools variation 1255082 1255082 . . . alleles " C T"; frequencies " 0.797297297297297 0.202702702702703"; depth 222 ; unknown ; N/A GL192789.1 samtools variation 1255363 1255363 . . . alleles " G T"; frequencies " 0.710526315789474 0.289473684210526"; depth 114 ; unknown ; N/A GL192789.1 samtools variation 1255488 1255488 . . . alleles " G T"; frequencies " 0.763636363636364 0.236363636363636"; depth 55 ; unknown ; N/A GL192789.1 samtools variation 1256640 1256640 . . . alleles " G T"; frequencies " 0.637860082304527 0.362139917695473"; depth 729 ; unknown ; N/A GL192789.1 samtools variation 1256932 1256932 . . . alleles " G A"; frequencies " 0.345911949685535 0.654088050314465"; depth 159 ; unknown ; N/A GL192789.1 samtools variation 1256952 1256952 . . . alleles " T G"; frequencies " 0.336065573770492 0.663934426229508"; depth 122 ; unknown ; N/A GL192789.1 samtools variation 1257068 1257068 . . . alleles " T C"; frequencies " 0.239130434782609 0.760869565217391"; depth 92 ; unknown ; N/A GL192789.1 samtools variation 1257071 1257071 . . . alleles " G A"; frequencies " 0.608695652173913 0.391304347826087"; depth 92 ; unknown ; N/A GL192789.1 samtools variation 1257472 1257472 . . . alleles " A C"; frequencies " 0.301724137931034 0.698275862068966"; depth 232 ; unknown ; N/A GL192789.1 samtools variation 1257668 1257668 . . . alleles " C G"; frequencies " 0.466666666666667 0.533333333333333"; depth 195 ; unknown ; N/A GL192789.1 samtools variation 1257690 1257690 . . . alleles " G T"; frequencies " 0.570776255707763 0.429223744292237"; depth 219 ; unknown ; N/A GL192789.1 samtools variation 1257717 1257717 . . . alleles " G A"; frequencies " 0.49792531120332 0.50207468879668"; depth 241 ; unknown ; N/A GL192789.1 samtools variation 1257779 1257779 . . . alleles " T C"; frequencies " 0.4296875 0.5703125"; depth 256 ; unknown ; N/A GL192789.1 samtools variation 1258027 1258027 . . . alleles " A C"; frequencies " 0.325641025641026 0.674358974358974"; depth 390 ; unknown ; N/A GL192789.1 samtools variation 1258279 1258279 . . . alleles " C G"; frequencies " 0.707407407407407 0.292592592592593"; depth 270 ; unknown ; N/A GL192789.1 samtools variation 1258383 1258383 . . . alleles " A G"; frequencies " 0.573839662447257 0.426160337552743"; depth 237 ; known ; N/A GL192789.1 samtools variation 1259123 1259123 . . . alleles " G A"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; N/A GL192789.1 samtools variation 1259282 1259282 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192789.1 samtools variation 1266845 1266845 . . . alleles " G A"; frequencies " 0.698412698412698 0.301587301587302"; depth 63 ; unknown ; N/A GL192789.1 samtools variation 1266871 1266871 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; unknown ; N/A GL192789.1 samtools variation 1270594 1270594 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192789.1 samtools variation 1272376 1272376 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192789.1 samtools variation 1273861 1273861 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192789.1 samtools variation 1273862 1273862 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192789.1 samtools variation 1274520 1274520 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192789.1 samtools variation 1275376 1275376 . . . alleles " C T"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; known ; N/A GL192789.1 samtools variation 1277091 1277091 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 140 ; unknown ; N/A GL192789.1 samtools variation 1277510 1277510 . . . alleles " A G"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; known ; N/A GL192789.1 samtools variation 1277731 1277731 . . . alleles " A G"; frequencies " 0.765625 0.234375"; depth 64 ; known ; N/A GL192789.1 samtools variation 1277921 1277921 . . . alleles " T G"; frequencies " 0.261682242990654 0.738317757009346"; depth 107 ; known ; N/A GL192789.1 samtools variation 1279175 1279175 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192789.1 samtools variation 1279247 1279247 . . . alleles " G T"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; unknown ; N/A GL192789.1 samtools variation 1279248 1279248 . . . alleles " G A"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; unknown ; N/A GL192790.1 samtools variation 506982 506982 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192790.1 samtools variation 508220 508220 . . . alleles " A G"; frequencies " 0.576642335766423 0.423357664233577"; depth 137 ; unknown ; N/A GL192790.1 samtools variation 508231 508231 . . . alleles " A G"; frequencies " 0.573426573426573 0.426573426573427"; depth 143 ; unknown ; N/A GL192790.1 samtools variation 508486 508486 . . . alleles " T C"; frequencies " 0.476744186046512 0.523255813953488"; depth 86 ; unknown ; N/A GL192790.1 samtools variation 508850 508850 . . . alleles " T C"; frequencies " 0.509803921568627 0.490196078431373"; depth 51 ; unknown ; N/A GL192790.1 samtools variation 509185 509185 . . . alleles " A C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192790.1 samtools variation 509186 509186 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192790.1 samtools variation 509509 509509 . . . alleles " A G"; frequencies " 0.422222222222222 0.577777777777778"; depth 45 ; unknown ; N/A GL192790.1 samtools variation 509629 509629 . . . alleles " G A"; frequencies " 0.540740740740741 0.459259259259259"; depth 135 ; unknown ; N/A GL192790.1 samtools variation 510092 510092 . . . alleles " C G"; frequencies " 0.653846153846154 0.346153846153846"; depth 52 ; unknown ; N/A GL192790.1 samtools variation 512225 512225 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192790.1 samtools variation 512960 512960 . . . alleles " G A"; frequencies " 0.498666666666667 0.501333333333333"; depth 375 ; unknown ; non-synonymous GL192790.1 samtools variation 513649 513649 . . . alleles " A G"; frequencies " 0.620767494356659 0.379232505643341"; depth 443 ; unknown ; synonymous GL192790.1 samtools variation 518908 518908 . . . alleles " A G"; frequencies " 0.466302367941712 0.531876138433515"; depth 549 ; unknown ; synonymous GL192790.1 samtools variation 524144 524144 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192790.1 samtools variation 533352 533352 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 168 ; unknown ; N/A GL192790.1 samtools variation 549059 549059 . . . alleles " C G"; frequencies " 0.307692307692308 0.692307692307692"; depth 65 ; unknown ; N/A GL192790.1 samtools variation 549102 549102 . . . alleles " T G"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL192790.1 samtools variation 597700 597700 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192790.1 samtools variation 925600 925600 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192790.1 samtools variation 932509 932509 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192790.1 samtools variation 945339 945339 . . . alleles " C T"; frequencies " 0.723404255319149 0.276595744680851"; depth 376 ; unknown ; synonymous GL192790.1 samtools variation 959594 959594 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192790.1 samtools variation 1027667 1027667 . . . alleles " G C"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL192790.1 samtools variation 1027710 1027710 . . . alleles " G C"; frequencies " 0.618556701030928 0.381443298969072"; depth 97 ; unknown ; N/A GL192790.1 samtools variation 1027794 1027794 . . . alleles " T G"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL192790.1 samtools variation 1027829 1027829 . . . alleles " A G"; frequencies " 0.403061224489796 0.596938775510204"; depth 196 ; unknown ; N/A GL192790.1 samtools variation 1028180 1028180 . . . alleles " A G"; frequencies " 0.340909090909091 0.659090909090909"; depth 44 ; unknown ; N/A GL192790.1 samtools variation 1028193 1028193 . . . alleles " G A"; frequencies " 0.391891891891892 0.608108108108108"; depth 74 ; unknown ; N/A GL192790.1 samtools variation 1037919 1037919 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192790.1 samtools variation 1038898 1038898 . . . alleles " A T"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL192790.1 samtools variation 1039565 1039565 . . . alleles " T C"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL192791.1 samtools variation 118872 118872 . . . alleles " A G"; frequencies " 0.291666666666667 0.708333333333333"; depth 48 ; unknown ; N/A GL192791.1 samtools variation 122893 122893 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192791.1 samtools variation 134654 134654 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192791.1 samtools variation 222305 222305 . . . alleles " G T"; frequencies " 0.235294117647059 0.764705882352941"; depth 51 ; known ; N/A GL192791.1 samtools variation 222438 222438 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 66 ; unknown ; N/A GL192791.1 samtools variation 228313 228313 . . . alleles " G A"; frequencies " 0.708860759493671 0.291139240506329"; depth 79 ; unknown ; synonymous GL192791.1 samtools variation 245498 245498 . . . alleles " T C"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; known ; synonymous GL192791.1 samtools variation 263233 263233 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192791.1 samtools variation 264671 264671 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 60 ; unknown ; synonymous GL192791.1 samtools variation 293564 293564 . . . alleles " A C"; frequencies " 0.735576923076923 0.264423076923077"; depth 208 ; unknown ; synonymous GL192791.1 samtools variation 426220 426220 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192791.1 samtools variation 838636 838636 . . . alleles " A C"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192791.1 samtools variation 839835 839835 . . . alleles " G A"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL192791.1 samtools variation 847131 847131 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192791.1 samtools variation 960138 960138 . . . alleles " C T"; frequencies " 0.689655172413793 0.310344827586207"; depth 58 ; unknown ; N/A GL192791.1 samtools variation 960284 960284 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 68 ; unknown ; N/A GL192791.1 samtools variation 960478 960478 . . . alleles " T C"; frequencies " 0.74468085106383 0.25531914893617"; depth 47 ; unknown ; N/A GL192791.1 samtools variation 961022 961022 . . . alleles " A G"; frequencies " 0.66412213740458 0.33587786259542"; depth 131 ; unknown ; N/A GL192791.1 samtools variation 961431 961431 . . . alleles " G A"; frequencies " 0.617647058823529 0.382352941176471"; depth 68 ; unknown ; N/A GL192791.1 samtools variation 961562 961562 . . . alleles " T A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192791.1 samtools variation 962052 962052 . . . alleles " T C"; frequencies " 0.641791044776119 0.358208955223881"; depth 67 ; unknown ; N/A GL192791.1 samtools variation 963199 963199 . . . alleles " G A"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL192791.1 samtools variation 963460 963460 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 63 ; unknown ; N/A GL192791.1 samtools variation 964946 964946 . . . alleles " T C"; frequencies " 0.629032258064516 0.370967741935484"; depth 62 ; unknown ; N/A GL192791.1 samtools variation 967014 967014 . . . alleles " A G"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192791.1 samtools variation 970595 970595 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192791.1 samtools variation 972702 972702 . . . alleles " G A"; frequencies " 0.765957446808511 0.234042553191489"; depth 47 ; unknown ; synonymous GL192791.1 samtools variation 975554 975554 . . . alleles " T A"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192791.1 samtools variation 985476 985476 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192791.1 samtools variation 1005494 1005494 . . . alleles " C T"; frequencies " 0.493975903614458 0.506024096385542"; depth 83 ; unknown ; non-synonymous GL192791.1 samtools variation 1007685 1007685 . . . alleles " G A"; frequencies " 0.769736842105263 0.230263157894737"; depth 152 ; unknown ; synonymous GL192791.1 samtools variation 1016980 1016980 . . . alleles " C A"; frequencies " 0.456521739130435 0.543478260869565"; depth 92 ; unknown ; synonymous GL192791.1 samtools variation 1042756 1042756 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192791.1 samtools variation 1066393 1066393 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192791.1 samtools variation 1185383 1185383 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192791.1 samtools variation 1340315 1340315 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192792.1 samtools variation 128321 128321 . . . alleles " G A"; frequencies " 0.792307692307692 0.207692307692308"; depth 390 ; unknown ; synonymous GL192792.1 samtools variation 231118 231118 . . . alleles " T C"; frequencies " 0.246913580246914 0.753086419753086"; depth 81 ; unknown ; N/A GL192792.1 samtools variation 301966 301966 . . . alleles " G T"; frequencies " 0.641791044776119 0.358208955223881"; depth 67 ; known ; N/A GL192792.1 samtools variation 304784 304784 . . . alleles " C A"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL192792.1 samtools variation 304864 304864 . . . alleles " T C"; frequencies " 0.315789473684211 0.684210526315789"; depth 114 ; known ; N/A GL192792.1 samtools variation 305199 305199 . . . alleles " T C"; frequencies " 0.24 0.76"; depth 50 ; known ; non-synonymous GL192792.1 samtools variation 305220 305220 . . . alleles " T G"; frequencies " 0.289473684210526 0.710526315789474"; depth 38 ; known ; non-synonymous GL192792.1 samtools variation 394526 394526 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 91 ; known ; N/A GL192792.1 samtools variation 394854 394854 . . . alleles " T A"; frequencies " 0.700934579439252 0.299065420560748"; depth 214 ; unknown ; N/A GL192792.1 samtools variation 395387 395387 . . . alleles " T C"; frequencies " 0.739910313901345 0.260089686098655"; depth 223 ; known ; N/A GL192792.1 samtools variation 396377 396377 . . . alleles " C G"; frequencies " 0.663398692810457 0.336601307189543"; depth 306 ; unknown ; N/A GL192792.1 samtools variation 396695 396695 . . . alleles " C G"; frequencies " 0.37037037037037 0.62962962962963"; depth 189 ; known ; N/A GL192792.1 samtools variation 396766 396766 . . . alleles " A G"; frequencies " 0.369047619047619 0.630952380952381"; depth 168 ; known ; N/A GL192792.1 samtools variation 397826 397826 . . . alleles " T A"; frequencies " 0.717032967032967 0.282967032967033"; depth 364 ; unknown ; non-synonymous GL192792.1 samtools variation 397971 397971 . . . alleles " C T"; frequencies " 0.324561403508772 0.675438596491228"; depth 114 ; known ; synonymous GL192792.1 samtools variation 417998 417998 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192792.1 samtools variation 481367 481367 . . . alleles " C T"; frequencies " 0.511111111111111 0.488888888888889"; depth 90 ; known ; non-synonymous GL192792.1 samtools variation 495787 495787 . . . alleles " C A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192792.1 samtools variation 502132 502132 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192792.1 samtools variation 633216 633216 . . . alleles " C T"; frequencies " 0.617647058823529 0.382352941176471"; depth 68 ; unknown ; synonymous GL192792.1 samtools variation 779486 779486 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192792.1 samtools variation 795416 795416 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL192793.1 samtools variation 196332 196332 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL192793.1 samtools variation 197130 197130 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192793.1 samtools variation 200760 200760 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; known ; N/A GL192793.1 samtools variation 201498 201498 . . . alleles " C T"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; N/A GL192793.1 samtools variation 201821 201821 . . . alleles " C A"; frequencies " 0.241935483870968 0.758064516129032"; depth 124 ; known ; N/A GL192793.1 samtools variation 202213 202213 . . . alleles " G A"; frequencies " 0.294871794871795 0.705128205128205"; depth 78 ; known ; N/A GL192793.1 samtools variation 377234 377234 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192793.1 samtools variation 380631 380631 . . . alleles " G A"; frequencies " 0.796875 0.203125"; depth 64 ; unknown ; N/A GL192793.1 samtools variation 400688 400688 . . . alleles " G A"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; synonymous GL192793.1 samtools variation 572990 572990 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL192793.1 samtools variation 634406 634406 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192793.1 samtools variation 647661 647661 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; synonymous GL192793.1 samtools variation 647817 647817 . . . alleles " A G"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; synonymous GL192793.1 samtools variation 755344 755344 . . . alleles " G C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192793.1 samtools variation 835127 835127 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192793.1 samtools variation 845184 845184 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192793.1 samtools variation 848033 848033 . . . alleles " G A"; frequencies " 0.738461538461539 0.261538461538462"; depth 65 ; unknown ; N/A GL192793.1 samtools variation 852796 852796 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192793.1 samtools variation 853758 853758 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192793.1 samtools variation 856417 856417 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192793.1 samtools variation 951540 951540 . . . alleles " G A"; frequencies " 0.65625 0.34375"; depth 64 ; unknown ; synonymous GL192793.1 samtools variation 991044 991044 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 51 ; unknown ; non-synonymous GL192793.1 samtools variation 1112764 1112764 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192793.1 samtools variation 1113323 1113323 . . . alleles " C T"; frequencies " 0.640287769784173 0.359712230215827"; depth 139 ; unknown ; synonymous GL192793.1 samtools variation 1113776 1113776 . . . alleles " A T"; frequencies " 0.785793154214207 0.214206845785793"; depth 2717 ; unknown ; synonymous GL192793.1 samtools variation 1113779 1113779 . . . alleles " C T"; frequencies " 0.78878842676311 0.21121157323689"; depth 2765 ; unknown ; synonymous GL192793.1 samtools variation 1113893 1113893 . . . alleles " T C"; frequencies " 0.707668149699032 0.292331850300968"; depth 3821 ; unknown ; synonymous GL192793.1 samtools variation 1114121 1114121 . . . alleles " T C"; frequencies " 0.700870482722237 0.298865734634661"; depth 3791 ; unknown ; synonymous GL192793.1 samtools variation 1149220 1149220 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192793.1 samtools variation 1152814 1152814 . . . alleles " T G"; frequencies " 0.757142857142857 0.242857142857143"; depth 140 ; unknown ; N/A GL192794.1 samtools variation 133757 133757 . . . alleles " G T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192794.1 samtools variation 164675 164675 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192794.1 samtools variation 172787 172787 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; N/A GL192794.1 samtools variation 271453 271453 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 25 ; known ; N/A GL192794.1 samtools variation 271539 271539 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; unknown ; N/A GL192794.1 samtools variation 273012 273012 . . . alleles " T A"; frequencies " 0.705882352941177 0.294117647058824"; depth 68 ; known ; N/A GL192794.1 samtools variation 275556 275556 . . . alleles " T C"; frequencies " 0.596774193548387 0.403225806451613"; depth 62 ; known ; N/A GL192794.1 samtools variation 356225 356225 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; synonymous GL192794.1 samtools variation 365403 365403 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192794.1 samtools variation 366098 366098 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192794.1 samtools variation 410887 410887 . . . alleles " T A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192794.1 samtools variation 410890 410890 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192794.1 samtools variation 416017 416017 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 66 ; unknown ; synonymous GL192794.1 samtools variation 416041 416041 . . . alleles " C A"; frequencies " 0.407407407407407 0.592592592592593"; depth 81 ; unknown ; synonymous GL192794.1 samtools variation 416776 416776 . . . alleles " A T"; frequencies " 0.235294117647059 0.764705882352941"; depth 102 ; unknown ; N/A GL192794.1 samtools variation 419053 419053 . . . alleles " C A"; frequencies " 0.350282485875706 0.649717514124294"; depth 177 ; unknown ; N/A GL192794.1 samtools variation 419426 419426 . . . alleles " C T"; frequencies " 0.402298850574713 0.597701149425287"; depth 174 ; unknown ; N/A GL192794.1 samtools variation 428105 428105 . . . alleles " G A"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; unknown ; non-synonymous GL192794.1 samtools variation 485060 485060 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192794.1 samtools variation 523535 523535 . . . alleles " C T"; frequencies " 0.797297297297297 0.202702702702703"; depth 74 ; unknown ; N/A GL192794.1 samtools variation 523537 523537 . . . alleles " T G"; frequencies " 0.693333333333333 0.306666666666667"; depth 75 ; known ; N/A GL192794.1 samtools variation 650634 650634 . . . alleles " G A"; frequencies " 0.519230769230769 0.480769230769231"; depth 52 ; unknown ; synonymous GL192794.1 samtools variation 730371 730371 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 48 ; unknown ; synonymous GL192794.1 samtools variation 740569 740569 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 195 ; unknown ; non-synonymous GL192794.1 samtools variation 741899 741899 . . . alleles " G A"; frequencies " 0.676056338028169 0.323943661971831"; depth 71 ; unknown ; synonymous GL192794.1 samtools variation 876084 876084 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192794.1 samtools variation 949391 949391 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL192794.1 samtools variation 956365 956365 . . . alleles " C T"; frequencies " 0.563829787234043 0.436170212765957"; depth 94 ; known ; synonymous GL192794.1 samtools variation 1391377 1391377 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL192795.1 samtools variation 1498 1498 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 45 ; known ; N/A GL192795.1 samtools variation 22268 22268 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192795.1 samtools variation 27296 27296 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192795.1 samtools variation 34534 34534 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 65 ; unknown ; N/A GL192795.1 samtools variation 40938 40938 . . . alleles " A C"; frequencies " 0.716363636363636 0.283636363636364"; depth 550 ; unknown ; N/A GL192795.1 samtools variation 47750 47750 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192795.1 samtools variation 55609 55609 . . . alleles " G A"; frequencies " 0.771384136858476 0.228615863141524"; depth 643 ; unknown ; N/A GL192795.1 samtools variation 63271 63271 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192795.1 samtools variation 71864 71864 . . . alleles " G A"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL192795.1 samtools variation 72653 72653 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192795.1 samtools variation 72718 72718 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192795.1 samtools variation 74495 74495 . . . alleles " C T"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192795.1 samtools variation 74561 74561 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL192795.1 samtools variation 112022 112022 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; non-synonymous GL192795.1 samtools variation 127384 127384 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192795.1 samtools variation 187472 187472 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL192795.1 samtools variation 280028 280028 . . . alleles " A G"; frequencies " 0.503875968992248 0.496124031007752"; depth 129 ; unknown ; N/A GL192795.1 samtools variation 379963 379963 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 63 ; known ; synonymous GL192795.1 samtools variation 758437 758437 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 90 ; unknown ; synonymous GL192795.1 samtools variation 759708 759708 . . . alleles " G A"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; synonymous GL192795.1 samtools variation 1143408 1143408 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 45 ; unknown ; N/A GL192795.1 samtools variation 1145136 1145136 . . . alleles " T A"; frequencies " 0.568421052631579 0.431578947368421"; depth 95 ; unknown ; N/A GL192795.1 samtools variation 1146347 1146347 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192795.1 samtools variation 1196314 1196314 . . . alleles " G A"; frequencies " 0.576086956521739 0.423913043478261"; depth 92 ; unknown ; synonymous GL192795.1 samtools variation 1247752 1247752 . . . alleles " T C"; frequencies " 0.425 0.575"; depth 80 ; unknown ; synonymous GL192795.1 samtools variation 1249411 1249411 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; synonymous GL192795.1 samtools variation 1251663 1251663 . . . alleles " C T"; frequencies " 0.293103448275862 0.706896551724138"; depth 58 ; unknown ; N/A GL192795.1 samtools variation 1251670 1251670 . . . alleles " A C"; frequencies " 0.638888888888889 0.361111111111111"; depth 72 ; unknown ; N/A GL192795.1 samtools variation 1251790 1251790 . . . alleles " G A"; frequencies " 0.590361445783133 0.409638554216867"; depth 83 ; unknown ; N/A GL192795.1 samtools variation 1252602 1252602 . . . alleles " G A"; frequencies " 0.736111111111111 0.263888888888889"; depth 72 ; unknown ; N/A GL192795.1 samtools variation 1252881 1252881 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL192795.1 samtools variation 1252972 1252972 . . . alleles " T C"; frequencies " 0.675 0.325"; depth 80 ; unknown ; N/A GL192795.1 samtools variation 1253268 1253268 . . . alleles " G A"; frequencies " 0.378787878787879 0.621212121212121"; depth 66 ; unknown ; N/A GL192795.1 samtools variation 1260683 1260683 . . . alleles " G A"; frequencies " 0.35 0.65"; depth 20 ; unknown ; synonymous GL192795.1 samtools variation 1271097 1271097 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192795.1 samtools variation 1287491 1287491 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 91 ; unknown ; N/A GL192795.1 samtools variation 1306706 1306706 . . . alleles " G A"; frequencies " 0.503267973856209 0.496732026143791"; depth 306 ; unknown ; non-synonymous GL192795.1 samtools variation 1311296 1311296 . . . alleles " G A"; frequencies " 0.6784140969163 0.3215859030837"; depth 227 ; unknown ; N/A GL192795.1 samtools variation 1312674 1312674 . . . alleles " A T"; frequencies " 0.517857142857143 0.482142857142857"; depth 112 ; unknown ; N/A GL192795.1 samtools variation 1312813 1312813 . . . alleles " C A"; frequencies " 0.559322033898305 0.440677966101695"; depth 118 ; unknown ; N/A GL192795.1 samtools variation 1312843 1312843 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 99 ; unknown ; N/A GL192795.1 samtools variation 1377305 1377305 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; synonymous GL192795.1 samtools variation 1402411 1402411 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192797.1 samtools variation 38230 38230 . . . alleles " A G"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; known ; synonymous GL192797.1 samtools variation 1028894 1028894 . . . alleles " T G"; frequencies " 0.759825327510917 0.240174672489083"; depth 229 ; known ; synonymous GL192797.1 samtools variation 1031640 1031640 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192797.1 samtools variation 1034566 1034566 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192797.1 samtools variation 1034737 1034737 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192797.1 samtools variation 1040449 1040449 . . . alleles " G C"; frequencies " 0.462585034013605 0.537414965986395"; depth 294 ; known ; N/A GL192797.1 samtools variation 1319736 1319736 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192798.1 samtools variation 841794 841794 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192798.1 samtools variation 924604 924604 . . . alleles " T C"; frequencies " 0.78125 0.21875"; depth 224 ; unknown ; synonymous GL192798.1 samtools variation 1150221 1150221 . . . alleles " A C"; frequencies " 0.438095238095238 0.561904761904762"; depth 105 ; known ; synonymous GL192799.1 samtools variation 103012 103012 . . . alleles " G C"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL192799.1 samtools variation 103701 103701 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192799.1 samtools variation 110350 110350 . . . alleles " C T"; frequencies " 0.202702702702703 0.797297297297297"; depth 74 ; unknown ; N/A GL192799.1 samtools variation 110715 110715 . . . alleles " T C"; frequencies " 0.34375 0.65625"; depth 64 ; unknown ; N/A GL192799.1 samtools variation 110933 110933 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; unknown ; N/A GL192799.1 samtools variation 112681 112681 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192799.1 samtools variation 117757 117757 . . . alleles " C A"; frequencies " 0.652083333333333 0.347916666666667"; depth 480 ; unknown ; N/A GL192799.1 samtools variation 117765 117765 . . . alleles " C G"; frequencies " 0.669047619047619 0.330952380952381"; depth 420 ; unknown ; N/A GL192799.1 samtools variation 118883 118883 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL192799.1 samtools variation 122852 122852 . . . alleles " G A"; frequencies " 0.494949494949495 0.505050505050505"; depth 198 ; unknown ; synonymous GL192799.1 samtools variation 122970 122970 . . . alleles " C T"; frequencies " 0.491869918699187 0.508130081300813"; depth 246 ; unknown ; N/A GL192799.1 samtools variation 124203 124203 . . . alleles " A G"; frequencies " 0.220883534136546 0.779116465863454"; depth 249 ; unknown ; synonymous GL192799.1 samtools variation 124783 124783 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192799.1 samtools variation 125334 125334 . . . alleles " T C"; frequencies " 0.55421686746988 0.44578313253012"; depth 83 ; unknown ; synonymous GL192799.1 samtools variation 140318 140318 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; synonymous GL192799.1 samtools variation 159936 159936 . . . alleles " C T"; frequencies " 0.547619047619048 0.452380952380952"; depth 42 ; unknown ; N/A GL192799.1 samtools variation 161090 161090 . . . alleles " A G"; frequencies " 0.64 0.36"; depth 50 ; unknown ; N/A GL192799.1 samtools variation 166788 166788 . . . alleles " T C"; frequencies " 0.68 0.32"; depth 125 ; unknown ; synonymous GL192799.1 samtools variation 166800 166800 . . . alleles " T G"; frequencies " 0.664516129032258 0.335483870967742"; depth 155 ; unknown ; synonymous GL192799.1 samtools variation 168087 168087 . . . alleles " T C"; frequencies " 0.614093959731544 0.385906040268456"; depth 298 ; unknown ; synonymous GL192799.1 samtools variation 178965 178965 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; unknown ; synonymous GL192799.1 samtools variation 258978 258978 . . . alleles " C A"; frequencies " 0.55 0.433333333333333"; depth 60 ; unknown ; non-synonymous GL192799.1 samtools variation 258979 258979 . . . alleles " C T"; frequencies " 0.557377049180328 0.442622950819672"; depth 61 ; unknown ; synonymous GL192799.1 samtools variation 269621 269621 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 30 ; unknown ; synonymous GL192799.1 samtools variation 269718 269718 . . . alleles " A G"; frequencies " 0.52 0.48"; depth 25 ; unknown ; non-synonymous GL192799.1 samtools variation 269831 269831 . . . alleles " C A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192799.1 samtools variation 271813 271813 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; synonymous GL192799.1 samtools variation 274117 274117 . . . alleles " T G"; frequencies " 0.671232876712329 0.328767123287671"; depth 73 ; unknown ; N/A GL192799.1 samtools variation 274222 274222 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 51 ; unknown ; N/A GL192799.1 samtools variation 275481 275481 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192799.1 samtools variation 276101 276101 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; synonymous GL192799.1 samtools variation 288856 288856 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 56 ; unknown ; N/A GL192799.1 samtools variation 300553 300553 . . . alleles " A G"; frequencies " 0.306818181818182 0.693181818181818"; depth 264 ; unknown ; non-synonymous GL192799.1 samtools variation 308362 308362 . . . alleles " G A"; frequencies " 0.645833333333333 0.354166666666667"; depth 288 ; unknown ; synonymous GL192799.1 samtools variation 311735 311735 . . . alleles " T A"; frequencies " 0.707482993197279 0.292517006802721"; depth 147 ; unknown ; N/A GL192799.1 samtools variation 443522 443522 . . . alleles " G A"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; unknown ; N/A GL192799.1 samtools variation 471033 471033 . . . alleles " G A"; frequencies " 0.794642857142857 0.205357142857143"; depth 112 ; unknown ; N/A GL192799.1 samtools variation 514320 514320 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192799.1 samtools variation 875589 875589 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 44 ; unknown ; non-synonymous GL192799.1 samtools variation 875770 875770 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; synonymous GL192799.1 samtools variation 876001 876001 . . . alleles " A T"; frequencies " 0.324324324324324 0.675675675675676"; depth 111 ; unknown ; N/A GL192799.1 samtools variation 876106 876106 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 48 ; unknown ; N/A GL192799.1 samtools variation 880059 880059 . . . alleles " G A"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; unknown ; non-synonymous GL192799.1 samtools variation 880739 880739 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL192799.1 samtools variation 883758 883758 . . . alleles " C T"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL192799.1 samtools variation 886135 886135 . . . alleles " G A"; frequencies " 0.336927223719677 0.663072776280323"; depth 371 ; unknown ; N/A GL192799.1 samtools variation 886195 886195 . . . alleles " G C"; frequencies " 0.280973451327434 0.719026548672566"; depth 452 ; unknown ; N/A GL192799.1 samtools variation 886256 886256 . . . alleles " A C"; frequencies " 0.436440677966102 0.563559322033898"; depth 472 ; unknown ; N/A GL192799.1 samtools variation 886281 886281 . . . alleles " G A"; frequencies " 0.460176991150442 0.539823008849557"; depth 339 ; unknown ; N/A GL192799.1 samtools variation 909862 909862 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 30 ; unknown ; synonymous GL192799.1 samtools variation 910974 910974 . . . alleles " A G"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192799.1 samtools variation 911046 911046 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192799.1 samtools variation 914378 914378 . . . alleles " T C"; frequencies " 0.567567567567568 0.432432432432432"; depth 74 ; unknown ; N/A GL192799.1 samtools variation 915928 915928 . . . alleles " A G"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192799.1 samtools variation 971945 971945 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; non-synonymous GL192799.1 samtools variation 975707 975707 . . . alleles " C T"; frequencies " 0.681159420289855 0.318840579710145"; depth 69 ; unknown ; synonymous GL192799.1 samtools variation 977500 977500 . . . alleles " T C"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; unknown ; non-synonymous GL192799.1 samtools variation 984110 984110 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL192799.1 samtools variation 1003258 1003258 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192799.1 samtools variation 1004196 1004196 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; N/A GL192799.1 samtools variation 1004550 1004550 . . . alleles " G T"; frequencies " 0.58 0.42"; depth 50 ; unknown ; N/A GL192799.1 samtools variation 1007468 1007468 . . . alleles " A C"; frequencies " 0.783132530120482 0.216867469879518"; depth 83 ; unknown ; synonymous GL192799.1 samtools variation 1010167 1010167 . . . alleles " C G"; frequencies " 0.725663716814159 0.274336283185841"; depth 113 ; unknown ; N/A GL192799.1 samtools variation 1011292 1011292 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192799.1 samtools variation 1014453 1014453 . . . alleles " G A"; frequencies " 0.7421875 0.2578125"; depth 128 ; unknown ; synonymous GL192799.1 samtools variation 1020395 1020395 . . . alleles " T G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192799.1 samtools variation 1060874 1060874 . . . alleles " T C"; frequencies " 0.473958333333333 0.526041666666667"; depth 192 ; known ; non-synonymous GL192799.1 samtools variation 1064732 1064732 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192799.1 samtools variation 1071354 1071354 . . . alleles " G A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192799.1 samtools variation 1074663 1074663 . . . alleles " T C"; frequencies " 0.46031746031746 0.53968253968254"; depth 126 ; unknown ; synonymous GL192799.1 samtools variation 1074807 1074807 . . . alleles " C T"; frequencies " 0.461038961038961 0.538961038961039"; depth 308 ; unknown ; N/A GL192799.1 samtools variation 1074975 1074975 . . . alleles " A G"; frequencies " 0.58974358974359 0.41025641025641"; depth 429 ; unknown ; N/A GL192799.1 samtools variation 1075643 1075643 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; synonymous GL192799.1 samtools variation 1076014 1076014 . . . alleles " T C"; frequencies " 0.582677165354331 0.417322834645669"; depth 127 ; unknown ; N/A GL192799.1 samtools variation 1076046 1076046 . . . alleles " C T"; frequencies " 0.573033707865168 0.426966292134831"; depth 178 ; known ; N/A GL192799.1 samtools variation 1077265 1077265 . . . alleles " C T"; frequencies " 0.786885245901639 0.213114754098361"; depth 61 ; unknown ; non-synonymous GL192799.1 samtools variation 1077658 1077658 . . . alleles " C T"; frequencies " 0.691358024691358 0.308641975308642"; depth 324 ; unknown ; N/A GL192799.1 samtools variation 1103983 1103983 . . . alleles " G A"; frequencies " 0.683397683397683 0.316602316602317"; depth 518 ; unknown ; N/A GL192799.1 samtools variation 1123412 1123412 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192799.1 samtools variation 1145196 1145196 . . . alleles " T C"; frequencies " 0.276595744680851 0.723404255319149"; depth 47 ; known ; N/A GL192799.1 samtools variation 1145276 1145276 . . . alleles " C T"; frequencies " 0.702127659574468 0.297872340425532"; depth 47 ; unknown ; N/A GL192799.1 samtools variation 1145304 1145304 . . . alleles " C T"; frequencies " 0.382352941176471 0.617647058823529"; depth 34 ; known ; N/A GL192799.1 samtools variation 1145866 1145866 . . . alleles " A G"; frequencies " 0.28125 0.71875"; depth 32 ; known ; N/A GL192799.1 samtools variation 1151335 1151335 . . . alleles " A G"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; synonymous GL192799.1 samtools variation 1152044 1152044 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; synonymous GL192799.1 samtools variation 1298547 1298547 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 39 ; unknown ; N/A GL192799.1 samtools variation 1302273 1302273 . . . alleles " G A"; frequencies " 0.783783783783784 0.216216216216216"; depth 74 ; unknown ; N/A GL192799.1 samtools variation 1303116 1303116 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 99 ; unknown ; N/A GL192799.1 samtools variation 1307941 1307941 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 108 ; unknown ; N/A GL192799.1 samtools variation 1309818 1309818 . . . alleles " C T"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; unknown ; N/A GL192799.1 samtools variation 1310102 1310102 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 2509 ; unknown ; synonymous GL192799.1 samtools variation 1310414 1310414 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 54 ; unknown ; N/A GL192799.1 samtools variation 1310641 1310641 . . . alleles " A G"; frequencies " 0.573984526112186 0.425531914893617"; depth 2068 ; unknown ; N/A GL192799.1 samtools variation 1312424 1312424 . . . alleles " C T"; frequencies " 0.79746835443038 0.20253164556962"; depth 79 ; unknown ; N/A GL192799.1 samtools variation 1313341 1313341 . . . alleles " C T"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; N/A GL192799.1 samtools variation 1314103 1314103 . . . alleles " G A"; frequencies " 0.659574468085106 0.340425531914894"; depth 188 ; unknown ; synonymous GL192799.1 samtools variation 1314818 1314818 . . . alleles " C T"; frequencies " 0.486486486486487 0.513513513513513"; depth 74 ; unknown ; N/A GL192799.1 samtools variation 1314972 1314972 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192799.1 samtools variation 1334837 1334837 . . . alleles " C G"; frequencies " 0.364583333333333 0.635416666666667"; depth 192 ; unknown ; N/A GL192799.1 samtools variation 1349133 1349133 . . . alleles " A G"; frequencies " 0.209803921568627 0.670588235294118"; depth 510 ; unknown ; synonymous GL192799.1 samtools variation 1350804 1350804 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL192799.1 samtools variation 1351096 1351096 . . . alleles " C T"; frequencies " 0.384995064165844 0.615004935834156"; depth 1013 ; unknown ; synonymous GL192799.1 samtools variation 1351355 1351355 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL192799.1 samtools variation 1351990 1351990 . . . alleles " T A"; frequencies " 0.490196078431373 0.509803921568627"; depth 51 ; unknown ; N/A GL192799.1 samtools variation 1352019 1352019 . . . alleles " T C"; frequencies " 0.232142857142857 0.767857142857143"; depth 56 ; unknown ; non-synonymous GL192800.1 samtools variation 102622 102622 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; synonymous GL192800.1 samtools variation 333917 333917 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192800.1 samtools variation 334153 334153 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192801.1 samtools variation 336622 336622 . . . alleles " C T"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; synonymous GL192801.1 samtools variation 519469 519469 . . . alleles " G C"; frequencies " 0.370967741935484 0.629032258064516"; depth 62 ; unknown ; synonymous GL192801.1 samtools variation 529902 529902 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192801.1 samtools variation 608672 608672 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192801.1 samtools variation 610406 610406 . . . alleles " C T"; frequencies " 0.746835443037975 0.253164556962025"; depth 79 ; unknown ; non-synonymous GL192801.1 samtools variation 625316 625316 . . . alleles " C T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192801.1 samtools variation 719516 719516 . . . alleles " G C"; frequencies " 0.793456032719836 0.206543967280164"; depth 489 ; unknown ; N/A GL192801.1 samtools variation 719854 719854 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192801.1 samtools variation 729336 729336 . . . alleles " A C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192801.1 samtools variation 730294 730294 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192801.1 samtools variation 754992 754992 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 51 ; unknown ; synonymous GL192801.1 samtools variation 755575 755575 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192801.1 samtools variation 755814 755814 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 32 ; unknown ; synonymous GL192801.1 samtools variation 758822 758822 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192801.1 samtools variation 763191 763191 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; known ; synonymous GL192801.1 samtools variation 768478 768478 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; known ; non-synonymous GL192801.1 samtools variation 769171 769171 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; synonymous GL192801.1 samtools variation 774643 774643 . . . alleles " C A"; frequencies " 0.326923076923077 0.673076923076923"; depth 52 ; unknown ; N/A GL192801.1 samtools variation 782441 782441 . . . alleles " C T"; frequencies " 0.740740740740741 0.259259259259259"; depth 108 ; known ; N/A GL192801.1 samtools variation 786666 786666 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL192801.1 samtools variation 792467 792467 . . . alleles " G A"; frequencies " 0.662721893491124 0.337278106508876"; depth 169 ; unknown ; N/A GL192801.1 samtools variation 800476 800476 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192801.1 samtools variation 800603 800603 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 24 ; known ; N/A GL192801.1 samtools variation 802463 802463 . . . alleles " T C"; frequencies " 0.529801324503311 0.470198675496689"; depth 453 ; known ; N/A GL192801.1 samtools variation 802792 802792 . . . alleles " T A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192801.1 samtools variation 806708 806708 . . . alleles " A C"; frequencies " 0.718826405867971 0.281173594132029"; depth 409 ; unknown ; non-synonymous GL192801.1 samtools variation 808583 808583 . . . alleles " A G"; frequencies " 0.79746835443038 0.20253164556962"; depth 79 ; unknown ; N/A GL192801.1 samtools variation 816076 816076 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192801.1 samtools variation 816090 816090 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192801.1 samtools variation 819518 819518 . . . alleles " A G"; frequencies " 0.645161290322581 0.354838709677419"; depth 62 ; unknown ; synonymous GL192801.1 samtools variation 819686 819686 . . . alleles " T C"; frequencies " 0.616438356164384 0.383561643835616"; depth 73 ; unknown ; synonymous GL192801.1 samtools variation 821136 821136 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192801.1 samtools variation 822762 822762 . . . alleles " T C"; frequencies " 0.52760736196319 0.47239263803681"; depth 163 ; known ; N/A GL192801.1 samtools variation 824998 824998 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; synonymous GL192801.1 samtools variation 827632 827632 . . . alleles " T C"; frequencies " 0.776119402985075 0.223880597014925"; depth 67 ; unknown ; N/A GL192801.1 samtools variation 827660 827660 . . . alleles " G C"; frequencies " 0.769230769230769 0.230769230769231"; depth 65 ; unknown ; N/A GL192801.1 samtools variation 827699 827699 . . . alleles " T C"; frequencies " 0.796296296296296 0.203703703703704"; depth 54 ; unknown ; N/A GL192801.1 samtools variation 828482 828482 . . . alleles " A G"; frequencies " 0.771084337349398 0.228915662650602"; depth 83 ; unknown ; N/A GL192801.1 samtools variation 828578 828578 . . . alleles " T C"; frequencies " 0.56 0.44"; depth 50 ; unknown ; synonymous GL192801.1 samtools variation 828630 828630 . . . alleles " C G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192801.1 samtools variation 829238 829238 . . . alleles " T G"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL192801.1 samtools variation 829915 829915 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 60 ; unknown ; synonymous GL192801.1 samtools variation 829960 829960 . . . alleles " C T"; frequencies " 0.755102040816326 0.244897959183673"; depth 49 ; unknown ; synonymous GL192801.1 samtools variation 830491 830491 . . . alleles " C A"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL192801.1 samtools variation 830627 830627 . . . alleles " C T"; frequencies " 0.549019607843137 0.450980392156863"; depth 51 ; known ; N/A GL192801.1 samtools variation 832906 832906 . . . alleles " G A"; frequencies " 0.688963210702341 0.311036789297659"; depth 299 ; unknown ; non-synonymous GL192801.1 samtools variation 833079 833079 . . . alleles " A G"; frequencies " 0.296116504854369 0.703883495145631"; depth 206 ; known ; N/A GL192801.1 samtools variation 833758 833758 . . . alleles " A G"; frequencies " 0.366120218579235 0.633879781420765"; depth 183 ; known ; N/A GL192801.1 samtools variation 834219 834219 . . . alleles " T C"; frequencies " 0.237967914438503 0.762032085561497"; depth 374 ; known ; synonymous GL192801.1 samtools variation 834773 834773 . . . alleles " T C"; frequencies " 0.34703196347032 0.65296803652968"; depth 219 ; known ; N/A GL192801.1 samtools variation 834796 834796 . . . alleles " A G"; frequencies " 0.392670157068063 0.607329842931937"; depth 191 ; known ; N/A GL192801.1 samtools variation 834944 834944 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 196 ; known ; synonymous GL192801.1 samtools variation 835531 835531 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 44 ; known ; N/A GL192801.1 samtools variation 835892 835892 . . . alleles " C G"; frequencies " 0.724137931034483 0.275862068965517"; depth 174 ; known ; N/A GL192801.1 samtools variation 835976 835976 . . . alleles " A G"; frequencies " 0.57286432160804 0.42713567839196"; depth 199 ; known ; N/A GL192801.1 samtools variation 836348 836348 . . . alleles " T G"; frequencies " 0.611111111111111 0.388888888888889"; depth 126 ; known ; N/A GL192801.1 samtools variation 837256 837256 . . . alleles " G T"; frequencies " 0.550561797752809 0.449438202247191"; depth 356 ; known ; N/A GL192801.1 samtools variation 837424 837424 . . . alleles " C T"; frequencies " 0.456521739130435 0.543478260869565"; depth 92 ; known ; N/A GL192801.1 samtools variation 837714 837714 . . . alleles " G A"; frequencies " 0.471074380165289 0.528925619834711"; depth 121 ; known ; N/A GL192801.1 samtools variation 837738 837738 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 152 ; known ; N/A GL192801.1 samtools variation 838005 838005 . . . alleles " A G"; frequencies " 0.392156862745098 0.607843137254902"; depth 102 ; known ; N/A GL192801.1 samtools variation 838730 838730 . . . alleles " G A"; frequencies " 0.617021276595745 0.382978723404255"; depth 47 ; known ; N/A GL192801.1 samtools variation 844631 844631 . . . alleles " C A"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; known ; N/A GL192801.1 samtools variation 845955 845955 . . . alleles " G C"; frequencies " 0.56 0.44"; depth 125 ; known ; N/A GL192801.1 samtools variation 846102 846102 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 98 ; unknown ; N/A GL192801.1 samtools variation 846211 846211 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 57 ; known ; N/A GL192801.1 samtools variation 846221 846221 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 46 ; known ; N/A GL192801.1 samtools variation 846337 846337 . . . alleles " A G"; frequencies " 0.564575645756458 0.435424354243542"; depth 271 ; known ; N/A GL192801.1 samtools variation 847440 847440 . . . alleles " G A"; frequencies " 0.765536723163842 0.234463276836158"; depth 354 ; unknown ; N/A GL192801.1 samtools variation 847652 847652 . . . alleles " T A"; frequencies " 0.586776859504132 0.413223140495868"; depth 121 ; known ; N/A GL192801.1 samtools variation 849120 849120 . . . alleles " T C"; frequencies " 0.251968503937008 0.748031496062992"; depth 127 ; known ; N/A GL192801.1 samtools variation 849467 849467 . . . alleles " T A"; frequencies " 0.384615384615385 0.615384615384615"; depth 39 ; known ; N/A GL192801.1 samtools variation 850414 850414 . . . alleles " C A"; frequencies " 0.68503937007874 0.31496062992126"; depth 127 ; unknown ; N/A GL192801.1 samtools variation 855887 855887 . . . alleles " A G"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL192801.1 samtools variation 856312 856312 . . . alleles " T C"; frequencies " 0.37 0.63"; depth 100 ; unknown ; non-synonymous GL192801.1 samtools variation 856340 856340 . . . alleles " A G"; frequencies " 0.358490566037736 0.641509433962264"; depth 106 ; unknown ; synonymous GL192801.1 samtools variation 860326 860326 . . . alleles " A C"; frequencies " 0.270588235294118 0.729411764705882"; depth 85 ; known ; N/A GL192801.1 samtools variation 860331 860331 . . . alleles " G T"; frequencies " 0.738636363636364 0.261363636363636"; depth 88 ; known ; N/A GL192801.1 samtools variation 861381 861381 . . . alleles " A G"; frequencies " 0.223776223776224 0.776223776223776"; depth 286 ; known ; N/A GL192801.1 samtools variation 865824 865824 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192801.1 samtools variation 866025 866025 . . . alleles " C G"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; non-synonymous GL192801.1 samtools variation 881059 881059 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192801.1 samtools variation 881149 881149 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192801.1 samtools variation 881329 881329 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192801.1 samtools variation 883982 883982 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 30 ; unknown ; N/A GL192801.1 samtools variation 884259 884259 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL192801.1 samtools variation 884388 884388 . . . alleles " C T"; frequencies " 0.686153846153846 0.310769230769231"; depth 325 ; unknown ; synonymous GL192801.1 samtools variation 884759 884759 . . . alleles " C T"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL192801.1 samtools variation 885199 885199 . . . alleles " T G"; frequencies " 0.708333333333333 0.291666666666667"; depth 336 ; unknown ; N/A GL192801.1 samtools variation 893432 893432 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 25 ; unknown ; non-synonymous GL192801.1 samtools variation 897741 897741 . . . alleles " G C"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; synonymous GL192801.1 samtools variation 898304 898304 . . . alleles " G T"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; known ; synonymous GL192801.1 samtools variation 898759 898759 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192801.1 samtools variation 941442 941442 . . . alleles " A G"; frequencies " 0.459459459459459 0.540540540540541"; depth 74 ; unknown ; synonymous GL192801.1 samtools variation 1192639 1192639 . . . alleles " C G"; frequencies " 0.242105263157895 0.757894736842105"; depth 95 ; known ; N/A GL192801.1 samtools variation 1192883 1192883 . . . alleles " G A"; frequencies " 0.245283018867925 0.754716981132076"; depth 53 ; known ; N/A GL192801.1 samtools variation 1195219 1195219 . . . alleles " A G"; frequencies " 0.796992481203007 0.203007518796992"; depth 133 ; known ; synonymous GL192801.1 samtools variation 1223773 1223773 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192801.1 samtools variation 1224577 1224577 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192801.1 samtools variation 1225524 1225524 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192801.1 samtools variation 1266834 1266834 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 156 ; unknown ; synonymous GL192801.1 samtools variation 1267785 1267785 . . . alleles " G A"; frequencies " 0.725 0.275"; depth 80 ; known ; non-synonymous GL192801.1 samtools variation 1348271 1348271 . . . alleles " C T"; frequencies " 0.716262975778547 0.283737024221453"; depth 578 ; unknown ; N/A GL192801.1 samtools variation 1348352 1348352 . . . alleles " A G"; frequencies " 0.2125 0.7875"; depth 400 ; known ; N/A GL192801.1 samtools variation 1351390 1351390 . . . alleles " C T"; frequencies " 0.747252747252747 0.252747252747253"; depth 182 ; unknown ; N/A GL192802.1 samtools variation 331204 331204 . . . alleles " C A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192802.1 samtools variation 430198 430198 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192802.1 samtools variation 432043 432043 . . . alleles " C A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192802.1 samtools variation 432946 432946 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192802.1 samtools variation 433248 433248 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192802.1 samtools variation 433285 433285 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192802.1 samtools variation 447120 447120 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192802.1 samtools variation 451629 451629 . . . alleles " G C"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL192802.1 samtools variation 452891 452891 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192802.1 samtools variation 453669 453669 . . . alleles " G A"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL192802.1 samtools variation 511180 511180 . . . alleles " A G"; frequencies " 0.600741656365884 0.398846312319736"; depth 2427 ; unknown ; N/A GL192802.1 samtools variation 516779 516779 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; N/A GL192802.1 samtools variation 526121 526121 . . . alleles " A C"; frequencies " 0.7625 0.2375"; depth 80 ; unknown ; N/A GL192802.1 samtools variation 527206 527206 . . . alleles " C G"; frequencies " 0.48936170212766 0.51063829787234"; depth 329 ; unknown ; N/A GL192802.1 samtools variation 538104 538104 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192802.1 samtools variation 539435 539435 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192802.1 samtools variation 549953 549953 . . . alleles " A G"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL192802.1 samtools variation 554938 554938 . . . alleles " G A"; frequencies " 0.763636363636364 0.236363636363636"; depth 55 ; unknown ; N/A GL192802.1 samtools variation 560974 560974 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192802.1 samtools variation 563589 563589 . . . alleles " G T"; frequencies " 0.619047619047619 0.333333333333333"; depth 21 ; unknown ; N/A GL192802.1 samtools variation 565790 565790 . . . alleles " G C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL192802.1 samtools variation 566304 566304 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192802.1 samtools variation 568802 568802 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192802.1 samtools variation 579846 579846 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192802.1 samtools variation 580774 580774 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192802.1 samtools variation 866938 866938 . . . alleles " T C"; frequencies " 0.366834170854271 0.633165829145729"; depth 199 ; unknown ; synonymous GL192802.1 samtools variation 869450 869450 . . . alleles " C T"; frequencies " 0.594827586206897 0.405172413793103"; depth 116 ; unknown ; N/A GL192802.1 samtools variation 869888 869888 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192802.1 samtools variation 884043 884043 . . . alleles " G A"; frequencies " 0.775 0.225"; depth 40 ; unknown ; synonymous GL192802.1 samtools variation 1190754 1190754 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192803.1 samtools variation 214045 214045 . . . alleles " A T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192803.1 samtools variation 214540 214540 . . . alleles " G C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192803.1 samtools variation 215433 215433 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192803.1 samtools variation 220385 220385 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192803.1 samtools variation 220489 220489 . . . alleles " T C"; frequencies " 0.633333333333333 0.333333333333333"; depth 30 ; unknown ; N/A GL192803.1 samtools variation 220860 220860 . . . alleles " C T"; frequencies " 0.216216216216216 0.783783783783784"; depth 37 ; known ; N/A GL192803.1 samtools variation 220965 220965 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192803.1 samtools variation 220972 220972 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192803.1 samtools variation 221152 221152 . . . alleles " T G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192803.1 samtools variation 525945 525945 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; synonymous GL192803.1 samtools variation 542962 542962 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL192803.1 samtools variation 543658 543658 . . . alleles " T G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192803.1 samtools variation 543921 543921 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192803.1 samtools variation 544087 544087 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL192803.1 samtools variation 1048425 1048425 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; synonymous GL192803.1 samtools variation 1049292 1049292 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; synonymous GL192805.1 samtools variation 27862 27862 . . . alleles " G A"; frequencies " 0.609154929577465 0.390845070422535"; depth 284 ; known ; synonymous GL192805.1 samtools variation 30842 30842 . . . alleles " G C"; frequencies " 0.297297297297297 0.702702702702703"; depth 111 ; known ; synonymous GL192805.1 samtools variation 31879 31879 . . . alleles " G C"; frequencies " 0.632508833922262 0.367491166077739"; depth 283 ; known ; synonymous GL192805.1 samtools variation 33311 33311 . . . alleles " G T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; N/A GL192805.1 samtools variation 34161 34161 . . . alleles " G A"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; known ; N/A GL192805.1 samtools variation 34172 34172 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL192805.1 samtools variation 34299 34299 . . . alleles " A G"; frequencies " 0.651515151515151 0.345454545454545"; depth 330 ; known ; synonymous GL192805.1 samtools variation 35508 35508 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 161 ; known ; synonymous GL192805.1 samtools variation 37254 37254 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192805.1 samtools variation 40688 40688 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192805.1 samtools variation 45726 45726 . . . alleles " A G"; frequencies " 0.683229813664596 0.316770186335404"; depth 161 ; known ; synonymous GL192805.1 samtools variation 45901 45901 . . . alleles " C T"; frequencies " 0.392857142857143 0.607142857142857"; depth 84 ; known ; non-synonymous GL192805.1 samtools variation 45995 45995 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 63 ; known ; non-synonymous GL192805.1 samtools variation 46875 46875 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192805.1 samtools variation 81991 81991 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192805.1 samtools variation 138592 138592 . . . alleles " G C"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; synonymous GL192805.1 samtools variation 155621 155621 . . . alleles " G A"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL192807.1 samtools variation 9845 9845 . . . alleles " C T"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL192807.1 samtools variation 11131 11131 . . . alleles " A G"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL192807.1 samtools variation 93375 93375 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192807.1 samtools variation 93984 93984 . . . alleles " A T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192807.1 samtools variation 96895 96895 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 39 ; known ; N/A GL192807.1 samtools variation 98727 98727 . . . alleles " T C"; frequencies " 0.205128205128205 0.794871794871795"; depth 39 ; known ; N/A GL192807.1 samtools variation 98794 98794 . . . alleles " G A"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL192807.1 samtools variation 99548 99548 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL192807.1 samtools variation 99870 99870 . . . alleles " A G"; frequencies " 0.487179487179487 0.512820512820513"; depth 39 ; known ; N/A GL192807.1 samtools variation 100167 100167 . . . alleles " A G"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192807.1 samtools variation 203284 203284 . . . alleles " T C"; frequencies " 0.557595993322204 0.442404006677796"; depth 599 ; known ; N/A GL192807.1 samtools variation 203397 203397 . . . alleles " G T"; frequencies " 0.795255930087391 0.203495630461923"; depth 801 ; unknown ; N/A GL192807.1 samtools variation 234990 234990 . . . alleles " G A"; frequencies " 0.706666666666667 0.293333333333333"; depth 75 ; unknown ; synonymous GL192807.1 samtools variation 258081 258081 . . . alleles " A G"; frequencies " 0.452830188679245 0.547169811320755"; depth 159 ; known ; N/A GL192807.1 samtools variation 260859 260859 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192807.1 samtools variation 277938 277938 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192807.1 samtools variation 289474 289474 . . . alleles " T C"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; known ; N/A GL192807.1 samtools variation 306459 306459 . . . alleles " A C"; frequencies " 0.606060606060606 0.393939393939394"; depth 429 ; known ; N/A GL192807.1 samtools variation 321567 321567 . . . alleles " C T"; frequencies " 0.557432432432432 0.442567567567568"; depth 296 ; known ; non-synonymous GL192807.1 samtools variation 388616 388616 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 70 ; known ; N/A GL192807.1 samtools variation 389069 389069 . . . alleles " G A"; frequencies " 0.578571428571429 0.421428571428571"; depth 140 ; known ; N/A GL192807.1 samtools variation 393620 393620 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192807.1 samtools variation 407066 407066 . . . alleles " T C"; frequencies " 0.331210191082803 0.668789808917197"; depth 157 ; known ; synonymous GL192807.1 samtools variation 442694 442694 . . . alleles " A G"; frequencies " 0.604651162790698 0.395348837209302"; depth 43 ; unknown ; synonymous GL192807.1 samtools variation 960776 960776 . . . alleles " A G"; frequencies " 0.454545454545455 0.5"; depth 22 ; known ; N/A GL192807.1 samtools variation 970781 970781 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192807.1 samtools variation 1011475 1011475 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192807.1 samtools variation 1060763 1060763 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192807.1 samtools variation 1208900 1208900 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192807.1 samtools variation 1220504 1220504 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192807.1 samtools variation 1220577 1220577 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192807.1 samtools variation 1279055 1279055 . . . alleles " A G"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL192807.1 samtools variation 1280357 1280357 . . . alleles " T G"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192807.1 samtools variation 1283336 1283336 . . . alleles " C T"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; known ; N/A GL192807.1 samtools variation 1289245 1289245 . . . alleles " G A"; frequencies " 0.53125 0.46875"; depth 32 ; known ; N/A GL192808.1 samtools variation 157536 157536 . . . alleles " A C"; frequencies " 0.616822429906542 0.383177570093458"; depth 107 ; unknown ; non-synonymous GL192808.1 samtools variation 284889 284889 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192808.1 samtools variation 284920 284920 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192808.1 samtools variation 289130 289130 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192808.1 samtools variation 360695 360695 . . . alleles " G A"; frequencies " 0.650273224043716 0.349726775956284"; depth 183 ; unknown ; N/A GL192808.1 samtools variation 569517 569517 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192808.1 samtools variation 581346 581346 . . . alleles " T C"; frequencies " 0.768115942028985 0.231884057971014"; depth 69 ; known ; N/A GL192808.1 samtools variation 586982 586982 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL192808.1 samtools variation 597003 597003 . . . alleles " C T"; frequencies " 0.270833333333333 0.729166666666667"; depth 48 ; unknown ; N/A GL192808.1 samtools variation 597105 597105 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192808.1 samtools variation 598552 598552 . . . alleles " A G"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; unknown ; N/A GL192808.1 samtools variation 598566 598566 . . . alleles " C A"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; unknown ; N/A GL192808.1 samtools variation 603417 603417 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192808.1 samtools variation 608992 608992 . . . alleles " C G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL192808.1 samtools variation 609045 609045 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; known ; N/A GL192808.1 samtools variation 610099 610099 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192808.1 samtools variation 615839 615839 . . . alleles " T G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192808.1 samtools variation 615844 615844 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192808.1 samtools variation 616029 616029 . . . alleles " C G"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; known ; N/A GL192808.1 samtools variation 616866 616866 . . . alleles " C T"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; known ; N/A GL192808.1 samtools variation 617254 617254 . . . alleles " C T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192808.1 samtools variation 617870 617870 . . . alleles " C T"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192808.1 samtools variation 617871 617871 . . . alleles " G T"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192808.1 samtools variation 618783 618783 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL192808.1 samtools variation 621456 621456 . . . alleles " C G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192808.1 samtools variation 624133 624133 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192808.1 samtools variation 636554 636554 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL192808.1 samtools variation 638509 638509 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192808.1 samtools variation 673421 673421 . . . alleles " T G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192808.1 samtools variation 675941 675941 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 70 ; unknown ; synonymous GL192808.1 samtools variation 679853 679853 . . . alleles " G T"; frequencies " 0.633333333333333 0.366666666666667"; depth 120 ; unknown ; N/A GL192808.1 samtools variation 687036 687036 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192808.1 samtools variation 687083 687083 . . . alleles " A C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192808.1 samtools variation 687406 687406 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192808.1 samtools variation 694771 694771 . . . alleles " A G"; frequencies " 0.59349593495935 0.40650406504065"; depth 246 ; known ; non-synonymous GL192808.1 samtools variation 704189 704189 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192808.1 samtools variation 922800 922800 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 81 ; known ; N/A GL192808.1 samtools variation 924729 924729 . . . alleles " T C"; frequencies " 0.450704225352113 0.549295774647887"; depth 71 ; known ; N/A GL192808.1 samtools variation 930681 930681 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192808.1 samtools variation 934483 934483 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 34 ; known ; N/A GL192808.1 samtools variation 937086 937086 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192808.1 samtools variation 1013267 1013267 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192808.1 samtools variation 1014285 1014285 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192808.1 samtools variation 1017814 1017814 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192808.1 samtools variation 1019319 1019319 . . . alleles " T G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192808.1 samtools variation 1021915 1021915 . . . alleles " A G"; frequencies " 0.405405405405405 0.594594594594595"; depth 37 ; known ; N/A GL192808.1 samtools variation 1063635 1063635 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; known ; synonymous GL192808.1 samtools variation 1066205 1066205 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192808.1 samtools variation 1080631 1080631 . . . alleles " C T"; frequencies " 0.746192893401015 0.253807106598985"; depth 197 ; unknown ; synonymous GL192808.1 samtools variation 1082892 1082892 . . . alleles " A G"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; synonymous GL192808.1 samtools variation 1082901 1082901 . . . alleles " C A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; synonymous GL192808.1 samtools variation 1085166 1085166 . . . alleles " C T"; frequencies " 0.651515151515151 0.348484848484849"; depth 66 ; known ; non-synonymous GL192808.1 samtools variation 1121427 1121427 . . . alleles " G A"; frequencies " 0.616279069767442 0.383720930232558"; depth 172 ; unknown ; N/A GL192808.1 samtools variation 1139274 1139274 . . . alleles " T C"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; synonymous GL192808.1 samtools variation 1146428 1146428 . . . alleles " T G"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; known ; N/A GL192808.1 samtools variation 1172443 1172443 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 45 ; known ; N/A GL192808.1 samtools variation 1172577 1172577 . . . alleles " G C"; frequencies " 0.485436893203884 0.514563106796116"; depth 309 ; known ; N/A GL192808.1 samtools variation 1173348 1173348 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 48 ; known ; N/A GL192808.1 samtools variation 1188418 1188418 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; synonymous GL192808.1 samtools variation 1325668 1325668 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192808.1 samtools variation 1325764 1325764 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192808.1 samtools variation 1329746 1329746 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; non-synonymous GL192808.1 samtools variation 1330234 1330234 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; synonymous GL192808.1 samtools variation 1346999 1346999 . . . alleles " G A"; frequencies " 0.329987452948557 0.670012547051443"; depth 797 ; unknown ; N/A GL192808.1 samtools variation 1367907 1367907 . . . alleles " A G"; frequencies " 0.681632653061224 0.318367346938775"; depth 245 ; unknown ; synonymous GL192808.1 samtools variation 1370199 1370199 . . . alleles " C T"; frequencies " 0.655913978494624 0.344086021505376"; depth 186 ; unknown ; synonymous GL192808.1 samtools variation 1372627 1372627 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192808.1 samtools variation 1374670 1374670 . . . alleles " C T"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL192809.1 samtools variation 2033 2033 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192809.1 samtools variation 148193 148193 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; synonymous GL192809.1 samtools variation 153846 153846 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 32 ; unknown ; synonymous GL192809.1 samtools variation 157529 157529 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; synonymous GL192809.1 samtools variation 157616 157616 . . . alleles " G A"; frequencies " 0.716981132075472 0.283018867924528"; depth 53 ; unknown ; synonymous GL192809.1 samtools variation 203913 203913 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192809.1 samtools variation 213282 213282 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192809.1 samtools variation 213638 213638 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192809.1 samtools variation 213639 213639 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192809.1 samtools variation 214471 214471 . . . alleles " A C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192809.1 samtools variation 214484 214484 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192809.1 samtools variation 255200 255200 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 36 ; known ; N/A GL192810.1 samtools variation 774393 774393 . . . alleles " A G"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL192810.1 samtools variation 799372 799372 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192810.1 samtools variation 800124 800124 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192810.1 samtools variation 800125 800125 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL192810.1 samtools variation 800924 800924 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192810.1 samtools variation 800928 800928 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192810.1 samtools variation 803016 803016 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 48 ; known ; N/A GL192810.1 samtools variation 803313 803313 . . . alleles " G C"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; unknown ; N/A GL192811.1 samtools variation 138401 138401 . . . alleles " C A"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; N/A GL192811.1 samtools variation 138488 138488 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 44 ; unknown ; N/A GL192811.1 samtools variation 139460 139460 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192811.1 samtools variation 160550 160550 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; synonymous GL192811.1 samtools variation 160595 160595 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; synonymous GL192811.1 samtools variation 265858 265858 . . . alleles " A T"; frequencies " 0.651785714285714 0.348214285714286"; depth 112 ; unknown ; N/A GL192811.1 samtools variation 267270 267270 . . . alleles " A G"; frequencies " 0.616666666666667 0.383333333333333"; depth 60 ; unknown ; synonymous GL192811.1 samtools variation 282781 282781 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192811.1 samtools variation 293713 293713 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192811.1 samtools variation 293760 293760 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192811.1 samtools variation 294933 294933 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192811.1 samtools variation 297040 297040 . . . alleles " A G"; frequencies " 0.612244897959184 0.387755102040816"; depth 147 ; unknown ; synonymous GL192811.1 samtools variation 297070 297070 . . . alleles " T C"; frequencies " 0.681318681318681 0.318681318681319"; depth 91 ; unknown ; synonymous GL192811.1 samtools variation 297109 297109 . . . alleles " A G"; frequencies " 0.745762711864407 0.254237288135593"; depth 59 ; unknown ; non-synonymous GL192811.1 samtools variation 297199 297199 . . . alleles " A G"; frequencies " 0.767123287671233 0.232876712328767"; depth 73 ; unknown ; synonymous GL192811.1 samtools variation 298161 298161 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL192811.1 samtools variation 299009 299009 . . . alleles " A T"; frequencies " 0.752577319587629 0.237113402061856"; depth 97 ; known ; N/A GL192811.1 samtools variation 302581 302581 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192812.1 samtools variation 676196 676196 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192812.1 samtools variation 691089 691089 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192812.1 samtools variation 738852 738852 . . . alleles " T C"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192812.1 samtools variation 748970 748970 . . . alleles " A C"; frequencies " 0.797222222222222 0.202777777777778"; depth 360 ; unknown ; N/A GL192812.1 samtools variation 749542 749542 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192812.1 samtools variation 749701 749701 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192812.1 samtools variation 750498 750498 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 85 ; unknown ; N/A GL192812.1 samtools variation 769628 769628 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192812.1 samtools variation 776343 776343 . . . alleles " G T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192812.1 samtools variation 791002 791002 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192812.1 samtools variation 885223 885223 . . . alleles " C G"; frequencies " 0.531914893617021 0.468085106382979"; depth 47 ; known ; N/A GL192812.1 samtools variation 925610 925610 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192812.1 samtools variation 926755 926755 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; known ; N/A GL192812.1 samtools variation 926772 926772 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL192812.1 samtools variation 928345 928345 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 42 ; known ; N/A GL192812.1 samtools variation 928493 928493 . . . alleles " T C"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; known ; N/A GL192812.1 samtools variation 1109417 1109417 . . . alleles " G C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192812.1 samtools variation 1272880 1272880 . . . alleles " T C"; frequencies " 0.409836065573771 0.590163934426229"; depth 61 ; known ; synonymous GL192812.1 samtools variation 1273945 1273945 . . . alleles " A G"; frequencies " 0.44 0.56"; depth 25 ; known ; N/A GL192812.1 samtools variation 1274217 1274217 . . . alleles " C G"; frequencies " 0.383333333333333 0.616666666666667"; depth 60 ; known ; N/A GL192812.1 samtools variation 1274247 1274247 . . . alleles " G A"; frequencies " 0.795918367346939 0.204081632653061"; depth 49 ; unknown ; N/A GL192812.1 samtools variation 1274308 1274308 . . . alleles " A G"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; N/A GL192812.1 samtools variation 1274442 1274442 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192812.1 samtools variation 1283408 1283408 . . . alleles " A C"; frequencies " 0.764044943820225 0.235955056179775"; depth 89 ; known ; N/A GL192812.1 samtools variation 1283800 1283800 . . . alleles " G A"; frequencies " 0.71875 0.28125"; depth 64 ; known ; synonymous GL192812.1 samtools variation 1287010 1287010 . . . alleles " G A"; frequencies " 0.274509803921569 0.725490196078431"; depth 51 ; known ; non-synonymous GL192812.1 samtools variation 1292786 1292786 . . . alleles " G A"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL192812.1 samtools variation 1293547 1293547 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192812.1 samtools variation 1294218 1294218 . . . alleles " T C"; frequencies " 0.66304347826087 0.33695652173913"; depth 92 ; known ; synonymous GL192813.1 samtools variation 616729 616729 . . . alleles " C A"; frequencies " 0.756944444444444 0.243055555555556"; depth 144 ; known ; synonymous GL192813.1 samtools variation 643554 643554 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192813.1 samtools variation 643607 643607 . . . alleles " C G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192813.1 samtools variation 652109 652109 . . . alleles " A C"; frequencies " 0.728888888888889 0.271111111111111"; depth 225 ; known ; synonymous GL192813.1 samtools variation 652115 652115 . . . alleles " C T"; frequencies " 0.763888888888889 0.236111111111111"; depth 216 ; unknown ; synonymous GL192813.1 samtools variation 655490 655490 . . . alleles " C T"; frequencies " 0.741176470588235 0.258823529411765"; depth 425 ; known ; synonymous GL192813.1 samtools variation 660304 660304 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192813.1 samtools variation 662345 662345 . . . alleles " G T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192813.1 samtools variation 662952 662952 . . . alleles " T C"; frequencies " 0.525280898876405 0.474719101123595"; depth 356 ; known ; synonymous GL192813.1 samtools variation 663971 663971 . . . alleles " T G"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192813.1 samtools variation 664203 664203 . . . alleles " T C"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192813.1 samtools variation 664311 664311 . . . alleles " C T"; frequencies " 0.675 0.325"; depth 40 ; unknown ; N/A GL192813.1 samtools variation 664391 664391 . . . alleles " C T"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL192813.1 samtools variation 664394 664394 . . . alleles " G A"; frequencies " 0.651162790697674 0.348837209302326"; depth 43 ; unknown ; N/A GL192813.1 samtools variation 664555 664555 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL192813.1 samtools variation 665049 665049 . . . alleles " G A"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; N/A GL192813.1 samtools variation 665126 665126 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192813.1 samtools variation 665880 665880 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 30 ; known ; N/A GL192813.1 samtools variation 666860 666860 . . . alleles " G T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192813.1 samtools variation 666922 666922 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192813.1 samtools variation 667316 667316 . . . alleles " A C"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; unknown ; N/A GL192813.1 samtools variation 667317 667317 . . . alleles " G A"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; unknown ; N/A GL192813.1 samtools variation 668122 668122 . . . alleles " C T"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; known ; N/A GL192813.1 samtools variation 688655 688655 . . . alleles " T A"; frequencies " 0.44 0.56"; depth 25 ; known ; non-synonymous GL192813.1 samtools variation 699562 699562 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 44 ; known ; synonymous GL192813.1 samtools variation 700688 700688 . . . alleles " G T"; frequencies " 0.44 0.56"; depth 25 ; known ; non-synonymous GL192813.1 samtools variation 1201385 1201385 . . . alleles " C G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL192813.1 samtools variation 1202802 1202802 . . . alleles " A C"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; known ; N/A GL192813.1 samtools variation 1203242 1203242 . . . alleles " C G"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; known ; N/A GL192813.1 samtools variation 1203253 1203253 . . . alleles " A G"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; known ; N/A GL192813.1 samtools variation 1205622 1205622 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192813.1 samtools variation 1209572 1209572 . . . alleles " T C"; frequencies " 0.552238805970149 0.447761194029851"; depth 67 ; unknown ; N/A GL192813.1 samtools variation 1209747 1209747 . . . alleles " T C"; frequencies " 0.215827338129496 0.784172661870504"; depth 139 ; known ; N/A GL192813.1 samtools variation 1212866 1212866 . . . alleles " G A"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; N/A GL192813.1 samtools variation 1212958 1212958 . . . alleles " T C"; frequencies " 0.373493975903614 0.626506024096386"; depth 83 ; unknown ; N/A GL192813.1 samtools variation 1214769 1214769 . . . alleles " G A"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; N/A GL192813.1 samtools variation 1214786 1214786 . . . alleles " G T"; frequencies " 0.305555555555556 0.694444444444444"; depth 36 ; known ; N/A GL192815.1 samtools variation 207999 207999 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192815.1 samtools variation 208064 208064 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192815.1 samtools variation 208666 208666 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; synonymous GL192815.1 samtools variation 209145 209145 . . . alleles " G A"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; unknown ; N/A GL192815.1 samtools variation 209710 209710 . . . alleles " C T"; frequencies " 0.60655737704918 0.39344262295082"; depth 61 ; known ; N/A GL192815.1 samtools variation 209910 209910 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192815.1 samtools variation 210174 210174 . . . alleles " G A"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; N/A GL192815.1 samtools variation 211688 211688 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192815.1 samtools variation 212399 212399 . . . alleles " C T"; frequencies " 0.489224137931034 0.510775862068966"; depth 464 ; known ; N/A GL192815.1 samtools variation 212499 212499 . . . alleles " G A"; frequencies " 0.497536945812808 0.502463054187192"; depth 609 ; known ; N/A GL192815.1 samtools variation 212532 212532 . . . alleles " G A"; frequencies " 0.523396880415945 0.476603119584055"; depth 577 ; known ; N/A GL192815.1 samtools variation 213315 213315 . . . alleles " C T"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; N/A GL192815.1 samtools variation 213402 213402 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 40 ; known ; N/A GL192815.1 samtools variation 213692 213692 . . . alleles " G A"; frequencies " 0.656019656019656 0.343980343980344"; depth 407 ; known ; synonymous GL192815.1 samtools variation 216024 216024 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL192815.1 samtools variation 216073 216073 . . . alleles " G A"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL192815.1 samtools variation 233063 233063 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; non-synonymous GL192815.1 samtools variation 241532 241532 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192815.1 samtools variation 246700 246700 . . . alleles " G A"; frequencies " 0.535632183908046 0.464367816091954"; depth 435 ; unknown ; synonymous GL192815.1 samtools variation 247499 247499 . . . alleles " C T"; frequencies " 0.54296875 0.45703125"; depth 256 ; unknown ; synonymous GL192815.1 samtools variation 251578 251578 . . . alleles " G C"; frequencies " 0.655502392344498 0.344497607655502"; depth 209 ; unknown ; N/A GL192815.1 samtools variation 251606 251606 . . . alleles " A C"; frequencies " 0.626262626262626 0.373737373737374"; depth 99 ; unknown ; N/A GL192815.1 samtools variation 257982 257982 . . . alleles " A C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192815.1 samtools variation 259058 259058 . . . alleles " T C"; frequencies " 0.673758865248227 0.326241134751773"; depth 141 ; unknown ; N/A GL192815.1 samtools variation 263475 263475 . . . alleles " A G"; frequencies " 0.579439252336449 0.420560747663551"; depth 107 ; known ; non-synonymous GL192815.1 samtools variation 282816 282816 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192815.1 samtools variation 288265 288265 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192815.1 samtools variation 290941 290941 . . . alleles " G T"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL192815.1 samtools variation 296707 296707 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; unknown ; N/A GL192815.1 samtools variation 297259 297259 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192815.1 samtools variation 297841 297841 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192815.1 samtools variation 324844 324844 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192815.1 samtools variation 324915 324915 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192815.1 samtools variation 324952 324952 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192815.1 samtools variation 325020 325020 . . . alleles " T G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192815.1 samtools variation 327816 327816 . . . alleles " A G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192815.1 samtools variation 327899 327899 . . . alleles " A T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL192815.1 samtools variation 328173 328173 . . . alleles " T G"; frequencies " 0.35 0.65"; depth 80 ; known ; N/A GL192815.1 samtools variation 328906 328906 . . . alleles " G A"; frequencies " 0.679245283018868 0.320754716981132"; depth 53 ; known ; N/A GL192815.1 samtools variation 329107 329107 . . . alleles " A G"; frequencies " 0.707070707070707 0.292929292929293"; depth 99 ; known ; N/A GL192815.1 samtools variation 329284 329284 . . . alleles " G A"; frequencies " 0.340425531914894 0.659574468085106"; depth 47 ; known ; N/A GL192816.1 samtools variation 1153413 1153413 . . . alleles " A T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192816.1 samtools variation 1231539 1231539 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 51 ; unknown ; N/A GL192816.1 samtools variation 1233762 1233762 . . . alleles " C T"; frequencies " 0.27027027027027 0.72972972972973"; depth 37 ; unknown ; N/A GL192816.1 samtools variation 1265768 1265768 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 105 ; unknown ; synonymous GL192816.1 samtools variation 1265802 1265802 . . . alleles " C T"; frequencies " 0.729411764705882 0.270588235294118"; depth 85 ; unknown ; N/A GL192817.1 samtools variation 396864 396864 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192817.1 samtools variation 397355 397355 . . . alleles " A G"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; N/A GL192817.1 samtools variation 399503 399503 . . . alleles " A G"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192817.1 samtools variation 437770 437770 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192817.1 samtools variation 439519 439519 . . . alleles " T C"; frequencies " 0.564102564102564 0.435897435897436"; depth 78 ; known ; N/A GL192817.1 samtools variation 482984 482984 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192817.1 samtools variation 483083 483083 . . . alleles " T C"; frequencies " 0.401408450704225 0.598591549295775"; depth 142 ; unknown ; N/A GL192817.1 samtools variation 483129 483129 . . . alleles " G A"; frequencies " 0.335164835164835 0.664835164835165"; depth 182 ; unknown ; N/A GL192817.1 samtools variation 483675 483675 . . . alleles " C G"; frequencies " 0.5125 0.483333333333333"; depth 240 ; unknown ; N/A GL192817.1 samtools variation 484681 484681 . . . alleles " T C"; frequencies " 0.538288288288288 0.460585585585586"; depth 888 ; known ; N/A GL192817.1 samtools variation 484949 484949 . . . alleles " C T"; frequencies " 0.637007874015748 0.362992125984252"; depth 1270 ; unknown ; N/A GL192817.1 samtools variation 484961 484961 . . . alleles " C T"; frequencies " 0.675611681136543 0.324388318863457"; depth 1267 ; known ; N/A GL192817.1 samtools variation 485247 485247 . . . alleles " T C"; frequencies " 0.39453125 0.60546875"; depth 1024 ; known ; N/A GL192817.1 samtools variation 486026 486026 . . . alleles " C G"; frequencies " 0.730979612133267 0.269020387866733"; depth 2011 ; known ; non-synonymous GL192817.1 samtools variation 486439 486439 . . . alleles " G A"; frequencies " 0.528089887640449 0.471910112359551"; depth 534 ; unknown ; non-synonymous GL192817.1 samtools variation 490136 490136 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 69 ; known ; N/A GL192817.1 samtools variation 490351 490351 . . . alleles " C A"; frequencies " 0.21505376344086 0.78494623655914"; depth 93 ; known ; N/A GL192817.1 samtools variation 490458 490458 . . . alleles " T C"; frequencies " 0.696428571428571 0.303571428571429"; depth 56 ; known ; N/A GL192817.1 samtools variation 492430 492430 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL192817.1 samtools variation 492452 492452 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 35 ; known ; N/A GL192817.1 samtools variation 493182 493182 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192817.1 samtools variation 493238 493238 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192817.1 samtools variation 493653 493653 . . . alleles " T C"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL192817.1 samtools variation 611310 611310 . . . alleles " C G"; frequencies " 0.470588235294118 0.529411764705882"; depth 34 ; known ; N/A GL192817.1 samtools variation 611400 611400 . . . alleles " G A"; frequencies " 0.208955223880597 0.791044776119403"; depth 201 ; known ; N/A GL192817.1 samtools variation 611467 611467 . . . alleles " T C"; frequencies " 0.206349206349206 0.793650793650794"; depth 189 ; known ; N/A GL192817.1 samtools variation 612319 612319 . . . alleles " G A"; frequencies " 0.762295081967213 0.237704918032787"; depth 122 ; known ; N/A GL192817.1 samtools variation 613830 613830 . . . alleles " C T"; frequencies " 0.219178082191781 0.780821917808219"; depth 73 ; known ; N/A GL192817.1 samtools variation 615211 615211 . . . alleles " C A"; frequencies " 0.227586206896552 0.76551724137931"; depth 145 ; known ; non-synonymous GL192817.1 samtools variation 637136 637136 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192817.1 samtools variation 808067 808067 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; non-synonymous GL192817.1 samtools variation 1081045 1081045 . . . alleles " A G"; frequencies " 0.603053435114504 0.396946564885496"; depth 393 ; unknown ; N/A GL192817.1 samtools variation 1081063 1081063 . . . alleles " A T"; frequencies " 0.639204545454545 0.360795454545455"; depth 352 ; unknown ; N/A GL192817.1 samtools variation 1081450 1081450 . . . alleles " A T"; frequencies " 0.730769230769231 0.269230769230769"; depth 78 ; unknown ; N/A GL192817.1 samtools variation 1082655 1082655 . . . alleles " C A"; frequencies " 0.27972027972028 0.72027972027972"; depth 143 ; unknown ; N/A GL192817.1 samtools variation 1115073 1115073 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192817.1 samtools variation 1130250 1130250 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192817.1 samtools variation 1157332 1157332 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192817.1 samtools variation 1158028 1158028 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 77 ; known ; N/A GL192817.1 samtools variation 1158996 1158996 . . . alleles " A G"; frequencies " 0.757575757575758 0.242424242424242"; depth 66 ; unknown ; N/A GL192817.1 samtools variation 1172811 1172811 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192817.1 samtools variation 1198095 1198095 . . . alleles " C A"; frequencies " 0.541666666666667 0.416666666666667"; depth 24 ; unknown ; synonymous GL192818.1 samtools variation 63698 63698 . . . alleles " C T"; frequencies " 0.205128205128205 0.794871794871795"; depth 117 ; known ; synonymous GL192818.1 samtools variation 69593 69593 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL192818.1 samtools variation 71541 71541 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192818.1 samtools variation 74250 74250 . . . alleles " G A"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL192818.1 samtools variation 74349 74349 . . . alleles " C G"; frequencies " 0.711538461538462 0.288461538461538"; depth 52 ; unknown ; N/A GL192818.1 samtools variation 74882 74882 . . . alleles " C T"; frequencies " 0.698275862068966 0.301724137931034"; depth 116 ; unknown ; N/A GL192818.1 samtools variation 76636 76636 . . . alleles " G A"; frequencies " 0.697674418604651 0.302325581395349"; depth 43 ; unknown ; N/A GL192818.1 samtools variation 77468 77468 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 66 ; unknown ; N/A GL192818.1 samtools variation 79229 79229 . . . alleles " C T"; frequencies " 0.592233009708738 0.407766990291262"; depth 103 ; unknown ; N/A GL192818.1 samtools variation 81776 81776 . . . alleles " A C"; frequencies " 0.590163934426229 0.409836065573771"; depth 61 ; unknown ; N/A GL192818.1 samtools variation 355402 355402 . . . alleles " T C"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; known ; N/A GL192818.1 samtools variation 363666 363666 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192818.1 samtools variation 436746 436746 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192818.1 samtools variation 459544 459544 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192818.1 samtools variation 650424 650424 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; synonymous GL192818.1 samtools variation 820526 820526 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; known ; N/A GL192818.1 samtools variation 853093 853093 . . . alleles " C A"; frequencies " 0.5625 0.4375"; depth 32 ; known ; N/A GL192818.1 samtools variation 856141 856141 . . . alleles " A C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192818.1 samtools variation 887732 887732 . . . alleles " A G"; frequencies " 0.34375 0.65625"; depth 32 ; known ; N/A GL192818.1 samtools variation 892197 892197 . . . alleles " C T"; frequencies " 0.510869565217391 0.489130434782609"; depth 184 ; known ; N/A GL192818.1 samtools variation 893044 893044 . . . alleles " T C"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; known ; N/A GL192818.1 samtools variation 893254 893254 . . . alleles " C T"; frequencies " 0.557692307692308 0.442307692307692"; depth 52 ; known ; N/A GL192818.1 samtools variation 893595 893595 . . . alleles " C T"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; known ; N/A GL192818.1 samtools variation 893681 893681 . . . alleles " T C"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; known ; N/A GL192818.1 samtools variation 894104 894104 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL192818.1 samtools variation 896538 896538 . . . alleles " T C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; N/A GL192818.1 samtools variation 896795 896795 . . . alleles " A G"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; known ; N/A GL192818.1 samtools variation 898944 898944 . . . alleles " G A"; frequencies " 0.612612612612613 0.387387387387387"; depth 111 ; unknown ; N/A GL192818.1 samtools variation 899420 899420 . . . alleles " T C"; frequencies " 0.58 0.42"; depth 100 ; known ; N/A GL192818.1 samtools variation 912391 912391 . . . alleles " A G"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; known ; synonymous GL192818.1 samtools variation 965328 965328 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192818.1 samtools variation 1067434 1067434 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; synonymous GL192818.1 samtools variation 1310614 1310614 . . . alleles " G C"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192819.1 samtools variation 47022 47022 . . . alleles " T G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; synonymous GL192819.1 samtools variation 136012 136012 . . . alleles " G A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192819.1 samtools variation 136626 136626 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192819.1 samtools variation 136686 136686 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192819.1 samtools variation 575647 575647 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192819.1 samtools variation 580096 580096 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192819.1 samtools variation 589782 589782 . . . alleles " G A"; frequencies " 0.392857142857143 0.607142857142857"; depth 140 ; unknown ; N/A GL192819.1 samtools variation 600511 600511 . . . alleles " A G"; frequencies " 0.687344913151365 0.312655086848635"; depth 403 ; unknown ; N/A GL192819.1 samtools variation 625088 625088 . . . alleles " T A"; frequencies " 0.461538461538462 0.538461538461538"; depth 65 ; known ; N/A GL192819.1 samtools variation 630601 630601 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192819.1 samtools variation 643090 643090 . . . alleles " G A"; frequencies " 0.757009345794392 0.242990654205607"; depth 107 ; unknown ; synonymous GL192819.1 samtools variation 643520 643520 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192819.1 samtools variation 648357 648357 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; non-synonymous GL192819.1 samtools variation 648432 648432 . . . alleles " C G"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; known ; synonymous GL192819.1 samtools variation 648444 648444 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 48 ; unknown ; synonymous GL192819.1 samtools variation 649386 649386 . . . alleles " C T"; frequencies " 0.40625 0.59375"; depth 32 ; known ; N/A GL192819.1 samtools variation 649832 649832 . . . alleles " G C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL192819.1 samtools variation 650873 650873 . . . alleles " G A"; frequencies " 0.446428571428571 0.553571428571429"; depth 56 ; unknown ; non-synonymous GL192819.1 samtools variation 650880 650880 . . . alleles " T C"; frequencies " 0.456140350877193 0.543859649122807"; depth 57 ; unknown ; non-synonymous GL192819.1 samtools variation 652501 652501 . . . alleles " C A"; frequencies " 0.556122448979592 0.443877551020408"; depth 196 ; unknown ; N/A GL192819.1 samtools variation 688014 688014 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192819.1 samtools variation 722501 722501 . . . alleles " A C"; frequencies " 0.608974358974359 0.391025641025641"; depth 156 ; unknown ; N/A GL192819.1 samtools variation 730871 730871 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192819.1 samtools variation 732190 732190 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL192819.1 samtools variation 736567 736567 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 48 ; unknown ; N/A GL192819.1 samtools variation 736642 736642 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192819.1 samtools variation 738758 738758 . . . alleles " G T"; frequencies " 0.315789473684211 0.684210526315789"; depth 38 ; unknown ; synonymous GL192819.1 samtools variation 738877 738877 . . . alleles " T G"; frequencies " 0.394736842105263 0.605263157894737"; depth 38 ; unknown ; N/A GL192819.1 samtools variation 738880 738880 . . . alleles " A G"; frequencies " 0.394736842105263 0.605263157894737"; depth 38 ; unknown ; N/A GL192819.1 samtools variation 739712 739712 . . . alleles " A G"; frequencies " 0.344339622641509 0.655660377358491"; depth 212 ; unknown ; synonymous GL192819.1 samtools variation 740413 740413 . . . alleles " G A"; frequencies " 0.508196721311475 0.491803278688525"; depth 61 ; unknown ; N/A GL192819.1 samtools variation 740659 740659 . . . alleles " G A"; frequencies " 0.448275862068966 0.551724137931034"; depth 58 ; unknown ; N/A GL192819.1 samtools variation 740720 740720 . . . alleles " T C"; frequencies " 0.42156862745098 0.57843137254902"; depth 102 ; unknown ; N/A GL192819.1 samtools variation 740947 740947 . . . alleles " C T"; frequencies " 0.625806451612903 0.374193548387097"; depth 155 ; unknown ; N/A GL192819.1 samtools variation 742677 742677 . . . alleles " G C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192819.1 samtools variation 742922 742922 . . . alleles " G C"; frequencies " 0.372340425531915 0.627659574468085"; depth 282 ; unknown ; non-synonymous GL192819.1 samtools variation 743114 743114 . . . alleles " T C"; frequencies " 0.366013071895425 0.633986928104575"; depth 306 ; unknown ; synonymous GL192819.1 samtools variation 743403 743403 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; unknown ; N/A GL192819.1 samtools variation 744152 744152 . . . alleles " G A"; frequencies " 0.775193798449612 0.224806201550388"; depth 129 ; unknown ; N/A GL192819.1 samtools variation 744719 744719 . . . alleles " T C"; frequencies " 0.373165618448637 0.626834381551363"; depth 954 ; unknown ; synonymous GL192819.1 samtools variation 744883 744883 . . . alleles " C T"; frequencies " 0.349290780141844 0.649822695035461"; depth 1128 ; unknown ; non-synonymous GL192819.1 samtools variation 745221 745221 . . . alleles " T C"; frequencies " 0.209756097560976 0.790243902439024"; depth 205 ; unknown ; synonymous GL192819.1 samtools variation 746908 746908 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192819.1 samtools variation 747695 747695 . . . alleles " G A"; frequencies " 0.420212765957447 0.579787234042553"; depth 376 ; unknown ; synonymous GL192819.1 samtools variation 748590 748590 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192819.1 samtools variation 749050 749050 . . . alleles " T C"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192819.1 samtools variation 749055 749055 . . . alleles " T C"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192819.1 samtools variation 761883 761883 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192819.1 samtools variation 768981 768981 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192819.1 samtools variation 769100 769100 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192819.1 samtools variation 770174 770174 . . . alleles " C T"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL192819.1 samtools variation 770307 770307 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192819.1 samtools variation 785884 785884 . . . alleles " A G"; frequencies " 0.549738219895288 0.450261780104712"; depth 573 ; unknown ; non-synonymous GL192819.1 samtools variation 785928 785928 . . . alleles " T C"; frequencies " 0.508108108108108 0.491891891891892"; depth 555 ; unknown ; synonymous GL192819.1 samtools variation 786322 786322 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192819.1 samtools variation 786331 786331 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192819.1 samtools variation 786424 786424 . . . alleles " C T"; frequencies " 0.651685393258427 0.348314606741573"; depth 356 ; unknown ; non-synonymous GL192819.1 samtools variation 786458 786458 . . . alleles " G A"; frequencies " 0.613013698630137 0.386986301369863"; depth 292 ; unknown ; synonymous GL192819.1 samtools variation 786485 786485 . . . alleles " G A"; frequencies " 0.638795986622074 0.361204013377926"; depth 299 ; unknown ; synonymous GL192819.1 samtools variation 788467 788467 . . . alleles " G A"; frequencies " 0.693726937269373 0.306273062730627"; depth 271 ; unknown ; non-synonymous GL192819.1 samtools variation 789220 789220 . . . alleles " G A"; frequencies " 0.79047619047619 0.20952380952381"; depth 210 ; unknown ; synonymous GL192819.1 samtools variation 789603 789603 . . . alleles " C A"; frequencies " 0.254335260115607 0.745664739884393"; depth 173 ; unknown ; synonymous GL192819.1 samtools variation 790117 790117 . . . alleles " T A"; frequencies " 0.299363057324841 0.700636942675159"; depth 157 ; unknown ; non-synonymous GL192819.1 samtools variation 821722 821722 . . . alleles " C T"; frequencies " 0.763265306122449 0.236734693877551"; depth 735 ; unknown ; synonymous GL192819.1 samtools variation 824766 824766 . . . alleles " A G"; frequencies " 0.746031746031746 0.253968253968254"; depth 63 ; unknown ; N/A GL192819.1 samtools variation 862893 862893 . . . alleles " A G"; frequencies " 0.341288782816229 0.658711217183771"; depth 419 ; unknown ; synonymous GL192819.1 samtools variation 863370 863370 . . . alleles " T A"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; known ; N/A GL192819.1 samtools variation 863968 863968 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192819.1 samtools variation 881552 881552 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192819.1 samtools variation 881724 881724 . . . alleles " C A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192819.1 samtools variation 881826 881826 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192819.1 samtools variation 881829 881829 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192819.1 samtools variation 882105 882105 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 88 ; known ; synonymous GL192819.1 samtools variation 882739 882739 . . . alleles " C T"; frequencies " 0.256578947368421 0.743421052631579"; depth 152 ; known ; synonymous GL192819.1 samtools variation 890582 890582 . . . alleles " C A"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192819.1 samtools variation 890771 890771 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; non-synonymous GL192819.1 samtools variation 914898 914898 . . . alleles " C T"; frequencies " 0.228187919463087 0.771812080536913"; depth 149 ; unknown ; synonymous GL192819.1 samtools variation 934408 934408 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; unknown ; synonymous GL192819.1 samtools variation 935625 935625 . . . alleles " T C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192819.1 samtools variation 935995 935995 . . . alleles " C T"; frequencies " 0.717948717948718 0.282051282051282"; depth 78 ; unknown ; N/A GL192819.1 samtools variation 936491 936491 . . . alleles " T G"; frequencies " 0.574468085106383 0.425531914893617"; depth 47 ; unknown ; N/A GL192819.1 samtools variation 936538 936538 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192819.1 samtools variation 936678 936678 . . . alleles " C T"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; non-synonymous GL192819.1 samtools variation 937090 937090 . . . alleles " C G"; frequencies " 0.634920634920635 0.365079365079365"; depth 252 ; unknown ; synonymous GL192819.1 samtools variation 937222 937222 . . . alleles " T C"; frequencies " 0.609195402298851 0.390804597701149"; depth 174 ; unknown ; synonymous GL192819.1 samtools variation 937788 937788 . . . alleles " C G"; frequencies " 0.747292418772563 0.252707581227437"; depth 277 ; unknown ; synonymous GL192819.1 samtools variation 938407 938407 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 50 ; known ; N/A GL192819.1 samtools variation 940225 940225 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 72 ; unknown ; N/A GL192819.1 samtools variation 947806 947806 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192819.1 samtools variation 947863 947863 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192819.1 samtools variation 951401 951401 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192819.1 samtools variation 957885 957885 . . . alleles " T G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192819.1 samtools variation 958654 958654 . . . alleles " G C"; frequencies " 0.735849056603774 0.264150943396226"; depth 53 ; unknown ; non-synonymous GL192819.1 samtools variation 958682 958682 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 81 ; unknown ; synonymous GL192819.1 samtools variation 961713 961713 . . . alleles " C G"; frequencies " 0.301587301587302 0.698412698412698"; depth 63 ; unknown ; non-synonymous GL192819.1 samtools variation 969631 969631 . . . alleles " A G"; frequencies " 0.670542635658915 0.329457364341085"; depth 258 ; known ; synonymous GL192819.1 samtools variation 970428 970428 . . . alleles " A G"; frequencies " 0.685314685314685 0.307692307692308"; depth 143 ; known ; synonymous GL192819.1 samtools variation 970443 970443 . . . alleles " G A"; frequencies " 0.75609756097561 0.24390243902439"; depth 123 ; unknown ; synonymous GL192819.1 samtools variation 971569 971569 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192819.1 samtools variation 971604 971604 . . . alleles " C T"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; known ; N/A GL192819.1 samtools variation 971851 971851 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192819.1 samtools variation 971855 971855 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192819.1 samtools variation 972615 972615 . . . alleles " T C"; frequencies " 0.518796992481203 0.481203007518797"; depth 266 ; known ; synonymous GL192819.1 samtools variation 981844 981844 . . . alleles " G T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL192819.1 samtools variation 981902 981902 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL192819.1 samtools variation 987857 987857 . . . alleles " C G"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192819.1 samtools variation 995999 995999 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL192819.1 samtools variation 1068839 1068839 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL192819.1 samtools variation 1069134 1069134 . . . alleles " A G"; frequencies " 0.205405405405405 0.794594594594595"; depth 185 ; unknown ; N/A GL192819.1 samtools variation 1071491 1071491 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 66 ; unknown ; non-synonymous GL192819.1 samtools variation 1072489 1072489 . . . alleles " T C"; frequencies " 0.287671232876712 0.712328767123288"; depth 73 ; unknown ; synonymous GL192819.1 samtools variation 1106359 1106359 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192819.1 samtools variation 1115230 1115230 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL192819.1 samtools variation 1166583 1166583 . . . alleles " C T"; frequencies " 0.763440860215054 0.236559139784946"; depth 93 ; unknown ; synonymous GL192819.1 samtools variation 1234112 1234112 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; synonymous GL192819.1 samtools variation 1240441 1240441 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; synonymous GL192819.1 samtools variation 1281626 1281626 . . . alleles " G A"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; known ; synonymous GL192819.1 samtools variation 1346169 1346169 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192821.1 samtools variation 150222 150222 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192821.1 samtools variation 151252 151252 . . . alleles " C A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192821.1 samtools variation 164747 164747 . . . alleles " G A"; frequencies " 0.592 0.408"; depth 125 ; unknown ; non-synonymous GL192821.1 samtools variation 164901 164901 . . . alleles " C G"; frequencies " 0.436363636363636 0.563636363636364"; depth 55 ; known ; N/A GL192821.1 samtools variation 166359 166359 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 168 ; known ; N/A GL192821.1 samtools variation 166400 166400 . . . alleles " A G"; frequencies " 0.369565217391304 0.630434782608696"; depth 92 ; known ; N/A GL192821.1 samtools variation 166913 166913 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192821.1 samtools variation 197968 197968 . . . alleles " T G"; frequencies " 0.47887323943662 0.52112676056338"; depth 71 ; known ; N/A GL192821.1 samtools variation 198634 198634 . . . alleles " T C"; frequencies " 0.32 0.68"; depth 25 ; known ; N/A GL192821.1 samtools variation 204221 204221 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192821.1 samtools variation 210420 210420 . . . alleles " A G"; frequencies " 0.44 0.56"; depth 25 ; known ; N/A GL192821.1 samtools variation 210544 210544 . . . alleles " A C"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; known ; N/A GL192821.1 samtools variation 210569 210569 . . . alleles " T C"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; known ; N/A GL192821.1 samtools variation 215758 215758 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL192821.1 samtools variation 216804 216804 . . . alleles " A G"; frequencies " 0.48993288590604 0.51006711409396"; depth 149 ; known ; synonymous GL192821.1 samtools variation 218459 218459 . . . alleles " T G"; frequencies " 0.511363636363636 0.488636363636364"; depth 88 ; unknown ; N/A GL192821.1 samtools variation 218566 218566 . . . alleles " C T"; frequencies " 0.586206896551724 0.413793103448276"; depth 145 ; known ; N/A GL192821.1 samtools variation 218764 218764 . . . alleles " C T"; frequencies " 0.543147208121827 0.456852791878173"; depth 197 ; unknown ; N/A GL192821.1 samtools variation 218765 218765 . . . alleles " A G"; frequencies " 0.542713567839196 0.457286432160804"; depth 199 ; unknown ; N/A GL192821.1 samtools variation 219018 219018 . . . alleles " A G"; frequencies " 0.458333333333333 0.541666666666667"; depth 264 ; known ; N/A GL192821.1 samtools variation 219748 219748 . . . alleles " T C"; frequencies " 0.26984126984127 0.73015873015873"; depth 63 ; known ; N/A GL192821.1 samtools variation 220202 220202 . . . alleles " C T"; frequencies " 0.495412844036697 0.504587155963303"; depth 109 ; known ; N/A GL192821.1 samtools variation 220389 220389 . . . alleles " G A"; frequencies " 0.658536585365854 0.341463414634146"; depth 82 ; known ; N/A GL192821.1 samtools variation 220628 220628 . . . alleles " A G"; frequencies " 0.516949152542373 0.483050847457627"; depth 236 ; known ; N/A GL192821.1 samtools variation 220813 220813 . . . alleles " A G"; frequencies " 0.43859649122807 0.56140350877193"; depth 57 ; known ; N/A GL192821.1 samtools variation 220944 220944 . . . alleles " A G"; frequencies " 0.527950310559006 0.472049689440994"; depth 161 ; known ; N/A GL192821.1 samtools variation 221982 221982 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL192821.1 samtools variation 222036 222036 . . . alleles " G A"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; unknown ; N/A GL192821.1 samtools variation 222153 222153 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 57 ; known ; N/A GL192821.1 samtools variation 223913 223913 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192821.1 samtools variation 224313 224313 . . . alleles " T A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192821.1 samtools variation 227658 227658 . . . alleles " T A"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; N/A GL192821.1 samtools variation 227802 227802 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 55 ; known ; N/A GL192821.1 samtools variation 227911 227911 . . . alleles " G A"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; known ; N/A GL192821.1 samtools variation 228458 228458 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL192821.1 samtools variation 232912 232912 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192821.1 samtools variation 241224 241224 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL192821.1 samtools variation 242109 242109 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192821.1 samtools variation 506166 506166 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192821.1 samtools variation 506323 506323 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192822.1 samtools variation 678524 678524 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192822.1 samtools variation 744029 744029 . . . alleles " A G"; frequencies " 0.483333333333333 0.516666666666667"; depth 60 ; unknown ; N/A GL192822.1 samtools variation 775251 775251 . . . alleles " C T"; frequencies " 0.369565217391304 0.630434782608696"; depth 46 ; known ; synonymous GL192822.1 samtools variation 819434 819434 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192822.1 samtools variation 833364 833364 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192822.1 samtools variation 980138 980138 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192822.1 samtools variation 1012451 1012451 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192822.1 samtools variation 1257958 1257958 . . . alleles " C A"; frequencies " 0.73015873015873 0.26984126984127"; depth 63 ; unknown ; N/A GL192822.1 samtools variation 1258208 1258208 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 52 ; unknown ; N/A GL192822.1 samtools variation 1259917 1259917 . . . alleles " G A"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL192822.1 samtools variation 1261422 1261422 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 66 ; unknown ; N/A GL192822.1 samtools variation 1278712 1278712 . . . alleles " A T"; frequencies " 0.586206896551724 0.413793103448276"; depth 58 ; unknown ; N/A GL192822.1 samtools variation 1279544 1279544 . . . alleles " C T"; frequencies " 0.74 0.26"; depth 50 ; unknown ; N/A GL192822.1 samtools variation 1280251 1280251 . . . alleles " G C"; frequencies " 0.478260869565217 0.521739130434783"; depth 46 ; unknown ; N/A GL192822.1 samtools variation 1281030 1281030 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192823.1 samtools variation 189285 189285 . . . alleles " A C"; frequencies " 0.694117647058824 0.305882352941176"; depth 85 ; known ; non-synonymous GL192823.1 samtools variation 193273 193273 . . . alleles " C T"; frequencies " 0.513513513513513 0.486486486486487"; depth 37 ; known ; synonymous GL192823.1 samtools variation 193522 193522 . . . alleles " G A"; frequencies " 0.28 0.72"; depth 25 ; known ; synonymous GL192823.1 samtools variation 232234 232234 . . . alleles " T A"; frequencies " 0.79746835443038 0.20253164556962"; depth 79 ; unknown ; N/A GL192823.1 samtools variation 255339 255339 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192823.1 samtools variation 259033 259033 . . . alleles " T G"; frequencies " 0.790322580645161 0.209677419354839"; depth 62 ; known ; N/A GL192823.1 samtools variation 286342 286342 . . . alleles " G C"; frequencies " 0.693548387096774 0.306451612903226"; depth 62 ; unknown ; N/A GL192823.1 samtools variation 286423 286423 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 40 ; unknown ; N/A GL192823.1 samtools variation 288886 288886 . . . alleles " A G"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL192823.1 samtools variation 289082 289082 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192823.1 samtools variation 289085 289085 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL192823.1 samtools variation 289242 289242 . . . alleles " C G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192823.1 samtools variation 294784 294784 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192823.1 samtools variation 390617 390617 . . . alleles " C T"; frequencies " 0.260869565217391 0.739130434782609"; depth 92 ; unknown ; synonymous GL192823.1 samtools variation 429153 429153 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192823.1 samtools variation 435646 435646 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192823.1 samtools variation 435661 435661 . . . alleles " A C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192823.1 samtools variation 778324 778324 . . . alleles " A G"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; known ; N/A GL192823.1 samtools variation 779976 779976 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; known ; N/A GL192823.1 samtools variation 780015 780015 . . . alleles " T C"; frequencies " 0.208333333333333 0.791666666666667"; depth 48 ; known ; N/A GL192824.1 samtools variation 34793 34793 . . . alleles " C A"; frequencies " 0.553370786516854 0.432584269662921"; depth 356 ; known ; synonymous GL192824.1 samtools variation 35954 35954 . . . alleles " A G"; frequencies " 0.436597110754414 0.563402889245586"; depth 623 ; unknown ; synonymous GL192824.1 samtools variation 37249 37249 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192824.1 samtools variation 66594 66594 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; synonymous GL192824.1 samtools variation 92362 92362 . . . alleles " T C"; frequencies " 0.295774647887324 0.704225352112676"; depth 71 ; known ; synonymous GL192824.1 samtools variation 95290 95290 . . . alleles " C T"; frequencies " 0.715277777777778 0.284722222222222"; depth 144 ; known ; synonymous GL192824.1 samtools variation 95975 95975 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192824.1 samtools variation 101424 101424 . . . alleles " C G"; frequencies " 0.382978723404255 0.617021276595745"; depth 94 ; known ; N/A GL192824.1 samtools variation 102347 102347 . . . alleles " C T"; frequencies " 0.310344827586207 0.689655172413793"; depth 58 ; known ; N/A GL192824.1 samtools variation 102433 102433 . . . alleles " G T"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; N/A GL192824.1 samtools variation 102489 102489 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; N/A GL192824.1 samtools variation 200301 200301 . . . alleles " C G"; frequencies " 0.3125 0.6875"; depth 32 ; unknown ; N/A GL192824.1 samtools variation 220686 220686 . . . alleles " G A"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; N/A GL192824.1 samtools variation 275372 275372 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192824.1 samtools variation 275379 275379 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192824.1 samtools variation 289151 289151 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192824.1 samtools variation 296354 296354 . . . alleles " C T"; frequencies " 0.505263157894737 0.494736842105263"; depth 190 ; known ; synonymous GL192824.1 samtools variation 403316 403316 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 117 ; unknown ; synonymous GL192824.1 samtools variation 407845 407845 . . . alleles " G A"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; non-synonymous GL192824.1 samtools variation 408682 408682 . . . alleles " T C"; frequencies " 0.547169811320755 0.452830188679245"; depth 106 ; known ; N/A GL192824.1 samtools variation 408805 408805 . . . alleles " C G"; frequencies " 0.308943089430894 0.691056910569106"; depth 123 ; known ; N/A GL192824.1 samtools variation 408870 408870 . . . alleles " G A"; frequencies " 0.64367816091954 0.35632183908046"; depth 87 ; known ; N/A GL192824.1 samtools variation 412445 412445 . . . alleles " C A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192824.1 samtools variation 460839 460839 . . . alleles " A G"; frequencies " 0.649484536082474 0.350515463917526"; depth 97 ; known ; non-synonymous GL192824.1 samtools variation 470902 470902 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; N/A GL192824.1 samtools variation 485974 485974 . . . alleles " G A"; frequencies " 0.623015873015873 0.376984126984127"; depth 252 ; known ; synonymous GL192824.1 samtools variation 488382 488382 . . . alleles " T C"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; known ; N/A GL192824.1 samtools variation 488770 488770 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192824.1 samtools variation 489845 489845 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 128 ; known ; N/A GL192824.1 samtools variation 497136 497136 . . . alleles " G A"; frequencies " 0.645569620253165 0.354430379746835"; depth 79 ; known ; N/A GL192824.1 samtools variation 499852 499852 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192824.1 samtools variation 500254 500254 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192824.1 samtools variation 558510 558510 . . . alleles " C T"; frequencies " 0.582089552238806 0.417910447761194"; depth 67 ; known ; N/A GL192824.1 samtools variation 560487 560487 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192824.1 samtools variation 575714 575714 . . . alleles " A G"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; known ; N/A GL192824.1 samtools variation 614656 614656 . . . alleles " G A"; frequencies " 0.784256559766764 0.215743440233236"; depth 686 ; unknown ; N/A GL192824.1 samtools variation 614722 614722 . . . alleles " G A"; frequencies " 0.675074183976261 0.324925816023739"; depth 674 ; known ; N/A GL192824.1 samtools variation 615508 615508 . . . alleles " A G"; frequencies " 0.457943925233645 0.542056074766355"; depth 107 ; known ; N/A GL192824.1 samtools variation 617819 617819 . . . alleles " T C"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; known ; N/A GL192824.1 samtools variation 619881 619881 . . . alleles " T C"; frequencies " 0.60969387755102 0.39030612244898"; depth 784 ; unknown ; non-synonymous GL192824.1 samtools variation 635585 635585 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192824.1 samtools variation 659135 659135 . . . alleles " G A"; frequencies " 0.205882352941176 0.794117647058823"; depth 34 ; unknown ; N/A GL192824.1 samtools variation 659981 659981 . . . alleles " A G"; frequencies " 0.329041487839771 0.670958512160229"; depth 699 ; unknown ; non-synonymous GL192824.1 samtools variation 660039 660039 . . . alleles " T C"; frequencies " 0.308422301304864 0.691577698695136"; depth 843 ; unknown ; synonymous GL192824.1 samtools variation 660193 660193 . . . alleles " G A"; frequencies " 0.287937743190661 0.712062256809339"; depth 771 ; unknown ; non-synonymous GL192824.1 samtools variation 660299 660299 . . . alleles " T C"; frequencies " 0.315436241610738 0.684563758389262"; depth 894 ; unknown ; N/A GL192824.1 samtools variation 660823 660823 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192824.1 samtools variation 661273 661273 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 68 ; unknown ; synonymous GL192824.1 samtools variation 661469 661469 . . . alleles " A G"; frequencies " 0.394230769230769 0.605769230769231"; depth 104 ; unknown ; synonymous GL192824.1 samtools variation 666869 666869 . . . alleles " C T"; frequencies " 0.757009345794392 0.242990654205607"; depth 107 ; known ; synonymous GL192824.1 samtools variation 667750 667750 . . . alleles " C T"; frequencies " 0.622222222222222 0.377777777777778"; depth 45 ; unknown ; N/A GL192824.1 samtools variation 704028 704028 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192824.1 samtools variation 704371 704371 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192824.1 samtools variation 705104 705104 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192824.1 samtools variation 709319 709319 . . . alleles " C T"; frequencies " 0.755656108597285 0.244343891402715"; depth 221 ; known ; non-synonymous GL192824.1 samtools variation 710583 710583 . . . alleles " T C"; frequencies " 0.32258064516129 0.67741935483871"; depth 155 ; known ; N/A GL192824.1 samtools variation 711253 711253 . . . alleles " G C"; frequencies " 0.344262295081967 0.655737704918033"; depth 61 ; unknown ; N/A GL192824.1 samtools variation 711824 711824 . . . alleles " G A"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL192824.1 samtools variation 711886 711886 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192824.1 samtools variation 712357 712357 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 64 ; unknown ; N/A GL192824.1 samtools variation 725146 725146 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; non-synonymous GL192824.1 samtools variation 729560 729560 . . . alleles " A G"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; synonymous GL192824.1 samtools variation 781312 781312 . . . alleles " C A"; frequencies " 0.672131147540984 0.327868852459016"; depth 61 ; unknown ; N/A GL192824.1 samtools variation 781535 781535 . . . alleles " G T"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL192824.1 samtools variation 781804 781804 . . . alleles " T C"; frequencies " 0.325 0.675"; depth 80 ; known ; N/A GL192824.1 samtools variation 793895 793895 . . . alleles " G A"; frequencies " 0.661764705882353 0.338235294117647"; depth 136 ; unknown ; non-synonymous GL192824.1 samtools variation 804194 804194 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192824.1 samtools variation 805987 805987 . . . alleles " G T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192824.1 samtools variation 807471 807471 . . . alleles " C G"; frequencies " 0.793991416309013 0.206008583690987"; depth 233 ; unknown ; N/A GL192824.1 samtools variation 811940 811940 . . . alleles " G C"; frequencies " 0.25 0.75"; depth 80 ; known ; N/A GL192824.1 samtools variation 812361 812361 . . . alleles " G A"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; N/A GL192824.1 samtools variation 812371 812371 . . . alleles " T C"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; known ; N/A GL192824.1 samtools variation 812397 812397 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 42 ; known ; N/A GL192824.1 samtools variation 812570 812570 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL192824.1 samtools variation 815272 815272 . . . alleles " G A"; frequencies " 0.60655737704918 0.39344262295082"; depth 61 ; known ; N/A GL192824.1 samtools variation 818384 818384 . . . alleles " G T"; frequencies " 0.728646517739816 0.270696452036794"; depth 1522 ; known ; synonymous GL192824.1 samtools variation 831141 831141 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192824.1 samtools variation 834513 834513 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 20 ; unknown ; synonymous GL192824.1 samtools variation 873219 873219 . . . alleles " C T"; frequencies " 0.324074074074074 0.675925925925926"; depth 108 ; known ; synonymous GL192824.1 samtools variation 952150 952150 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL192824.1 samtools variation 969777 969777 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192824.1 samtools variation 973301 973301 . . . alleles " T C"; frequencies " 0.409090909090909 0.568181818181818"; depth 44 ; known ; non-synonymous GL192824.1 samtools variation 973332 973332 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 33 ; known ; non-synonymous GL192824.1 samtools variation 973875 973875 . . . alleles " A C"; frequencies " 0.326086956521739 0.673913043478261"; depth 92 ; known ; non-synonymous GL192824.1 samtools variation 1165090 1165090 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192824.1 samtools variation 1166053 1166053 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192824.1 samtools variation 1179424 1179424 . . . alleles " G T"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192824.1 samtools variation 1179520 1179520 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192824.1 samtools variation 1188799 1188799 . . . alleles " C T"; frequencies " 0.630434782608696 0.369565217391304"; depth 92 ; unknown ; N/A GL192824.1 samtools variation 1189293 1189293 . . . alleles " G T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192824.1 samtools variation 1243398 1243398 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; known ; N/A GL192824.1 samtools variation 1243846 1243846 . . . alleles " G C"; frequencies " 0.311111111111111 0.688888888888889"; depth 90 ; known ; N/A GL192824.1 samtools variation 1248880 1248880 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192824.1 samtools variation 1250615 1250615 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192824.1 samtools variation 1329729 1329729 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192824.1 samtools variation 1338574 1338574 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192825.1 samtools variation 84182 84182 . . . alleles " G A"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; known ; synonymous GL192825.1 samtools variation 86243 86243 . . . alleles " C A"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192825.1 samtools variation 86245 86245 . . . alleles " T A"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192825.1 samtools variation 86761 86761 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; known ; N/A GL192825.1 samtools variation 87177 87177 . . . alleles " A G"; frequencies " 0.282051282051282 0.717948717948718"; depth 39 ; known ; N/A GL192825.1 samtools variation 87376 87376 . . . alleles " A G"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL192825.1 samtools variation 98381 98381 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; synonymous GL192825.1 samtools variation 99590 99590 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; synonymous GL192825.1 samtools variation 100915 100915 . . . alleles " G A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; synonymous GL192825.1 samtools variation 101056 101056 . . . alleles " A G"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; unknown ; synonymous GL192825.1 samtools variation 102331 102331 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192825.1 samtools variation 102749 102749 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192825.1 samtools variation 187557 187557 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192825.1 samtools variation 283940 283940 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192825.1 samtools variation 307070 307070 . . . alleles " A G"; frequencies " 0.532374100719424 0.467625899280576"; depth 139 ; known ; synonymous GL192825.1 samtools variation 307398 307398 . . . alleles " T C"; frequencies " 0.390909090909091 0.609090909090909"; depth 110 ; known ; synonymous GL192825.1 samtools variation 313579 313579 . . . alleles " C T"; frequencies " 0.78099173553719 0.21900826446281"; depth 242 ; unknown ; synonymous GL192825.1 samtools variation 344625 344625 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192825.1 samtools variation 344679 344679 . . . alleles " A T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192825.1 samtools variation 485850 485850 . . . alleles " G A"; frequencies " 0.388429752066116 0.611570247933884"; depth 121 ; known ; N/A GL192825.1 samtools variation 487539 487539 . . . alleles " G T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192825.1 samtools variation 516873 516873 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192825.1 samtools variation 543139 543139 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 48 ; unknown ; synonymous GL192825.1 samtools variation 544413 544413 . . . alleles " G C"; frequencies " 0.770833333333333 0.229166666666667"; depth 96 ; unknown ; non-synonymous GL192825.1 samtools variation 549641 549641 . . . alleles " C T"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; synonymous GL192825.1 samtools variation 605694 605694 . . . alleles " T G"; frequencies " 0.217948717948718 0.782051282051282"; depth 78 ; known ; N/A GL192825.1 samtools variation 607736 607736 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; synonymous GL192825.1 samtools variation 608715 608715 . . . alleles " T G"; frequencies " 0.625 0.375"; depth 24 ; unknown ; synonymous GL192825.1 samtools variation 625402 625402 . . . alleles " T C"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; known ; synonymous GL192825.1 samtools variation 642854 642854 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192825.1 samtools variation 653714 653714 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 30 ; unknown ; non-synonymous GL192825.1 samtools variation 665323 665323 . . . alleles " A C"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; known ; N/A GL192825.1 samtools variation 697904 697904 . . . alleles " C A"; frequencies " 0.747422680412371 0.252577319587629"; depth 194 ; unknown ; N/A GL192825.1 samtools variation 698220 698220 . . . alleles " T A"; frequencies " 0.788321167883212 0.211678832116788"; depth 2055 ; unknown ; N/A GL192825.1 samtools variation 698268 698268 . . . alleles " C T"; frequencies " 0.787300177619893 0.212699822380107"; depth 2252 ; unknown ; N/A GL192825.1 samtools variation 698528 698528 . . . alleles " C T"; frequencies " 0.610141313383209 0.389858686616791"; depth 1203 ; unknown ; N/A GL192825.1 samtools variation 698704 698704 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192825.1 samtools variation 699206 699206 . . . alleles " C T"; frequencies " 0.515625 0.484375"; depth 64 ; unknown ; N/A GL192825.1 samtools variation 699270 699270 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; non-synonymous GL192825.1 samtools variation 699353 699353 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 56 ; unknown ; N/A GL192825.1 samtools variation 699912 699912 . . . alleles " C T"; frequencies " 0.746704331450094 0.253295668549906"; depth 1062 ; unknown ; synonymous GL192825.1 samtools variation 700094 700094 . . . alleles " A T"; frequencies " 0.541666666666667 0.458333333333333"; depth 48 ; unknown ; N/A GL192825.1 samtools variation 700396 700396 . . . alleles " A G"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; N/A GL192825.1 samtools variation 700446 700446 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192825.1 samtools variation 700557 700557 . . . alleles " G C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192825.1 samtools variation 700650 700650 . . . alleles " G A"; frequencies " 0.697674418604651 0.302325581395349"; depth 43 ; unknown ; N/A GL192825.1 samtools variation 700922 700922 . . . alleles " G A"; frequencies " 0.652719665271967 0.347280334728033"; depth 239 ; unknown ; synonymous GL192825.1 samtools variation 701766 701766 . . . alleles " G A"; frequencies " 0.296296296296296 0.703703703703704"; depth 81 ; known ; N/A GL192825.1 samtools variation 707964 707964 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL192825.1 samtools variation 710670 710670 . . . alleles " G A"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL192825.1 samtools variation 909742 909742 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192825.1 samtools variation 909845 909845 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192826.1 samtools variation 570422 570422 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192826.1 samtools variation 773279 773279 . . . alleles " G A"; frequencies " 0.333333333333333 0.583333333333333"; depth 12 ; unknown ; N/A GL192826.1 samtools variation 886130 886130 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; non-synonymous GL192826.1 samtools variation 993336 993336 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL192826.1 samtools variation 994652 994652 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 66 ; unknown ; N/A GL192826.1 samtools variation 996370 996370 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192826.1 samtools variation 1014697 1014697 . . . alleles " C T"; frequencies " 0.326086956521739 0.673913043478261"; depth 46 ; unknown ; N/A GL192826.1 samtools variation 1014743 1014743 . . . alleles " A C"; frequencies " 0.272727272727273 0.727272727272727"; depth 44 ; unknown ; N/A GL192826.1 samtools variation 1020863 1020863 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192828.1 samtools variation 519781 519781 . . . alleles " A G"; frequencies " 0.465116279069767 0.534883720930233"; depth 43 ; known ; synonymous GL192828.1 samtools variation 702134 702134 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 92 ; unknown ; N/A GL192828.1 samtools variation 975764 975764 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192828.1 samtools variation 1047265 1047265 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192828.1 samtools variation 1047518 1047518 . . . alleles " C A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192828.1 samtools variation 1053112 1053112 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192828.1 samtools variation 1065752 1065752 . . . alleles " T C"; frequencies " 0.45360824742268 0.54639175257732"; depth 97 ; unknown ; N/A GL192828.1 samtools variation 1066976 1066976 . . . alleles " A G"; frequencies " 0.24 0.76"; depth 25 ; unknown ; N/A GL192828.1 samtools variation 1067279 1067279 . . . alleles " G C"; frequencies " 0.519230769230769 0.480769230769231"; depth 52 ; unknown ; N/A GL192828.1 samtools variation 1067742 1067742 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 144 ; unknown ; N/A GL192828.1 samtools variation 1067896 1067896 . . . alleles " G A"; frequencies " 0.417910447761194 0.582089552238806"; depth 67 ; unknown ; N/A GL192828.1 samtools variation 1068354 1068354 . . . alleles " T G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192828.1 samtools variation 1069800 1069800 . . . alleles " A T"; frequencies " 0.514767932489452 0.485232067510549"; depth 237 ; unknown ; N/A GL192828.1 samtools variation 1070046 1070046 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192828.1 samtools variation 1070183 1070183 . . . alleles " T C"; frequencies " 0.214876033057851 0.785123966942149"; depth 121 ; unknown ; N/A GL192829.1 samtools variation 52878 52878 . . . alleles " G A"; frequencies " 0.376923076923077 0.623076923076923"; depth 130 ; unknown ; N/A GL192829.1 samtools variation 265169 265169 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192829.1 samtools variation 592677 592677 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192829.1 samtools variation 593272 593272 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; synonymous GL192829.1 samtools variation 593638 593638 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; synonymous GL192829.1 samtools variation 883551 883551 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192829.1 samtools variation 903958 903958 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192829.1 samtools variation 904387 904387 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL192830.1 samtools variation 58195 58195 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192830.1 samtools variation 97362 97362 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192830.1 samtools variation 192751 192751 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192830.1 samtools variation 368340 368340 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192830.1 samtools variation 443424 443424 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192830.1 samtools variation 446504 446504 . . . alleles " G A"; frequencies " 0.713592233009709 0.286407766990291"; depth 206 ; known ; N/A GL192830.1 samtools variation 448402 448402 . . . alleles " C A"; frequencies " 0.712328767123288 0.287671232876712"; depth 73 ; known ; synonymous GL192830.1 samtools variation 471535 471535 . . . alleles " C G"; frequencies " 0.674107142857143 0.325892857142857"; depth 224 ; known ; non-synonymous GL192830.1 samtools variation 475270 475270 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; known ; synonymous GL192830.1 samtools variation 504541 504541 . . . alleles " T C"; frequencies " 0.584 0.416"; depth 125 ; known ; N/A GL192830.1 samtools variation 507769 507769 . . . alleles " A G"; frequencies " 0.300469483568075 0.699530516431925"; depth 213 ; known ; non-synonymous GL192830.1 samtools variation 508236 508236 . . . alleles " T C"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; known ; N/A GL192830.1 samtools variation 508317 508317 . . . alleles " G T"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; known ; N/A GL192830.1 samtools variation 511337 511337 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192830.1 samtools variation 512414 512414 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; synonymous GL192830.1 samtools variation 513872 513872 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; synonymous GL192830.1 samtools variation 517575 517575 . . . alleles " A C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; non-synonymous GL192830.1 samtools variation 528337 528337 . . . alleles " G A"; frequencies " 0.380952380952381 0.619047619047619"; depth 63 ; known ; synonymous GL192830.1 samtools variation 529955 529955 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL192830.1 samtools variation 603634 603634 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192830.1 samtools variation 606608 606608 . . . alleles " A G"; frequencies " 0.721739130434783 0.278260869565217"; depth 230 ; unknown ; synonymous GL192830.1 samtools variation 839234 839234 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; known ; synonymous GL192830.1 samtools variation 854877 854877 . . . alleles " A C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192830.1 samtools variation 874847 874847 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL192830.1 samtools variation 877271 877271 . . . alleles " T C"; frequencies " 0.672727272727273 0.327272727272727"; depth 55 ; known ; N/A GL192830.1 samtools variation 880706 880706 . . . alleles " G A"; frequencies " 0.534090909090909 0.465909090909091"; depth 88 ; known ; synonymous GL192830.1 samtools variation 881174 881174 . . . alleles " T C"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; synonymous GL192830.1 samtools variation 960526 960526 . . . alleles " G A"; frequencies " 0.344086021505376 0.655913978494624"; depth 186 ; unknown ; synonymous GL192830.1 samtools variation 964515 964515 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192830.1 samtools variation 988550 988550 . . . alleles " C T"; frequencies " 0.527777777777778 0.472222222222222"; depth 180 ; unknown ; non-synonymous GL192831.1 samtools variation 216071 216071 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192831.1 samtools variation 218801 218801 . . . alleles " C A"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL192832.1 samtools variation 801182 801182 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192832.1 samtools variation 804501 804501 . . . alleles " T A"; frequencies " 0.428571428571429 0.571428571428571"; depth 140 ; known ; N/A GL192832.1 samtools variation 805200 805200 . . . alleles " G C"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192832.1 samtools variation 805251 805251 . . . alleles " T C"; frequencies " 0.383561643835616 0.616438356164384"; depth 73 ; known ; N/A GL192832.1 samtools variation 806009 806009 . . . alleles " C T"; frequencies " 0.682539682539683 0.317460317460317"; depth 126 ; unknown ; N/A GL192832.1 samtools variation 815815 815815 . . . alleles " T G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192832.1 samtools variation 817473 817473 . . . alleles " C T"; frequencies " 0.675 0.325"; depth 40 ; known ; N/A GL192832.1 samtools variation 824201 824201 . . . alleles " G C"; frequencies " 0.758333333333333 0.241666666666667"; depth 120 ; unknown ; synonymous GL192832.1 samtools variation 833853 833853 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192832.1 samtools variation 885115 885115 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192832.1 samtools variation 885664 885664 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192832.1 samtools variation 899839 899839 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192832.1 samtools variation 909459 909459 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL192832.1 samtools variation 911608 911608 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192834.1 samtools variation 455043 455043 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192834.1 samtools variation 461998 461998 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192834.1 samtools variation 462468 462468 . . . alleles " A C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192834.1 samtools variation 462480 462480 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; known ; N/A GL192834.1 samtools variation 473090 473090 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192834.1 samtools variation 540899 540899 . . . alleles " T C"; frequencies " 0.607843137254902 0.392156862745098"; depth 51 ; unknown ; N/A GL192834.1 samtools variation 562970 562970 . . . alleles " A G"; frequencies " 0.411214953271028 0.585669781931464"; depth 321 ; known ; N/A GL192834.1 samtools variation 562977 562977 . . . alleles " G C"; frequencies " 0.400641025641026 0.599358974358974"; depth 312 ; known ; N/A GL192834.1 samtools variation 563116 563116 . . . alleles " T C"; frequencies " 0.283505154639175 0.716494845360825"; depth 388 ; known ; N/A GL192834.1 samtools variation 574506 574506 . . . alleles " C T"; frequencies " 0.688118811881188 0.311881188118812"; depth 202 ; unknown ; N/A GL192834.1 samtools variation 574809 574809 . . . alleles " G C"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; N/A GL192834.1 samtools variation 575784 575784 . . . alleles " G A"; frequencies " 0.27755905511811 0.72244094488189"; depth 508 ; unknown ; synonymous GL192834.1 samtools variation 578216 578216 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192834.1 samtools variation 688067 688067 . . . alleles " A G"; frequencies " 0.511111111111111 0.488888888888889"; depth 45 ; known ; N/A GL192834.1 samtools variation 688110 688110 . . . alleles " T C"; frequencies " 0.480769230769231 0.519230769230769"; depth 52 ; known ; N/A GL192834.1 samtools variation 688223 688223 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 72 ; known ; N/A GL192834.1 samtools variation 688328 688328 . . . alleles " G A"; frequencies " 0.58 0.42"; depth 50 ; known ; N/A GL192834.1 samtools variation 846527 846527 . . . alleles " C T"; frequencies " 0.657894736842105 0.342105263157895"; depth 114 ; unknown ; N/A GL192834.1 samtools variation 846627 846627 . . . alleles " A G"; frequencies " 0.516129032258065 0.483870967741935"; depth 62 ; unknown ; N/A GL192834.1 samtools variation 846639 846639 . . . alleles " G C"; frequencies " 0.472727272727273 0.527272727272727"; depth 55 ; unknown ; N/A GL192834.1 samtools variation 846710 846710 . . . alleles " C A"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; unknown ; N/A GL192834.1 samtools variation 847471 847471 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192834.1 samtools variation 847552 847552 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192834.1 samtools variation 847558 847558 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192834.1 samtools variation 847921 847921 . . . alleles " G A"; frequencies " 0.705479452054795 0.294520547945205"; depth 292 ; unknown ; synonymous GL192834.1 samtools variation 848610 848610 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192834.1 samtools variation 849949 849949 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192834.1 samtools variation 856396 856396 . . . alleles " A G"; frequencies " 0.665217391304348 0.334782608695652"; depth 230 ; unknown ; synonymous GL192834.1 samtools variation 862043 862043 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 70 ; unknown ; synonymous GL192834.1 samtools variation 1100250 1100250 . . . alleles " A G"; frequencies " 0.463492063492064 0.536507936507936"; depth 315 ; unknown ; non-synonymous GL192834.1 samtools variation 1102721 1102721 . . . alleles " C T"; frequencies " 0.675 0.325"; depth 40 ; unknown ; N/A GL192834.1 samtools variation 1103132 1103132 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192834.1 samtools variation 1103476 1103476 . . . alleles " G C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192834.1 samtools variation 1103582 1103582 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192834.1 samtools variation 1104288 1104288 . . . alleles " G T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192834.1 samtools variation 1104654 1104654 . . . alleles " A G"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL192834.1 samtools variation 1104904 1104904 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192834.1 samtools variation 1110583 1110583 . . . alleles " T C"; frequencies " 0.648936170212766 0.351063829787234"; depth 94 ; unknown ; N/A GL192834.1 samtools variation 1114272 1114272 . . . alleles " C T"; frequencies " 0.383177570093458 0.616822429906542"; depth 107 ; unknown ; N/A GL192834.1 samtools variation 1116133 1116133 . . . alleles " T C"; frequencies " 0.728571428571429 0.271428571428571"; depth 70 ; unknown ; N/A GL192834.1 samtools variation 1118059 1118059 . . . alleles " T A"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; N/A GL192834.1 samtools variation 1127982 1127982 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192834.1 samtools variation 1139401 1139401 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192834.1 samtools variation 1153230 1153230 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192834.1 samtools variation 1153257 1153257 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192834.1 samtools variation 1157487 1157487 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192834.1 samtools variation 1157914 1157914 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192834.1 samtools variation 1161256 1161256 . . . alleles " A C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192834.1 samtools variation 1331704 1331704 . . . alleles " C T"; frequencies " 0.2125 0.7875"; depth 80 ; known ; N/A GL192834.1 samtools variation 1335900 1335900 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 24 ; known ; N/A GL192834.1 samtools variation 1336030 1336030 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 25 ; known ; N/A GL192834.1 samtools variation 1336283 1336283 . . . alleles " A C"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL192834.1 samtools variation 1336588 1336588 . . . alleles " G C"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; known ; N/A GL192834.1 samtools variation 1336604 1336604 . . . alleles " G A"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL192835.1 samtools variation 460133 460133 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 48 ; unknown ; N/A GL192835.1 samtools variation 733729 733729 . . . alleles " G A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; known ; N/A GL192835.1 samtools variation 1056499 1056499 . . . alleles " C A"; frequencies " 0.4375 0.5625"; depth 48 ; unknown ; N/A GL192835.1 samtools variation 1123113 1123113 . . . alleles " A C"; frequencies " 0.63953488372093 0.36046511627907"; depth 86 ; known ; N/A GL192835.1 samtools variation 1134723 1134723 . . . alleles " C T"; frequencies " 0.572115384615385 0.427884615384615"; depth 208 ; unknown ; synonymous GL192835.1 samtools variation 1135652 1135652 . . . alleles " G T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192835.1 samtools variation 1135660 1135660 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192835.1 samtools variation 1139051 1139051 . . . alleles " G A"; frequencies " 0.467532467532468 0.532467532467532"; depth 231 ; known ; synonymous GL192835.1 samtools variation 1143272 1143272 . . . alleles " C T"; frequencies " 0.489795918367347 0.510204081632653"; depth 147 ; unknown ; N/A GL192835.1 samtools variation 1143682 1143682 . . . alleles " G A"; frequencies " 0.586666666666667 0.413333333333333"; depth 75 ; unknown ; N/A GL192835.1 samtools variation 1143747 1143747 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 40 ; unknown ; N/A GL192835.1 samtools variation 1143845 1143845 . . . alleles " C A"; frequencies " 0.534246575342466 0.465753424657534"; depth 73 ; unknown ; N/A GL192835.1 samtools variation 1205171 1205171 . . . alleles " C A"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; unknown ; N/A GL192835.1 samtools variation 1275289 1275289 . . . alleles " C T"; frequencies " 0.335483870967742 0.664516129032258"; depth 465 ; unknown ; N/A GL192835.1 samtools variation 1276563 1276563 . . . alleles " A G"; frequencies " 0.505376344086022 0.494623655913978"; depth 186 ; unknown ; N/A GL192835.1 samtools variation 1276730 1276730 . . . alleles " G T"; frequencies " 0.460431654676259 0.539568345323741"; depth 139 ; unknown ; N/A GL192835.1 samtools variation 1300259 1300259 . . . alleles " A C"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; known ; N/A GL192835.1 samtools variation 1302162 1302162 . . . alleles " C T"; frequencies " 0.661764705882353 0.338235294117647"; depth 68 ; unknown ; N/A GL192835.1 samtools variation 1304755 1304755 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192835.1 samtools variation 1324581 1324581 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192837.1 samtools variation 353946 353946 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192838.1 samtools variation 89293 89293 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192838.1 samtools variation 89334 89334 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192838.1 samtools variation 775883 775883 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; synonymous GL192838.1 samtools variation 855598 855598 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; synonymous GL192839.1 samtools variation 940851 940851 . . . alleles " C T"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; synonymous GL192839.1 samtools variation 941412 941412 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; synonymous GL192839.1 samtools variation 943891 943891 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192839.1 samtools variation 943893 943893 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192839.1 samtools variation 1211191 1211191 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192839.1 samtools variation 1214721 1214721 . . . alleles " G C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192839.1 samtools variation 1229069 1229069 . . . alleles " C T"; frequencies " 0.445378151260504 0.554621848739496"; depth 119 ; known ; N/A GL192839.1 samtools variation 1229123 1229123 . . . alleles " A G"; frequencies " 0.565217391304348 0.434782608695652"; depth 115 ; known ; N/A GL192840.1 samtools variation 168520 168520 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192840.1 samtools variation 168666 168666 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192840.1 samtools variation 168822 168822 . . . alleles " G C"; frequencies " 0.473684210526316 0.526315789473684"; depth 57 ; known ; N/A GL192840.1 samtools variation 168880 168880 . . . alleles " T G"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; unknown ; N/A GL192840.1 samtools variation 168884 168884 . . . alleles " G C"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; unknown ; N/A GL192840.1 samtools variation 170887 170887 . . . alleles " A C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192840.1 samtools variation 181007 181007 . . . alleles " G C"; frequencies " 0.719298245614035 0.280701754385965"; depth 57 ; unknown ; N/A GL192840.1 samtools variation 182303 182303 . . . alleles " G C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; synonymous GL192840.1 samtools variation 183171 183171 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192840.1 samtools variation 184321 184321 . . . alleles " G A"; frequencies " 0.609756097560976 0.390243902439024"; depth 41 ; unknown ; synonymous GL192840.1 samtools variation 184450 184450 . . . alleles " T A"; frequencies " 0.627906976744186 0.372093023255814"; depth 43 ; unknown ; synonymous GL192840.1 samtools variation 184471 184471 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 45 ; unknown ; synonymous GL192840.1 samtools variation 237852 237852 . . . alleles " T C"; frequencies " 0.283783783783784 0.716216216216216"; depth 74 ; known ; N/A GL192840.1 samtools variation 238508 238508 . . . alleles " T C"; frequencies " 0.737864077669903 0.262135922330097"; depth 103 ; unknown ; N/A GL192840.1 samtools variation 254078 254078 . . . alleles " G C"; frequencies " 0.238095238095238 0.761904761904762"; depth 105 ; known ; synonymous GL192840.1 samtools variation 299694 299694 . . . alleles " T C"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192840.1 samtools variation 300096 300096 . . . alleles " A G"; frequencies " 0.715909090909091 0.284090909090909"; depth 88 ; unknown ; N/A GL192840.1 samtools variation 300240 300240 . . . alleles " T G"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; known ; N/A GL192840.1 samtools variation 300688 300688 . . . alleles " C T"; frequencies " 0.702127659574468 0.297872340425532"; depth 94 ; unknown ; N/A GL192840.1 samtools variation 301600 301600 . . . alleles " C G"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; unknown ; N/A GL192840.1 samtools variation 308637 308637 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192840.1 samtools variation 613833 613833 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192840.1 samtools variation 616700 616700 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192840.1 samtools variation 618559 618559 . . . alleles " G A"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL192840.1 samtools variation 699253 699253 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192840.1 samtools variation 701456 701456 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192840.1 samtools variation 702061 702061 . . . alleles " A G"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; known ; N/A GL192840.1 samtools variation 717889 717889 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192840.1 samtools variation 744070 744070 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192840.1 samtools variation 744100 744100 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192840.1 samtools variation 746128 746128 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; known ; N/A GL192840.1 samtools variation 746135 746135 . . . alleles " G C"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; known ; N/A GL192840.1 samtools variation 746230 746230 . . . alleles " G C"; frequencies " 0.261363636363636 0.738636363636364"; depth 88 ; known ; N/A GL192840.1 samtools variation 746326 746326 . . . alleles " A G"; frequencies " 0.241758241758242 0.758241758241758"; depth 91 ; known ; N/A GL192840.1 samtools variation 746423 746423 . . . alleles " G A"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; known ; N/A GL192840.1 samtools variation 746509 746509 . . . alleles " G A"; frequencies " 0.342857142857143 0.657142857142857"; depth 35 ; known ; N/A GL192840.1 samtools variation 746572 746572 . . . alleles " T A"; frequencies " 0.333333333333333 0.666666666666667"; depth 51 ; known ; N/A GL192840.1 samtools variation 747039 747039 . . . alleles " G A"; frequencies " 0.683333333333333 0.316666666666667"; depth 180 ; known ; N/A GL192840.1 samtools variation 747104 747104 . . . alleles " T A"; frequencies " 0.712820512820513 0.287179487179487"; depth 195 ; known ; N/A GL192840.1 samtools variation 747343 747343 . . . alleles " G C"; frequencies " 0.483333333333333 0.516666666666667"; depth 120 ; known ; N/A GL192840.1 samtools variation 747392 747392 . . . alleles " G T"; frequencies " 0.615384615384615 0.384615384615385"; depth 91 ; known ; N/A GL192840.1 samtools variation 747432 747432 . . . alleles " G A"; frequencies " 0.640449438202247 0.359550561797753"; depth 89 ; known ; N/A GL192840.1 samtools variation 764596 764596 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 32 ; known ; N/A GL192840.1 samtools variation 771660 771660 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192840.1 samtools variation 784993 784993 . . . alleles " G C"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192840.1 samtools variation 791383 791383 . . . alleles " T A"; frequencies " 0.796407185628742 0.203592814371257"; depth 167 ; unknown ; N/A GL192840.1 samtools variation 820419 820419 . . . alleles " G A"; frequencies " 0.271629778672032 0.728370221327968"; depth 497 ; known ; N/A GL192840.1 samtools variation 869721 869721 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192840.1 samtools variation 869790 869790 . . . alleles " T C"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192840.1 samtools variation 869845 869845 . . . alleles " T C"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192840.1 samtools variation 923075 923075 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL192840.1 samtools variation 946579 946579 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 50 ; unknown ; non-synonymous GL192840.1 samtools variation 949643 949643 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; unknown ; N/A GL192840.1 samtools variation 950809 950809 . . . alleles " T C"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL192840.1 samtools variation 1010012 1010012 . . . alleles " T C"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL192840.1 samtools variation 1010088 1010088 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192840.1 samtools variation 1050130 1050130 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192840.1 samtools variation 1192386 1192386 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 140 ; unknown ; N/A GL192840.1 samtools variation 1205219 1205219 . . . alleles " G A"; frequencies " 0.226666666666667 0.773333333333333"; depth 75 ; known ; synonymous GL192841.1 samtools variation 33556 33556 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192841.1 samtools variation 36616 36616 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL192841.1 samtools variation 36724 36724 . . . alleles " C T"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; known ; N/A GL192841.1 samtools variation 409239 409239 . . . alleles " T C"; frequencies " 0.755102040816326 0.244897959183673"; depth 49 ; unknown ; N/A GL192841.1 samtools variation 410506 410506 . . . alleles " A G"; frequencies " 0.308510638297872 0.691489361702128"; depth 94 ; unknown ; N/A GL192841.1 samtools variation 411343 411343 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192841.1 samtools variation 415406 415406 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192841.1 samtools variation 425066 425066 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192841.1 samtools variation 452247 452247 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192841.1 samtools variation 501671 501671 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; unknown ; N/A GL192841.1 samtools variation 505918 505918 . . . alleles " A G"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; known ; N/A GL192841.1 samtools variation 506646 506646 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192841.1 samtools variation 517249 517249 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192841.1 samtools variation 524534 524534 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192841.1 samtools variation 588117 588117 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL192841.1 samtools variation 660438 660438 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192841.1 samtools variation 671153 671153 . . . alleles " C G"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; known ; N/A GL192841.1 samtools variation 688683 688683 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192841.1 samtools variation 699300 699300 . . . alleles " A G"; frequencies " 0.710526315789474 0.289473684210526"; depth 380 ; unknown ; non-synonymous GL192841.1 samtools variation 716516 716516 . . . alleles " G T"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL192841.1 samtools variation 717867 717867 . . . alleles " G A"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192841.1 samtools variation 719151 719151 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192841.1 samtools variation 735625 735625 . . . alleles " G T"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; known ; N/A GL192841.1 samtools variation 829816 829816 . . . alleles " C T"; frequencies " 0.281094527363184 0.718905472636816"; depth 402 ; unknown ; N/A GL192841.1 samtools variation 838410 838410 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 39 ; unknown ; N/A GL192841.1 samtools variation 841799 841799 . . . alleles " T G"; frequencies " 0.268292682926829 0.731707317073171"; depth 41 ; unknown ; N/A GL192841.1 samtools variation 842520 842520 . . . alleles " A T"; frequencies " 0.311827956989247 0.688172043010753"; depth 93 ; unknown ; N/A GL192841.1 samtools variation 843772 843772 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192841.1 samtools variation 845096 845096 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 40 ; unknown ; N/A GL192841.1 samtools variation 845120 845120 . . . alleles " C T"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL192841.1 samtools variation 845312 845312 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192841.1 samtools variation 845324 845324 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL192841.1 samtools variation 929785 929785 . . . alleles " A G"; frequencies " 0.295454545454545 0.704545454545455"; depth 44 ; unknown ; N/A GL192841.1 samtools variation 930287 930287 . . . alleles " G C"; frequencies " 0.375 0.625"; depth 32 ; unknown ; N/A GL192841.1 samtools variation 930498 930498 . . . alleles " A G"; frequencies " 0.291139240506329 0.708860759493671"; depth 79 ; unknown ; N/A GL192841.1 samtools variation 932053 932053 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; unknown ; synonymous GL192841.1 samtools variation 946563 946563 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 42 ; unknown ; synonymous GL192842.1 samtools variation 358319 358319 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192842.1 samtools variation 401980 401980 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 60 ; unknown ; N/A GL192842.1 samtools variation 1035225 1035225 . . . alleles " C T"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192842.1 samtools variation 1035315 1035315 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; N/A GL192842.1 samtools variation 1035354 1035354 . . . alleles " C T"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; known ; N/A GL192842.1 samtools variation 1035492 1035492 . . . alleles " A G"; frequencies " 0.458333333333333 0.541666666666667"; depth 48 ; known ; N/A GL192842.1 samtools variation 1035561 1035561 . . . alleles " G A"; frequencies " 0.547619047619048 0.452380952380952"; depth 42 ; known ; N/A GL192842.1 samtools variation 1042128 1042128 . . . alleles " C A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192842.1 samtools variation 1140070 1140070 . . . alleles " C A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL192842.1 samtools variation 1174021 1174021 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192842.1 samtools variation 1174356 1174356 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192842.1 samtools variation 1179202 1179202 . . . alleles " G A"; frequencies " 0.712871287128713 0.287128712871287"; depth 303 ; unknown ; synonymous GL192842.1 samtools variation 1186041 1186041 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192842.1 samtools variation 1188882 1188882 . . . alleles " A C"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL192842.1 samtools variation 1189003 1189003 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192842.1 samtools variation 1189110 1189110 . . . alleles " G C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192842.1 samtools variation 1189282 1189282 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192842.1 samtools variation 1191948 1191948 . . . alleles " A G"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; N/A GL192842.1 samtools variation 1192771 1192771 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL192842.1 samtools variation 1194721 1194721 . . . alleles " T C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192842.1 samtools variation 1198021 1198021 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192842.1 samtools variation 1198888 1198888 . . . alleles " G A"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL192842.1 samtools variation 1201479 1201479 . . . alleles " T C"; frequencies " 0.654545454545455 0.345454545454545"; depth 55 ; unknown ; N/A GL192842.1 samtools variation 1201798 1201798 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192842.1 samtools variation 1202369 1202369 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192842.1 samtools variation 1202440 1202440 . . . alleles " A G"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; known ; N/A GL192842.1 samtools variation 1202539 1202539 . . . alleles " G A"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; N/A GL192842.1 samtools variation 1204042 1204042 . . . alleles " C A"; frequencies " 0.538732394366197 0.457746478873239"; depth 284 ; unknown ; synonymous GL192842.1 samtools variation 1204612 1204612 . . . alleles " G A"; frequencies " 0.560606060606061 0.439393939393939"; depth 66 ; unknown ; N/A GL192842.1 samtools variation 1204645 1204645 . . . alleles " G A"; frequencies " 0.650793650793651 0.349206349206349"; depth 63 ; unknown ; N/A GL192842.1 samtools variation 1204691 1204691 . . . alleles " C A"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL192842.1 samtools variation 1205281 1205281 . . . alleles " G T"; frequencies " 0.405797101449275 0.594202898550725"; depth 69 ; unknown ; N/A GL192842.1 samtools variation 1205811 1205811 . . . alleles " T C"; frequencies " 0.631067961165049 0.368932038834951"; depth 103 ; unknown ; N/A GL192842.1 samtools variation 1206550 1206550 . . . alleles " C A"; frequencies " 0.614035087719298 0.385964912280702"; depth 57 ; unknown ; N/A GL192842.1 samtools variation 1206678 1206678 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192842.1 samtools variation 1206982 1206982 . . . alleles " C T"; frequencies " 0.690095846645367 0.309904153354633"; depth 313 ; unknown ; synonymous GL192842.1 samtools variation 1207284 1207284 . . . alleles " A C"; frequencies " 0.384615384615385 0.615384615384615"; depth 663 ; known ; non-synonymous GL192842.1 samtools variation 1210348 1210348 . . . alleles " A G"; frequencies " 0.423728813559322 0.576271186440678"; depth 59 ; unknown ; N/A GL192842.1 samtools variation 1213394 1213394 . . . alleles " C T"; frequencies " 0.659574468085106 0.340425531914894"; depth 329 ; unknown ; N/A GL192842.1 samtools variation 1224184 1224184 . . . alleles " C A"; frequencies " 0.211538461538462 0.788461538461538"; depth 52 ; unknown ; N/A GL192842.1 samtools variation 1225677 1225677 . . . alleles " T C"; frequencies " 0.78525641025641 0.21474358974359"; depth 312 ; unknown ; N/A GL192842.1 samtools variation 1226011 1226011 . . . alleles " C G"; frequencies " 0.381578947368421 0.618421052631579"; depth 532 ; unknown ; N/A GL192842.1 samtools variation 1226251 1226251 . . . alleles " A G"; frequencies " 0.739520958083832 0.260479041916168"; depth 334 ; unknown ; N/A GL192842.1 samtools variation 1226375 1226375 . . . alleles " A T"; frequencies " 0.650872817955112 0.349127182044888"; depth 401 ; unknown ; N/A GL192842.1 samtools variation 1227553 1227553 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192842.1 samtools variation 1228119 1228119 . . . alleles " C G"; frequencies " 0.344086021505376 0.655913978494624"; depth 93 ; unknown ; N/A GL192842.1 samtools variation 1229415 1229415 . . . alleles " C T"; frequencies " 0.780821917808219 0.219178082191781"; depth 73 ; unknown ; N/A GL192842.1 samtools variation 1229518 1229518 . . . alleles " T C"; frequencies " 0.236363636363636 0.763636363636364"; depth 55 ; unknown ; N/A GL192842.1 samtools variation 1231027 1231027 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192842.1 samtools variation 1231117 1231117 . . . alleles " A G"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192842.1 samtools variation 1231157 1231157 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192842.1 samtools variation 1231288 1231288 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 32 ; unknown ; N/A GL192842.1 samtools variation 1231375 1231375 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; N/A GL192842.1 samtools variation 1231381 1231381 . . . alleles " G A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192842.1 samtools variation 1231443 1231443 . . . alleles " G C"; frequencies " 0.622222222222222 0.377777777777778"; depth 45 ; unknown ; N/A GL192842.1 samtools variation 1231460 1231460 . . . alleles " G T"; frequencies " 0.482758620689655 0.517241379310345"; depth 87 ; unknown ; N/A GL192842.1 samtools variation 1232089 1232089 . . . alleles " A G"; frequencies " 0.377358490566038 0.622641509433962"; depth 53 ; unknown ; N/A GL192842.1 samtools variation 1233591 1233591 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 33 ; unknown ; N/A GL192842.1 samtools variation 1235577 1235577 . . . alleles " C T"; frequencies " 0.73469387755102 0.26530612244898"; depth 49 ; unknown ; N/A GL192842.1 samtools variation 1237202 1237202 . . . alleles " A G"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL192842.1 samtools variation 1238607 1238607 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL192842.1 samtools variation 1238878 1238878 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192842.1 samtools variation 1240544 1240544 . . . alleles " T C"; frequencies " 0.775862068965517 0.224137931034483"; depth 58 ; unknown ; N/A GL192842.1 samtools variation 1241330 1241330 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 40 ; unknown ; N/A GL192842.1 samtools variation 1242043 1242043 . . . alleles " G A"; frequencies " 0.459459459459459 0.540540540540541"; depth 37 ; unknown ; N/A GL192842.1 samtools variation 1242403 1242403 . . . alleles " C T"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL192842.1 samtools variation 1242431 1242431 . . . alleles " G A"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL192842.1 samtools variation 1248286 1248286 . . . alleles " C T"; frequencies " 0.387254901960784 0.612745098039216"; depth 408 ; unknown ; synonymous GL192842.1 samtools variation 1250519 1250519 . . . alleles " G A"; frequencies " 0.734982332155477 0.265017667844523"; depth 283 ; unknown ; non-synonymous GL192842.1 samtools variation 1250921 1250921 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 144 ; unknown ; N/A GL192842.1 samtools variation 1253161 1253161 . . . alleles " T C"; frequencies " 0.626086956521739 0.373913043478261"; depth 115 ; unknown ; N/A GL192842.1 samtools variation 1253545 1253545 . . . alleles " C T"; frequencies " 0.267605633802817 0.732394366197183"; depth 71 ; unknown ; N/A GL192842.1 samtools variation 1253689 1253689 . . . alleles " C T"; frequencies " 0.595238095238095 0.404761904761905"; depth 84 ; unknown ; N/A GL192842.1 samtools variation 1253709 1253709 . . . alleles " T C"; frequencies " 0.441558441558442 0.558441558441558"; depth 77 ; known ; N/A GL192842.1 samtools variation 1253975 1253975 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192842.1 samtools variation 1255729 1255729 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192844.1 samtools variation 160303 160303 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192844.1 samtools variation 193174 193174 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192844.1 samtools variation 196365 196365 . . . alleles " G A"; frequencies " 0.755555555555556 0.244444444444444"; depth 180 ; unknown ; synonymous GL192844.1 samtools variation 201626 201626 . . . alleles " C T"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192844.1 samtools variation 209672 209672 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL192844.1 samtools variation 225021 225021 . . . alleles " T C"; frequencies " 0.442028985507246 0.550724637681159"; depth 138 ; known ; synonymous GL192844.1 samtools variation 225204 225204 . . . alleles " C T"; frequencies " 0.78740157480315 0.21259842519685"; depth 127 ; unknown ; synonymous GL192844.1 samtools variation 229718 229718 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 24 ; known ; N/A GL192844.1 samtools variation 241881 241881 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192844.1 samtools variation 439485 439485 . . . alleles " T C"; frequencies " 0.402439024390244 0.597560975609756"; depth 82 ; unknown ; synonymous GL192844.1 samtools variation 458485 458485 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 138 ; unknown ; N/A GL192844.1 samtools variation 459813 459813 . . . alleles " T C"; frequencies " 0.687732342007435 0.312267657992565"; depth 269 ; unknown ; N/A GL192844.1 samtools variation 462343 462343 . . . alleles " C A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192844.1 samtools variation 481871 481871 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; non-synonymous GL192844.1 samtools variation 511716 511716 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192844.1 samtools variation 512219 512219 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192844.1 samtools variation 512256 512256 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192844.1 samtools variation 512490 512490 . . . alleles " A C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192844.1 samtools variation 512496 512496 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192844.1 samtools variation 514981 514981 . . . alleles " C A"; frequencies " 0.532258064516129 0.467741935483871"; depth 62 ; known ; non-synonymous GL192844.1 samtools variation 862687 862687 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 128 ; unknown ; N/A GL192844.1 samtools variation 862760 862760 . . . alleles " A C"; frequencies " 0.676767676767677 0.313131313131313"; depth 99 ; unknown ; N/A GL192844.1 samtools variation 864767 864767 . . . alleles " T C"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192844.1 samtools variation 864964 864964 . . . alleles " T C"; frequencies " 0.696969696969697 0.303030303030303"; depth 66 ; unknown ; N/A GL192844.1 samtools variation 865468 865468 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192844.1 samtools variation 865789 865789 . . . alleles " A G"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192844.1 samtools variation 865842 865842 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL192844.1 samtools variation 865929 865929 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL192844.1 samtools variation 870768 870768 . . . alleles " G C"; frequencies " 0.597560975609756 0.399390243902439"; depth 328 ; unknown ; non-synonymous GL192844.1 samtools variation 873521 873521 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; N/A GL192844.1 samtools variation 873592 873592 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL192844.1 samtools variation 875377 875377 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; synonymous GL192844.1 samtools variation 893804 893804 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192844.1 samtools variation 918154 918154 . . . alleles " G A"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; synonymous GL192844.1 samtools variation 929170 929170 . . . alleles " G A"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; synonymous GL192844.1 samtools variation 930934 930934 . . . alleles " T C"; frequencies " 0.325 0.6625"; depth 80 ; known ; non-synonymous GL192844.1 samtools variation 931126 931126 . . . alleles " C T"; frequencies " 0.735632183908046 0.264367816091954"; depth 87 ; known ; synonymous GL192844.1 samtools variation 935655 935655 . . . alleles " A G"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; N/A GL192844.1 samtools variation 941507 941507 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 58 ; unknown ; non-synonymous GL192844.1 samtools variation 941546 941546 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 66 ; unknown ; non-synonymous GL192844.1 samtools variation 941663 941663 . . . alleles " C T"; frequencies " 0.783132530120482 0.216867469879518"; depth 83 ; unknown ; synonymous GL192844.1 samtools variation 948763 948763 . . . alleles " A G"; frequencies " 0.479452054794521 0.520547945205479"; depth 73 ; unknown ; synonymous GL192844.1 samtools variation 951297 951297 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192844.1 samtools variation 951747 951747 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192844.1 samtools variation 952249 952249 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192844.1 samtools variation 976280 976280 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192844.1 samtools variation 976900 976900 . . . alleles " C T"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192844.1 samtools variation 980539 980539 . . . alleles " A G"; frequencies " 0.775401069518717 0.224598930481283"; depth 374 ; unknown ; N/A GL192844.1 samtools variation 980777 980777 . . . alleles " T C"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; known ; N/A GL192844.1 samtools variation 981042 981042 . . . alleles " T C"; frequencies " 0.255813953488372 0.744186046511628"; depth 43 ; known ; N/A GL192844.1 samtools variation 981773 981773 . . . alleles " A G"; frequencies " 0.380281690140845 0.605633802816901"; depth 71 ; known ; N/A GL192844.1 samtools variation 982323 982323 . . . alleles " A G"; frequencies " 0.504761904761905 0.495238095238095"; depth 210 ; known ; synonymous GL192844.1 samtools variation 983297 983297 . . . alleles " A G"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; known ; N/A GL192844.1 samtools variation 983357 983357 . . . alleles " G A"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; known ; N/A GL192844.1 samtools variation 983413 983413 . . . alleles " T C"; frequencies " 0.241379310344828 0.758620689655172"; depth 29 ; known ; N/A GL192844.1 samtools variation 983958 983958 . . . alleles " A G"; frequencies " 0.506849315068493 0.493150684931507"; depth 73 ; known ; synonymous GL192844.1 samtools variation 984039 984039 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 252 ; known ; synonymous GL192844.1 samtools variation 986443 986443 . . . alleles " T C"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL192844.1 samtools variation 990039 990039 . . . alleles " G A"; frequencies " 0.232876712328767 0.767123287671233"; depth 73 ; known ; synonymous GL192844.1 samtools variation 998397 998397 . . . alleles " C T"; frequencies " 0.79874213836478 0.20125786163522"; depth 2862 ; known ; N/A GL192844.1 samtools variation 999163 999163 . . . alleles " C T"; frequencies " 0.58252427184466 0.41747572815534"; depth 103 ; known ; N/A GL192844.1 samtools variation 999196 999196 . . . alleles " T C"; frequencies " 0.779069767441861 0.22093023255814"; depth 86 ; unknown ; N/A GL192844.1 samtools variation 999999 999999 . . . alleles " T C"; frequencies " 0.231023102310231 0.768976897689769"; depth 303 ; known ; N/A GL192844.1 samtools variation 1008688 1008688 . . . alleles " A G"; frequencies " 0.703125 0.296875"; depth 64 ; known ; N/A GL192844.1 samtools variation 1009541 1009541 . . . alleles " G A"; frequencies " 0.767441860465116 0.232558139534884"; depth 86 ; unknown ; N/A GL192844.1 samtools variation 1011003 1011003 . . . alleles " T C"; frequencies " 0.239583333333333 0.760416666666667"; depth 96 ; known ; N/A GL192844.1 samtools variation 1012999 1012999 . . . alleles " G A"; frequencies " 0.736979166666667 0.263020833333333"; depth 2688 ; unknown ; N/A GL192844.1 samtools variation 1016108 1016108 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192844.1 samtools variation 1023369 1023369 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192844.1 samtools variation 1024679 1024679 . . . alleles " T A"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; known ; N/A GL192844.1 samtools variation 1038738 1038738 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192844.1 samtools variation 1040407 1040407 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; synonymous GL192844.1 samtools variation 1043027 1043027 . . . alleles " T C"; frequencies " 0.673076923076923 0.326923076923077"; depth 52 ; unknown ; synonymous GL192844.1 samtools variation 1043231 1043231 . . . alleles " C G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; synonymous GL192844.1 samtools variation 1043425 1043425 . . . alleles " C A"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; N/A GL192844.1 samtools variation 1043688 1043688 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 60 ; unknown ; N/A GL192844.1 samtools variation 1044024 1044024 . . . alleles " C G"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; unknown ; N/A GL192844.1 samtools variation 1044099 1044099 . . . alleles " G A"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL192844.1 samtools variation 1097537 1097537 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192844.1 samtools variation 1164478 1164478 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL192844.1 samtools variation 1168937 1168937 . . . alleles " A C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192844.1 samtools variation 1176990 1176990 . . . alleles " C T"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192844.1 samtools variation 1199910 1199910 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192844.1 samtools variation 1204567 1204567 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192844.1 samtools variation 1291076 1291076 . . . alleles " T C"; frequencies " 0.367647058823529 0.632352941176471"; depth 68 ; known ; N/A GL192844.1 samtools variation 1291158 1291158 . . . alleles " C T"; frequencies " 0.406779661016949 0.593220338983051"; depth 177 ; known ; N/A GL192844.1 samtools variation 1293498 1293498 . . . alleles " T A"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192844.1 samtools variation 1294676 1294676 . . . alleles " G A"; frequencies " 0.534562211981567 0.465437788018433"; depth 217 ; unknown ; non-synonymous GL192844.1 samtools variation 1307677 1307677 . . . alleles " C T"; frequencies " 0.364532019704433 0.635467980295567"; depth 203 ; known ; synonymous GL192844.1 samtools variation 1321603 1321603 . . . alleles " G C"; frequencies " 0.458333333333333 0.541666666666667"; depth 48 ; known ; N/A GL192845.1 samtools variation 53489 53489 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192845.1 samtools variation 143399 143399 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL192845.1 samtools variation 162368 162368 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192846.1 samtools variation 140563 140563 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192846.1 samtools variation 168239 168239 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 40 ; known ; N/A GL192846.1 samtools variation 168564 168564 . . . alleles " G A"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192846.1 samtools variation 169036 169036 . . . alleles " A C"; frequencies " 0.689189189189189 0.310810810810811"; depth 74 ; known ; N/A GL192846.1 samtools variation 508801 508801 . . . alleles " A G"; frequencies " 0.592592592592593 0.407407407407407"; depth 81 ; unknown ; non-synonymous GL192846.1 samtools variation 652202 652202 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; synonymous GL192846.1 samtools variation 675876 675876 . . . alleles " A G"; frequencies " 0.527777777777778 0.472222222222222"; depth 72 ; known ; N/A GL192846.1 samtools variation 974648 974648 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192846.1 samtools variation 1043720 1043720 . . . alleles " C T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; synonymous GL192846.1 samtools variation 1056674 1056674 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL192846.1 samtools variation 1057121 1057121 . . . alleles " T C"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; known ; N/A GL192847.1 samtools variation 54637 54637 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192847.1 samtools variation 55029 55029 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192847.1 samtools variation 155685 155685 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192847.1 samtools variation 158285 158285 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192847.1 samtools variation 158773 158773 . . . alleles " G A"; frequencies " 0.586092715231788 0.413907284768212"; depth 302 ; unknown ; synonymous GL192847.1 samtools variation 158829 158829 . . . alleles " C T"; frequencies " 0.540983606557377 0.459016393442623"; depth 244 ; unknown ; non-synonymous GL192847.1 samtools variation 164703 164703 . . . alleles " A G"; frequencies " 0.554585152838428 0.445414847161572"; depth 229 ; unknown ; synonymous GL192847.1 samtools variation 165669 165669 . . . alleles " G A"; frequencies " 0.548780487804878 0.447154471544715"; depth 246 ; unknown ; synonymous GL192847.1 samtools variation 193219 193219 . . . alleles " C T"; frequencies " 0.644444444444444 0.355555555555556"; depth 45 ; unknown ; non-synonymous GL192847.1 samtools variation 199336 199336 . . . alleles " C T"; frequencies " 0.47565543071161 0.524344569288389"; depth 267 ; unknown ; non-synonymous GL192847.1 samtools variation 254312 254312 . . . alleles " G C"; frequencies " 0.710743801652893 0.289256198347107"; depth 121 ; unknown ; N/A GL192847.1 samtools variation 254370 254370 . . . alleles " A C"; frequencies " 0.670588235294118 0.329411764705882"; depth 85 ; unknown ; N/A GL192847.1 samtools variation 254412 254412 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 57 ; unknown ; N/A GL192847.1 samtools variation 254982 254982 . . . alleles " C T"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; non-synonymous GL192847.1 samtools variation 258221 258221 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 25 ; unknown ; non-synonymous GL192847.1 samtools variation 532557 532557 . . . alleles " G T"; frequencies " 0.285714285714286 0.714285714285714"; depth 35 ; unknown ; non-synonymous GL192847.1 samtools variation 543874 543874 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192847.1 samtools variation 588473 588473 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192847.1 samtools variation 622327 622327 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 55 ; unknown ; non-synonymous GL192847.1 samtools variation 1078041 1078041 . . . alleles " G A"; frequencies " 0.748201438848921 0.251798561151079"; depth 139 ; unknown ; N/A GL192847.1 samtools variation 1300163 1300163 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192847.1 samtools variation 1300210 1300210 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192847.1 samtools variation 1301790 1301790 . . . alleles " A C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192847.1 samtools variation 1303215 1303215 . . . alleles " A C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192847.1 samtools variation 1303218 1303218 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192847.1 samtools variation 1308725 1308725 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 54 ; unknown ; N/A GL192848.1 samtools variation 753401 753401 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; synonymous GL192848.1 samtools variation 797883 797883 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; synonymous GL192849.1 samtools variation 909687 909687 . . . alleles " C A"; frequencies " 0.463768115942029 0.536231884057971"; depth 69 ; known ; N/A GL192849.1 samtools variation 914497 914497 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192849.1 samtools variation 914518 914518 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192849.1 samtools variation 916076 916076 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192849.1 samtools variation 928259 928259 . . . alleles " A G"; frequencies " 0.413793103448276 0.586206896551724"; depth 116 ; known ; synonymous GL192849.1 samtools variation 928328 928328 . . . alleles " G A"; frequencies " 0.596899224806202 0.403100775193798"; depth 129 ; known ; synonymous GL192850.1 samtools variation 512217 512217 . . . alleles " C T"; frequencies " 0.403940886699507 0.596059113300493"; depth 406 ; known ; N/A GL192850.1 samtools variation 512578 512578 . . . alleles " C G"; frequencies " 0.654135338345865 0.345864661654135"; depth 266 ; unknown ; N/A GL192850.1 samtools variation 512579 512579 . . . alleles " T G"; frequencies " 0.642023346303502 0.357976653696498"; depth 257 ; unknown ; N/A GL192850.1 samtools variation 512638 512638 . . . alleles " A G"; frequencies " 0.419689119170984 0.580310880829015"; depth 193 ; known ; N/A GL192850.1 samtools variation 513881 513881 . . . alleles " A C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192850.1 samtools variation 516839 516839 . . . alleles " T C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192850.1 samtools variation 519625 519625 . . . alleles " C G"; frequencies " 0.552511415525114 0.447488584474886"; depth 219 ; unknown ; synonymous GL192850.1 samtools variation 702716 702716 . . . alleles " A G"; frequencies " 0.542857142857143 0.457142857142857"; depth 70 ; unknown ; synonymous GL192850.1 samtools variation 810957 810957 . . . alleles " G A"; frequencies " 0.57258064516129 0.42741935483871"; depth 124 ; unknown ; N/A GL192850.1 samtools variation 811362 811362 . . . alleles " A T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192850.1 samtools variation 812799 812799 . . . alleles " C G"; frequencies " 0.658823529411765 0.341176470588235"; depth 85 ; unknown ; synonymous GL192850.1 samtools variation 818565 818565 . . . alleles " G A"; frequencies " 0.509803921568627 0.490196078431373"; depth 102 ; unknown ; synonymous GL192850.1 samtools variation 818919 818919 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; synonymous GL192850.1 samtools variation 856683 856683 . . . alleles " C T"; frequencies " 0.50179211469534 0.498207885304659"; depth 279 ; unknown ; N/A GL192850.1 samtools variation 856748 856748 . . . alleles " T C"; frequencies " 0.768421052631579 0.226315789473684"; depth 190 ; known ; synonymous GL192850.1 samtools variation 898667 898667 . . . alleles " C T"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL192850.1 samtools variation 931379 931379 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; synonymous GL192850.1 samtools variation 1007212 1007212 . . . alleles " T C"; frequencies " 0.486486486486487 0.513513513513513"; depth 74 ; unknown ; N/A GL192850.1 samtools variation 1046576 1046576 . . . alleles " G A"; frequencies " 0.651515151515151 0.348484848484849"; depth 66 ; unknown ; non-synonymous GL192851.1 samtools variation 108140 108140 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192851.1 samtools variation 108927 108927 . . . alleles " C A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192851.1 samtools variation 108939 108939 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL192851.1 samtools variation 109503 109503 . . . alleles " C T"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; known ; N/A GL192851.1 samtools variation 124275 124275 . . . alleles " C T"; frequencies " 0.62962962962963 0.37037037037037"; depth 54 ; known ; synonymous GL192851.1 samtools variation 530597 530597 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL192851.1 samtools variation 531908 531908 . . . alleles " G A"; frequencies " 0.701492537313433 0.298507462686567"; depth 67 ; unknown ; N/A GL192851.1 samtools variation 551103 551103 . . . alleles " A G"; frequencies " 0.735849056603774 0.264150943396226"; depth 106 ; unknown ; synonymous GL192851.1 samtools variation 578624 578624 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; known ; non-synonymous GL192851.1 samtools variation 604301 604301 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 16 ; unknown ; synonymous GL192851.1 samtools variation 764393 764393 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; non-synonymous GL192851.1 samtools variation 812444 812444 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; synonymous GL192852.1 samtools variation 50376 50376 . . . alleles " T A"; frequencies " 0.552631578947368 0.43859649122807"; depth 114 ; unknown ; synonymous GL192852.1 samtools variation 72612 72612 . . . alleles " C T"; frequencies " 0.776859504132231 0.223140495867769"; depth 242 ; unknown ; non-synonymous GL192852.1 samtools variation 80368 80368 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192852.1 samtools variation 83315 83315 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 58 ; unknown ; N/A GL192852.1 samtools variation 104038 104038 . . . alleles " T C"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL192852.1 samtools variation 104303 104303 . . . alleles " G C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192852.1 samtools variation 105857 105857 . . . alleles " A T"; frequencies " 0.426829268292683 0.573170731707317"; depth 82 ; known ; N/A GL192852.1 samtools variation 356412 356412 . . . alleles " T A"; frequencies " 0.366863905325444 0.633136094674556"; depth 169 ; known ; N/A GL192852.1 samtools variation 358310 358310 . . . alleles " T C"; frequencies " 0.342592592592593 0.657407407407407"; depth 108 ; known ; N/A GL192852.1 samtools variation 358490 358490 . . . alleles " C T"; frequencies " 0.580152671755725 0.419847328244275"; depth 131 ; known ; N/A GL192852.1 samtools variation 358724 358724 . . . alleles " C T"; frequencies " 0.698630136986301 0.301369863013699"; depth 146 ; unknown ; N/A GL192852.1 samtools variation 358957 358957 . . . alleles " G C"; frequencies " 0.579545454545455 0.420454545454545"; depth 88 ; known ; N/A GL192852.1 samtools variation 359275 359275 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 308 ; known ; N/A GL192852.1 samtools variation 359510 359510 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 336 ; known ; N/A GL192852.1 samtools variation 359560 359560 . . . alleles " C T"; frequencies " 0.622377622377622 0.377622377622378"; depth 572 ; known ; N/A GL192852.1 samtools variation 359682 359682 . . . alleles " C T"; frequencies " 0.728215767634855 0.271784232365145"; depth 482 ; known ; N/A GL192852.1 samtools variation 378045 378045 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192852.1 samtools variation 381835 381835 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; N/A GL192852.1 samtools variation 419101 419101 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192852.1 samtools variation 419233 419233 . . . alleles " G T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192852.1 samtools variation 996360 996360 . . . alleles " A G"; frequencies " 0.282051282051282 0.717948717948718"; depth 156 ; known ; N/A GL192852.1 samtools variation 1007701 1007701 . . . alleles " T G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL192852.1 samtools variation 1007714 1007714 . . . alleles " A C"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL192852.1 samtools variation 1008767 1008767 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192852.1 samtools variation 1049022 1049022 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192854.1 samtools variation 334375 334375 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL192854.1 samtools variation 334672 334672 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192854.1 samtools variation 663598 663598 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; synonymous GL192854.1 samtools variation 713572 713572 . . . alleles " G C"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL192854.1 samtools variation 716346 716346 . . . alleles " T C"; frequencies " 0.657534246575342 0.342465753424658"; depth 73 ; known ; N/A GL192854.1 samtools variation 743856 743856 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192854.1 samtools variation 860741 860741 . . . alleles " T C"; frequencies " 0.479452054794521 0.520547945205479"; depth 73 ; known ; N/A GL192854.1 samtools variation 877614 877614 . . . alleles " G A"; frequencies " 0.744230769230769 0.255769230769231"; depth 520 ; unknown ; N/A GL192854.1 samtools variation 880034 880034 . . . alleles " G A"; frequencies " 0.385467980295567 0.614532019704433"; depth 812 ; known ; synonymous GL192854.1 samtools variation 883106 883106 . . . alleles " C A"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; known ; N/A GL192854.1 samtools variation 1176800 1176800 . . . alleles " C T"; frequencies " 0.718253968253968 0.281746031746032"; depth 252 ; unknown ; N/A GL192855.1 samtools variation 1117353 1117353 . . . alleles " G T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192855.1 samtools variation 1121068 1121068 . . . alleles " C T"; frequencies " 0.798387096774194 0.201612903225806"; depth 124 ; known ; N/A GL192855.1 samtools variation 1121111 1121111 . . . alleles " C T"; frequencies " 0.715328467153285 0.284671532846715"; depth 137 ; known ; N/A GL192855.1 samtools variation 1121298 1121298 . . . alleles " T G"; frequencies " 0.769230769230769 0.230769230769231"; depth 104 ; known ; N/A GL192855.1 samtools variation 1122814 1122814 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; known ; N/A GL192855.1 samtools variation 1123145 1123145 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; unknown ; synonymous GL192855.1 samtools variation 1123186 1123186 . . . alleles " T A"; frequencies " 0.225 0.775"; depth 40 ; known ; non-synonymous GL192855.1 samtools variation 1133448 1133448 . . . alleles " A G"; frequencies " 0.742424242424242 0.257575757575758"; depth 66 ; known ; non-synonymous GL192855.1 samtools variation 1138316 1138316 . . . alleles " G A"; frequencies " 0.555956678700361 0.444043321299639"; depth 277 ; unknown ; N/A GL192855.1 samtools variation 1138794 1138794 . . . alleles " T C"; frequencies " 0.595238095238095 0.404761904761905"; depth 126 ; unknown ; N/A GL192855.1 samtools variation 1139887 1139887 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192855.1 samtools variation 1140066 1140066 . . . alleles " G T"; frequencies " 0.795275590551181 0.204724409448819"; depth 381 ; unknown ; synonymous GL192855.1 samtools variation 1140170 1140170 . . . alleles " C T"; frequencies " 0.609677419354839 0.390322580645161"; depth 310 ; unknown ; non-synonymous GL192855.1 samtools variation 1140860 1140860 . . . alleles " C G"; frequencies " 0.682926829268293 0.317073170731707"; depth 82 ; unknown ; N/A GL192855.1 samtools variation 1146553 1146553 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192855.1 samtools variation 1146947 1146947 . . . alleles " A C"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192855.1 samtools variation 1147945 1147945 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192855.1 samtools variation 1148247 1148247 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192855.1 samtools variation 1148343 1148343 . . . alleles " T A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192855.1 samtools variation 1148354 1148354 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192855.1 samtools variation 1149077 1149077 . . . alleles " G A"; frequencies " 0.572649572649573 0.427350427350427"; depth 468 ; unknown ; synonymous GL192855.1 samtools variation 1150755 1150755 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192855.1 samtools variation 1150817 1150817 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192855.1 samtools variation 1151413 1151413 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 55 ; unknown ; N/A GL192855.1 samtools variation 1151547 1151547 . . . alleles " C T"; frequencies " 0.446808510638298 0.553191489361702"; depth 47 ; unknown ; N/A GL192855.1 samtools variation 1152154 1152154 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 33 ; unknown ; N/A GL192855.1 samtools variation 1152823 1152823 . . . alleles " G A"; frequencies " 0.413173652694611 0.586826347305389"; depth 167 ; unknown ; non-synonymous GL192855.1 samtools variation 1152850 1152850 . . . alleles " G A"; frequencies " 0.675105485232067 0.324894514767932"; depth 237 ; unknown ; non-synonymous GL192855.1 samtools variation 1152885 1152885 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 40 ; unknown ; N/A GL192855.1 samtools variation 1154238 1154238 . . . alleles " C T"; frequencies " 0.577777777777778 0.422222222222222"; depth 90 ; unknown ; synonymous GL192855.1 samtools variation 1154457 1154457 . . . alleles " G A"; frequencies " 0.703883495145631 0.296116504854369"; depth 206 ; unknown ; synonymous GL192855.1 samtools variation 1157350 1157350 . . . alleles " C T"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; unknown ; N/A GL192856.1 samtools variation 1121489 1121489 . . . alleles " C T"; frequencies " 0.34375 0.65625"; depth 32 ; unknown ; N/A GL192857.1 samtools variation 1025260 1025260 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192857.1 samtools variation 1025498 1025498 . . . alleles " G A"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL192857.1 samtools variation 1031847 1031847 . . . alleles " G A"; frequencies " 0.525462962962963 0.474537037037037"; depth 432 ; unknown ; N/A GL192857.1 samtools variation 1035249 1035249 . . . alleles " T G"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192857.1 samtools variation 1039156 1039156 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192857.1 samtools variation 1042711 1042711 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192857.1 samtools variation 1042789 1042789 . . . alleles " A C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192857.1 samtools variation 1043294 1043294 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192857.1 samtools variation 1043645 1043645 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192857.1 samtools variation 1044013 1044013 . . . alleles " G A"; frequencies " 0.506903353057199 0.493096646942801"; depth 507 ; unknown ; synonymous GL192857.1 samtools variation 1044157 1044157 . . . alleles " A C"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; known ; N/A GL192857.1 samtools variation 1046734 1046734 . . . alleles " C G"; frequencies " 0.642857142857143 0.285714285714286"; depth 14 ; unknown ; N/A GL192857.1 samtools variation 1047523 1047523 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192857.1 samtools variation 1049922 1049922 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192857.1 samtools variation 1050216 1050216 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192857.1 samtools variation 1050451 1050451 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192857.1 samtools variation 1070851 1070851 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192857.1 samtools variation 1072493 1072493 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192857.1 samtools variation 1075030 1075030 . . . alleles " G A"; frequencies " 0.616438356164384 0.383561643835616"; depth 73 ; unknown ; non-synonymous GL192857.1 samtools variation 1096695 1096695 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192857.1 samtools variation 1098781 1098781 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL192857.1 samtools variation 1101104 1101104 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192857.1 samtools variation 1101136 1101136 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192857.1 samtools variation 1107347 1107347 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; unknown ; N/A GL192857.1 samtools variation 1108769 1108769 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192857.1 samtools variation 1110188 1110188 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192857.1 samtools variation 1114746 1114746 . . . alleles " C T"; frequencies " 0.40625 0.59375"; depth 32 ; unknown ; N/A GL192857.1 samtools variation 1116164 1116164 . . . alleles " C T"; frequencies " 0.315789473684211 0.684210526315789"; depth 38 ; unknown ; N/A GL192857.1 samtools variation 1116392 1116392 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192857.1 samtools variation 1116590 1116590 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL192857.1 samtools variation 1150761 1150761 . . . alleles " G A"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL192857.1 samtools variation 1168674 1168674 . . . alleles " G A"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192857.1 samtools variation 1168710 1168710 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL192857.1 samtools variation 1168721 1168721 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL192857.1 samtools variation 1169785 1169785 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192857.1 samtools variation 1169819 1169819 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192858.1 samtools variation 550831 550831 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192858.1 samtools variation 551326 551326 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192858.1 samtools variation 551499 551499 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192858.1 samtools variation 551625 551625 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 88 ; unknown ; N/A GL192858.1 samtools variation 635814 635814 . . . alleles " A T"; frequencies " 0.388888888888889 0.611111111111111"; depth 72 ; unknown ; synonymous GL192858.1 samtools variation 696283 696283 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192858.1 samtools variation 699094 699094 . . . alleles " A G"; frequencies " 0.753246753246753 0.246753246753247"; depth 154 ; unknown ; synonymous GL192858.1 samtools variation 879698 879698 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; synonymous GL192858.1 samtools variation 894793 894793 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 40 ; unknown ; N/A GL192858.1 samtools variation 894937 894937 . . . alleles " A G"; frequencies " 0.595744680851064 0.404255319148936"; depth 47 ; unknown ; N/A GL192858.1 samtools variation 896361 896361 . . . alleles " T A"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL192858.1 samtools variation 897097 897097 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192858.1 samtools variation 898326 898326 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192858.1 samtools variation 898766 898766 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 57 ; unknown ; N/A GL192859.1 samtools variation 711201 711201 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 40 ; unknown ; N/A GL192859.1 samtools variation 711368 711368 . . . alleles " A T"; frequencies " 0.660919540229885 0.339080459770115"; depth 174 ; unknown ; N/A GL192859.1 samtools variation 739438 739438 . . . alleles " T C"; frequencies " 0.761290322580645 0.238709677419355"; depth 155 ; unknown ; N/A GL192859.1 samtools variation 1060130 1060130 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; N/A GL192859.1 samtools variation 1060485 1060485 . . . alleles " A G"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL192860.1 samtools variation 388588 388588 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192860.1 samtools variation 400157 400157 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; non-synonymous GL192860.1 samtools variation 597807 597807 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 20 ; known ; N/A GL192860.1 samtools variation 601113 601113 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192860.1 samtools variation 601828 601828 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192860.1 samtools variation 744477 744477 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL192860.1 samtools variation 860965 860965 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192860.1 samtools variation 870668 870668 . . . alleles " A C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192860.1 samtools variation 870797 870797 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192860.1 samtools variation 871825 871825 . . . alleles " C T"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL192860.1 samtools variation 871826 871826 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL192860.1 samtools variation 878482 878482 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192860.1 samtools variation 884251 884251 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192860.1 samtools variation 888064 888064 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192860.1 samtools variation 888989 888989 . . . alleles " T G"; frequencies " 0.604651162790698 0.395348837209302"; depth 43 ; unknown ; N/A GL192860.1 samtools variation 889628 889628 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192860.1 samtools variation 889715 889715 . . . alleles " A C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192860.1 samtools variation 890370 890370 . . . alleles " C A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192860.1 samtools variation 894909 894909 . . . alleles " T G"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; unknown ; N/A GL192860.1 samtools variation 897997 897997 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL192860.1 samtools variation 901703 901703 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL192860.1 samtools variation 902156 902156 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL192860.1 samtools variation 912063 912063 . . . alleles " T C"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192860.1 samtools variation 924735 924735 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192860.1 samtools variation 924795 924795 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192860.1 samtools variation 948480 948480 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192860.1 samtools variation 966577 966577 . . . alleles " T G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192860.1 samtools variation 967117 967117 . . . alleles " T C"; frequencies " 0.509090909090909 0.490909090909091"; depth 55 ; unknown ; N/A GL192860.1 samtools variation 967138 967138 . . . alleles " A T"; frequencies " 0.40625 0.5625"; depth 32 ; unknown ; N/A GL192860.1 samtools variation 967292 967292 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192860.1 samtools variation 967439 967439 . . . alleles " G T"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192860.1 samtools variation 967527 967527 . . . alleles " G C"; frequencies " 0.595744680851064 0.404255319148936"; depth 47 ; unknown ; N/A GL192860.1 samtools variation 967583 967583 . . . alleles " C A"; frequencies " 0.673913043478261 0.326086956521739"; depth 46 ; unknown ; N/A GL192860.1 samtools variation 967814 967814 . . . alleles " T G"; frequencies " 0.418181818181818 0.581818181818182"; depth 55 ; unknown ; N/A GL192860.1 samtools variation 968084 968084 . . . alleles " A G"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; unknown ; N/A GL192860.1 samtools variation 968640 968640 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192860.1 samtools variation 969243 969243 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192860.1 samtools variation 981984 981984 . . . alleles " T A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192860.1 samtools variation 989739 989739 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192860.1 samtools variation 992040 992040 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192860.1 samtools variation 1002330 1002330 . . . alleles " A T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; known ; N/A GL192860.1 samtools variation 1012880 1012880 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192860.1 samtools variation 1014809 1014809 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192860.1 samtools variation 1016287 1016287 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 25 ; known ; N/A GL192860.1 samtools variation 1016319 1016319 . . . alleles " A C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192860.1 samtools variation 1017326 1017326 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192860.1 samtools variation 1017341 1017341 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192860.1 samtools variation 1017400 1017400 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192860.1 samtools variation 1017723 1017723 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; unknown ; N/A GL192860.1 samtools variation 1017832 1017832 . . . alleles " A G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192860.1 samtools variation 1019105 1019105 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192860.1 samtools variation 1029487 1029487 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 39 ; known ; N/A GL192860.1 samtools variation 1030372 1030372 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192860.1 samtools variation 1036942 1036942 . . . alleles " A C"; frequencies " 0.204545454545455 0.795454545454545"; depth 44 ; known ; N/A GL192860.1 samtools variation 1039245 1039245 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 55 ; unknown ; N/A GL192860.1 samtools variation 1040444 1040444 . . . alleles " A C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192860.1 samtools variation 1049091 1049091 . . . alleles " C T"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; N/A GL192860.1 samtools variation 1056451 1056451 . . . alleles " T A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192860.1 samtools variation 1056535 1056535 . . . alleles " A T"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL192860.1 samtools variation 1087805 1087805 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192860.1 samtools variation 1089852 1089852 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192860.1 samtools variation 1091159 1091159 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL192860.1 samtools variation 1091841 1091841 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192860.1 samtools variation 1102774 1102774 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL192860.1 samtools variation 1102940 1102940 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 51 ; known ; N/A GL192860.1 samtools variation 1107309 1107309 . . . alleles " T A"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL192860.1 samtools variation 1107430 1107430 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL192860.1 samtools variation 1116628 1116628 . . . alleles " C T"; frequencies " 0.521575984990619 0.478424015009381"; depth 533 ; known ; N/A GL192860.1 samtools variation 1116650 1116650 . . . alleles " T C"; frequencies " 0.556581986143187 0.443418013856813"; depth 433 ; known ; N/A GL192860.1 samtools variation 1117127 1117127 . . . alleles " T C"; frequencies " 0.490950226244344 0.509049773755656"; depth 884 ; known ; N/A GL192860.1 samtools variation 1117337 1117337 . . . alleles " T C"; frequencies " 0.388489208633094 0.611510791366906"; depth 139 ; known ; N/A GL192860.1 samtools variation 1117946 1117946 . . . alleles " A C"; frequencies " 0.617021276595745 0.382978723404255"; depth 47 ; known ; N/A GL192860.1 samtools variation 1118147 1118147 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192860.1 samtools variation 1118501 1118501 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192860.1 samtools variation 1118570 1118570 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL192860.1 samtools variation 1119089 1119089 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192860.1 samtools variation 1120162 1120162 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL192860.1 samtools variation 1121300 1121300 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL192860.1 samtools variation 1122310 1122310 . . . alleles " G T"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL192860.1 samtools variation 1122392 1122392 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL192860.1 samtools variation 1124147 1124147 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192860.1 samtools variation 1129177 1129177 . . . alleles " C T"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL192860.1 samtools variation 1220353 1220353 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 56 ; known ; N/A GL192860.1 samtools variation 1220503 1220503 . . . alleles " G A"; frequencies " 0.686046511627907 0.313953488372093"; depth 86 ; known ; N/A GL192860.1 samtools variation 1220710 1220710 . . . alleles " G A"; frequencies " 0.507177033492823 0.492822966507177"; depth 209 ; known ; N/A GL192860.1 samtools variation 1226289 1226289 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192860.1 samtools variation 1277036 1277036 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192861.1 samtools variation 110616 110616 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192861.1 samtools variation 150771 150771 . . . alleles " C T"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; known ; N/A GL192861.1 samtools variation 154985 154985 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 207 ; known ; N/A GL192861.1 samtools variation 155428 155428 . . . alleles " A G"; frequencies " 0.569230769230769 0.430769230769231"; depth 130 ; unknown ; N/A GL192861.1 samtools variation 158451 158451 . . . alleles " G T"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; known ; N/A GL192861.1 samtools variation 197140 197140 . . . alleles " A G"; frequencies " 0.295081967213115 0.704918032786885"; depth 244 ; known ; synonymous GL192861.1 samtools variation 198377 198377 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192861.1 samtools variation 200449 200449 . . . alleles " A C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192861.1 samtools variation 201359 201359 . . . alleles " G A"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL192861.1 samtools variation 201751 201751 . . . alleles " G C"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; unknown ; N/A GL192861.1 samtools variation 202635 202635 . . . alleles " G A"; frequencies " 0.695205479452055 0.304794520547945"; depth 292 ; known ; synonymous GL192861.1 samtools variation 203017 203017 . . . alleles " C T"; frequencies " 0.767295597484277 0.232704402515723"; depth 159 ; unknown ; synonymous GL192861.1 samtools variation 205615 205615 . . . alleles " T G"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192861.1 samtools variation 205950 205950 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192861.1 samtools variation 207838 207838 . . . alleles " A G"; frequencies " 0.527272727272727 0.472727272727273"; depth 55 ; unknown ; N/A GL192861.1 samtools variation 209215 209215 . . . alleles " T G"; frequencies " 0.388888888888889 0.611111111111111"; depth 72 ; known ; N/A GL192861.1 samtools variation 209381 209381 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 48 ; unknown ; N/A GL192861.1 samtools variation 209591 209591 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192861.1 samtools variation 209996 209996 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192861.1 samtools variation 210673 210673 . . . alleles " C T"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL192861.1 samtools variation 212964 212964 . . . alleles " T C"; frequencies " 0.413333333333333 0.586666666666667"; depth 75 ; known ; N/A GL192861.1 samtools variation 214944 214944 . . . alleles " T C"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL192861.1 samtools variation 218012 218012 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192861.1 samtools variation 239410 239410 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192861.1 samtools variation 240819 240819 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192861.1 samtools variation 252748 252748 . . . alleles " G A"; frequencies " 0.341463414634146 0.658536585365854"; depth 41 ; known ; N/A GL192861.1 samtools variation 252977 252977 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192861.1 samtools variation 257648 257648 . . . alleles " G C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192861.1 samtools variation 262431 262431 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192861.1 samtools variation 262435 262435 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192861.1 samtools variation 267470 267470 . . . alleles " G T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192861.1 samtools variation 275488 275488 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192861.1 samtools variation 295270 295270 . . . alleles " G A"; frequencies " 0.786666666666667 0.213333333333333"; depth 75 ; unknown ; synonymous GL192861.1 samtools variation 325817 325817 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL192861.1 samtools variation 325896 325896 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL192861.1 samtools variation 325912 325912 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL192861.1 samtools variation 326120 326120 . . . alleles " G A"; frequencies " 0.56140350877193 0.43859649122807"; depth 114 ; known ; N/A GL192861.1 samtools variation 766585 766585 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192861.1 samtools variation 914217 914217 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192862.1 samtools variation 258721 258721 . . . alleles " C T"; frequencies " 0.597014925373134 0.402985074626866"; depth 67 ; known ; synonymous GL192862.1 samtools variation 262115 262115 . . . alleles " T G"; frequencies " 0.256410256410256 0.743589743589744"; depth 39 ; known ; synonymous GL192862.1 samtools variation 263030 263030 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 34 ; unknown ; non-synonymous GL192862.1 samtools variation 268994 268994 . . . alleles " T C"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; known ; non-synonymous GL192862.1 samtools variation 278033 278033 . . . alleles " G T"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL192862.1 samtools variation 285856 285856 . . . alleles " G A"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; known ; N/A GL192862.1 samtools variation 321066 321066 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL192862.1 samtools variation 321257 321257 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192862.1 samtools variation 321404 321404 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL192862.1 samtools variation 321528 321528 . . . alleles " G T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL192862.1 samtools variation 322001 322001 . . . alleles " G A"; frequencies " 0.3375 0.6625"; depth 80 ; unknown ; synonymous GL192862.1 samtools variation 323161 323161 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 36 ; unknown ; synonymous GL192862.1 samtools variation 324124 324124 . . . alleles " G A"; frequencies " 0.703125 0.296875"; depth 64 ; known ; synonymous GL192862.1 samtools variation 324869 324869 . . . alleles " G A"; frequencies " 0.53030303030303 0.46969696969697"; depth 66 ; unknown ; synonymous GL192862.1 samtools variation 346459 346459 . . . alleles " C T"; frequencies " 0.45 0.55"; depth 20 ; unknown ; synonymous GL192862.1 samtools variation 346528 346528 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192862.1 samtools variation 346723 346723 . . . alleles " G C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192862.1 samtools variation 373952 373952 . . . alleles " C A"; frequencies " 0.45 0.55"; depth 40 ; unknown ; N/A GL192862.1 samtools variation 375983 375983 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192862.1 samtools variation 375993 375993 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192862.1 samtools variation 385598 385598 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192862.1 samtools variation 401433 401433 . . . alleles " G A"; frequencies " 0.732142857142857 0.267857142857143"; depth 56 ; unknown ; non-synonymous GL192862.1 samtools variation 401453 401453 . . . alleles " G A"; frequencies " 0.676190476190476 0.323809523809524"; depth 105 ; unknown ; synonymous GL192862.1 samtools variation 414867 414867 . . . alleles " C T"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192862.1 samtools variation 431068 431068 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192862.1 samtools variation 437072 437072 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192862.1 samtools variation 445665 445665 . . . alleles " G A"; frequencies " 0.244367417677643 0.755632582322357"; depth 577 ; unknown ; non-synonymous GL192862.1 samtools variation 450334 450334 . . . alleles " G A"; frequencies " 0.488372093023256 0.511627906976744"; depth 258 ; unknown ; N/A GL192862.1 samtools variation 450520 450520 . . . alleles " G A"; frequencies " 0.284615384615385 0.715384615384615"; depth 390 ; unknown ; N/A GL192862.1 samtools variation 451448 451448 . . . alleles " G C"; frequencies " 0.395121951219512 0.604878048780488"; depth 205 ; unknown ; N/A GL192862.1 samtools variation 465536 465536 . . . alleles " C T"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL192862.1 samtools variation 467045 467045 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192862.1 samtools variation 706289 706289 . . . alleles " T C"; frequencies " 0.347826086956522 0.652173913043478"; depth 46 ; unknown ; synonymous GL192862.1 samtools variation 818573 818573 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; synonymous GL192862.1 samtools variation 867233 867233 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; synonymous GL192862.1 samtools variation 872549 872549 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192862.1 samtools variation 872919 872919 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192862.1 samtools variation 873728 873728 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192862.1 samtools variation 973604 973604 . . . alleles " A C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192862.1 samtools variation 979865 979865 . . . alleles " G A"; frequencies " 0.351515151515152 0.648484848484848"; depth 165 ; known ; N/A GL192862.1 samtools variation 980022 980022 . . . alleles " G A"; frequencies " 0.507692307692308 0.492307692307692"; depth 130 ; known ; N/A GL192862.1 samtools variation 983443 983443 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192862.1 samtools variation 991767 991767 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192862.1 samtools variation 995607 995607 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192862.1 samtools variation 1027921 1027921 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; unknown ; synonymous GL192862.1 samtools variation 1046987 1046987 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL192862.1 samtools variation 1047002 1047002 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; unknown ; N/A GL192862.1 samtools variation 1062561 1062561 . . . alleles " C T"; frequencies " 0.565789473684211 0.434210526315789"; depth 76 ; unknown ; non-synonymous GL192862.1 samtools variation 1063096 1063096 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; non-synonymous GL192862.1 samtools variation 1064302 1064302 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192862.1 samtools variation 1067389 1067389 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; synonymous GL192862.1 samtools variation 1077201 1077201 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192862.1 samtools variation 1078929 1078929 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192862.1 samtools variation 1086781 1086781 . . . alleles " G A"; frequencies " 0.605042016806723 0.394957983193277"; depth 119 ; unknown ; synonymous GL192862.1 samtools variation 1087206 1087206 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192862.1 samtools variation 1087398 1087398 . . . alleles " C G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192863.1 samtools variation 519311 519311 . . . alleles " A C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192863.1 samtools variation 656773 656773 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192863.1 samtools variation 1175901 1175901 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192863.1 samtools variation 1186245 1186245 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192863.1 samtools variation 1203823 1203823 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192863.1 samtools variation 1205170 1205170 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192864.1 samtools variation 883404 883404 . . . alleles " A G"; frequencies " 0.290322580645161 0.709677419354839"; depth 62 ; known ; N/A GL192865.1 samtools variation 374089 374089 . . . alleles " G A"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192865.1 samtools variation 376731 376731 . . . alleles " C T"; frequencies " 0.481012658227848 0.518987341772152"; depth 79 ; unknown ; N/A GL192865.1 samtools variation 379118 379118 . . . alleles " A G"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; known ; N/A GL192865.1 samtools variation 382937 382937 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; known ; synonymous GL192865.1 samtools variation 522131 522131 . . . alleles " T C"; frequencies " 0.36 0.64"; depth 25 ; known ; non-synonymous GL192869.1 samtools variation 941515 941515 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192869.1 samtools variation 1028083 1028083 . . . alleles " C A"; frequencies " 0.577777777777778 0.422222222222222"; depth 45 ; known ; N/A GL192869.1 samtools variation 1028204 1028204 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL192869.1 samtools variation 1030557 1030557 . . . alleles " A C"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL192869.1 samtools variation 1032035 1032035 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192869.1 samtools variation 1032667 1032667 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192869.1 samtools variation 1041186 1041186 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL192869.1 samtools variation 1041191 1041191 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL192869.1 samtools variation 1046403 1046403 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192869.1 samtools variation 1046589 1046589 . . . alleles " C G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192869.1 samtools variation 1052659 1052659 . . . alleles " A G"; frequencies " 0.287878787878788 0.712121212121212"; depth 66 ; known ; N/A GL192869.1 samtools variation 1052666 1052666 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 72 ; known ; N/A GL192869.1 samtools variation 1052756 1052756 . . . alleles " A G"; frequencies " 0.445454545454545 0.554545454545455"; depth 110 ; known ; N/A GL192869.1 samtools variation 1052988 1052988 . . . alleles " A G"; frequencies " 0.317919075144509 0.682080924855491"; depth 173 ; known ; N/A GL192869.1 samtools variation 1053119 1053119 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 60 ; known ; N/A GL192869.1 samtools variation 1053125 1053125 . . . alleles " T G"; frequencies " 0.430769230769231 0.569230769230769"; depth 65 ; known ; N/A GL192869.1 samtools variation 1053350 1053350 . . . alleles " A G"; frequencies " 0.683544303797468 0.316455696202532"; depth 79 ; known ; N/A GL192869.1 samtools variation 1053488 1053488 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 84 ; known ; synonymous GL192869.1 samtools variation 1075755 1075755 . . . alleles " T A"; frequencies " 0.445945945945946 0.554054054054054"; depth 74 ; known ; synonymous GL192869.1 samtools variation 1077070 1077070 . . . alleles " G A"; frequencies " 0.705128205128205 0.294871794871795"; depth 78 ; unknown ; synonymous GL192869.1 samtools variation 1100257 1100257 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL192869.1 samtools variation 1107208 1107208 . . . alleles " G C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL192869.1 samtools variation 1159634 1159634 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL192869.1 samtools variation 1176155 1176155 . . . alleles " C G"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; known ; N/A GL192869.1 samtools variation 1184740 1184740 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192869.1 samtools variation 1184847 1184847 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192869.1 samtools variation 1186319 1186319 . . . alleles " T G"; frequencies " 0.36734693877551 0.63265306122449"; depth 98 ; known ; N/A GL192869.1 samtools variation 1186479 1186479 . . . alleles " T C"; frequencies " 0.59375 0.40625"; depth 32 ; known ; N/A GL192869.1 samtools variation 1188657 1188657 . . . alleles " A G"; frequencies " 0.48936170212766 0.51063829787234"; depth 47 ; unknown ; N/A GL192869.1 samtools variation 1243940 1243940 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192870.1 samtools variation 43300 43300 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 51 ; unknown ; N/A GL192870.1 samtools variation 44482 44482 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; synonymous GL192870.1 samtools variation 194414 194414 . . . alleles " C T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL192870.1 samtools variation 206600 206600 . . . alleles " G T"; frequencies " 0.303630363036304 0.696369636963696"; depth 303 ; unknown ; N/A GL192870.1 samtools variation 324351 324351 . . . alleles " C T"; frequencies " 0.48 0.52"; depth 25 ; unknown ; synonymous GL192870.1 samtools variation 351562 351562 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192870.1 samtools variation 351677 351677 . . . alleles " C G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192870.1 samtools variation 351988 351988 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192870.1 samtools variation 352001 352001 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192870.1 samtools variation 376251 376251 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL192870.1 samtools variation 395376 395376 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192870.1 samtools variation 396315 396315 . . . alleles " C T"; frequencies " 0.702702702702703 0.297297297297297"; depth 148 ; unknown ; synonymous GL192870.1 samtools variation 454757 454757 . . . alleles " C T"; frequencies " 0.556962025316456 0.443037974683544"; depth 237 ; unknown ; synonymous GL192870.1 samtools variation 455908 455908 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192870.1 samtools variation 456028 456028 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL192870.1 samtools variation 457147 457147 . . . alleles " C T"; frequencies " 0.608695652173913 0.391304347826087"; depth 46 ; unknown ; N/A GL192870.1 samtools variation 459390 459390 . . . alleles " C G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192870.1 samtools variation 514875 514875 . . . alleles " G A"; frequencies " 0.54014598540146 0.45985401459854"; depth 137 ; unknown ; synonymous GL192870.1 samtools variation 518769 518769 . . . alleles " G T"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; unknown ; N/A GL192870.1 samtools variation 575000 575000 . . . alleles " G A"; frequencies " 0.471264367816092 0.528735632183908"; depth 87 ; unknown ; N/A GL192870.1 samtools variation 575977 575977 . . . alleles " A G"; frequencies " 0.728571428571429 0.271428571428571"; depth 70 ; unknown ; N/A GL192870.1 samtools variation 603554 603554 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192870.1 samtools variation 605303 605303 . . . alleles " A G"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; known ; N/A GL192870.1 samtools variation 610339 610339 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192870.1 samtools variation 614274 614274 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192870.1 samtools variation 615962 615962 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192870.1 samtools variation 640546 640546 . . . alleles " C A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; synonymous GL192870.1 samtools variation 750888 750888 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192870.1 samtools variation 751116 751116 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192870.1 samtools variation 859409 859409 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL192870.1 samtools variation 900479 900479 . . . alleles " C T"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL192870.1 samtools variation 900594 900594 . . . alleles " C T"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192870.1 samtools variation 900674 900674 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192870.1 samtools variation 903185 903185 . . . alleles " C G"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192870.1 samtools variation 907570 907570 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192870.1 samtools variation 913334 913334 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192870.1 samtools variation 913503 913503 . . . alleles " G T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192870.1 samtools variation 913534 913534 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192870.1 samtools variation 916426 916426 . . . alleles " A G"; frequencies " 0.45 0.55"; depth 60 ; unknown ; N/A GL192870.1 samtools variation 916831 916831 . . . alleles " C T"; frequencies " 0.577464788732394 0.422535211267606"; depth 71 ; unknown ; N/A GL192870.1 samtools variation 916861 916861 . . . alleles " A C"; frequencies " 0.647058823529412 0.352941176470588"; depth 68 ; unknown ; N/A GL192870.1 samtools variation 917418 917418 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 56 ; unknown ; N/A GL192870.1 samtools variation 917784 917784 . . . alleles " C T"; frequencies " 0.635135135135135 0.364864864864865"; depth 74 ; unknown ; synonymous GL192870.1 samtools variation 918418 918418 . . . alleles " T C"; frequencies " 0.601156069364162 0.398843930635838"; depth 346 ; unknown ; N/A GL192870.1 samtools variation 919572 919572 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 49 ; unknown ; N/A GL192870.1 samtools variation 919582 919582 . . . alleles " G A"; frequencies " 0.581818181818182 0.418181818181818"; depth 55 ; unknown ; N/A GL192870.1 samtools variation 920376 920376 . . . alleles " A G"; frequencies " 0.548872180451128 0.451127819548872"; depth 133 ; unknown ; synonymous GL192870.1 samtools variation 921176 921176 . . . alleles " A G"; frequencies " 0.678111587982833 0.321888412017167"; depth 233 ; unknown ; N/A GL192870.1 samtools variation 921203 921203 . . . alleles " C T"; frequencies " 0.69811320754717 0.30188679245283"; depth 159 ; unknown ; N/A GL192870.1 samtools variation 921826 921826 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL192870.1 samtools variation 946791 946791 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 75 ; known ; N/A GL192870.1 samtools variation 949338 949338 . . . alleles " A C"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL192870.1 samtools variation 954804 954804 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192870.1 samtools variation 981299 981299 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192870.1 samtools variation 984536 984536 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192870.1 samtools variation 989635 989635 . . . alleles " G C"; frequencies " 0.713963963963964 0.286036036036036"; depth 444 ; known ; synonymous GL192870.1 samtools variation 1011782 1011782 . . . alleles " C T"; frequencies " 0.325 0.675"; depth 40 ; known ; N/A GL192870.1 samtools variation 1011864 1011864 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192870.1 samtools variation 1014184 1014184 . . . alleles " C T"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; synonymous GL192870.1 samtools variation 1016484 1016484 . . . alleles " T C"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; known ; N/A GL192870.1 samtools variation 1017407 1017407 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192870.1 samtools variation 1017864 1017864 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192870.1 samtools variation 1018559 1018559 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192870.1 samtools variation 1023426 1023426 . . . alleles " A G"; frequencies " 0.455538221528861 0.544461778471139"; depth 641 ; known ; synonymous GL192870.1 samtools variation 1023450 1023450 . . . alleles " A G"; frequencies " 0.436018957345972 0.562401263823065"; depth 633 ; known ; synonymous GL192870.1 samtools variation 1025178 1025178 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 326 ; known ; synonymous GL192870.1 samtools variation 1026338 1026338 . . . alleles " T C"; frequencies " 0.441696113074205 0.558303886925795"; depth 283 ; known ; synonymous GL192870.1 samtools variation 1026988 1026988 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 142 ; known ; synonymous GL192870.1 samtools variation 1032643 1032643 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 52 ; known ; non-synonymous GL192870.1 samtools variation 1033112 1033112 . . . alleles " C T"; frequencies " 0.794594594594595 0.205405405405405"; depth 185 ; unknown ; N/A GL192870.1 samtools variation 1033157 1033157 . . . alleles " A T"; frequencies " 0.560693641618497 0.439306358381503"; depth 173 ; known ; N/A GL192870.1 samtools variation 1033402 1033402 . . . alleles " A G"; frequencies " 0.602941176470588 0.397058823529412"; depth 68 ; known ; N/A GL192870.1 samtools variation 1039304 1039304 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; non-synonymous GL192870.1 samtools variation 1039696 1039696 . . . alleles " G C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; synonymous GL192870.1 samtools variation 1039837 1039837 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 20 ; known ; synonymous GL192870.1 samtools variation 1039888 1039888 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 22 ; known ; synonymous GL192870.1 samtools variation 1039977 1039977 . . . alleles " A G"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; known ; non-synonymous GL192870.1 samtools variation 1040198 1040198 . . . alleles " C T"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; known ; synonymous GL192870.1 samtools variation 1041540 1041540 . . . alleles " A C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192870.1 samtools variation 1049511 1049511 . . . alleles " G A"; frequencies " 0.379310344827586 0.620689655172414"; depth 174 ; known ; N/A GL192870.1 samtools variation 1051394 1051394 . . . alleles " G A"; frequencies " 0.693693693693694 0.306306306306306"; depth 111 ; unknown ; N/A GL192870.1 samtools variation 1051667 1051667 . . . alleles " G C"; frequencies " 0.721518987341772 0.278481012658228"; depth 79 ; unknown ; N/A GL192870.1 samtools variation 1067399 1067399 . . . alleles " G A"; frequencies " 0.728571428571429 0.271428571428571"; depth 70 ; unknown ; N/A GL192870.1 samtools variation 1068692 1068692 . . . alleles " T C"; frequencies " 0.657407407407407 0.342592592592593"; depth 108 ; unknown ; N/A GL192870.1 samtools variation 1069298 1069298 . . . alleles " G A"; frequencies " 0.740384615384615 0.259615384615385"; depth 104 ; unknown ; N/A GL192870.1 samtools variation 1120888 1120888 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192870.1 samtools variation 1130794 1130794 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192871.1 samtools variation 79796 79796 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL192871.1 samtools variation 426131 426131 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192871.1 samtools variation 443046 443046 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL192871.1 samtools variation 523888 523888 . . . alleles " C T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL192871.1 samtools variation 524172 524172 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192871.1 samtools variation 546514 546514 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; synonymous GL192871.1 samtools variation 560047 560047 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 28 ; unknown ; synonymous GL192871.1 samtools variation 562836 562836 . . . alleles " G A"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; synonymous GL192871.1 samtools variation 572110 572110 . . . alleles " G A"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; synonymous GL192871.1 samtools variation 699325 699325 . . . alleles " C T"; frequencies " 0.697916666666667 0.302083333333333"; depth 192 ; unknown ; synonymous GL192871.1 samtools variation 706641 706641 . . . alleles " G C"; frequencies " 0.733333333333333 0.266666666666667"; depth 90 ; unknown ; synonymous GL192871.1 samtools variation 714384 714384 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192871.1 samtools variation 722219 722219 . . . alleles " T A"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL192871.1 samtools variation 734872 734872 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192871.1 samtools variation 739097 739097 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192871.1 samtools variation 750632 750632 . . . alleles " T C"; frequencies " 0.455026455026455 0.53968253968254"; depth 189 ; unknown ; non-synonymous GL192871.1 samtools variation 753667 753667 . . . alleles " G A"; frequencies " 0.431506849315068 0.568493150684932"; depth 146 ; unknown ; non-synonymous GL192871.1 samtools variation 753702 753702 . . . alleles " C T"; frequencies " 0.429411764705882 0.570588235294118"; depth 170 ; unknown ; synonymous GL192871.1 samtools variation 753795 753795 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 160 ; unknown ; synonymous GL192871.1 samtools variation 756261 756261 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL192871.1 samtools variation 756604 756604 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192871.1 samtools variation 756955 756955 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192871.1 samtools variation 757100 757100 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192871.1 samtools variation 757182 757182 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192871.1 samtools variation 764568 764568 . . . alleles " C G"; frequencies " 0.710526315789474 0.280701754385965"; depth 114 ; unknown ; non-synonymous GL192871.1 samtools variation 764785 764785 . . . alleles " T G"; frequencies " 0.595744680851064 0.404255319148936"; depth 47 ; unknown ; N/A GL192871.1 samtools variation 764898 764898 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL192871.1 samtools variation 764905 764905 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; N/A GL192871.1 samtools variation 765005 765005 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 32 ; unknown ; N/A GL192871.1 samtools variation 765768 765768 . . . alleles " C T"; frequencies " 0.542635658914729 0.457364341085271"; depth 129 ; unknown ; synonymous GL192871.1 samtools variation 765804 765804 . . . alleles " T C"; frequencies " 0.535714285714286 0.464285714285714"; depth 112 ; unknown ; synonymous GL192871.1 samtools variation 765954 765954 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192871.1 samtools variation 766480 766480 . . . alleles " T C"; frequencies " 0.516129032258065 0.483870967741935"; depth 62 ; unknown ; non-synonymous GL192871.1 samtools variation 768321 768321 . . . alleles " C T"; frequencies " 0.590579710144927 0.409420289855072"; depth 276 ; unknown ; N/A GL192871.1 samtools variation 768439 768439 . . . alleles " T C"; frequencies " 0.535564853556485 0.464435146443515"; depth 239 ; unknown ; N/A GL192871.1 samtools variation 769099 769099 . . . alleles " G A"; frequencies " 0.495114006514658 0.504885993485342"; depth 307 ; unknown ; N/A GL192871.1 samtools variation 769534 769534 . . . alleles " G A"; frequencies " 0.433734939759036 0.566265060240964"; depth 83 ; unknown ; N/A GL192871.1 samtools variation 769734 769734 . . . alleles " A G"; frequencies " 0.68944099378882 0.31055900621118"; depth 161 ; unknown ; N/A GL192871.1 samtools variation 796579 796579 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192871.1 samtools variation 797524 797524 . . . alleles " T C"; frequencies " 0.745762711864407 0.254237288135593"; depth 59 ; unknown ; N/A GL192871.1 samtools variation 807132 807132 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL192871.1 samtools variation 809015 809015 . . . alleles " G A"; frequencies " 0.44954128440367 0.55045871559633"; depth 109 ; unknown ; N/A GL192871.1 samtools variation 809056 809056 . . . alleles " G A"; frequencies " 0.224299065420561 0.775700934579439"; depth 107 ; known ; N/A GL192871.1 samtools variation 809264 809264 . . . alleles " C T"; frequencies " 0.378787878787879 0.621212121212121"; depth 66 ; unknown ; N/A GL192871.1 samtools variation 821415 821415 . . . alleles " C G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192871.1 samtools variation 821514 821514 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 20 ; known ; N/A GL192871.1 samtools variation 821699 821699 . . . alleles " T A"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192871.1 samtools variation 821848 821848 . . . alleles " A G"; frequencies " 0.30859375 0.69140625"; depth 256 ; known ; synonymous GL192871.1 samtools variation 827041 827041 . . . alleles " C T"; frequencies " 0.419753086419753 0.580246913580247"; depth 81 ; unknown ; N/A GL192871.1 samtools variation 827078 827078 . . . alleles " T C"; frequencies " 0.432098765432099 0.567901234567901"; depth 81 ; unknown ; N/A GL192871.1 samtools variation 827127 827127 . . . alleles " G A"; frequencies " 0.794871794871795 0.205128205128205"; depth 78 ; unknown ; N/A GL192871.1 samtools variation 827788 827788 . . . alleles " C T"; frequencies " 0.755639097744361 0.244360902255639"; depth 266 ; unknown ; N/A GL192871.1 samtools variation 829850 829850 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192871.1 samtools variation 829866 829866 . . . alleles " G A"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192871.1 samtools variation 835399 835399 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 25 ; known ; N/A GL192871.1 samtools variation 844978 844978 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 39 ; known ; N/A GL192871.1 samtools variation 845044 845044 . . . alleles " T G"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL192871.1 samtools variation 868567 868567 . . . alleles " C T"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL192871.1 samtools variation 869766 869766 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 210 ; known ; synonymous GL192871.1 samtools variation 870522 870522 . . . alleles " A G"; frequencies " 0.240875912408759 0.759124087591241"; depth 274 ; known ; synonymous GL192871.1 samtools variation 870995 870995 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 221 ; known ; synonymous GL192871.1 samtools variation 872891 872891 . . . alleles " G A"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL192871.1 samtools variation 872937 872937 . . . alleles " C T"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL192871.1 samtools variation 874207 874207 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192871.1 samtools variation 879815 879815 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192871.1 samtools variation 879889 879889 . . . alleles " C T"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; known ; N/A GL192871.1 samtools variation 888426 888426 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192871.1 samtools variation 890074 890074 . . . alleles " C A"; frequencies " 0.660511363636364 0.339488636363636"; depth 704 ; known ; synonymous GL192871.1 samtools variation 893359 893359 . . . alleles " A G"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; known ; N/A GL192871.1 samtools variation 912810 912810 . . . alleles " T C"; frequencies " 0.740902474526929 0.259097525473071"; depth 687 ; known ; N/A GL192871.1 samtools variation 914010 914010 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL192871.1 samtools variation 922889 922889 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 63 ; known ; N/A GL192871.1 samtools variation 924655 924655 . . . alleles " A G"; frequencies " 0.632743362831858 0.367256637168142"; depth 226 ; known ; synonymous GL192871.1 samtools variation 944213 944213 . . . alleles " A G"; frequencies " 0.513157894736842 0.486842105263158"; depth 76 ; unknown ; N/A GL192871.1 samtools variation 959727 959727 . . . alleles " A G"; frequencies " 0.254237288135593 0.745762711864407"; depth 59 ; known ; N/A GL192871.1 samtools variation 959789 959789 . . . alleles " A C"; frequencies " 0.371428571428571 0.628571428571429"; depth 35 ; known ; N/A GL192871.1 samtools variation 959801 959801 . . . alleles " A T"; frequencies " 0.625 0.375"; depth 32 ; known ; N/A GL192871.1 samtools variation 959961 959961 . . . alleles " C A"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; known ; N/A GL192871.1 samtools variation 1015375 1015375 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; synonymous GL192871.1 samtools variation 1026840 1026840 . . . alleles " T C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; synonymous GL192871.1 samtools variation 1030290 1030290 . . . alleles " T C"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; N/A GL192871.1 samtools variation 1033782 1033782 . . . alleles " A C"; frequencies " 0.8 0.2"; depth 50 ; known ; N/A GL192871.1 samtools variation 1036180 1036180 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192871.1 samtools variation 1036190 1036190 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192871.1 samtools variation 1038397 1038397 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192871.1 samtools variation 1039492 1039492 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192871.1 samtools variation 1039537 1039537 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL192871.1 samtools variation 1060657 1060657 . . . alleles " C T"; frequencies " 0.648514851485149 0.351485148514851"; depth 202 ; known ; N/A GL192871.1 samtools variation 1067352 1067352 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 40 ; unknown ; N/A GL192871.1 samtools variation 1106645 1106645 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192871.1 samtools variation 1106957 1106957 . . . alleles " T C"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL192871.1 samtools variation 1109702 1109702 . . . alleles " T C"; frequencies " 0.439759036144578 0.560240963855422"; depth 166 ; unknown ; N/A GL192871.1 samtools variation 1112631 1112631 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192872.1 samtools variation 31751 31751 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; unknown ; N/A GL192872.1 samtools variation 48917 48917 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192872.1 samtools variation 55309 55309 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192872.1 samtools variation 56488 56488 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192872.1 samtools variation 84674 84674 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192872.1 samtools variation 89102 89102 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192872.1 samtools variation 357790 357790 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; synonymous GL192872.1 samtools variation 385376 385376 . . . alleles " G C"; frequencies " 0.783783783783784 0.216216216216216"; depth 74 ; unknown ; N/A GL192872.1 samtools variation 385803 385803 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192872.1 samtools variation 604953 604953 . . . alleles " G A"; frequencies " 0.489795918367347 0.510204081632653"; depth 98 ; unknown ; N/A GL192872.1 samtools variation 616472 616472 . . . alleles " T A"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; non-synonymous GL192872.1 samtools variation 899202 899202 . . . alleles " G C"; frequencies " 0.427807486631016 0.572192513368984"; depth 187 ; known ; non-synonymous GL192872.1 samtools variation 929968 929968 . . . alleles " A G"; frequencies " 0.436619718309859 0.563380281690141"; depth 71 ; unknown ; N/A GL192872.1 samtools variation 945131 945131 . . . alleles " G T"; frequencies " 0.54337899543379 0.45662100456621"; depth 438 ; unknown ; N/A GL192872.1 samtools variation 945162 945162 . . . alleles " A G"; frequencies " 0.531806615776081 0.468193384223919"; depth 393 ; known ; N/A GL192872.1 samtools variation 949784 949784 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192872.1 samtools variation 968900 968900 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192872.1 samtools variation 980222 980222 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192872.1 samtools variation 993443 993443 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192873.1 samtools variation 221268 221268 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192873.1 samtools variation 234495 234495 . . . alleles " T G"; frequencies " 0.753246753246753 0.246753246753247"; depth 77 ; unknown ; non-synonymous GL192873.1 samtools variation 292962 292962 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192873.1 samtools variation 293367 293367 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192873.1 samtools variation 313469 313469 . . . alleles " G A"; frequencies " 0.757097791798107 0.242902208201893"; depth 317 ; unknown ; N/A GL192873.1 samtools variation 319718 319718 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192873.1 samtools variation 319773 319773 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192873.1 samtools variation 524471 524471 . . . alleles " C T"; frequencies " 0.263157894736842 0.736842105263158"; depth 57 ; unknown ; N/A GL192873.1 samtools variation 524673 524673 . . . alleles " T A"; frequencies " 0.246376811594203 0.753623188405797"; depth 69 ; unknown ; N/A GL192876.1 samtools variation 422137 422137 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192876.1 samtools variation 429393 429393 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192876.1 samtools variation 432089 432089 . . . alleles " T C"; frequencies " 0.78 0.22"; depth 50 ; unknown ; N/A GL192876.1 samtools variation 439263 439263 . . . alleles " G A"; frequencies " 0.646875 0.353125"; depth 320 ; known ; synonymous GL192876.1 samtools variation 439560 439560 . . . alleles " G A"; frequencies " 0.673913043478261 0.326086956521739"; depth 92 ; known ; synonymous GL192876.1 samtools variation 454695 454695 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192876.1 samtools variation 454858 454858 . . . alleles " A T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192876.1 samtools variation 466807 466807 . . . alleles " C T"; frequencies " 0.539393939393939 0.460606060606061"; depth 330 ; unknown ; synonymous GL192876.1 samtools variation 471947 471947 . . . alleles " G C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192876.1 samtools variation 473339 473339 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192876.1 samtools variation 473369 473369 . . . alleles " C A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192876.1 samtools variation 473431 473431 . . . alleles " G T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192876.1 samtools variation 473483 473483 . . . alleles " G C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192876.1 samtools variation 473996 473996 . . . alleles " C T"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; unknown ; N/A GL192876.1 samtools variation 474011 474011 . . . alleles " C T"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL192876.1 samtools variation 475569 475569 . . . alleles " A C"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; unknown ; N/A GL192876.1 samtools variation 480844 480844 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192876.1 samtools variation 483384 483384 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192876.1 samtools variation 485796 485796 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192876.1 samtools variation 486215 486215 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192876.1 samtools variation 486902 486902 . . . alleles " T A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192876.1 samtools variation 489051 489051 . . . alleles " C A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192876.1 samtools variation 489484 489484 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL192876.1 samtools variation 491612 491612 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192876.1 samtools variation 491947 491947 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192878.1 samtools variation 514385 514385 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192878.1 samtools variation 603084 603084 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192878.1 samtools variation 603899 603899 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192879.1 samtools variation 135939 135939 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192879.1 samtools variation 524706 524706 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192879.1 samtools variation 531121 531121 . . . alleles " A G"; frequencies " 0.325581395348837 0.674418604651163"; depth 43 ; unknown ; N/A GL192879.1 samtools variation 532035 532035 . . . alleles " A C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192879.1 samtools variation 567094 567094 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL192879.1 samtools variation 585517 585517 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192879.1 samtools variation 717740 717740 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192879.1 samtools variation 727187 727187 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 48 ; unknown ; synonymous GL192879.1 samtools variation 772957 772957 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192879.1 samtools variation 842535 842535 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 38 ; unknown ; synonymous GL192880.1 samtools variation 21504 21504 . . . alleles " C T"; frequencies " 0.371428571428571 0.628571428571429"; depth 35 ; known ; N/A GL192880.1 samtools variation 39824 39824 . . . alleles " T G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; non-synonymous GL192880.1 samtools variation 51766 51766 . . . alleles " A C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192880.1 samtools variation 139571 139571 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192880.1 samtools variation 139681 139681 . . . alleles " C G"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; known ; N/A GL192880.1 samtools variation 140514 140514 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192880.1 samtools variation 142465 142465 . . . alleles " A C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192880.1 samtools variation 146286 146286 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192880.1 samtools variation 147631 147631 . . . alleles " G A"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL192880.1 samtools variation 147834 147834 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; known ; N/A GL192880.1 samtools variation 149313 149313 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192880.1 samtools variation 149806 149806 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192880.1 samtools variation 150410 150410 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL192880.1 samtools variation 151328 151328 . . . alleles " C A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL192880.1 samtools variation 439233 439233 . . . alleles " C T"; frequencies " 0.648148148148148 0.351851851851852"; depth 54 ; unknown ; synonymous GL192880.1 samtools variation 447062 447062 . . . alleles " A T"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; non-synonymous GL192880.1 samtools variation 483272 483272 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192880.1 samtools variation 497205 497205 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL192880.1 samtools variation 504037 504037 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192880.1 samtools variation 504349 504349 . . . alleles " A T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192880.1 samtools variation 504754 504754 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192880.1 samtools variation 505041 505041 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192880.1 samtools variation 505066 505066 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192880.1 samtools variation 505540 505540 . . . alleles " G T"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL192880.1 samtools variation 506688 506688 . . . alleles " G A"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL192880.1 samtools variation 506990 506990 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192880.1 samtools variation 507930 507930 . . . alleles " C A"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; unknown ; N/A GL192881.1 samtools variation 107235 107235 . . . alleles " A T"; frequencies " 0.682926829268293 0.276422764227642"; depth 123 ; unknown ; N/A GL192881.1 samtools variation 117389 117389 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192881.1 samtools variation 131279 131279 . . . alleles " T G"; frequencies " 0.758620689655172 0.241379310344828"; depth 58 ; unknown ; N/A GL192881.1 samtools variation 138973 138973 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; non-synonymous GL192881.1 samtools variation 140649 140649 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192881.1 samtools variation 223811 223811 . . . alleles " C G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192881.1 samtools variation 226222 226222 . . . alleles " T G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192881.1 samtools variation 235840 235840 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192881.1 samtools variation 235886 235886 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192881.1 samtools variation 236136 236136 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; known ; N/A GL192881.1 samtools variation 236161 236161 . . . alleles " G A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; known ; N/A GL192881.1 samtools variation 236506 236506 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 48 ; known ; N/A GL192881.1 samtools variation 236805 236805 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 55 ; known ; N/A GL192881.1 samtools variation 238610 238610 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192881.1 samtools variation 238844 238844 . . . alleles " G A"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; known ; N/A GL192881.1 samtools variation 243532 243532 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; known ; N/A GL192881.1 samtools variation 248658 248658 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192881.1 samtools variation 248686 248686 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192881.1 samtools variation 279006 279006 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; non-synonymous GL192881.1 samtools variation 279010 279010 . . . alleles " C T"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; non-synonymous GL192881.1 samtools variation 288908 288908 . . . alleles " C T"; frequencies " 0.581395348837209 0.418604651162791"; depth 43 ; known ; synonymous GL192881.1 samtools variation 322576 322576 . . . alleles " G A"; frequencies " 0.276190476190476 0.723809523809524"; depth 105 ; unknown ; N/A GL192881.1 samtools variation 467499 467499 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192881.1 samtools variation 468144 468144 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL192881.1 samtools variation 469336 469336 . . . alleles " A G"; frequencies " 0.372093023255814 0.627906976744186"; depth 43 ; unknown ; N/A GL192881.1 samtools variation 469527 469527 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 42 ; unknown ; N/A GL192881.1 samtools variation 469876 469876 . . . alleles " T C"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL192881.1 samtools variation 469954 469954 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192881.1 samtools variation 469985 469985 . . . alleles " A C"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL192881.1 samtools variation 493726 493726 . . . alleles " A G"; frequencies " 0.753424657534247 0.246575342465753"; depth 73 ; unknown ; N/A GL192881.1 samtools variation 498816 498816 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192881.1 samtools variation 499642 499642 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192881.1 samtools variation 505966 505966 . . . alleles " A C"; frequencies " 0.8 0.2"; depth 85 ; unknown ; N/A GL192881.1 samtools variation 949595 949595 . . . alleles " A T"; frequencies " 0.299145299145299 0.700854700854701"; depth 234 ; unknown ; N/A GL192881.1 samtools variation 949806 949806 . . . alleles " T A"; frequencies " 0.46 0.54"; depth 50 ; unknown ; N/A GL192881.1 samtools variation 950597 950597 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192881.1 samtools variation 950886 950886 . . . alleles " A C"; frequencies " 0.32 0.68"; depth 75 ; unknown ; N/A GL192881.1 samtools variation 950965 950965 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 70 ; unknown ; N/A GL192881.1 samtools variation 950966 950966 . . . alleles " G A"; frequencies " 0.6375 0.3625"; depth 80 ; unknown ; N/A GL192881.1 samtools variation 951492 951492 . . . alleles " A G"; frequencies " 0.402116402116402 0.597883597883598"; depth 189 ; unknown ; N/A GL192881.1 samtools variation 951524 951524 . . . alleles " G A"; frequencies " 0.372448979591837 0.627551020408163"; depth 196 ; unknown ; N/A GL192881.1 samtools variation 951855 951855 . . . alleles " G C"; frequencies " 0.489795918367347 0.510204081632653"; depth 98 ; unknown ; N/A GL192881.1 samtools variation 951950 951950 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 55 ; unknown ; N/A GL192881.1 samtools variation 952007 952007 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 48 ; unknown ; N/A GL192881.1 samtools variation 968992 968992 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192881.1 samtools variation 986371 986371 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192881.1 samtools variation 987884 987884 . . . alleles " T G"; frequencies " 0.683333333333333 0.316666666666667"; depth 180 ; unknown ; synonymous GL192881.1 samtools variation 987893 987893 . . . alleles " C T"; frequencies " 0.446236559139785 0.553763440860215"; depth 186 ; unknown ; synonymous GL192881.1 samtools variation 993337 993337 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192881.1 samtools variation 993445 993445 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; N/A GL192881.1 samtools variation 993526 993526 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192881.1 samtools variation 993645 993645 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL192881.1 samtools variation 996689 996689 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192881.1 samtools variation 996718 996718 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192881.1 samtools variation 996805 996805 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 36 ; unknown ; synonymous GL192881.1 samtools variation 996820 996820 . . . alleles " A G"; frequencies " 0.377777777777778 0.622222222222222"; depth 45 ; known ; synonymous GL192881.1 samtools variation 1036084 1036084 . . . alleles " T G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192881.1 samtools variation 1037577 1037577 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192881.1 samtools variation 1101727 1101727 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 90 ; unknown ; N/A GL192881.1 samtools variation 1104339 1104339 . . . alleles " A C"; frequencies " 0.56951596292482 0.43048403707518"; depth 971 ; unknown ; N/A GL192881.1 samtools variation 1104879 1104879 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 78 ; unknown ; N/A GL192881.1 samtools variation 1104950 1104950 . . . alleles " C G"; frequencies " 0.560344827586207 0.439655172413793"; depth 116 ; unknown ; N/A GL192881.1 samtools variation 1105692 1105692 . . . alleles " G C"; frequencies " 0.682170542635659 0.317829457364341"; depth 129 ; unknown ; N/A GL192881.1 samtools variation 1107478 1107478 . . . alleles " T C"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; N/A GL192881.1 samtools variation 1122900 1122900 . . . alleles " C T"; frequencies " 0.543039677202421 0.455615332885003"; depth 2974 ; unknown ; non-synonymous GL192881.1 samtools variation 1123182 1123182 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 64 ; unknown ; N/A GL192881.1 samtools variation 1123235 1123235 . . . alleles " C T"; frequencies " 0.737704918032787 0.262295081967213"; depth 61 ; unknown ; N/A GL192881.1 samtools variation 1125566 1125566 . . . alleles " C G"; frequencies " 0.489467162329616 0.510532837670384"; depth 807 ; unknown ; N/A GL192881.1 samtools variation 1126199 1126199 . . . alleles " T C"; frequencies " 0.452830188679245 0.547169811320755"; depth 53 ; unknown ; N/A GL192881.1 samtools variation 1126535 1126535 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 38 ; unknown ; N/A GL192881.1 samtools variation 1126824 1126824 . . . alleles " T C"; frequencies " 0.571988246816846 0.428011753183154"; depth 1021 ; unknown ; synonymous GL192881.1 samtools variation 1128884 1128884 . . . alleles " G C"; frequencies " 0.378787878787879 0.621212121212121"; depth 66 ; unknown ; N/A GL192881.1 samtools variation 1130250 1130250 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 120 ; unknown ; N/A GL192881.1 samtools variation 1130325 1130325 . . . alleles " T C"; frequencies " 0.455696202531646 0.544303797468354"; depth 79 ; unknown ; N/A GL192881.1 samtools variation 1132342 1132342 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192881.1 samtools variation 1132686 1132686 . . . alleles " A C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL192881.1 samtools variation 1136596 1136596 . . . alleles " G A"; frequencies " 0.676923076923077 0.323076923076923"; depth 65 ; known ; N/A GL192881.1 samtools variation 1136708 1136708 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; known ; N/A GL192881.1 samtools variation 1136836 1136836 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192881.1 samtools variation 1137018 1137018 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192881.1 samtools variation 1137104 1137104 . . . alleles " C A"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; unknown ; N/A GL192881.1 samtools variation 1137865 1137865 . . . alleles " T A"; frequencies " 0.269662921348315 0.730337078651685"; depth 89 ; unknown ; N/A GL192881.1 samtools variation 1137992 1137992 . . . alleles " A C"; frequencies " 0.754098360655738 0.245901639344262"; depth 61 ; unknown ; N/A GL192881.1 samtools variation 1138711 1138711 . . . alleles " T A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192881.1 samtools variation 1139989 1139989 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192883.1 samtools variation 475818 475818 . . . alleles " C T"; frequencies " 0.657534246575342 0.342465753424658"; depth 219 ; unknown ; N/A GL192883.1 samtools variation 475891 475891 . . . alleles " A G"; frequencies " 0.531157270029674 0.468842729970326"; depth 337 ; known ; N/A GL192883.1 samtools variation 476123 476123 . . . alleles " C G"; frequencies " 0.254385964912281 0.745614035087719"; depth 114 ; unknown ; synonymous GL192883.1 samtools variation 478838 478838 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192883.1 samtools variation 485329 485329 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 44 ; unknown ; N/A GL192883.1 samtools variation 486461 486461 . . . alleles " A C"; frequencies " 0.767326732673267 0.232673267326733"; depth 202 ; unknown ; N/A GL192883.1 samtools variation 487573 487573 . . . alleles " T C"; frequencies " 0.472303206997085 0.527696793002915"; depth 343 ; unknown ; non-synonymous GL192883.1 samtools variation 487902 487902 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192883.1 samtools variation 501901 501901 . . . alleles " G A"; frequencies " 0.704081632653061 0.295918367346939"; depth 98 ; unknown ; N/A GL192883.1 samtools variation 502754 502754 . . . alleles " G A"; frequencies " 0.66015625 0.33984375"; depth 256 ; known ; non-synonymous GL192883.1 samtools variation 502990 502990 . . . alleles " G A"; frequencies " 0.782312925170068 0.217687074829932"; depth 294 ; unknown ; synonymous GL192883.1 samtools variation 524065 524065 . . . alleles " C G"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192883.1 samtools variation 535887 535887 . . . alleles " G A"; frequencies " 0.678787878787879 0.321212121212121"; depth 165 ; known ; N/A GL192883.1 samtools variation 536362 536362 . . . alleles " C T"; frequencies " 0.355263157894737 0.644736842105263"; depth 684 ; known ; N/A GL192883.1 samtools variation 536749 536749 . . . alleles " C T"; frequencies " 0.326923076923077 0.673076923076923"; depth 364 ; known ; N/A GL192883.1 samtools variation 536823 536823 . . . alleles " C A"; frequencies " 0.38034188034188 0.61965811965812"; depth 234 ; known ; N/A GL192883.1 samtools variation 546429 546429 . . . alleles " T C"; frequencies " 0.56 0.44"; depth 25 ; known ; N/A GL192883.1 samtools variation 547721 547721 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192883.1 samtools variation 550138 550138 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192883.1 samtools variation 550430 550430 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL192883.1 samtools variation 553777 553777 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192883.1 samtools variation 775309 775309 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 36 ; known ; N/A GL192883.1 samtools variation 776956 776956 . . . alleles " G A"; frequencies " 0.745454545454545 0.254545454545455"; depth 55 ; unknown ; N/A GL192883.1 samtools variation 778763 778763 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192886.1 samtools variation 80321 80321 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL192886.1 samtools variation 100264 100264 . . . alleles " A G"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL192886.1 samtools variation 738903 738903 . . . alleles " A G"; frequencies " 0.302752293577982 0.697247706422018"; depth 109 ; unknown ; synonymous GL192886.1 samtools variation 762009 762009 . . . alleles " G C"; frequencies " 0.644859813084112 0.355140186915888"; depth 107 ; known ; synonymous GL192886.1 samtools variation 834914 834914 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192886.1 samtools variation 862837 862837 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL192886.1 samtools variation 862977 862977 . . . alleles " T C"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; known ; N/A GL192886.1 samtools variation 869475 869475 . . . alleles " G C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192887.1 samtools variation 45144 45144 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192887.1 samtools variation 45739 45739 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192887.1 samtools variation 51853 51853 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192887.1 samtools variation 65298 65298 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 44 ; unknown ; non-synonymous GL192887.1 samtools variation 67290 67290 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192887.1 samtools variation 67732 67732 . . . alleles " A C"; frequencies " 0.515625 0.484375"; depth 64 ; unknown ; N/A GL192887.1 samtools variation 108837 108837 . . . alleles " G T"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL192887.1 samtools variation 108875 108875 . . . alleles " A G"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; unknown ; N/A GL192887.1 samtools variation 110003 110003 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; non-synonymous GL192887.1 samtools variation 110667 110667 . . . alleles " T A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192887.1 samtools variation 110822 110822 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL192887.1 samtools variation 111132 111132 . . . alleles " T C"; frequencies " 0.616666666666667 0.383333333333333"; depth 60 ; unknown ; N/A GL192887.1 samtools variation 111717 111717 . . . alleles " T C"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192887.1 samtools variation 111768 111768 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 54 ; unknown ; N/A GL192887.1 samtools variation 112054 112054 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 65 ; unknown ; N/A GL192887.1 samtools variation 112088 112088 . . . alleles " G T"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; unknown ; N/A GL192887.1 samtools variation 112103 112103 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 52 ; unknown ; N/A GL192887.1 samtools variation 112395 112395 . . . alleles " T C"; frequencies " 0.669902912621359 0.330097087378641"; depth 103 ; unknown ; N/A GL192887.1 samtools variation 113270 113270 . . . alleles " A G"; frequencies " 0.58695652173913 0.41304347826087"; depth 92 ; unknown ; N/A GL192887.1 samtools variation 113425 113425 . . . alleles " A G"; frequencies " 0.615 0.385"; depth 200 ; unknown ; N/A GL192887.1 samtools variation 113685 113685 . . . alleles " C T"; frequencies " 0.536363636363636 0.463636363636364"; depth 110 ; unknown ; N/A GL192887.1 samtools variation 113714 113714 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 180 ; unknown ; N/A GL192887.1 samtools variation 115297 115297 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL192887.1 samtools variation 115435 115435 . . . alleles " A G"; frequencies " 0.534574468085106 0.465425531914894"; depth 376 ; unknown ; N/A GL192887.1 samtools variation 115539 115539 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 208 ; unknown ; N/A GL192887.1 samtools variation 115779 115779 . . . alleles " T A"; frequencies " 0.707736389684814 0.292263610315186"; depth 349 ; unknown ; N/A GL192887.1 samtools variation 116035 116035 . . . alleles " A T"; frequencies " 0.278061224489796 0.721938775510204"; depth 392 ; unknown ; N/A GL192887.1 samtools variation 116070 116070 . . . alleles " C T"; frequencies " 0.225694444444444 0.774305555555556"; depth 288 ; unknown ; N/A GL192887.1 samtools variation 116071 116071 . . . alleles " G A"; frequencies " 0.786713286713287 0.213286713286713"; depth 286 ; unknown ; N/A GL192887.1 samtools variation 116780 116780 . . . alleles " T C"; frequencies " 0.793103448275862 0.206896551724138"; depth 58 ; unknown ; N/A GL192887.1 samtools variation 119593 119593 . . . alleles " C T"; frequencies " 0.72972972972973 0.27027027027027"; depth 111 ; unknown ; N/A GL192887.1 samtools variation 119938 119938 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192887.1 samtools variation 120784 120784 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL192887.1 samtools variation 121857 121857 . . . alleles " T C"; frequencies " 0.306818181818182 0.693181818181818"; depth 88 ; unknown ; N/A GL192887.1 samtools variation 122017 122017 . . . alleles " A T"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; unknown ; N/A GL192887.1 samtools variation 122102 122102 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192887.1 samtools variation 122376 122376 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192887.1 samtools variation 122562 122562 . . . alleles " T C"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192887.1 samtools variation 122741 122741 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192887.1 samtools variation 122847 122847 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL192887.1 samtools variation 122955 122955 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192887.1 samtools variation 124574 124574 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192887.1 samtools variation 126617 126617 . . . alleles " T G"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL192887.1 samtools variation 127832 127832 . . . alleles " C T"; frequencies " 0.344155844155844 0.655844155844156"; depth 616 ; unknown ; synonymous GL192887.1 samtools variation 127882 127882 . . . alleles " T C"; frequencies " 0.339430894308943 0.660569105691057"; depth 492 ; unknown ; non-synonymous GL192887.1 samtools variation 128437 128437 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192887.1 samtools variation 128546 128546 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192887.1 samtools variation 209160 209160 . . . alleles " C T"; frequencies " 0.391666666666667 0.608333333333333"; depth 120 ; known ; synonymous GL192887.1 samtools variation 223219 223219 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192887.1 samtools variation 223242 223242 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL192887.1 samtools variation 223379 223379 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 34 ; known ; N/A GL192887.1 samtools variation 224681 224681 . . . alleles " C T"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; known ; N/A GL192887.1 samtools variation 232556 232556 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192887.1 samtools variation 258790 258790 . . . alleles " C T"; frequencies " 0.484848484848485 0.515151515151515"; depth 132 ; known ; non-synonymous GL192887.1 samtools variation 261555 261555 . . . alleles " T G"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; non-synonymous GL192887.1 samtools variation 270266 270266 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192889.1 samtools variation 76354 76354 . . . alleles " C T"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; known ; N/A GL192889.1 samtools variation 86442 86442 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192889.1 samtools variation 119919 119919 . . . alleles " A G"; frequencies " 0.203703703703704 0.796296296296296"; depth 648 ; known ; N/A GL192889.1 samtools variation 126876 126876 . . . alleles " C T"; frequencies " 0.204081632653061 0.795918367346939"; depth 49 ; known ; N/A GL192889.1 samtools variation 131477 131477 . . . alleles " C T"; frequencies " 0.77027027027027 0.22972972972973"; depth 370 ; unknown ; synonymous GL192889.1 samtools variation 139687 139687 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192889.1 samtools variation 154421 154421 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192889.1 samtools variation 158552 158552 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192889.1 samtools variation 254873 254873 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192889.1 samtools variation 267966 267966 . . . alleles " G T"; frequencies " 0.230769230769231 0.769230769230769"; depth 117 ; known ; non-synonymous GL192889.1 samtools variation 287133 287133 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192889.1 samtools variation 291191 291191 . . . alleles " A G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; known ; N/A GL192889.1 samtools variation 1206700 1206700 . . . alleles " A G"; frequencies " 0.615384615384615 0.307692307692308"; depth 13 ; unknown ; N/A GL192889.1 samtools variation 1222543 1222543 . . . alleles " G A"; frequencies " 0.622950819672131 0.377049180327869"; depth 61 ; known ; N/A GL192890.1 samtools variation 32291 32291 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192890.1 samtools variation 72082 72082 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192890.1 samtools variation 166194 166194 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192890.1 samtools variation 270717 270717 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192891.1 samtools variation 86457 86457 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192891.1 samtools variation 104367 104367 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192891.1 samtools variation 104491 104491 . . . alleles " C T"; frequencies " 0.536363636363636 0.463636363636364"; depth 110 ; unknown ; non-synonymous GL192891.1 samtools variation 131160 131160 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; non-synonymous GL192891.1 samtools variation 142712 142712 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192891.1 samtools variation 151644 151644 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192891.1 samtools variation 152660 152660 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192891.1 samtools variation 155116 155116 . . . alleles " A G"; frequencies " 0.207547169811321 0.792452830188679"; depth 53 ; unknown ; N/A GL192891.1 samtools variation 156741 156741 . . . alleles " T C"; frequencies " 0.528735632183908 0.471264367816092"; depth 87 ; unknown ; non-synonymous GL192891.1 samtools variation 157407 157407 . . . alleles " T G"; frequencies " 0.433333333333333 0.566666666666667"; depth 60 ; unknown ; N/A GL192891.1 samtools variation 157917 157917 . . . alleles " T G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192891.1 samtools variation 191002 191002 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; non-synonymous GL192891.1 samtools variation 195105 195105 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 35 ; unknown ; N/A GL192891.1 samtools variation 195127 195127 . . . alleles " A G"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; N/A GL192891.1 samtools variation 200576 200576 . . . alleles " C A"; frequencies " 0.304878048780488 0.695121951219512"; depth 82 ; unknown ; N/A GL192891.1 samtools variation 232443 232443 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192891.1 samtools variation 350318 350318 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; non-synonymous GL192891.1 samtools variation 352207 352207 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; non-synonymous GL192891.1 samtools variation 352603 352603 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 20 ; known ; synonymous GL192891.1 samtools variation 419200 419200 . . . alleles " T A"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL192891.1 samtools variation 419721 419721 . . . alleles " G T"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192891.1 samtools variation 421311 421311 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192891.1 samtools variation 424370 424370 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192891.1 samtools variation 426380 426380 . . . alleles " C T"; frequencies " 0.222222222222222 0.777777777777778"; depth 36 ; unknown ; N/A GL192891.1 samtools variation 426397 426397 . . . alleles " C A"; frequencies " 0.218181818181818 0.781818181818182"; depth 55 ; unknown ; N/A GL192891.1 samtools variation 447638 447638 . . . alleles " G A"; frequencies " 0.656565656565657 0.343434343434343"; depth 99 ; unknown ; N/A GL192891.1 samtools variation 453449 453449 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL192891.1 samtools variation 453568 453568 . . . alleles " C T"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192891.1 samtools variation 470469 470469 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 75 ; known ; synonymous GL192891.1 samtools variation 475063 475063 . . . alleles " A T"; frequencies " 0.657534246575342 0.342465753424658"; depth 73 ; unknown ; N/A GL192891.1 samtools variation 560346 560346 . . . alleles " A G"; frequencies " 0.71007371007371 0.287469287469287"; depth 407 ; unknown ; synonymous GL192891.1 samtools variation 563214 563214 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192891.1 samtools variation 608168 608168 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 76 ; known ; synonymous GL192891.1 samtools variation 608689 608689 . . . alleles " G C"; frequencies " 0.534883720930233 0.465116279069767"; depth 43 ; known ; non-synonymous GL192891.1 samtools variation 631008 631008 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192891.1 samtools variation 633244 633244 . . . alleles " G A"; frequencies " 0.28125 0.71875"; depth 64 ; known ; N/A GL192891.1 samtools variation 684705 684705 . . . alleles " G T"; frequencies " 0.375 0.625"; depth 96 ; known ; N/A GL192891.1 samtools variation 701350 701350 . . . alleles " G C"; frequencies " 0.736196319018405 0.263803680981595"; depth 978 ; unknown ; N/A GL192891.1 samtools variation 753128 753128 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 150 ; known ; non-synonymous GL192891.1 samtools variation 756482 756482 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192891.1 samtools variation 777972 777972 . . . alleles " G A"; frequencies " 0.752688172043011 0.247311827956989"; depth 93 ; unknown ; N/A GL192891.1 samtools variation 781541 781541 . . . alleles " G A"; frequencies " 0.207142857142857 0.792857142857143"; depth 280 ; known ; N/A GL192891.1 samtools variation 837870 837870 . . . alleles " C T"; frequencies " 0.519298245614035 0.47719298245614"; depth 285 ; unknown ; synonymous GL192891.1 samtools variation 839129 839129 . . . alleles " T C"; frequencies " 0.692546583850932 0.307453416149068"; depth 322 ; known ; synonymous GL192891.1 samtools variation 839693 839693 . . . alleles " C T"; frequencies " 0.323262839879154 0.676737160120846"; depth 331 ; known ; non-synonymous GL192891.1 samtools variation 846616 846616 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL192891.1 samtools variation 851113 851113 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 66 ; unknown ; non-synonymous GL192891.1 samtools variation 851691 851691 . . . alleles " C T"; frequencies " 0.386363636363636 0.613636363636364"; depth 352 ; unknown ; synonymous GL192891.1 samtools variation 851803 851803 . . . alleles " G C"; frequencies " 0.464285714285714 0.535714285714286"; depth 112 ; unknown ; non-synonymous GL192891.1 samtools variation 851819 851819 . . . alleles " G A"; frequencies " 0.53 0.47"; depth 100 ; unknown ; non-synonymous GL192891.1 samtools variation 851824 851824 . . . alleles " G T"; frequencies " 0.614583333333333 0.385416666666667"; depth 96 ; unknown ; non-synonymous GL192891.1 samtools variation 852838 852838 . . . alleles " C G"; frequencies " 0.794621026894866 0.205378973105134"; depth 409 ; unknown ; non-synonymous GL192891.1 samtools variation 854969 854969 . . . alleles " A G"; frequencies " 0.670886075949367 0.329113924050633"; depth 395 ; known ; synonymous GL192891.1 samtools variation 857453 857453 . . . alleles " A G"; frequencies " 0.798004987531172 0.201995012468828"; depth 1203 ; known ; N/A GL192891.1 samtools variation 905092 905092 . . . alleles " C T"; frequencies " 0.440119760479042 0.559880239520958"; depth 334 ; unknown ; synonymous GL192891.1 samtools variation 905204 905204 . . . alleles " G C"; frequencies " 0.367816091954023 0.632183908045977"; depth 87 ; unknown ; non-synonymous GL192891.1 samtools variation 909958 909958 . . . alleles " C T"; frequencies " 0.372031662269129 0.627968337730871"; depth 379 ; unknown ; synonymous GL192891.1 samtools variation 910070 910070 . . . alleles " G C"; frequencies " 0.390804597701149 0.609195402298851"; depth 87 ; unknown ; non-synonymous GL192891.1 samtools variation 1040358 1040358 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192891.1 samtools variation 1041473 1041473 . . . alleles " T A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192891.1 samtools variation 1048172 1048172 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192891.1 samtools variation 1090947 1090947 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192891.1 samtools variation 1097559 1097559 . . . alleles " C A"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; known ; N/A GL192891.1 samtools variation 1100719 1100719 . . . alleles " C G"; frequencies " 0.487179487179487 0.512820512820513"; depth 273 ; known ; synonymous GL192891.1 samtools variation 1101500 1101500 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192891.1 samtools variation 1105987 1105987 . . . alleles " T G"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; known ; non-synonymous GL192891.1 samtools variation 1106045 1106045 . . . alleles " C T"; frequencies " 0.557377049180328 0.442622950819672"; depth 61 ; known ; synonymous GL192891.1 samtools variation 1107347 1107347 . . . alleles " T C"; frequencies " 0.654545454545455 0.345454545454545"; depth 55 ; known ; N/A GL192891.1 samtools variation 1110256 1110256 . . . alleles " G C"; frequencies " 0.716981132075472 0.283018867924528"; depth 53 ; known ; N/A GL192891.1 samtools variation 1110420 1110420 . . . alleles " A G"; frequencies " 0.658730158730159 0.341269841269841"; depth 126 ; known ; synonymous GL192891.1 samtools variation 1110558 1110558 . . . alleles " T C"; frequencies " 0.344497607655502 0.655502392344498"; depth 209 ; known ; synonymous GL192891.1 samtools variation 1112003 1112003 . . . alleles " A T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL192891.1 samtools variation 1113026 1113026 . . . alleles " G T"; frequencies " 0.647727272727273 0.352272727272727"; depth 264 ; known ; non-synonymous GL192891.1 samtools variation 1113066 1113066 . . . alleles " C T"; frequencies " 0.656108597285068 0.343891402714932"; depth 221 ; known ; synonymous GL192891.1 samtools variation 1114039 1114039 . . . alleles " G C"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL192891.1 samtools variation 1114440 1114440 . . . alleles " C G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192891.1 samtools variation 1114462 1114462 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL192891.1 samtools variation 1120145 1120145 . . . alleles " A G"; frequencies " 0.67816091954023 0.32183908045977"; depth 87 ; known ; N/A GL192891.1 samtools variation 1156724 1156724 . . . alleles " A G"; frequencies " 0.766990291262136 0.233009708737864"; depth 103 ; unknown ; non-synonymous GL192891.1 samtools variation 1207855 1207855 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192891.1 samtools variation 1208308 1208308 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL192891.1 samtools variation 1208377 1208377 . . . alleles " C T"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; N/A GL192891.1 samtools variation 1208726 1208726 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL192891.1 samtools variation 1208831 1208831 . . . alleles " C T"; frequencies " 0.731958762886598 0.268041237113402"; depth 97 ; unknown ; N/A GL192892.1 samtools variation 434587 434587 . . . alleles " C T"; frequencies " 0.459770114942529 0.540229885057471"; depth 261 ; known ; synonymous GL192892.1 samtools variation 449673 449673 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192892.1 samtools variation 452130 452130 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192892.1 samtools variation 459755 459755 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 60 ; known ; N/A GL192892.1 samtools variation 489603 489603 . . . alleles " G A"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; synonymous GL192892.1 samtools variation 535987 535987 . . . alleles " T A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192892.1 samtools variation 538515 538515 . . . alleles " T C"; frequencies " 0.574803149606299 0.425196850393701"; depth 127 ; known ; N/A GL192892.1 samtools variation 540187 540187 . . . alleles " G A"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192892.1 samtools variation 572218 572218 . . . alleles " A T"; frequencies " 0.671916010498688 0.328083989501312"; depth 381 ; unknown ; N/A GL192892.1 samtools variation 641497 641497 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192892.1 samtools variation 646051 646051 . . . alleles " G C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192892.1 samtools variation 693875 693875 . . . alleles " C T"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; unknown ; non-synonymous GL192892.1 samtools variation 702571 702571 . . . alleles " G A"; frequencies " 0.562790697674419 0.437209302325581"; depth 860 ; known ; N/A GL192892.1 samtools variation 705604 705604 . . . alleles " A G"; frequencies " 0.634969325153374 0.365030674846626"; depth 652 ; known ; synonymous GL192892.1 samtools variation 706497 706497 . . . alleles " C T"; frequencies " 0.787234042553192 0.212765957446809"; depth 47 ; unknown ; N/A GL192892.1 samtools variation 759899 759899 . . . alleles " T A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192892.1 samtools variation 785003 785003 . . . alleles " C T"; frequencies " 0.59375 0.40625"; depth 320 ; known ; synonymous GL192892.1 samtools variation 785647 785647 . . . alleles " C T"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; unknown ; N/A GL192892.1 samtools variation 786611 786611 . . . alleles " G A"; frequencies " 0.523994811932555 0.474708171206226"; depth 771 ; known ; synonymous GL192892.1 samtools variation 794476 794476 . . . alleles " G A"; frequencies " 0.679425837320574 0.320574162679426"; depth 418 ; known ; N/A GL192892.1 samtools variation 796934 796934 . . . alleles " A G"; frequencies " 0.303687635574837 0.696312364425163"; depth 461 ; known ; N/A GL192892.1 samtools variation 808445 808445 . . . alleles " C G"; frequencies " 0.798165137614679 0.201834862385321"; depth 109 ; unknown ; N/A GL192892.1 samtools variation 924392 924392 . . . alleles " C T"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL192892.1 samtools variation 954672 954672 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192892.1 samtools variation 963224 963224 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192892.1 samtools variation 964365 964365 . . . alleles " G C"; frequencies " 0.383529411764706 0.616470588235294"; depth 425 ; known ; N/A GL192892.1 samtools variation 977138 977138 . . . alleles " T C"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; synonymous GL192892.1 samtools variation 989278 989278 . . . alleles " A G"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; known ; N/A GL192892.1 samtools variation 994030 994030 . . . alleles " G A"; frequencies " 0.709677419354839 0.290322580645161"; depth 93 ; unknown ; N/A GL192892.1 samtools variation 996189 996189 . . . alleles " G A"; frequencies " 0.32 0.68"; depth 50 ; known ; N/A GL192892.1 samtools variation 1093896 1093896 . . . alleles " C A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192892.1 samtools variation 1141750 1141750 . . . alleles " G C"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; synonymous GL192892.1 samtools variation 1154161 1154161 . . . alleles " G A"; frequencies " 0.752066115702479 0.247933884297521"; depth 121 ; unknown ; N/A GL192892.1 samtools variation 1155839 1155839 . . . alleles " T A"; frequencies " 0.347826086956522 0.652173913043478"; depth 69 ; known ; N/A GL192892.1 samtools variation 1171523 1171523 . . . alleles " G A"; frequencies " 0.201834862385321 0.798165137614679"; depth 218 ; known ; synonymous GL192892.1 samtools variation 1191249 1191249 . . . alleles " G A"; frequencies " 0.492063492063492 0.507936507936508"; depth 189 ; known ; N/A GL192892.1 samtools variation 1191297 1191297 . . . alleles " T G"; frequencies " 0.776666666666667 0.223333333333333"; depth 300 ; known ; N/A GL192892.1 samtools variation 1205304 1205304 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192893.1 samtools variation 313448 313448 . . . alleles " G A"; frequencies " 0.760215053763441 0.239784946236559"; depth 930 ; unknown ; N/A GL192893.1 samtools variation 343837 343837 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192893.1 samtools variation 513607 513607 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192893.1 samtools variation 675067 675067 . . . alleles " A G"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; known ; synonymous GL192893.1 samtools variation 835219 835219 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192893.1 samtools variation 1206885 1206885 . . . alleles " G T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL192894.1 samtools variation 922515 922515 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 40 ; unknown ; synonymous GL192894.1 samtools variation 974285 974285 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; synonymous GL192894.1 samtools variation 981678 981678 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; non-synonymous GL192894.1 samtools variation 1004134 1004134 . . . alleles " A G"; frequencies " 0.574074074074074 0.425925925925926"; depth 54 ; known ; N/A GL192894.1 samtools variation 1067742 1067742 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192895.1 samtools variation 989505 989505 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; unknown ; N/A GL192895.1 samtools variation 989539 989539 . . . alleles " G A"; frequencies " 0.74 0.26"; depth 50 ; unknown ; non-synonymous GL192895.1 samtools variation 1046691 1046691 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; synonymous GL192895.1 samtools variation 1046760 1046760 . . . alleles " T C"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; unknown ; synonymous GL192895.1 samtools variation 1082804 1082804 . . . alleles " G A"; frequencies " 0.43859649122807 0.56140350877193"; depth 57 ; unknown ; synonymous GL192895.1 samtools variation 1082876 1082876 . . . alleles " G C"; frequencies " 0.631578947368421 0.368421052631579"; depth 95 ; unknown ; synonymous GL192895.1 samtools variation 1082957 1082957 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 88 ; unknown ; synonymous GL192895.1 samtools variation 1096205 1096205 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; unknown ; non-synonymous GL192895.1 samtools variation 1131845 1131845 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 46 ; unknown ; synonymous GL192897.1 samtools variation 267245 267245 . . . alleles " C G"; frequencies " 0.726190476190476 0.273809523809524"; depth 168 ; unknown ; N/A GL192897.1 samtools variation 268463 268463 . . . alleles " G A"; frequencies " 0.63855421686747 0.36144578313253"; depth 83 ; known ; N/A GL192897.1 samtools variation 268742 268742 . . . alleles " C A"; frequencies " 0.674698795180723 0.325301204819277"; depth 83 ; unknown ; N/A GL192897.1 samtools variation 268769 268769 . . . alleles " G A"; frequencies " 0.46969696969697 0.53030303030303"; depth 66 ; known ; N/A GL192897.1 samtools variation 268922 268922 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 126 ; unknown ; N/A GL192897.1 samtools variation 269426 269426 . . . alleles " G A"; frequencies " 0.755244755244755 0.244755244755245"; depth 143 ; unknown ; N/A GL192897.1 samtools variation 269506 269506 . . . alleles " C T"; frequencies " 0.514970059880239 0.48502994011976"; depth 167 ; known ; N/A GL192897.1 samtools variation 269661 269661 . . . alleles " T A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192897.1 samtools variation 269894 269894 . . . alleles " C G"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; unknown ; N/A GL192897.1 samtools variation 270542 270542 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 60 ; known ; N/A GL192897.1 samtools variation 270581 270581 . . . alleles " A C"; frequencies " 0.60377358490566 0.39622641509434"; depth 53 ; unknown ; N/A GL192897.1 samtools variation 271117 271117 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 70 ; known ; N/A GL192897.1 samtools variation 271159 271159 . . . alleles " C T"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; unknown ; N/A GL192897.1 samtools variation 335761 335761 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; unknown ; synonymous GL192897.1 samtools variation 1064492 1064492 . . . alleles " G A"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; synonymous GL192897.1 samtools variation 1086777 1086777 . . . alleles " A G"; frequencies " 0.291666666666667 0.708333333333333"; depth 216 ; known ; non-synonymous GL192897.1 samtools variation 1094008 1094008 . . . alleles " C T"; frequencies " 0.504504504504504 0.495495495495495"; depth 111 ; known ; synonymous GL192897.1 samtools variation 1096703 1096703 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 102 ; known ; synonymous GL192897.1 samtools variation 1096961 1096961 . . . alleles " C G"; frequencies " 0.555555555555556 0.444444444444444"; depth 126 ; known ; synonymous GL192897.1 samtools variation 1100707 1100707 . . . alleles " C T"; frequencies " 0.372340425531915 0.627659574468085"; depth 94 ; known ; synonymous GL192897.1 samtools variation 1100728 1100728 . . . alleles " T C"; frequencies " 0.323232323232323 0.676767676767677"; depth 99 ; known ; synonymous GL192897.1 samtools variation 1101547 1101547 . . . alleles " T C"; frequencies " 0.425287356321839 0.574712643678161"; depth 87 ; known ; synonymous GL192897.1 samtools variation 1101593 1101593 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 55 ; known ; non-synonymous GL192897.1 samtools variation 1102127 1102127 . . . alleles " T C"; frequencies " 0.505494505494505 0.494505494505495"; depth 91 ; known ; synonymous GL192897.1 samtools variation 1102610 1102610 . . . alleles " C T"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; non-synonymous GL192897.1 samtools variation 1103039 1103039 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192897.1 samtools variation 1103191 1103191 . . . alleles " G A"; frequencies " 0.552727272727273 0.447272727272727"; depth 275 ; known ; synonymous GL192897.1 samtools variation 1104294 1104294 . . . alleles " T C"; frequencies " 0.564705882352941 0.435294117647059"; depth 85 ; known ; synonymous GL192897.1 samtools variation 1105038 1105038 . . . alleles " T C"; frequencies " 0.471264367816092 0.528735632183908"; depth 87 ; known ; synonymous GL192897.1 samtools variation 1113863 1113863 . . . alleles " C T"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL192897.1 samtools variation 1113910 1113910 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192897.1 samtools variation 1116061 1116061 . . . alleles " T G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192897.1 samtools variation 1116163 1116163 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192897.1 samtools variation 1117332 1117332 . . . alleles " C T"; frequencies " 0.622222222222222 0.377777777777778"; depth 270 ; known ; synonymous GL192897.1 samtools variation 1117353 1117353 . . . alleles " C T"; frequencies " 0.548387096774194 0.451612903225806"; depth 186 ; known ; synonymous GL192897.1 samtools variation 1117393 1117393 . . . alleles " A G"; frequencies " 0.495145631067961 0.504854368932039"; depth 103 ; known ; non-synonymous GL192900.1 samtools variation 3751 3751 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192900.1 samtools variation 12548 12548 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192900.1 samtools variation 14621 14621 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192900.1 samtools variation 17281 17281 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 155 ; unknown ; non-synonymous GL192900.1 samtools variation 26015 26015 . . . alleles " G A"; frequencies " 0.263157894736842 0.736842105263158"; depth 95 ; unknown ; N/A GL192900.1 samtools variation 28409 28409 . . . alleles " G A"; frequencies " 0.752604166666667 0.247395833333333"; depth 384 ; known ; N/A GL192900.1 samtools variation 29432 29432 . . . alleles " C G"; frequencies " 0.306188925081433 0.693811074918567"; depth 307 ; unknown ; non-synonymous GL192900.1 samtools variation 313083 313083 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 60 ; unknown ; N/A GL192900.1 samtools variation 313164 313164 . . . alleles " C T"; frequencies " 0.620689655172414 0.379310344827586"; depth 203 ; unknown ; N/A GL192900.1 samtools variation 314022 314022 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL192900.1 samtools variation 314257 314257 . . . alleles " C G"; frequencies " 0.717948717948718 0.282051282051282"; depth 78 ; unknown ; synonymous GL192900.1 samtools variation 315704 315704 . . . alleles " C T"; frequencies " 0.317073170731707 0.682926829268293"; depth 82 ; unknown ; non-synonymous GL192900.1 samtools variation 409363 409363 . . . alleles " G C"; frequencies " 0.686746987951807 0.313253012048193"; depth 83 ; unknown ; synonymous GL192900.1 samtools variation 409660 409660 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 70 ; known ; synonymous GL192900.1 samtools variation 410222 410222 . . . alleles " G C"; frequencies " 0.527950310559006 0.472049689440994"; depth 161 ; unknown ; N/A GL192900.1 samtools variation 410223 410223 . . . alleles " G A"; frequencies " 0.527950310559006 0.472049689440994"; depth 161 ; unknown ; N/A GL192900.1 samtools variation 528456 528456 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192900.1 samtools variation 528879 528879 . . . alleles " T C"; frequencies " 0.506849315068493 0.493150684931507"; depth 73 ; unknown ; synonymous GL192900.1 samtools variation 529301 529301 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 90 ; unknown ; non-synonymous GL192900.1 samtools variation 538552 538552 . . . alleles " G T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192900.1 samtools variation 538850 538850 . . . alleles " T C"; frequencies " 0.710327455919396 0.289672544080605"; depth 397 ; unknown ; N/A GL192900.1 samtools variation 543645 543645 . . . alleles " T C"; frequencies " 0.549107142857143 0.450892857142857"; depth 224 ; unknown ; N/A GL192900.1 samtools variation 546100 546100 . . . alleles " G T"; frequencies " 0.304347826086957 0.695652173913043"; depth 92 ; unknown ; N/A GL192900.1 samtools variation 548909 548909 . . . alleles " G A"; frequencies " 0.781781376518219 0.218218623481781"; depth 2470 ; unknown ; synonymous GL192900.1 samtools variation 552232 552232 . . . alleles " T A"; frequencies " 0.650793650793651 0.349206349206349"; depth 63 ; unknown ; N/A GL192900.1 samtools variation 553038 553038 . . . alleles " A G"; frequencies " 0.662337662337662 0.337662337662338"; depth 77 ; unknown ; N/A GL192900.1 samtools variation 553162 553162 . . . alleles " A G"; frequencies " 0.450180072028812 0.549819927971189"; depth 1666 ; unknown ; synonymous GL192900.1 samtools variation 560896 560896 . . . alleles " A G"; frequencies " 0.484848484848485 0.515151515151515"; depth 66 ; known ; N/A GL192900.1 samtools variation 564417 564417 . . . alleles " C A"; frequencies " 0.55 0.45"; depth 40 ; known ; synonymous GL192900.1 samtools variation 578049 578049 . . . alleles " C T"; frequencies " 0.656140350877193 0.340350877192982"; depth 570 ; unknown ; N/A GL192900.1 samtools variation 581529 581529 . . . alleles " G A"; frequencies " 0.67965367965368 0.32034632034632"; depth 231 ; unknown ; synonymous GL192900.1 samtools variation 614615 614615 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192900.1 samtools variation 618246 618246 . . . alleles " A G"; frequencies " 0.449152542372881 0.550847457627119"; depth 118 ; unknown ; synonymous GL192900.1 samtools variation 621327 621327 . . . alleles " G T"; frequencies " 0.535714285714286 0.464285714285714"; depth 112 ; unknown ; synonymous GL192900.1 samtools variation 621938 621938 . . . alleles " A G"; frequencies " 0.644578313253012 0.355421686746988"; depth 166 ; unknown ; synonymous GL192900.1 samtools variation 622371 622371 . . . alleles " C T"; frequencies " 0.617021276595745 0.382978723404255"; depth 47 ; unknown ; synonymous GL192900.1 samtools variation 622675 622675 . . . alleles " G A"; frequencies " 0.773333333333333 0.226666666666667"; depth 75 ; unknown ; synonymous GL192900.1 samtools variation 622936 622936 . . . alleles " A G"; frequencies " 0.57 0.43"; depth 100 ; unknown ; synonymous GL192900.1 samtools variation 623120 623120 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192900.1 samtools variation 660930 660930 . . . alleles " G A"; frequencies " 0.522012578616352 0.471698113207547"; depth 159 ; known ; synonymous GL192900.1 samtools variation 661398 661398 . . . alleles " G A"; frequencies " 0.534313725490196 0.465686274509804"; depth 408 ; known ; non-synonymous GL192900.1 samtools variation 705007 705007 . . . alleles " C G"; frequencies " 0.666666666666667 0.25"; depth 12 ; known ; non-synonymous GL192900.1 samtools variation 709358 709358 . . . alleles " A G"; frequencies " 0.246998284734134 0.753001715265866"; depth 583 ; known ; N/A GL192900.1 samtools variation 709586 709586 . . . alleles " T G"; frequencies " 0.762264150943396 0.237735849056604"; depth 530 ; unknown ; N/A GL192900.1 samtools variation 711167 711167 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL192900.1 samtools variation 742960 742960 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192900.1 samtools variation 806023 806023 . . . alleles " C A"; frequencies " 0.78125 0.21875"; depth 32 ; known ; N/A GL192900.1 samtools variation 884106 884106 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 64 ; known ; N/A GL192900.1 samtools variation 884230 884230 . . . alleles " A G"; frequencies " 0.609756097560976 0.390243902439024"; depth 41 ; known ; N/A GL192900.1 samtools variation 906416 906416 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192900.1 samtools variation 949980 949980 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192900.1 samtools variation 950414 950414 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 98 ; unknown ; N/A GL192900.1 samtools variation 954042 954042 . . . alleles " T A"; frequencies " 0.238683127572016 0.761316872427984"; depth 243 ; known ; N/A GL192900.1 samtools variation 954066 954066 . . . alleles " A G"; frequencies " 0.294478527607362 0.705521472392638"; depth 163 ; known ; N/A GL192900.1 samtools variation 959777 959777 . . . alleles " A G"; frequencies " 0.594594594594595 0.405405405405405"; depth 148 ; known ; synonymous GL192900.1 samtools variation 961318 961318 . . . alleles " T G"; frequencies " 0.449017773620206 0.550046772684752"; depth 1069 ; known ; N/A GL192900.1 samtools variation 961373 961373 . . . alleles " G A"; frequencies " 0.720353982300885 0.279646017699115"; depth 1130 ; known ; N/A GL192900.1 samtools variation 962449 962449 . . . alleles " T C"; frequencies " 0.684895833333333 0.315104166666667"; depth 384 ; known ; synonymous GL192900.1 samtools variation 964115 964115 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192900.1 samtools variation 964977 964977 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192900.1 samtools variation 965843 965843 . . . alleles " T G"; frequencies " 0.232704402515723 0.767295597484277"; depth 318 ; known ; non-synonymous GL192900.1 samtools variation 1025498 1025498 . . . alleles " C T"; frequencies " 0.60573476702509 0.39426523297491"; depth 279 ; known ; synonymous GL192900.1 samtools variation 1062076 1062076 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; known ; synonymous GL192900.1 samtools variation 1068348 1068348 . . . alleles " C T"; frequencies " 0.717948717948718 0.282051282051282"; depth 117 ; known ; N/A GL192900.1 samtools variation 1078878 1078878 . . . alleles " C T"; frequencies " 0.761092150170648 0.238907849829352"; depth 293 ; unknown ; synonymous GL192900.1 samtools variation 1157259 1157259 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192901.1 samtools variation 412070 412070 . . . alleles " T C"; frequencies " 0.489690721649485 0.510309278350515"; depth 194 ; known ; non-synonymous GL192901.1 samtools variation 742952 742952 . . . alleles " A G"; frequencies " 0.581920903954802 0.418079096045198"; depth 531 ; unknown ; N/A GL192901.1 samtools variation 744180 744180 . . . alleles " A C"; frequencies " 0.678571428571429 0.321428571428571"; depth 280 ; unknown ; N/A GL192901.1 samtools variation 746750 746750 . . . alleles " G A"; frequencies " 0.700404858299595 0.299595141700405"; depth 247 ; unknown ; non-synonymous GL192901.1 samtools variation 752290 752290 . . . alleles " C T"; frequencies " 0.686274509803922 0.313725490196078"; depth 51 ; unknown ; N/A GL192901.1 samtools variation 762975 762975 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; known ; N/A GL192901.1 samtools variation 763975 763975 . . . alleles " G A"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; known ; N/A GL192901.1 samtools variation 766827 766827 . . . alleles " C T"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL192901.1 samtools variation 767609 767609 . . . alleles " G T"; frequencies " 0.72463768115942 0.260869565217391"; depth 69 ; known ; N/A GL192901.1 samtools variation 768555 768555 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL192901.1 samtools variation 796090 796090 . . . alleles " T C"; frequencies " 0.762081784386617 0.237918215613383"; depth 269 ; unknown ; synonymous GL192901.1 samtools variation 802703 802703 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192901.1 samtools variation 805531 805531 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192901.1 samtools variation 816287 816287 . . . alleles " C A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192901.1 samtools variation 819920 819920 . . . alleles " G C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192902.1 samtools variation 104568 104568 . . . alleles " T C"; frequencies " 0.673469387755102 0.326530612244898"; depth 98 ; unknown ; N/A GL192902.1 samtools variation 104605 104605 . . . alleles " C A"; frequencies " 0.732558139534884 0.267441860465116"; depth 86 ; unknown ; N/A GL192902.1 samtools variation 105759 105759 . . . alleles " T C"; frequencies " 0.723577235772358 0.276422764227642"; depth 123 ; unknown ; N/A GL192902.1 samtools variation 106030 106030 . . . alleles " C T"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL192902.1 samtools variation 106138 106138 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192902.1 samtools variation 108057 108057 . . . alleles " C T"; frequencies " 0.564102564102564 0.435897435897436"; depth 39 ; unknown ; N/A GL192902.1 samtools variation 132225 132225 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192902.1 samtools variation 214830 214830 . . . alleles " G A"; frequencies " 0.535796766743649 0.464203233256351"; depth 433 ; unknown ; N/A GL192902.1 samtools variation 215025 215025 . . . alleles " T C"; frequencies " 0.559701492537313 0.440298507462687"; depth 134 ; unknown ; N/A GL192902.1 samtools variation 217457 217457 . . . alleles " C T"; frequencies " 0.775 0.225"; depth 40 ; unknown ; N/A GL192902.1 samtools variation 218524 218524 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192902.1 samtools variation 218854 218854 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192902.1 samtools variation 221551 221551 . . . alleles " T C"; frequencies " 0.695431472081218 0.304568527918782"; depth 394 ; unknown ; synonymous GL192902.1 samtools variation 221822 221822 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192902.1 samtools variation 222397 222397 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192902.1 samtools variation 223570 223570 . . . alleles " T G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192902.1 samtools variation 224317 224317 . . . alleles " C G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192902.1 samtools variation 224451 224451 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 40 ; unknown ; N/A GL192902.1 samtools variation 224480 224480 . . . alleles " T C"; frequencies " 0.607843137254902 0.392156862745098"; depth 51 ; unknown ; N/A GL192902.1 samtools variation 892443 892443 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192902.1 samtools variation 892507 892507 . . . alleles " G T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192902.1 samtools variation 896441 896441 . . . alleles " T C"; frequencies " 0.604166666666667 0.395833333333333"; depth 48 ; unknown ; N/A GL192902.1 samtools variation 896523 896523 . . . alleles " C A"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL192902.1 samtools variation 896697 896697 . . . alleles " G A"; frequencies " 0.627118644067797 0.372881355932203"; depth 59 ; unknown ; N/A GL192902.1 samtools variation 896723 896723 . . . alleles " T C"; frequencies " 0.693333333333333 0.306666666666667"; depth 75 ; unknown ; N/A GL192902.1 samtools variation 897401 897401 . . . alleles " G T"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192902.1 samtools variation 897995 897995 . . . alleles " T C"; frequencies " 0.404761904761905 0.595238095238095"; depth 42 ; unknown ; N/A GL192902.1 samtools variation 898767 898767 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 87 ; unknown ; N/A GL192902.1 samtools variation 899569 899569 . . . alleles " C A"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL192902.1 samtools variation 902530 902530 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192902.1 samtools variation 903920 903920 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192902.1 samtools variation 905483 905483 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192902.1 samtools variation 905876 905876 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192902.1 samtools variation 906512 906512 . . . alleles " G C"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192902.1 samtools variation 907299 907299 . . . alleles " T C"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL192902.1 samtools variation 907461 907461 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192902.1 samtools variation 908805 908805 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL192902.1 samtools variation 909386 909386 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL192902.1 samtools variation 909387 909387 . . . alleles " T G"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL192902.1 samtools variation 910019 910019 . . . alleles " C T"; frequencies " 0.78698224852071 0.21301775147929"; depth 169 ; unknown ; synonymous GL192902.1 samtools variation 910046 910046 . . . alleles " G A"; frequencies " 0.776223776223776 0.223776223776224"; depth 143 ; unknown ; synonymous GL192902.1 samtools variation 910362 910362 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 40 ; unknown ; non-synonymous GL192902.1 samtools variation 912309 912309 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192902.1 samtools variation 925551 925551 . . . alleles " T C"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192902.1 samtools variation 931552 931552 . . . alleles " C G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192902.1 samtools variation 933050 933050 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192902.1 samtools variation 933064 933064 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL192902.1 samtools variation 941938 941938 . . . alleles " G T"; frequencies " 0.706319702602231 0.29368029739777"; depth 269 ; unknown ; N/A GL192902.1 samtools variation 942006 942006 . . . alleles " C A"; frequencies " 0.661654135338346 0.338345864661654"; depth 133 ; unknown ; N/A GL192902.1 samtools variation 971287 971287 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192902.1 samtools variation 971293 971293 . . . alleles " T G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192902.1 samtools variation 971790 971790 . . . alleles " A T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192902.1 samtools variation 986254 986254 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192902.1 samtools variation 1163027 1163027 . . . alleles " C T"; frequencies " 0.392 0.608"; depth 125 ; unknown ; non-synonymous GL192902.1 samtools variation 1163413 1163413 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192903.1 samtools variation 926741 926741 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192903.1 samtools variation 927432 927432 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL192903.1 samtools variation 927483 927483 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192903.1 samtools variation 927510 927510 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192903.1 samtools variation 927654 927654 . . . alleles " C G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192903.1 samtools variation 927655 927655 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192903.1 samtools variation 958641 958641 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192903.1 samtools variation 958754 958754 . . . alleles " G C"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192903.1 samtools variation 959789 959789 . . . alleles " G A"; frequencies " 0.252577319587629 0.747422680412371"; depth 194 ; known ; N/A GL192903.1 samtools variation 960371 960371 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192903.1 samtools variation 1092845 1092845 . . . alleles " G T"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; unknown ; N/A GL192903.1 samtools variation 1093538 1093538 . . . alleles " G A"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; unknown ; N/A GL192903.1 samtools variation 1095319 1095319 . . . alleles " C T"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL192903.1 samtools variation 1095759 1095759 . . . alleles " A T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL192903.1 samtools variation 1096388 1096388 . . . alleles " C T"; frequencies " 0.304347826086957 0.695652173913043"; depth 69 ; unknown ; synonymous GL192903.1 samtools variation 1099039 1099039 . . . alleles " G C"; frequencies " 0.351851851851852 0.648148148148148"; depth 54 ; unknown ; N/A GL192903.1 samtools variation 1099071 1099071 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 42 ; known ; N/A GL192903.1 samtools variation 1103068 1103068 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192904.1 samtools variation 1079292 1079292 . . . alleles " T C"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL192905.1 samtools variation 80460 80460 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192905.1 samtools variation 91531 91531 . . . alleles " C T"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; unknown ; N/A GL192905.1 samtools variation 93582 93582 . . . alleles " C T"; frequencies " 0.348837209302326 0.651162790697674"; depth 43 ; unknown ; N/A GL192905.1 samtools variation 96390 96390 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 48 ; known ; synonymous GL192905.1 samtools variation 97979 97979 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; synonymous GL192905.1 samtools variation 115390 115390 . . . alleles " A G"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL192905.1 samtools variation 136895 136895 . . . alleles " C A"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL192905.1 samtools variation 137154 137154 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 90 ; unknown ; N/A GL192905.1 samtools variation 138215 138215 . . . alleles " T C"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192905.1 samtools variation 138445 138445 . . . alleles " A G"; frequencies " 0.303030303030303 0.696969696969697"; depth 33 ; known ; N/A GL192905.1 samtools variation 149417 149417 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; non-synonymous GL192905.1 samtools variation 149641 149641 . . . alleles " G T"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; synonymous GL192905.1 samtools variation 157616 157616 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; synonymous GL192905.1 samtools variation 162272 162272 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; synonymous GL192905.1 samtools variation 721258 721258 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192905.1 samtools variation 721348 721348 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192905.1 samtools variation 961238 961238 . . . alleles " A G"; frequencies " 0.303030303030303 0.696969696969697"; depth 33 ; unknown ; N/A GL192905.1 samtools variation 961968 961968 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL192905.1 samtools variation 962370 962370 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192905.1 samtools variation 962397 962397 . . . alleles " T C"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192906.1 samtools variation 690339 690339 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192906.1 samtools variation 889547 889547 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192906.1 samtools variation 920956 920956 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 220 ; known ; N/A GL192907.1 samtools variation 83725 83725 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192907.1 samtools variation 84401 84401 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL192907.1 samtools variation 84660 84660 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192907.1 samtools variation 85379 85379 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192908.1 samtools variation 156262 156262 . . . alleles " G C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192908.1 samtools variation 158077 158077 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192908.1 samtools variation 194032 194032 . . . alleles " C T"; frequencies " 0.460674157303371 0.539325842696629"; depth 89 ; unknown ; N/A GL192908.1 samtools variation 195389 195389 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 100 ; known ; N/A GL192908.1 samtools variation 220765 220765 . . . alleles " G A"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL192908.1 samtools variation 221430 221430 . . . alleles " G C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL192908.1 samtools variation 437606 437606 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192908.1 samtools variation 510877 510877 . . . alleles " G A"; frequencies " 0.474683544303797 0.525316455696203"; depth 158 ; known ; N/A GL192908.1 samtools variation 545571 545571 . . . alleles " T C"; frequencies " 0.621212121212121 0.378787878787879"; depth 132 ; known ; non-synonymous GL192908.1 samtools variation 546088 546088 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 70 ; unknown ; non-synonymous GL192908.1 samtools variation 613430 613430 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL192908.1 samtools variation 888015 888015 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192908.1 samtools variation 960144 960144 . . . alleles " G C"; frequencies " 0.590163934426229 0.409836065573771"; depth 61 ; unknown ; N/A GL192908.1 samtools variation 1047605 1047605 . . . alleles " T G"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192908.1 samtools variation 1048053 1048053 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 154 ; known ; N/A GL192908.1 samtools variation 1048136 1048136 . . . alleles " T C"; frequencies " 0.754545454545455 0.245454545454545"; depth 110 ; known ; N/A GL192908.1 samtools variation 1052086 1052086 . . . alleles " A G"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL192908.1 samtools variation 1052349 1052349 . . . alleles " G A"; frequencies " 0.205882352941176 0.794117647058823"; depth 34 ; known ; N/A GL192908.1 samtools variation 1056881 1056881 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192908.1 samtools variation 1056923 1056923 . . . alleles " T A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192908.1 samtools variation 1120243 1120243 . . . alleles " C T"; frequencies " 0.75187969924812 0.24812030075188"; depth 133 ; known ; non-synonymous GL192908.1 samtools variation 1126820 1126820 . . . alleles " G A"; frequencies " 0.422222222222222 0.577777777777778"; depth 45 ; unknown ; synonymous GL192908.1 samtools variation 1153218 1153218 . . . alleles " G A"; frequencies " 0.604166666666667 0.395833333333333"; depth 48 ; unknown ; N/A GL192908.1 samtools variation 1161980 1161980 . . . alleles " C A"; frequencies " 0.568181818181818 0.431818181818182"; depth 44 ; unknown ; N/A GL192908.1 samtools variation 1162761 1162761 . . . alleles " C T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; known ; N/A GL192908.1 samtools variation 1168011 1168011 . . . alleles " C T"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL192909.1 samtools variation 51346 51346 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192909.1 samtools variation 52188 52188 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192909.1 samtools variation 71280 71280 . . . alleles " G A"; frequencies " 0.661016949152542 0.338983050847458"; depth 59 ; unknown ; non-synonymous GL192909.1 samtools variation 990778 990778 . . . alleles " T G"; frequencies " 0.653902798232695 0.346097201767305"; depth 679 ; known ; non-synonymous GL192909.1 samtools variation 990937 990937 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192909.1 samtools variation 993260 993260 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 68 ; known ; N/A GL192909.1 samtools variation 993386 993386 . . . alleles " C A"; frequencies " 0.553191489361702 0.446808510638298"; depth 47 ; known ; N/A GL192909.1 samtools variation 993886 993886 . . . alleles " A T"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192909.1 samtools variation 994544 994544 . . . alleles " T G"; frequencies " 0.244444444444444 0.755555555555556"; depth 45 ; known ; N/A GL192909.1 samtools variation 994558 994558 . . . alleles " G T"; frequencies " 0.276595744680851 0.723404255319149"; depth 47 ; known ; N/A GL192909.1 samtools variation 994628 994628 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; known ; N/A GL192909.1 samtools variation 994670 994670 . . . alleles " A G"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; known ; N/A GL192909.1 samtools variation 994722 994722 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192909.1 samtools variation 994825 994825 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 38 ; unknown ; synonymous GL192909.1 samtools variation 995024 995024 . . . alleles " G A"; frequencies " 0.21505376344086 0.78494623655914"; depth 93 ; known ; non-synonymous GL192909.1 samtools variation 995894 995894 . . . alleles " C A"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL192909.1 samtools variation 995991 995991 . . . alleles " A T"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; known ; N/A GL192909.1 samtools variation 996076 996076 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192909.1 samtools variation 996631 996631 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; N/A GL192909.1 samtools variation 996873 996873 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; known ; N/A GL192909.1 samtools variation 997744 997744 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192909.1 samtools variation 998387 998387 . . . alleles " A G"; frequencies " 0.372549019607843 0.627450980392157"; depth 51 ; known ; N/A GL192909.1 samtools variation 998446 998446 . . . alleles " C G"; frequencies " 0.612244897959184 0.387755102040816"; depth 49 ; known ; N/A GL192909.1 samtools variation 998725 998725 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192909.1 samtools variation 999576 999576 . . . alleles " T C"; frequencies " 0.358056265984655 0.641943734015345"; depth 391 ; known ; non-synonymous GL192909.1 samtools variation 1000901 1000901 . . . alleles " T C"; frequencies " 0.701421800947867 0.298578199052133"; depth 844 ; known ; synonymous GL192909.1 samtools variation 1001208 1001208 . . . alleles " G T"; frequencies " 0.328214971209213 0.671785028790787"; depth 521 ; known ; N/A GL192909.1 samtools variation 1001437 1001437 . . . alleles " G A"; frequencies " 0.310077519379845 0.689922480620155"; depth 258 ; known ; N/A GL192909.1 samtools variation 1002452 1002452 . . . alleles " C T"; frequencies " 0.493333333333333 0.506666666666667"; depth 75 ; known ; N/A GL192909.1 samtools variation 1003021 1003021 . . . alleles " A G"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; known ; N/A GL192909.1 samtools variation 1003117 1003117 . . . alleles " G T"; frequencies " 0.459016393442623 0.540983606557377"; depth 61 ; known ; N/A GL192909.1 samtools variation 1004197 1004197 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192909.1 samtools variation 1004485 1004485 . . . alleles " G T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192909.1 samtools variation 1004616 1004616 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192909.1 samtools variation 1005234 1005234 . . . alleles " C T"; frequencies " 0.572992700729927 0.427007299270073"; depth 274 ; known ; N/A GL192909.1 samtools variation 1005255 1005255 . . . alleles " C T"; frequencies " 0.765151515151515 0.234848484848485"; depth 264 ; unknown ; N/A GL192909.1 samtools variation 1005793 1005793 . . . alleles " G T"; frequencies " 0.674074074074074 0.325925925925926"; depth 270 ; unknown ; N/A GL192909.1 samtools variation 1006598 1006598 . . . alleles " G T"; frequencies " 0.553254437869823 0.446745562130178"; depth 338 ; unknown ; N/A GL192909.1 samtools variation 1021206 1021206 . . . alleles " T C"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL192909.1 samtools variation 1021237 1021237 . . . alleles " C T"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL192909.1 samtools variation 1021812 1021812 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 56 ; known ; N/A GL192909.1 samtools variation 1027507 1027507 . . . alleles " A G"; frequencies " 0.566037735849057 0.433962264150943"; depth 106 ; unknown ; non-synonymous GL192909.1 samtools variation 1027579 1027579 . . . alleles " A C"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL192909.1 samtools variation 1027692 1027692 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL192909.1 samtools variation 1028421 1028421 . . . alleles " G C"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192909.1 samtools variation 1028423 1028423 . . . alleles " C A"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL192909.1 samtools variation 1029118 1029118 . . . alleles " C A"; frequencies " 0.484848484848485 0.515151515151515"; depth 99 ; unknown ; N/A GL192909.1 samtools variation 1029121 1029121 . . . alleles " T C"; frequencies " 0.480392156862745 0.519607843137255"; depth 102 ; unknown ; N/A GL192909.1 samtools variation 1029277 1029277 . . . alleles " T C"; frequencies " 0.535714285714286 0.464285714285714"; depth 224 ; unknown ; synonymous GL192909.1 samtools variation 1030033 1030033 . . . alleles " C T"; frequencies " 0.494071146245059 0.505928853754941"; depth 253 ; unknown ; synonymous GL192909.1 samtools variation 1030078 1030078 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 210 ; unknown ; synonymous GL192909.1 samtools variation 1030114 1030114 . . . alleles " T C"; frequencies " 0.373134328358209 0.626865671641791"; depth 134 ; known ; synonymous GL192909.1 samtools variation 1030432 1030432 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; unknown ; N/A GL192909.1 samtools variation 1031330 1031330 . . . alleles " A G"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL192909.1 samtools variation 1032301 1032301 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192909.1 samtools variation 1032363 1032363 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192909.1 samtools variation 1032509 1032509 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192909.1 samtools variation 1032538 1032538 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL192909.1 samtools variation 1032708 1032708 . . . alleles " G C"; frequencies " 0.416666666666667 0.583333333333333"; depth 48 ; unknown ; N/A GL192909.1 samtools variation 1032833 1032833 . . . alleles " A C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192909.1 samtools variation 1033281 1033281 . . . alleles " C T"; frequencies " 0.521235521235521 0.478764478764479"; depth 259 ; unknown ; non-synonymous GL192909.1 samtools variation 1033567 1033567 . . . alleles " C A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192909.1 samtools variation 1034513 1034513 . . . alleles " T C"; frequencies " 0.244897959183673 0.755102040816326"; depth 49 ; unknown ; N/A GL192909.1 samtools variation 1037238 1037238 . . . alleles " A C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192909.1 samtools variation 1037279 1037279 . . . alleles " C T"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL192909.1 samtools variation 1037371 1037371 . . . alleles " G A"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL192910.1 samtools variation 248437 248437 . . . alleles " A T"; frequencies " 0.742857142857143 0.257142857142857"; depth 70 ; unknown ; synonymous GL192910.1 samtools variation 253823 253823 . . . alleles " C G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192910.1 samtools variation 255300 255300 . . . alleles " C T"; frequencies " 0.623188405797101 0.376811594202899"; depth 69 ; unknown ; N/A GL192910.1 samtools variation 255510 255510 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192910.1 samtools variation 260837 260837 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192910.1 samtools variation 317439 317439 . . . alleles " C T"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL192910.1 samtools variation 397073 397073 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; non-synonymous GL192910.1 samtools variation 397568 397568 . . . alleles " T C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; non-synonymous GL192910.1 samtools variation 604767 604767 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 95 ; known ; N/A GL192910.1 samtools variation 609723 609723 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; synonymous GL192911.1 samtools variation 2206 2206 . . . alleles " A C"; frequencies " 0.64 0.36"; depth 50 ; unknown ; N/A GL192911.1 samtools variation 289049 289049 . . . alleles " C T"; frequencies " 0.72289156626506 0.27710843373494"; depth 83 ; unknown ; synonymous GL192911.1 samtools variation 289186 289186 . . . alleles " A C"; frequencies " 0.686274509803922 0.313725490196078"; depth 153 ; unknown ; non-synonymous GL192911.1 samtools variation 289465 289465 . . . alleles " T C"; frequencies " 0.604166666666667 0.395833333333333"; depth 48 ; unknown ; N/A GL192911.1 samtools variation 289863 289863 . . . alleles " A C"; frequencies " 0.331034482758621 0.668965517241379"; depth 145 ; known ; N/A GL192911.1 samtools variation 379040 379040 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; known ; synonymous GL192911.1 samtools variation 388204 388204 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL192911.1 samtools variation 447127 447127 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192911.1 samtools variation 458163 458163 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL192911.1 samtools variation 460553 460553 . . . alleles " T G"; frequencies " 0.735632183908046 0.264367816091954"; depth 87 ; unknown ; N/A GL192911.1 samtools variation 460860 460860 . . . alleles " C T"; frequencies " 0.303030303030303 0.696969696969697"; depth 66 ; known ; N/A GL192911.1 samtools variation 465440 465440 . . . alleles " C A"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192911.1 samtools variation 465918 465918 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192911.1 samtools variation 483103 483103 . . . alleles " C T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; known ; synonymous GL192911.1 samtools variation 523642 523642 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL192911.1 samtools variation 525253 525253 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 25 ; known ; N/A GL192911.1 samtools variation 525307 525307 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192911.1 samtools variation 738901 738901 . . . alleles " G A"; frequencies " 0.775510204081633 0.224489795918367"; depth 98 ; unknown ; synonymous GL192911.1 samtools variation 739378 739378 . . . alleles " C A"; frequencies " 0.25 0.75"; depth 92 ; known ; synonymous GL192911.1 samtools variation 743422 743422 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192911.1 samtools variation 743878 743878 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; known ; N/A GL192911.1 samtools variation 1125534 1125534 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192912.1 samtools variation 217946 217946 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; synonymous GL192912.1 samtools variation 218264 218264 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; synonymous GL192912.1 samtools variation 218285 218285 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 24 ; unknown ; synonymous GL192912.1 samtools variation 219014 219014 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; synonymous GL192912.1 samtools variation 219296 219296 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; synonymous GL192912.1 samtools variation 259755 259755 . . . alleles " C G"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL192912.1 samtools variation 259889 259889 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192912.1 samtools variation 259897 259897 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192912.1 samtools variation 260660 260660 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; known ; N/A GL192912.1 samtools variation 261042 261042 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192912.1 samtools variation 261396 261396 . . . alleles " G A"; frequencies " 0.292035398230089 0.707964601769911"; depth 226 ; known ; N/A GL192912.1 samtools variation 261657 261657 . . . alleles " G A"; frequencies " 0.335616438356164 0.664383561643836"; depth 146 ; known ; N/A GL192912.1 samtools variation 261666 261666 . . . alleles " C T"; frequencies " 0.343949044585987 0.656050955414013"; depth 157 ; known ; N/A GL192912.1 samtools variation 261788 261788 . . . alleles " C T"; frequencies " 0.788732394366197 0.211267605633803"; depth 142 ; unknown ; N/A GL192912.1 samtools variation 261948 261948 . . . alleles " T C"; frequencies " 0.325688073394495 0.674311926605505"; depth 218 ; known ; N/A GL192912.1 samtools variation 262145 262145 . . . alleles " C A"; frequencies " 0.712041884816754 0.287958115183246"; depth 191 ; known ; non-synonymous GL192912.1 samtools variation 262296 262296 . . . alleles " G A"; frequencies " 0.645833333333333 0.354166666666667"; depth 96 ; known ; synonymous GL192912.1 samtools variation 262548 262548 . . . alleles " T C"; frequencies " 0.779487179487179 0.220512820512821"; depth 195 ; known ; synonymous GL192912.1 samtools variation 262710 262710 . . . alleles " C T"; frequencies " 0.264214046822742 0.735785953177257"; depth 299 ; known ; synonymous GL192912.1 samtools variation 262769 262769 . . . alleles " C T"; frequencies " 0.69811320754717 0.297169811320755"; depth 212 ; known ; non-synonymous GL192912.1 samtools variation 263580 263580 . . . alleles " G A"; frequencies " 0.78030303030303 0.21969696969697"; depth 132 ; unknown ; synonymous GL192912.1 samtools variation 264769 264769 . . . alleles " T C"; frequencies " 0.277777777777778 0.722222222222222"; depth 126 ; known ; N/A GL192912.1 samtools variation 264876 264876 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 72 ; known ; N/A GL192912.1 samtools variation 265076 265076 . . . alleles " A C"; frequencies " 0.53125 0.46875"; depth 32 ; known ; N/A GL192912.1 samtools variation 265271 265271 . . . alleles " C T"; frequencies " 0.775862068965517 0.224137931034483"; depth 58 ; unknown ; N/A GL192912.1 samtools variation 265629 265629 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192912.1 samtools variation 269303 269303 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192912.1 samtools variation 270295 270295 . . . alleles " A C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192912.1 samtools variation 270344 270344 . . . alleles " C T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL192912.1 samtools variation 271111 271111 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 50 ; unknown ; N/A GL192912.1 samtools variation 271308 271308 . . . alleles " T C"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL192912.1 samtools variation 271329 271329 . . . alleles " A G"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL192912.1 samtools variation 271374 271374 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 35 ; unknown ; N/A GL192912.1 samtools variation 271784 271784 . . . alleles " A C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192912.1 samtools variation 273345 273345 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192912.1 samtools variation 273509 273509 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192912.1 samtools variation 273696 273696 . . . alleles " G A"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL192912.1 samtools variation 273943 273943 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192912.1 samtools variation 554369 554369 . . . alleles " G A"; frequencies " 0.504347826086956 0.495652173913044"; depth 115 ; unknown ; synonymous GL192912.1 samtools variation 555444 555444 . . . alleles " G A"; frequencies " 0.44559585492228 0.55440414507772"; depth 193 ; unknown ; synonymous GL192912.1 samtools variation 557173 557173 . . . alleles " C T"; frequencies " 0.421875 0.578125"; depth 64 ; unknown ; N/A GL192912.1 samtools variation 560369 560369 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192912.1 samtools variation 560733 560733 . . . alleles " G A"; frequencies " 0.484764542936288 0.515235457063712"; depth 361 ; unknown ; synonymous GL192912.1 samtools variation 562454 562454 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192912.1 samtools variation 563166 563166 . . . alleles " G A"; frequencies " 0.58 0.42"; depth 50 ; unknown ; N/A GL192912.1 samtools variation 563247 563247 . . . alleles " A G"; frequencies " 0.530769230769231 0.469230769230769"; depth 260 ; unknown ; synonymous GL192912.1 samtools variation 563316 563316 . . . alleles " A C"; frequencies " 0.482035928143713 0.514970059880239"; depth 334 ; unknown ; synonymous GL192912.1 samtools variation 566173 566173 . . . alleles " T G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192912.1 samtools variation 571320 571320 . . . alleles " A G"; frequencies " 0.356521739130435 0.643478260869565"; depth 460 ; unknown ; N/A GL192912.1 samtools variation 571444 571444 . . . alleles " C G"; frequencies " 0.54639175257732 0.45360824742268"; depth 582 ; unknown ; N/A GL192912.1 samtools variation 571654 571654 . . . alleles " C T"; frequencies " 0.305660377358491 0.694339622641509"; depth 265 ; unknown ; N/A GL192912.1 samtools variation 571751 571751 . . . alleles " A G"; frequencies " 0.314356435643564 0.685643564356436"; depth 404 ; unknown ; N/A GL192912.1 samtools variation 572109 572109 . . . alleles " A C"; frequencies " 0.493150684931507 0.506849315068493"; depth 146 ; unknown ; N/A GL192912.1 samtools variation 575518 575518 . . . alleles " G A"; frequencies " 0.592592592592593 0.407407407407407"; depth 54 ; known ; N/A GL192912.1 samtools variation 575730 575730 . . . alleles " C T"; frequencies " 0.504504504504504 0.495495495495495"; depth 111 ; unknown ; N/A GL192912.1 samtools variation 575823 575823 . . . alleles " G A"; frequencies " 0.693548387096774 0.306451612903226"; depth 124 ; unknown ; N/A GL192912.1 samtools variation 578397 578397 . . . alleles " C A"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; known ; N/A GL192912.1 samtools variation 578726 578726 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192912.1 samtools variation 578734 578734 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192912.1 samtools variation 578821 578821 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192912.1 samtools variation 579401 579401 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192912.1 samtools variation 580351 580351 . . . alleles " A G"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL192912.1 samtools variation 580709 580709 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192912.1 samtools variation 581529 581529 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192912.1 samtools variation 582261 582261 . . . alleles " C A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; known ; N/A GL192912.1 samtools variation 587405 587405 . . . alleles " T G"; frequencies " 0.764705882352941 0.235294117647059"; depth 51 ; known ; non-synonymous GL192912.1 samtools variation 587431 587431 . . . alleles " C T"; frequencies " 0.764705882352941 0.220588235294118"; depth 68 ; known ; synonymous GL192912.1 samtools variation 587674 587674 . . . alleles " G A"; frequencies " 0.504 0.496"; depth 125 ; unknown ; synonymous GL192912.1 samtools variation 592437 592437 . . . alleles " C G"; frequencies " 0.377777777777778 0.622222222222222"; depth 180 ; known ; non-synonymous GL192912.1 samtools variation 592565 592565 . . . alleles " G A"; frequencies " 0.445378151260504 0.554621848739496"; depth 119 ; unknown ; non-synonymous GL192912.1 samtools variation 594504 594504 . . . alleles " A T"; frequencies " 0.526315789473684 0.473684210526316"; depth 57 ; unknown ; synonymous GL192912.1 samtools variation 596040 596040 . . . alleles " C T"; frequencies " 0.567901234567901 0.432098765432099"; depth 81 ; unknown ; synonymous GL192912.1 samtools variation 596157 596157 . . . alleles " C T"; frequencies " 0.534246575342466 0.465753424657534"; depth 73 ; unknown ; synonymous GL192912.1 samtools variation 684713 684713 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192912.1 samtools variation 719104 719104 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192912.1 samtools variation 739740 739740 . . . alleles " C G"; frequencies " 0.691358024691358 0.308641975308642"; depth 81 ; known ; synonymous GL192912.1 samtools variation 804809 804809 . . . alleles " A G"; frequencies " 0.483333333333333 0.516666666666667"; depth 60 ; known ; synonymous GL192912.1 samtools variation 807912 807912 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; synonymous GL192912.1 samtools variation 891778 891778 . . . alleles " A C"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL192912.1 samtools variation 893053 893053 . . . alleles " T C"; frequencies " 0.387387387387387 0.612612612612613"; depth 111 ; known ; N/A GL192912.1 samtools variation 893563 893563 . . . alleles " C T"; frequencies " 0.780058651026393 0.219941348973607"; depth 341 ; unknown ; N/A GL192912.1 samtools variation 922654 922654 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 51 ; unknown ; N/A GL192912.1 samtools variation 951330 951330 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192913.1 samtools variation 627973 627973 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192913.1 samtools variation 675360 675360 . . . alleles " G A"; frequencies " 0.71830985915493 0.28169014084507"; depth 71 ; unknown ; N/A GL192914.1 samtools variation 509617 509617 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192914.1 samtools variation 546848 546848 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192914.1 samtools variation 577570 577570 . . . alleles " T G"; frequencies " 0.566176470588235 0.433823529411765"; depth 136 ; unknown ; synonymous GL192914.1 samtools variation 581771 581771 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192914.1 samtools variation 587690 587690 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192914.1 samtools variation 591605 591605 . . . alleles " G A"; frequencies " 0.548507462686567 0.451492537313433"; depth 268 ; unknown ; N/A GL192914.1 samtools variation 592265 592265 . . . alleles " T C"; frequencies " 0.420091324200913 0.579908675799087"; depth 219 ; unknown ; N/A GL192914.1 samtools variation 592646 592646 . . . alleles " C T"; frequencies " 0.426229508196721 0.573770491803279"; depth 61 ; unknown ; N/A GL192914.1 samtools variation 641491 641491 . . . alleles " A G"; frequencies " 0.756410256410256 0.243589743589744"; depth 78 ; unknown ; N/A GL192914.1 samtools variation 663420 663420 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 45 ; unknown ; N/A GL192914.1 samtools variation 664382 664382 . . . alleles " C G"; frequencies " 0.242424242424242 0.727272727272727"; depth 33 ; unknown ; N/A GL192914.1 samtools variation 664553 664553 . . . alleles " T A"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; unknown ; N/A GL192914.1 samtools variation 789644 789644 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192914.1 samtools variation 802417 802417 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192914.1 samtools variation 804446 804446 . . . alleles " G T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192914.1 samtools variation 805438 805438 . . . alleles " C T"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; unknown ; N/A GL192914.1 samtools variation 805730 805730 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192914.1 samtools variation 805756 805756 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192914.1 samtools variation 806239 806239 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 96 ; unknown ; N/A GL192914.1 samtools variation 806943 806943 . . . alleles " T C"; frequencies " 0.346938775510204 0.653061224489796"; depth 98 ; known ; N/A GL192914.1 samtools variation 807691 807691 . . . alleles " C G"; frequencies " 0.733333333333333 0.266666666666667"; depth 60 ; unknown ; N/A GL192914.1 samtools variation 808872 808872 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192914.1 samtools variation 809736 809736 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192914.1 samtools variation 819064 819064 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 56 ; unknown ; N/A GL192914.1 samtools variation 873049 873049 . . . alleles " A G"; frequencies " 0.702127659574468 0.297872340425532"; depth 94 ; unknown ; N/A GL192914.1 samtools variation 873349 873349 . . . alleles " C T"; frequencies " 0.670103092783505 0.329896907216495"; depth 97 ; unknown ; N/A GL192914.1 samtools variation 1068252 1068252 . . . alleles " C T"; frequencies " 0.527777777777778 0.472222222222222"; depth 108 ; unknown ; N/A GL192914.1 samtools variation 1073102 1073102 . . . alleles " C T"; frequencies " 0.649789029535865 0.350210970464135"; depth 237 ; unknown ; synonymous GL192914.1 samtools variation 1075202 1075202 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 299 ; unknown ; synonymous GL192914.1 samtools variation 1082393 1082393 . . . alleles " A G"; frequencies " 0.608856088560886 0.391143911439114"; depth 271 ; unknown ; N/A GL192914.1 samtools variation 1082416 1082416 . . . alleles " A G"; frequencies " 0.624137931034483 0.375862068965517"; depth 290 ; unknown ; N/A GL192914.1 samtools variation 1082521 1082521 . . . alleles " G C"; frequencies " 0.687782805429864 0.312217194570136"; depth 221 ; unknown ; N/A GL192914.1 samtools variation 1082556 1082556 . . . alleles " G A"; frequencies " 0.686567164179104 0.313432835820896"; depth 201 ; unknown ; N/A GL192914.1 samtools variation 1082600 1082600 . . . alleles " C T"; frequencies " 0.663865546218487 0.336134453781513"; depth 238 ; unknown ; N/A GL192914.1 samtools variation 1112922 1112922 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192914.1 samtools variation 1121168 1121168 . . . alleles " T G"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL192914.1 samtools variation 1129539 1129539 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192914.1 samtools variation 1140255 1140255 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192914.1 samtools variation 1140683 1140683 . . . alleles " G A"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192914.1 samtools variation 1143556 1143556 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 84 ; known ; synonymous GL192914.1 samtools variation 1143655 1143655 . . . alleles " C T"; frequencies " 0.307142857142857 0.692857142857143"; depth 140 ; known ; synonymous GL192914.1 samtools variation 1145448 1145448 . . . alleles " A T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192914.1 samtools variation 1146128 1146128 . . . alleles " C G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192914.1 samtools variation 1146308 1146308 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192914.1 samtools variation 1146320 1146320 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192914.1 samtools variation 1147385 1147385 . . . alleles " C T"; frequencies " 0.718518518518519 0.281481481481481"; depth 135 ; unknown ; synonymous GL192914.1 samtools variation 1152373 1152373 . . . alleles " T A"; frequencies " 0.304878048780488 0.695121951219512"; depth 164 ; known ; N/A GL192914.1 samtools variation 1152410 1152410 . . . alleles " C T"; frequencies " 0.691428571428571 0.308571428571429"; depth 175 ; unknown ; N/A GL192914.1 samtools variation 1152633 1152633 . . . alleles " G C"; frequencies " 0.72463768115942 0.27536231884058"; depth 138 ; known ; N/A GL192914.1 samtools variation 1155197 1155197 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192915.1 samtools variation 365244 365244 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; synonymous GL192915.1 samtools variation 1110622 1110622 . . . alleles " T A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192915.1 samtools variation 1114374 1114374 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 32 ; known ; synonymous GL192915.1 samtools variation 1122907 1122907 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; non-synonymous GL192915.1 samtools variation 1122912 1122912 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; known ; non-synonymous GL192915.1 samtools variation 1139430 1139430 . . . alleles " T C"; frequencies " 0.584905660377358 0.415094339622642"; depth 53 ; unknown ; synonymous GL192916.1 samtools variation 336315 336315 . . . alleles " T C"; frequencies " 0.584905660377358 0.415094339622642"; depth 53 ; unknown ; synonymous GL192916.1 samtools variation 362742 362742 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192916.1 samtools variation 363095 363095 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192917.1 samtools variation 681114 681114 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192917.1 samtools variation 682168 682168 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192917.1 samtools variation 715028 715028 . . . alleles " G A"; frequencies " 0.21875 0.78125"; depth 96 ; known ; N/A GL192917.1 samtools variation 743835 743835 . . . alleles " C A"; frequencies " 0.661538461538462 0.338461538461538"; depth 65 ; unknown ; N/A GL192917.1 samtools variation 847308 847308 . . . alleles " C T"; frequencies " 0.683083511777302 0.316916488222698"; depth 467 ; unknown ; synonymous GL192918.1 samtools variation 1161130 1161130 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192919.1 samtools variation 32802 32802 . . . alleles " G A"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL192919.1 samtools variation 32838 32838 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL192919.1 samtools variation 33851 33851 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; N/A GL192919.1 samtools variation 46288 46288 . . . alleles " C A"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; unknown ; N/A GL192919.1 samtools variation 46865 46865 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL192919.1 samtools variation 119154 119154 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192919.1 samtools variation 119457 119457 . . . alleles " T G"; frequencies " 0.490566037735849 0.509433962264151"; depth 53 ; known ; non-synonymous GL192919.1 samtools variation 119850 119850 . . . alleles " T G"; frequencies " 0.613333333333333 0.386666666666667"; depth 75 ; unknown ; non-synonymous GL192919.1 samtools variation 120425 120425 . . . alleles " G A"; frequencies " 0.786885245901639 0.213114754098361"; depth 61 ; unknown ; non-synonymous GL192919.1 samtools variation 126392 126392 . . . alleles " C T"; frequencies " 0.523809523809524 0.476190476190476"; depth 168 ; known ; non-synonymous GL192919.1 samtools variation 160211 160211 . . . alleles " G A"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; synonymous GL192919.1 samtools variation 160237 160237 . . . alleles " C G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; non-synonymous GL192919.1 samtools variation 160265 160265 . . . alleles " G A"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; synonymous GL192919.1 samtools variation 160365 160365 . . . alleles " T C"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL192919.1 samtools variation 160493 160493 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 30 ; known ; N/A GL192919.1 samtools variation 160702 160702 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL192919.1 samtools variation 160758 160758 . . . alleles " C T"; frequencies " 0.34375 0.65625"; depth 32 ; known ; N/A GL192919.1 samtools variation 160791 160791 . . . alleles " T C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192919.1 samtools variation 160908 160908 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL192919.1 samtools variation 160927 160927 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192919.1 samtools variation 161005 161005 . . . alleles " T C"; frequencies " 0.540540540540541 0.459459459459459"; depth 37 ; known ; N/A GL192919.1 samtools variation 161045 161045 . . . alleles " A G"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL192919.1 samtools variation 162852 162852 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL192919.1 samtools variation 360768 360768 . . . alleles " C T"; frequencies " 0.313253012048193 0.686746987951807"; depth 83 ; known ; N/A GL192919.1 samtools variation 360968 360968 . . . alleles " C T"; frequencies " 0.388059701492537 0.611940298507463"; depth 67 ; known ; N/A GL192919.1 samtools variation 360997 360997 . . . alleles " A G"; frequencies " 0.404761904761905 0.595238095238095"; depth 84 ; known ; N/A GL192919.1 samtools variation 375579 375579 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192919.1 samtools variation 431257 431257 . . . alleles " G T"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192919.1 samtools variation 469688 469688 . . . alleles " C A"; frequencies " 0.689243027888446 0.310756972111554"; depth 251 ; known ; N/A GL192919.1 samtools variation 469707 469707 . . . alleles " G A"; frequencies " 0.762331838565022 0.237668161434978"; depth 223 ; unknown ; N/A GL192919.1 samtools variation 470027 470027 . . . alleles " C T"; frequencies " 0.709677419354839 0.290322580645161"; depth 62 ; unknown ; N/A GL192919.1 samtools variation 472764 472764 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192919.1 samtools variation 486593 486593 . . . alleles " G A"; frequencies " 0.696551724137931 0.303448275862069"; depth 145 ; unknown ; synonymous GL192919.1 samtools variation 496204 496204 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192919.1 samtools variation 503993 503993 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192919.1 samtools variation 608772 608772 . . . alleles " A T"; frequencies " 0.472222222222222 0.527777777777778"; depth 36 ; known ; N/A GL192919.1 samtools variation 609131 609131 . . . alleles " T C"; frequencies " 0.302325581395349 0.697674418604651"; depth 43 ; known ; N/A GL192919.1 samtools variation 609501 609501 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192919.1 samtools variation 609587 609587 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192919.1 samtools variation 610030 610030 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 35 ; unknown ; N/A GL192919.1 samtools variation 610383 610383 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL192919.1 samtools variation 610594 610594 . . . alleles " C A"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; known ; N/A GL192919.1 samtools variation 611013 611013 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL192919.1 samtools variation 611664 611664 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; known ; N/A GL192919.1 samtools variation 611757 611757 . . . alleles " T C"; frequencies " 0.648351648351648 0.351648351648352"; depth 91 ; known ; N/A GL192919.1 samtools variation 612559 612559 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192919.1 samtools variation 612640 612640 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192919.1 samtools variation 613653 613653 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 50 ; unknown ; N/A GL192919.1 samtools variation 613748 613748 . . . alleles " C A"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; known ; N/A GL192919.1 samtools variation 613945 613945 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192919.1 samtools variation 613988 613988 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 35 ; known ; N/A GL192919.1 samtools variation 614302 614302 . . . alleles " G C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192919.1 samtools variation 616405 616405 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192919.1 samtools variation 622637 622637 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192919.1 samtools variation 625123 625123 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192919.1 samtools variation 625347 625347 . . . alleles " A G"; frequencies " 0.323699421965318 0.676300578034682"; depth 346 ; known ; synonymous GL192919.1 samtools variation 625389 625389 . . . alleles " T C"; frequencies " 0.314655172413793 0.685344827586207"; depth 232 ; known ; synonymous GL192919.1 samtools variation 625852 625852 . . . alleles " T C"; frequencies " 0.638888888888889 0.361111111111111"; depth 72 ; known ; synonymous GL192919.1 samtools variation 628733 628733 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192919.1 samtools variation 628952 628952 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL192919.1 samtools variation 628989 628989 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192919.1 samtools variation 646517 646517 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL192919.1 samtools variation 719291 719291 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192919.1 samtools variation 848338 848338 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192919.1 samtools variation 925793 925793 . . . alleles " C G"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192919.1 samtools variation 926616 926616 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192919.1 samtools variation 926779 926779 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192919.1 samtools variation 978840 978840 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; synonymous GL192919.1 samtools variation 981243 981243 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; synonymous GL192919.1 samtools variation 981252 981252 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; synonymous GL192919.1 samtools variation 989757 989757 . . . alleles " G T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; synonymous GL192919.1 samtools variation 994950 994950 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; synonymous GL192919.1 samtools variation 996208 996208 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; synonymous GL192920.1 samtools variation 242961 242961 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 65 ; known ; synonymous GL192920.1 samtools variation 242979 242979 . . . alleles " T C"; frequencies " 0.44 0.56"; depth 50 ; known ; synonymous GL192920.1 samtools variation 243396 243396 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 57 ; known ; synonymous GL192920.1 samtools variation 252142 252142 . . . alleles " C A"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL192920.1 samtools variation 252230 252230 . . . alleles " A T"; frequencies " 0.76 0.24"; depth 50 ; unknown ; N/A GL192920.1 samtools variation 252238 252238 . . . alleles " T C"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; N/A GL192920.1 samtools variation 252370 252370 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192920.1 samtools variation 252959 252959 . . . alleles " G A"; frequencies " 0.678571428571429 0.321428571428571"; depth 84 ; unknown ; N/A GL192920.1 samtools variation 252989 252989 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192920.1 samtools variation 253360 253360 . . . alleles " T C"; frequencies " 0.671532846715328 0.328467153284672"; depth 137 ; unknown ; N/A GL192920.1 samtools variation 254206 254206 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192920.1 samtools variation 254387 254387 . . . alleles " A G"; frequencies " 0.704918032786885 0.295081967213115"; depth 61 ; known ; N/A GL192920.1 samtools variation 305068 305068 . . . alleles " T G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192920.1 samtools variation 312433 312433 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192920.1 samtools variation 316089 316089 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192920.1 samtools variation 330036 330036 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192920.1 samtools variation 330050 330050 . . . alleles " A C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192920.1 samtools variation 335494 335494 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192920.1 samtools variation 335602 335602 . . . alleles " T C"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; unknown ; N/A GL192920.1 samtools variation 336009 336009 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192920.1 samtools variation 336454 336454 . . . alleles " C T"; frequencies " 0.268292682926829 0.731707317073171"; depth 41 ; unknown ; N/A GL192920.1 samtools variation 336527 336527 . . . alleles " G T"; frequencies " 0.325581395348837 0.674418604651163"; depth 43 ; unknown ; N/A GL192920.1 samtools variation 339956 339956 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192920.1 samtools variation 341419 341419 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192920.1 samtools variation 342640 342640 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192920.1 samtools variation 344821 344821 . . . alleles " T C"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL192920.1 samtools variation 346670 346670 . . . alleles " G C"; frequencies " 0.233333333333333 0.766666666666667"; depth 30 ; known ; N/A GL192920.1 samtools variation 346916 346916 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192920.1 samtools variation 347079 347079 . . . alleles " G A"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL192920.1 samtools variation 349623 349623 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192920.1 samtools variation 349642 349642 . . . alleles " A G"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; known ; N/A GL192920.1 samtools variation 362837 362837 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL192920.1 samtools variation 363685 363685 . . . alleles " A T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192920.1 samtools variation 369323 369323 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192920.1 samtools variation 371238 371238 . . . alleles " G A"; frequencies " 0.635338345864662 0.364661654135338"; depth 266 ; known ; synonymous GL192920.1 samtools variation 371313 371313 . . . alleles " G A"; frequencies " 0.678899082568807 0.321100917431193"; depth 109 ; known ; synonymous GL192920.1 samtools variation 372183 372183 . . . alleles " A G"; frequencies " 0.326530612244898 0.673469387755102"; depth 98 ; known ; synonymous GL192920.1 samtools variation 372693 372693 . . . alleles " A G"; frequencies " 0.21875 0.78125"; depth 96 ; known ; synonymous GL192920.1 samtools variation 373482 373482 . . . alleles " A G"; frequencies " 0.433962264150943 0.566037735849057"; depth 53 ; unknown ; N/A GL192920.1 samtools variation 473104 473104 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192920.1 samtools variation 488621 488621 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL192920.1 samtools variation 571642 571642 . . . alleles " A G"; frequencies " 0.729903536977492 0.270096463022508"; depth 311 ; unknown ; N/A GL192921.1 samtools variation 347331 347331 . . . alleles " A G"; frequencies " 0.651685393258427 0.348314606741573"; depth 89 ; known ; non-synonymous GL192921.1 samtools variation 391070 391070 . . . alleles " C T"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; N/A GL192921.1 samtools variation 391071 391071 . . . alleles " A G"; frequencies " 0.382352941176471 0.617647058823529"; depth 34 ; unknown ; N/A GL192921.1 samtools variation 1018614 1018614 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; known ; synonymous GL192921.1 samtools variation 1030856 1030856 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL192921.1 samtools variation 1032135 1032135 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192921.1 samtools variation 1032285 1032285 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192921.1 samtools variation 1033881 1033881 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192921.1 samtools variation 1034412 1034412 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192922.1 samtools variation 142224 142224 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192922.1 samtools variation 178359 178359 . . . alleles " C T"; frequencies " 0.423376623376623 0.576623376623377"; depth 385 ; unknown ; non-synonymous GL192922.1 samtools variation 421779 421779 . . . alleles " G A"; frequencies " 0.427777777777778 0.572222222222222"; depth 180 ; unknown ; synonymous GL192922.1 samtools variation 432018 432018 . . . alleles " G C"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192922.1 samtools variation 460686 460686 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL192922.1 samtools variation 465390 465390 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192922.1 samtools variation 546787 546787 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192922.1 samtools variation 546939 546939 . . . alleles " A C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL192922.1 samtools variation 589496 589496 . . . alleles " C T"; frequencies " 0.37037037037037 0.62962962962963"; depth 54 ; unknown ; N/A GL192922.1 samtools variation 616789 616789 . . . alleles " C T"; frequencies " 0.465483234714004 0.534516765285996"; depth 507 ; unknown ; non-synonymous GL192922.1 samtools variation 633444 633444 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 34 ; unknown ; N/A GL192922.1 samtools variation 668786 668786 . . . alleles " G A"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL192922.1 samtools variation 697138 697138 . . . alleles " G A"; frequencies " 0.676691729323308 0.323308270676692"; depth 133 ; known ; N/A GL192922.1 samtools variation 697371 697371 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 72 ; unknown ; N/A GL192922.1 samtools variation 779933 779933 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192922.1 samtools variation 782856 782856 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192922.1 samtools variation 799747 799747 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192922.1 samtools variation 809158 809158 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192922.1 samtools variation 814607 814607 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 54 ; unknown ; N/A GL192922.1 samtools variation 821511 821511 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192922.1 samtools variation 918781 918781 . . . alleles " C A"; frequencies " 0.220588235294118 0.779411764705882"; depth 68 ; known ; N/A GL192922.1 samtools variation 943402 943402 . . . alleles " G A"; frequencies " 0.587209302325581 0.412790697674419"; depth 344 ; unknown ; synonymous GL192922.1 samtools variation 1102717 1102717 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL192922.1 samtools variation 1102987 1102987 . . . alleles " G T"; frequencies " 0.454545454545455 0.5"; depth 22 ; unknown ; N/A GL192922.1 samtools variation 1145993 1145993 . . . alleles " C T"; frequencies " 0.561904761904762 0.438095238095238"; depth 315 ; unknown ; N/A GL192922.1 samtools variation 1160222 1160222 . . . alleles " T G"; frequencies " 0.67595818815331 0.32404181184669"; depth 861 ; unknown ; N/A GL192922.1 samtools variation 1175907 1175907 . . . alleles " A G"; frequencies " 0.780701754385965 0.219298245614035"; depth 114 ; known ; N/A GL192924.1 samtools variation 185304 185304 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192924.1 samtools variation 213660 213660 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192924.1 samtools variation 213752 213752 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL192924.1 samtools variation 214444 214444 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192924.1 samtools variation 214696 214696 . . . alleles " A C"; frequencies " 0.76271186440678 0.23728813559322"; depth 59 ; unknown ; N/A GL192924.1 samtools variation 216825 216825 . . . alleles " G C"; frequencies " 0.705882352941177 0.294117647058824"; depth 51 ; unknown ; N/A GL192924.1 samtools variation 219684 219684 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL192924.1 samtools variation 220472 220472 . . . alleles " A G"; frequencies " 0.720430107526882 0.279569892473118"; depth 93 ; unknown ; N/A GL192924.1 samtools variation 225789 225789 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; synonymous GL192924.1 samtools variation 226038 226038 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; synonymous GL192924.1 samtools variation 226363 226363 . . . alleles " G T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; non-synonymous GL192924.1 samtools variation 293862 293862 . . . alleles " T G"; frequencies " 0.634375 0.365625"; depth 320 ; known ; synonymous GL192924.1 samtools variation 475341 475341 . . . alleles " C T"; frequencies " 0.724137931034483 0.275862068965517"; depth 87 ; unknown ; synonymous GL192924.1 samtools variation 510026 510026 . . . alleles " A C"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL192924.1 samtools variation 867770 867770 . . . alleles " A G"; frequencies " 0.701754385964912 0.298245614035088"; depth 57 ; known ; N/A GL192924.1 samtools variation 881126 881126 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192924.1 samtools variation 1013040 1013040 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL192924.1 samtools variation 1030806 1030806 . . . alleles " A C"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL192924.1 samtools variation 1031337 1031337 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192924.1 samtools variation 1035174 1035174 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 75 ; unknown ; N/A GL192925.1 samtools variation 156636 156636 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192925.1 samtools variation 338227 338227 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192925.1 samtools variation 342307 342307 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192925.1 samtools variation 343760 343760 . . . alleles " T C"; frequencies " 0.30952380952381 0.69047619047619"; depth 84 ; unknown ; non-synonymous GL192925.1 samtools variation 351923 351923 . . . alleles " C A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192925.1 samtools variation 562717 562717 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192925.1 samtools variation 645903 645903 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192925.1 samtools variation 910782 910782 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 63 ; unknown ; N/A GL192925.1 samtools variation 911406 911406 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192925.1 samtools variation 990735 990735 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192925.1 samtools variation 1013277 1013277 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; known ; N/A GL192925.1 samtools variation 1050767 1050767 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192925.1 samtools variation 1054558 1054558 . . . alleles " C T"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL192926.1 samtools variation 1006603 1006603 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL192926.1 samtools variation 1060189 1060189 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192927.1 samtools variation 100444 100444 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192927.1 samtools variation 102093 102093 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192927.1 samtools variation 108385 108385 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192927.1 samtools variation 124468 124468 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192927.1 samtools variation 127909 127909 . . . alleles " G T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL192927.1 samtools variation 138960 138960 . . . alleles " C T"; frequencies " 0.418604651162791 0.581395348837209"; depth 43 ; unknown ; N/A GL192927.1 samtools variation 139864 139864 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL192927.1 samtools variation 296435 296435 . . . alleles " G C"; frequencies " 0.531914893617021 0.468085106382979"; depth 94 ; known ; N/A GL192927.1 samtools variation 443613 443613 . . . alleles " G A"; frequencies " 0.582568807339449 0.41743119266055"; depth 218 ; known ; non-synonymous GL192927.1 samtools variation 635508 635508 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192927.1 samtools variation 635518 635518 . . . alleles " A T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192927.1 samtools variation 729785 729785 . . . alleles " T A"; frequencies " 0.764150943396226 0.235849056603774"; depth 212 ; unknown ; synonymous GL192928.1 samtools variation 270958 270958 . . . alleles " C T"; frequencies " 0.218390804597701 0.781609195402299"; depth 87 ; known ; synonymous GL192928.1 samtools variation 291686 291686 . . . alleles " C G"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; known ; N/A GL192928.1 samtools variation 293123 293123 . . . alleles " T A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192928.1 samtools variation 303203 303203 . . . alleles " T C"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; unknown ; N/A GL192928.1 samtools variation 303517 303517 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192928.1 samtools variation 303628 303628 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL192928.1 samtools variation 322231 322231 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192928.1 samtools variation 338377 338377 . . . alleles " T C"; frequencies " 0.654970760233918 0.345029239766082"; depth 171 ; unknown ; N/A GL192928.1 samtools variation 386753 386753 . . . alleles " C A"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; N/A GL192928.1 samtools variation 393859 393859 . . . alleles " G A"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL192928.1 samtools variation 395567 395567 . . . alleles " A G"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL192928.1 samtools variation 401665 401665 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192928.1 samtools variation 402759 402759 . . . alleles " T A"; frequencies " 0.619718309859155 0.380281690140845"; depth 71 ; known ; non-synonymous GL192928.1 samtools variation 403005 403005 . . . alleles " T G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192928.1 samtools variation 403477 403477 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 105 ; known ; N/A GL192928.1 samtools variation 404401 404401 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL192928.1 samtools variation 404456 404456 . . . alleles " A G"; frequencies " 0.516129032258065 0.483870967741935"; depth 62 ; known ; N/A GL192928.1 samtools variation 404635 404635 . . . alleles " G A"; frequencies " 0.462686567164179 0.537313432835821"; depth 67 ; known ; N/A GL192928.1 samtools variation 412589 412589 . . . alleles " G A"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; known ; N/A GL192928.1 samtools variation 412615 412615 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; known ; N/A GL192928.1 samtools variation 419544 419544 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192928.1 samtools variation 508369 508369 . . . alleles " G A"; frequencies " 0.616279069767442 0.383720930232558"; depth 86 ; unknown ; N/A GL192928.1 samtools variation 508417 508417 . . . alleles " T A"; frequencies " 0.4375 0.5625"; depth 80 ; known ; N/A GL192928.1 samtools variation 508452 508452 . . . alleles " G T"; frequencies " 0.451219512195122 0.548780487804878"; depth 82 ; known ; N/A GL192929.1 samtools variation 471683 471683 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192929.1 samtools variation 483555 483555 . . . alleles " C T"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192929.1 samtools variation 907816 907816 . . . alleles " T C"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; known ; N/A GL192929.1 samtools variation 986017 986017 . . . alleles " C A"; frequencies " 0.771428571428571 0.228571428571429"; depth 70 ; known ; N/A GL192929.1 samtools variation 986611 986611 . . . alleles " A T"; frequencies " 0.760869565217391 0.239130434782609"; depth 230 ; known ; N/A GL192929.1 samtools variation 1002133 1002133 . . . alleles " G A"; frequencies " 0.78343949044586 0.21656050955414"; depth 157 ; unknown ; synonymous GL192929.1 samtools variation 1004512 1004512 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192929.1 samtools variation 1008015 1008015 . . . alleles " A C"; frequencies " 0.485074626865672 0.514925373134328"; depth 134 ; unknown ; synonymous GL192929.1 samtools variation 1026275 1026275 . . . alleles " A G"; frequencies " 0.723577235772358 0.276422764227642"; depth 123 ; known ; synonymous GL192929.1 samtools variation 1033324 1033324 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192929.1 samtools variation 1035018 1035018 . . . alleles " A G"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL192929.1 samtools variation 1039307 1039307 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192929.1 samtools variation 1039317 1039317 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192929.1 samtools variation 1047759 1047759 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192929.1 samtools variation 1050256 1050256 . . . alleles " T C"; frequencies " 0.689655172413793 0.310344827586207"; depth 87 ; unknown ; non-synonymous GL192929.1 samtools variation 1054034 1054034 . . . alleles " A C"; frequencies " 0.619718309859155 0.380281690140845"; depth 71 ; known ; synonymous GL192929.1 samtools variation 1072560 1072560 . . . alleles " C T"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL192929.1 samtools variation 1134794 1134794 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192929.1 samtools variation 1134886 1134886 . . . alleles " G A"; frequencies " 0.425 0.575"; depth 40 ; unknown ; N/A GL192929.1 samtools variation 1135292 1135292 . . . alleles " C T"; frequencies " 0.24390243902439 0.75609756097561"; depth 41 ; known ; N/A GL192932.1 samtools variation 175283 175283 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192932.1 samtools variation 428970 428970 . . . alleles " C T"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; N/A GL192932.1 samtools variation 624382 624382 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192932.1 samtools variation 1145342 1145342 . . . alleles " C T"; frequencies " 0.390243902439024 0.609756097560976"; depth 41 ; known ; non-synonymous GL192933.1 samtools variation 502647 502647 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL192934.1 samtools variation 2034 2034 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192934.1 samtools variation 2129 2129 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL192934.1 samtools variation 28455 28455 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192934.1 samtools variation 38984 38984 . . . alleles " T C"; frequencies " 0.726315789473684 0.273684210526316"; depth 95 ; unknown ; N/A GL192934.1 samtools variation 39395 39395 . . . alleles " A G"; frequencies " 0.435897435897436 0.564102564102564"; depth 78 ; unknown ; N/A GL192934.1 samtools variation 39554 39554 . . . alleles " C T"; frequencies " 0.512820512820513 0.487179487179487"; depth 117 ; unknown ; N/A GL192934.1 samtools variation 39578 39578 . . . alleles " T C"; frequencies " 0.712 0.288"; depth 125 ; unknown ; N/A GL192934.1 samtools variation 39648 39648 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 77 ; unknown ; N/A GL192934.1 samtools variation 39655 39655 . . . alleles " G A"; frequencies " 0.419354838709677 0.580645161290323"; depth 93 ; unknown ; N/A GL192934.1 samtools variation 39803 39803 . . . alleles " A G"; frequencies " 0.211864406779661 0.788135593220339"; depth 236 ; unknown ; N/A GL192934.1 samtools variation 40596 40596 . . . alleles " T C"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL192934.1 samtools variation 40647 40647 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL192934.1 samtools variation 40952 40952 . . . alleles " T G"; frequencies " 0.315789473684211 0.684210526315789"; depth 38 ; unknown ; N/A GL192934.1 samtools variation 41017 41017 . . . alleles " T C"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; N/A GL192934.1 samtools variation 41059 41059 . . . alleles " T C"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192934.1 samtools variation 41149 41149 . . . alleles " A G"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL192934.1 samtools variation 41439 41439 . . . alleles " C A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192934.1 samtools variation 41487 41487 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 35 ; unknown ; N/A GL192934.1 samtools variation 41643 41643 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192934.1 samtools variation 41692 41692 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192934.1 samtools variation 41854 41854 . . . alleles " C A"; frequencies " 0.354166666666667 0.645833333333333"; depth 48 ; unknown ; N/A GL192934.1 samtools variation 43212 43212 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL192934.1 samtools variation 43241 43241 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 70 ; unknown ; N/A GL192934.1 samtools variation 43648 43648 . . . alleles " T C"; frequencies " 0.580645161290323 0.419354838709677"; depth 62 ; unknown ; N/A GL192934.1 samtools variation 43735 43735 . . . alleles " A C"; frequencies " 0.442105263157895 0.557894736842105"; depth 95 ; unknown ; N/A GL192934.1 samtools variation 43802 43802 . . . alleles " A G"; frequencies " 0.433333333333333 0.566666666666667"; depth 90 ; unknown ; N/A GL192934.1 samtools variation 44064 44064 . . . alleles " C G"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; unknown ; N/A GL192934.1 samtools variation 44167 44167 . . . alleles " T A"; frequencies " 0.579710144927536 0.420289855072464"; depth 69 ; unknown ; N/A GL192934.1 samtools variation 44457 44457 . . . alleles " A G"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; unknown ; N/A GL192934.1 samtools variation 44495 44495 . . . alleles " A C"; frequencies " 0.525423728813559 0.474576271186441"; depth 59 ; unknown ; N/A GL192934.1 samtools variation 44650 44650 . . . alleles " C T"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; unknown ; N/A GL192934.1 samtools variation 45515 45515 . . . alleles " A T"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; unknown ; N/A GL192934.1 samtools variation 45520 45520 . . . alleles " C T"; frequencies " 0.617021276595745 0.382978723404255"; depth 47 ; unknown ; N/A GL192934.1 samtools variation 48799 48799 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 50 ; unknown ; N/A GL192934.1 samtools variation 48803 48803 . . . alleles " G A"; frequencies " 0.215686274509804 0.784313725490196"; depth 51 ; unknown ; N/A GL192934.1 samtools variation 49388 49388 . . . alleles " C G"; frequencies " 0.222222222222222 0.777777777777778"; depth 54 ; known ; N/A GL192934.1 samtools variation 50368 50368 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192934.1 samtools variation 53427 53427 . . . alleles " G T"; frequencies " 0.245614035087719 0.754385964912281"; depth 57 ; known ; N/A GL192934.1 samtools variation 54669 54669 . . . alleles " T C"; frequencies " 0.204225352112676 0.795774647887324"; depth 142 ; known ; N/A GL192934.1 samtools variation 63965 63965 . . . alleles " C G"; frequencies " 0.721729490022173 0.278270509977827"; depth 1804 ; unknown ; N/A GL192934.1 samtools variation 65104 65104 . . . alleles " C T"; frequencies " 0.732142857142857 0.267857142857143"; depth 112 ; known ; N/A GL192934.1 samtools variation 65646 65646 . . . alleles " G A"; frequencies " 0.589041095890411 0.410958904109589"; depth 146 ; unknown ; N/A GL192934.1 samtools variation 66449 66449 . . . alleles " G A"; frequencies " 0.71875 0.28125"; depth 96 ; unknown ; N/A GL192934.1 samtools variation 66455 66455 . . . alleles " C T"; frequencies " 0.720430107526882 0.279569892473118"; depth 93 ; unknown ; N/A GL192934.1 samtools variation 67448 67448 . . . alleles " T C"; frequencies " 0.661764705882353 0.338235294117647"; depth 68 ; unknown ; N/A GL192934.1 samtools variation 68187 68187 . . . alleles " G A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192934.1 samtools variation 68270 68270 . . . alleles " T C"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL192934.1 samtools variation 68544 68544 . . . alleles " C A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL192934.1 samtools variation 68683 68683 . . . alleles " C T"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL192934.1 samtools variation 68900 68900 . . . alleles " T C"; frequencies " 0.760869565217391 0.239130434782609"; depth 46 ; unknown ; N/A GL192934.1 samtools variation 68950 68950 . . . alleles " C T"; frequencies " 0.73469387755102 0.26530612244898"; depth 49 ; unknown ; N/A GL192934.1 samtools variation 69257 69257 . . . alleles " A T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192934.1 samtools variation 70196 70196 . . . alleles " A G"; frequencies " 0.761194029850746 0.238805970149254"; depth 67 ; unknown ; N/A GL192934.1 samtools variation 70497 70497 . . . alleles " C T"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL192934.1 samtools variation 70562 70562 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL192934.1 samtools variation 70679 70679 . . . alleles " T C"; frequencies " 0.725 0.275"; depth 40 ; unknown ; N/A GL192934.1 samtools variation 70960 70960 . . . alleles " G T"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL192934.1 samtools variation 70961 70961 . . . alleles " C T"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL192934.1 samtools variation 71867 71867 . . . alleles " C T"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; unknown ; N/A GL192934.1 samtools variation 71896 71896 . . . alleles " C G"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL192934.1 samtools variation 72926 72926 . . . alleles " C T"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; known ; N/A GL192934.1 samtools variation 72940 72940 . . . alleles " C T"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; known ; N/A GL192934.1 samtools variation 74016 74016 . . . alleles " A G"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; unknown ; N/A GL192934.1 samtools variation 78177 78177 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 32 ; known ; N/A GL192934.1 samtools variation 78198 78198 . . . alleles " C T"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; known ; N/A GL192934.1 samtools variation 79027 79027 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL192934.1 samtools variation 79199 79199 . . . alleles " A G"; frequencies " 0.77027027027027 0.22972972972973"; depth 74 ; known ; N/A GL192934.1 samtools variation 80442 80442 . . . alleles " C A"; frequencies " 0.307692307692308 0.692307692307692"; depth 52 ; unknown ; N/A GL192934.1 samtools variation 81992 81992 . . . alleles " C T"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; known ; N/A GL192934.1 samtools variation 82821 82821 . . . alleles " A C"; frequencies " 0.596491228070175 0.403508771929825"; depth 114 ; known ; N/A GL192934.1 samtools variation 82989 82989 . . . alleles " T A"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; known ; N/A GL192934.1 samtools variation 85423 85423 . . . alleles " T C"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; known ; N/A GL192934.1 samtools variation 85959 85959 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192934.1 samtools variation 88131 88131 . . . alleles " G T"; frequencies " 0.28125 0.71875"; depth 32 ; known ; N/A GL192934.1 samtools variation 88534 88534 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL192934.1 samtools variation 88814 88814 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL192934.1 samtools variation 89347 89347 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192934.1 samtools variation 89348 89348 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192934.1 samtools variation 89811 89811 . . . alleles " T C"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; known ; N/A GL192934.1 samtools variation 90637 90637 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192934.1 samtools variation 90702 90702 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192934.1 samtools variation 95508 95508 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192934.1 samtools variation 96351 96351 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192934.1 samtools variation 97166 97166 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192934.1 samtools variation 97208 97208 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; N/A GL192934.1 samtools variation 98947 98947 . . . alleles " A G"; frequencies " 0.243243243243243 0.756756756756757"; depth 37 ; known ; N/A GL192934.1 samtools variation 99402 99402 . . . alleles " T C"; frequencies " 0.219512195121951 0.780487804878049"; depth 41 ; known ; N/A GL192934.1 samtools variation 102256 102256 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192934.1 samtools variation 112358 112358 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 64 ; unknown ; N/A GL192934.1 samtools variation 118530 118530 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192934.1 samtools variation 122378 122378 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192934.1 samtools variation 124232 124232 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192934.1 samtools variation 127408 127408 . . . alleles " C G"; frequencies " 0.785123966942149 0.214876033057851"; depth 121 ; unknown ; synonymous GL192934.1 samtools variation 131250 131250 . . . alleles " G A"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL192934.1 samtools variation 134769 134769 . . . alleles " C G"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL192934.1 samtools variation 135968 135968 . . . alleles " C G"; frequencies " 0.225563909774436 0.774436090225564"; depth 133 ; known ; non-synonymous GL192934.1 samtools variation 137396 137396 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL192934.1 samtools variation 137862 137862 . . . alleles " A G"; frequencies " 0.590062111801242 0.409937888198758"; depth 161 ; known ; synonymous GL192934.1 samtools variation 137872 137872 . . . alleles " T C"; frequencies " 0.58433734939759 0.41566265060241"; depth 166 ; known ; non-synonymous GL192934.1 samtools variation 143293 143293 . . . alleles " A G"; frequencies " 0.771929824561403 0.228070175438596"; depth 114 ; known ; N/A GL192934.1 samtools variation 144631 144631 . . . alleles " C T"; frequencies " 0.212454212454212 0.787545787545788"; depth 273 ; known ; N/A GL192934.1 samtools variation 148388 148388 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192934.1 samtools variation 153352 153352 . . . alleles " A G"; frequencies " 0.257142857142857 0.742857142857143"; depth 35 ; known ; N/A GL192934.1 samtools variation 155045 155045 . . . alleles " T A"; frequencies " 0.799163179916318 0.200836820083682"; depth 239 ; unknown ; N/A GL192934.1 samtools variation 163083 163083 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL192934.1 samtools variation 169210 169210 . . . alleles " A G"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL192934.1 samtools variation 173106 173106 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192934.1 samtools variation 173929 173929 . . . alleles " C T"; frequencies " 0.705521472392638 0.294478527607362"; depth 163 ; unknown ; N/A GL192934.1 samtools variation 177995 177995 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192934.1 samtools variation 180420 180420 . . . alleles " G A"; frequencies " 0.649006622516556 0.350993377483444"; depth 151 ; unknown ; N/A GL192934.1 samtools variation 180462 180462 . . . alleles " G A"; frequencies " 0.73728813559322 0.26271186440678"; depth 118 ; unknown ; N/A GL192934.1 samtools variation 182882 182882 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192934.1 samtools variation 186169 186169 . . . alleles " A G"; frequencies " 0.750798722044728 0.249201277955272"; depth 313 ; unknown ; N/A GL192934.1 samtools variation 189148 189148 . . . alleles " C A"; frequencies " 0.757731958762887 0.242268041237113"; depth 194 ; unknown ; N/A GL192934.1 samtools variation 189577 189577 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192934.1 samtools variation 190978 190978 . . . alleles " A G"; frequencies " 0.768 0.232"; depth 250 ; unknown ; N/A GL192934.1 samtools variation 193600 193600 . . . alleles " C G"; frequencies " 0.720739219712526 0.279260780287474"; depth 487 ; unknown ; N/A GL192934.1 samtools variation 194703 194703 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192934.1 samtools variation 194835 194835 . . . alleles " A G"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; unknown ; N/A GL192934.1 samtools variation 194872 194872 . . . alleles " G T"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; unknown ; N/A GL192934.1 samtools variation 195385 195385 . . . alleles " G A"; frequencies " 0.773399014778325 0.226600985221675"; depth 203 ; unknown ; N/A GL192934.1 samtools variation 196627 196627 . . . alleles " G T"; frequencies " 0.694444444444444 0.305555555555556"; depth 108 ; unknown ; N/A GL192934.1 samtools variation 204411 204411 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192934.1 samtools variation 205692 205692 . . . alleles " G A"; frequencies " 0.669117647058823 0.330882352941176"; depth 136 ; unknown ; N/A GL192934.1 samtools variation 210271 210271 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 224 ; unknown ; N/A GL192934.1 samtools variation 352585 352585 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 42 ; known ; N/A GL192934.1 samtools variation 352838 352838 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192934.1 samtools variation 353246 353246 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192934.1 samtools variation 354545 354545 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192934.1 samtools variation 355082 355082 . . . alleles " T C"; frequencies " 0.682539682539683 0.317460317460317"; depth 63 ; known ; N/A GL192934.1 samtools variation 355532 355532 . . . alleles " G A"; frequencies " 0.632352941176471 0.367647058823529"; depth 68 ; known ; synonymous GL192934.1 samtools variation 555190 555190 . . . alleles " G T"; frequencies " 0.640350877192982 0.359649122807018"; depth 114 ; unknown ; N/A GL192934.1 samtools variation 555191 555191 . . . alleles " C T"; frequencies " 0.64957264957265 0.35042735042735"; depth 117 ; unknown ; N/A GL192934.1 samtools variation 566610 566610 . . . alleles " A G"; frequencies " 0.526205450733753 0.473794549266247"; depth 477 ; unknown ; N/A GL192934.1 samtools variation 566639 566639 . . . alleles " T A"; frequencies " 0.542268041237113 0.457731958762887"; depth 485 ; unknown ; N/A GL192934.1 samtools variation 685275 685275 . . . alleles " A G"; frequencies " 0.775 0.2"; depth 40 ; unknown ; non-synonymous GL192934.1 samtools variation 685989 685989 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 25 ; unknown ; N/A GL192934.1 samtools variation 686849 686849 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192935.1 samtools variation 677475 677475 . . . alleles " G T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL192935.1 samtools variation 677992 677992 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192935.1 samtools variation 681432 681432 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192935.1 samtools variation 681434 681434 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192935.1 samtools variation 681584 681584 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192935.1 samtools variation 682624 682624 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 55 ; unknown ; N/A GL192935.1 samtools variation 683002 683002 . . . alleles " A G"; frequencies " 0.633928571428571 0.366071428571429"; depth 112 ; known ; N/A GL192935.1 samtools variation 683204 683204 . . . alleles " C T"; frequencies " 0.798611111111111 0.201388888888889"; depth 144 ; unknown ; N/A GL192935.1 samtools variation 683396 683396 . . . alleles " A G"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL192935.1 samtools variation 783860 783860 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192935.1 samtools variation 935951 935951 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 44 ; unknown ; synonymous GL192935.1 samtools variation 942000 942000 . . . alleles " A C"; frequencies " 0.573170731707317 0.426829268292683"; depth 82 ; unknown ; non-synonymous GL192935.1 samtools variation 943914 943914 . . . alleles " G A"; frequencies " 0.747422680412371 0.252577319587629"; depth 194 ; unknown ; non-synonymous GL192935.1 samtools variation 945925 945925 . . . alleles " C T"; frequencies " 0.715328467153285 0.284671532846715"; depth 137 ; unknown ; non-synonymous GL192935.1 samtools variation 1113442 1113442 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192936.1 samtools variation 624461 624461 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192936.1 samtools variation 625991 625991 . . . alleles " A C"; frequencies " 0.589285714285714 0.410714285714286"; depth 112 ; known ; N/A GL192936.1 samtools variation 626063 626063 . . . alleles " C G"; frequencies " 0.702898550724638 0.297101449275362"; depth 138 ; unknown ; N/A GL192936.1 samtools variation 627438 627438 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192936.1 samtools variation 627818 627818 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192936.1 samtools variation 630320 630320 . . . alleles " T C"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL192936.1 samtools variation 630387 630387 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; N/A GL192936.1 samtools variation 631221 631221 . . . alleles " G A"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; unknown ; N/A GL192936.1 samtools variation 694429 694429 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192936.1 samtools variation 694704 694704 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192936.1 samtools variation 695425 695425 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL192936.1 samtools variation 695875 695875 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192936.1 samtools variation 819802 819802 . . . alleles " C T"; frequencies " 0.78494623655914 0.21505376344086"; depth 93 ; known ; N/A GL192936.1 samtools variation 820254 820254 . . . alleles " A G"; frequencies " 0.27536231884058 0.72463768115942"; depth 69 ; unknown ; N/A GL192936.1 samtools variation 820472 820472 . . . alleles " G A"; frequencies " 0.268456375838926 0.731543624161074"; depth 298 ; known ; N/A GL192936.1 samtools variation 822087 822087 . . . alleles " T C"; frequencies " 0.675862068965517 0.324137931034483"; depth 145 ; known ; N/A GL192936.1 samtools variation 822289 822289 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL192936.1 samtools variation 822862 822862 . . . alleles " G A"; frequencies " 0.670076726342711 0.329923273657289"; depth 391 ; known ; synonymous GL192936.1 samtools variation 836199 836199 . . . alleles " T C"; frequencies " 0.72992700729927 0.262773722627737"; depth 137 ; unknown ; synonymous GL192936.1 samtools variation 1108354 1108354 . . . alleles " C T"; frequencies " 0.747252747252747 0.252747252747253"; depth 91 ; known ; non-synonymous GL192936.1 samtools variation 1133528 1133528 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; synonymous GL192937.1 samtools variation 343822 343822 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192937.1 samtools variation 416690 416690 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192937.1 samtools variation 416937 416937 . . . alleles " G C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192938.1 samtools variation 52776 52776 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL192938.1 samtools variation 74194 74194 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192938.1 samtools variation 113377 113377 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192938.1 samtools variation 113397 113397 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192938.1 samtools variation 178107 178107 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192938.1 samtools variation 185707 185707 . . . alleles " T C"; frequencies " 0.382978723404255 0.617021276595745"; depth 47 ; unknown ; N/A GL192938.1 samtools variation 186893 186893 . . . alleles " G A"; frequencies " 0.39622641509434 0.60377358490566"; depth 53 ; unknown ; N/A GL192938.1 samtools variation 186980 186980 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192938.1 samtools variation 186999 186999 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192938.1 samtools variation 187264 187264 . . . alleles " G A"; frequencies " 0.565217391304348 0.434782608695652"; depth 69 ; unknown ; N/A GL192938.1 samtools variation 187550 187550 . . . alleles " G T"; frequencies " 0.396551724137931 0.603448275862069"; depth 58 ; unknown ; N/A GL192938.1 samtools variation 187655 187655 . . . alleles " A G"; frequencies " 0.453488372093023 0.546511627906977"; depth 86 ; unknown ; N/A GL192938.1 samtools variation 188224 188224 . . . alleles " C G"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL192938.1 samtools variation 194202 194202 . . . alleles " C T"; frequencies " 0.459459459459459 0.540540540540541"; depth 74 ; known ; synonymous GL192938.1 samtools variation 200828 200828 . . . alleles " A G"; frequencies " 0.475 0.525"; depth 40 ; known ; synonymous GL192938.1 samtools variation 205325 205325 . . . alleles " G T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL192938.1 samtools variation 205353 205353 . . . alleles " C A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL192938.1 samtools variation 205360 205360 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL192938.1 samtools variation 206475 206475 . . . alleles " T C"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; known ; N/A GL192938.1 samtools variation 221235 221235 . . . alleles " G T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; synonymous GL192938.1 samtools variation 256389 256389 . . . alleles " C A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; non-synonymous GL192938.1 samtools variation 550366 550366 . . . alleles " T C"; frequencies " 0.603448275862069 0.396551724137931"; depth 58 ; known ; N/A GL192938.1 samtools variation 551486 551486 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 51 ; unknown ; N/A GL192938.1 samtools variation 616998 616998 . . . alleles " T A"; frequencies " 0.415094339622642 0.584905660377358"; depth 53 ; unknown ; non-synonymous GL192938.1 samtools variation 617218 617218 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; non-synonymous GL192938.1 samtools variation 619514 619514 . . . alleles " A C"; frequencies " 0.34375 0.65625"; depth 32 ; unknown ; non-synonymous GL192938.1 samtools variation 619517 619517 . . . alleles " T G"; frequencies " 0.34375 0.65625"; depth 32 ; unknown ; synonymous GL192938.1 samtools variation 619636 619636 . . . alleles " A G"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; unknown ; non-synonymous GL192938.1 samtools variation 619794 619794 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; non-synonymous GL192938.1 samtools variation 619871 619871 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; synonymous GL192938.1 samtools variation 623538 623538 . . . alleles " T C"; frequencies " 0.768 0.232"; depth 125 ; unknown ; non-synonymous GL192938.1 samtools variation 623674 623674 . . . alleles " C G"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; non-synonymous GL192938.1 samtools variation 623815 623815 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 57 ; unknown ; synonymous GL192939.1 samtools variation 456950 456950 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 16 ; known ; non-synonymous GL192939.1 samtools variation 457069 457069 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; synonymous GL192939.1 samtools variation 457882 457882 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; synonymous GL192939.1 samtools variation 480601 480601 . . . alleles " C T"; frequencies " 0.510752688172043 0.489247311827957"; depth 186 ; known ; synonymous GL192939.1 samtools variation 603785 603785 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192939.1 samtools variation 609852 609852 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 40 ; unknown ; synonymous GL192939.1 samtools variation 611873 611873 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; non-synonymous GL192939.1 samtools variation 637220 637220 . . . alleles " G C"; frequencies " 0.757575757575758 0.242424242424242"; depth 66 ; known ; synonymous GL192939.1 samtools variation 657016 657016 . . . alleles " G T"; frequencies " 0.654867256637168 0.345132743362832"; depth 113 ; unknown ; N/A GL192939.1 samtools variation 666616 666616 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192939.1 samtools variation 730443 730443 . . . alleles " C T"; frequencies " 0.727272727272727 0.261363636363636"; depth 88 ; known ; N/A GL192939.1 samtools variation 740918 740918 . . . alleles " A G"; frequencies " 0.625954198473282 0.374045801526718"; depth 131 ; unknown ; N/A GL192939.1 samtools variation 741192 741192 . . . alleles " C T"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL192939.1 samtools variation 760068 760068 . . . alleles " C T"; frequencies " 0.75609756097561 0.24390243902439"; depth 205 ; unknown ; synonymous GL192939.1 samtools variation 760080 760080 . . . alleles " C T"; frequencies " 0.783950617283951 0.216049382716049"; depth 162 ; unknown ; synonymous GL192939.1 samtools variation 761157 761157 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 156 ; known ; N/A GL192939.1 samtools variation 762708 762708 . . . alleles " A G"; frequencies " 0.419354838709677 0.580645161290323"; depth 62 ; known ; N/A GL192939.1 samtools variation 763120 763120 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192939.1 samtools variation 768875 768875 . . . alleles " A G"; frequencies " 0.730769230769231 0.269230769230769"; depth 52 ; unknown ; synonymous GL192939.1 samtools variation 839970 839970 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL192939.1 samtools variation 840161 840161 . . . alleles " A G"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192939.1 samtools variation 840313 840313 . . . alleles " A C"; frequencies " 0.408163265306122 0.591836734693878"; depth 49 ; unknown ; N/A GL192939.1 samtools variation 855301 855301 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192940.1 samtools variation 193631 193631 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 297 ; unknown ; N/A GL192940.1 samtools variation 535607 535607 . . . alleles " T C"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL192940.1 samtools variation 554915 554915 . . . alleles " T A"; frequencies " 0.298969072164948 0.701030927835051"; depth 97 ; unknown ; synonymous GL192940.1 samtools variation 567965 567965 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; synonymous GL192940.1 samtools variation 680365 680365 . . . alleles " C T"; frequencies " 0.222222222222222 0.777777777777778"; depth 45 ; unknown ; N/A GL192941.1 samtools variation 98058 98058 . . . alleles " C G"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; known ; N/A GL192941.1 samtools variation 98835 98835 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL192941.1 samtools variation 115939 115939 . . . alleles " G A"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; known ; synonymous GL192941.1 samtools variation 121706 121706 . . . alleles " A G"; frequencies " 0.236842105263158 0.763157894736842"; depth 38 ; known ; N/A GL192941.1 samtools variation 854935 854935 . . . alleles " A G"; frequencies " 0.275 0.725"; depth 40 ; unknown ; synonymous GL192941.1 samtools variation 864664 864664 . . . alleles " G T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; synonymous GL192941.1 samtools variation 902209 902209 . . . alleles " T G"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; synonymous GL192941.1 samtools variation 902271 902271 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; non-synonymous GL192941.1 samtools variation 1143126 1143126 . . . alleles " C T"; frequencies " 0.594202898550725 0.405797101449275"; depth 69 ; unknown ; N/A GL192942.1 samtools variation 65761 65761 . . . alleles " G T"; frequencies " 0.704697986577181 0.288590604026846"; depth 149 ; unknown ; synonymous GL192942.1 samtools variation 70832 70832 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; non-synonymous GL192942.1 samtools variation 71037 71037 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192942.1 samtools variation 100636 100636 . . . alleles " C T"; frequencies " 0.589285714285714 0.410714285714286"; depth 56 ; known ; N/A GL192942.1 samtools variation 100776 100776 . . . alleles " T C"; frequencies " 0.622641509433962 0.377358490566038"; depth 53 ; known ; N/A GL192942.1 samtools variation 100797 100797 . . . alleles " G A"; frequencies " 0.612903225806452 0.387096774193548"; depth 62 ; known ; N/A GL192942.1 samtools variation 101156 101156 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192942.1 samtools variation 105659 105659 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192942.1 samtools variation 108258 108258 . . . alleles " A G"; frequencies " 0.537735849056604 0.462264150943396"; depth 106 ; unknown ; synonymous GL192942.1 samtools variation 108746 108746 . . . alleles " C T"; frequencies " 0.40625 0.59375"; depth 32 ; known ; N/A GL192942.1 samtools variation 109099 109099 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192942.1 samtools variation 110219 110219 . . . alleles " T C"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; known ; N/A GL192942.1 samtools variation 110264 110264 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 28 ; known ; N/A GL192942.1 samtools variation 110394 110394 . . . alleles " A C"; frequencies " 0.371681415929204 0.619469026548673"; depth 113 ; known ; non-synonymous GL192942.1 samtools variation 110454 110454 . . . alleles " T C"; frequencies " 0.583783783783784 0.416216216216216"; depth 185 ; known ; non-synonymous GL192942.1 samtools variation 111506 111506 . . . alleles " G A"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; known ; N/A GL192942.1 samtools variation 111630 111630 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL192942.1 samtools variation 111988 111988 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; known ; N/A GL192942.1 samtools variation 117921 117921 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 55 ; known ; non-synonymous GL192942.1 samtools variation 121914 121914 . . . alleles " G A"; frequencies " 0.77536231884058 0.22463768115942"; depth 138 ; known ; N/A GL192942.1 samtools variation 123702 123702 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL192942.1 samtools variation 123904 123904 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192942.1 samtools variation 125837 125837 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192942.1 samtools variation 128334 128334 . . . alleles " A C"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL192942.1 samtools variation 129223 129223 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192942.1 samtools variation 132349 132349 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192942.1 samtools variation 133171 133171 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192942.1 samtools variation 133568 133568 . . . alleles " A C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192942.1 samtools variation 136204 136204 . . . alleles " G A"; frequencies " 0.492537313432836 0.507462686567164"; depth 67 ; known ; synonymous GL192942.1 samtools variation 137801 137801 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192942.1 samtools variation 137982 137982 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192942.1 samtools variation 139513 139513 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; known ; N/A GL192942.1 samtools variation 139627 139627 . . . alleles " T C"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL192942.1 samtools variation 139682 139682 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192942.1 samtools variation 139855 139855 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL192942.1 samtools variation 141603 141603 . . . alleles " A G"; frequencies " 0.520408163265306 0.479591836734694"; depth 98 ; known ; synonymous GL192942.1 samtools variation 141767 141767 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192942.1 samtools variation 146409 146409 . . . alleles " G A"; frequencies " 0.49438202247191 0.50561797752809"; depth 89 ; known ; synonymous GL192942.1 samtools variation 214764 214764 . . . alleles " A C"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; synonymous GL192942.1 samtools variation 247839 247839 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; synonymous GL192942.1 samtools variation 569780 569780 . . . alleles " A G"; frequencies " 0.664948453608247 0.335051546391753"; depth 194 ; known ; N/A GL192942.1 samtools variation 628976 628976 . . . alleles " A G"; frequencies " 0.376288659793814 0.623711340206186"; depth 194 ; unknown ; non-synonymous GL192942.1 samtools variation 628980 628980 . . . alleles " G A"; frequencies " 0.41304347826087 0.58695652173913"; depth 184 ; unknown ; synonymous GL192942.1 samtools variation 667374 667374 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; synonymous GL192942.1 samtools variation 690953 690953 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192942.1 samtools variation 692705 692705 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL192942.1 samtools variation 708323 708323 . . . alleles " A C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192942.1 samtools variation 710277 710277 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 38 ; unknown ; N/A GL192942.1 samtools variation 772926 772926 . . . alleles " G A"; frequencies " 0.304878048780488 0.695121951219512"; depth 82 ; unknown ; N/A GL192942.1 samtools variation 772992 772992 . . . alleles " A G"; frequencies " 0.311926605504587 0.688073394495413"; depth 109 ; unknown ; N/A GL192942.1 samtools variation 773011 773011 . . . alleles " G A"; frequencies " 0.339285714285714 0.660714285714286"; depth 112 ; unknown ; N/A GL192942.1 samtools variation 773118 773118 . . . alleles " C G"; frequencies " 0.411111111111111 0.586666666666667"; depth 450 ; unknown ; N/A GL192942.1 samtools variation 773685 773685 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192942.1 samtools variation 774211 774211 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192942.1 samtools variation 774299 774299 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192942.1 samtools variation 774813 774813 . . . alleles " G A"; frequencies " 0.722972972972973 0.277027027027027"; depth 444 ; unknown ; synonymous GL192942.1 samtools variation 775053 775053 . . . alleles " C T"; frequencies " 0.798611111111111 0.201388888888889"; depth 288 ; unknown ; synonymous GL192942.1 samtools variation 775368 775368 . . . alleles " T C"; frequencies " 0.592592592592593 0.407407407407407"; depth 162 ; unknown ; synonymous GL192942.1 samtools variation 778197 778197 . . . alleles " G A"; frequencies " 0.588888888888889 0.411111111111111"; depth 90 ; unknown ; synonymous GL192942.1 samtools variation 802464 802464 . . . alleles " C T"; frequencies " 0.781609195402299 0.218390804597701"; depth 87 ; unknown ; non-synonymous GL192942.1 samtools variation 807763 807763 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 64 ; unknown ; N/A GL192942.1 samtools variation 807872 807872 . . . alleles " G C"; frequencies " 0.787234042553192 0.212765957446809"; depth 94 ; unknown ; N/A GL192942.1 samtools variation 811227 811227 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192942.1 samtools variation 811252 811252 . . . alleles " A T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192942.1 samtools variation 812928 812928 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192942.1 samtools variation 836266 836266 . . . alleles " C T"; frequencies " 0.313609467455621 0.686390532544379"; depth 169 ; unknown ; synonymous GL192942.1 samtools variation 838748 838748 . . . alleles " G C"; frequencies " 0.73972602739726 0.26027397260274"; depth 146 ; unknown ; synonymous GL192942.1 samtools variation 840728 840728 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL192942.1 samtools variation 840792 840792 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192942.1 samtools variation 840828 840828 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192942.1 samtools variation 840836 840836 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192942.1 samtools variation 845565 845565 . . . alleles " C T"; frequencies " 0.505882352941176 0.494117647058824"; depth 170 ; unknown ; N/A GL192942.1 samtools variation 846012 846012 . . . alleles " T A"; frequencies " 0.703703703703704 0.296296296296296"; depth 54 ; unknown ; N/A GL192942.1 samtools variation 859374 859374 . . . alleles " C T"; frequencies " 0.42962962962963 0.57037037037037"; depth 270 ; unknown ; synonymous GL192942.1 samtools variation 859897 859897 . . . alleles " A G"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL192942.1 samtools variation 861757 861757 . . . alleles " C T"; frequencies " 0.305555555555556 0.694444444444444"; depth 72 ; unknown ; N/A GL192942.1 samtools variation 862520 862520 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL192942.1 samtools variation 865161 865161 . . . alleles " G A"; frequencies " 0.242424242424242 0.757575757575758"; depth 33 ; unknown ; N/A GL192942.1 samtools variation 867616 867616 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; N/A GL192942.1 samtools variation 870711 870711 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192942.1 samtools variation 872640 872640 . . . alleles " C T"; frequencies " 0.388059701492537 0.611940298507463"; depth 67 ; unknown ; N/A GL192942.1 samtools variation 872798 872798 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 75 ; unknown ; N/A GL192942.1 samtools variation 980001 980001 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192942.1 samtools variation 980076 980076 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192942.1 samtools variation 980179 980179 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192942.1 samtools variation 984188 984188 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192942.1 samtools variation 988887 988887 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192942.1 samtools variation 1003131 1003131 . . . alleles " A T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL192942.1 samtools variation 1009766 1009766 . . . alleles " T G"; frequencies " 0.571428571428571 0.428571428571429"; depth 56 ; unknown ; N/A GL192942.1 samtools variation 1010870 1010870 . . . alleles " T A"; frequencies " 0.365058670143416 0.634941329856584"; depth 767 ; unknown ; N/A GL192942.1 samtools variation 1011820 1011820 . . . alleles " T C"; frequencies " 0.296213808463252 0.703786191536748"; depth 898 ; unknown ; N/A GL192942.1 samtools variation 1079907 1079907 . . . alleles " T A"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; synonymous GL192942.1 samtools variation 1107009 1107009 . . . alleles " G T"; frequencies " 0.254901960784314 0.745098039215686"; depth 51 ; unknown ; non-synonymous GL192942.1 samtools variation 1119932 1119932 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192942.1 samtools variation 1122110 1122110 . . . alleles " T C"; frequencies " 0.366666666666667 0.633333333333333"; depth 60 ; unknown ; synonymous GL192943.1 samtools variation 295915 295915 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192943.1 samtools variation 295959 295959 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192943.1 samtools variation 296595 296595 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192943.1 samtools variation 297726 297726 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192943.1 samtools variation 297745 297745 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL192943.1 samtools variation 320682 320682 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192943.1 samtools variation 326473 326473 . . . alleles " C T"; frequencies " 0.717391304347826 0.282608695652174"; depth 138 ; unknown ; synonymous GL192943.1 samtools variation 327721 327721 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192943.1 samtools variation 328328 328328 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192943.1 samtools variation 328335 328335 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192943.1 samtools variation 349070 349070 . . . alleles " C T"; frequencies " 0.431034482758621 0.568965517241379"; depth 58 ; unknown ; N/A GL192943.1 samtools variation 349370 349370 . . . alleles " T C"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; unknown ; N/A GL192943.1 samtools variation 350757 350757 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; unknown ; N/A GL192943.1 samtools variation 350970 350970 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 48 ; unknown ; N/A GL192943.1 samtools variation 354297 354297 . . . alleles " A G"; frequencies " 0.310344827586207 0.689655172413793"; depth 58 ; unknown ; N/A GL192943.1 samtools variation 947203 947203 . . . alleles " C T"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; known ; synonymous GL192943.1 samtools variation 947254 947254 . . . alleles " C T"; frequencies " 0.558139534883721 0.441860465116279"; depth 43 ; known ; synonymous GL192943.1 samtools variation 947506 947506 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; synonymous GL192943.1 samtools variation 952497 952497 . . . alleles " T C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; synonymous GL192943.1 samtools variation 953481 953481 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192943.1 samtools variation 953484 953484 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192943.1 samtools variation 954257 954257 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; known ; N/A GL192943.1 samtools variation 965980 965980 . . . alleles " G A"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; unknown ; non-synonymous GL192943.1 samtools variation 978261 978261 . . . alleles " A G"; frequencies " 0.439024390243902 0.560975609756098"; depth 41 ; unknown ; synonymous GL192943.1 samtools variation 1004448 1004448 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192943.1 samtools variation 1006538 1006538 . . . alleles " C T"; frequencies " 0.786206896551724 0.213793103448276"; depth 145 ; unknown ; synonymous GL192943.1 samtools variation 1010288 1010288 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL192943.1 samtools variation 1011194 1011194 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192943.1 samtools variation 1011381 1011381 . . . alleles " G A"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; N/A GL192943.1 samtools variation 1028924 1028924 . . . alleles " G T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192943.1 samtools variation 1029350 1029350 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192943.1 samtools variation 1033539 1033539 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 25 ; known ; N/A GL192943.1 samtools variation 1044291 1044291 . . . alleles " T C"; frequencies " 0.471698113207547 0.528301886792453"; depth 53 ; known ; N/A GL192943.1 samtools variation 1044334 1044334 . . . alleles " A T"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; known ; N/A GL192943.1 samtools variation 1044543 1044543 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192943.1 samtools variation 1046544 1046544 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192943.1 samtools variation 1051149 1051149 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192943.1 samtools variation 1051158 1051158 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192943.1 samtools variation 1063107 1063107 . . . alleles " G A"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL192943.1 samtools variation 1066189 1066189 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192943.1 samtools variation 1066247 1066247 . . . alleles " C G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL192943.1 samtools variation 1066393 1066393 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL192943.1 samtools variation 1066714 1066714 . . . alleles " T G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192943.1 samtools variation 1127903 1127903 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL192943.1 samtools variation 1130652 1130652 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192943.1 samtools variation 1130948 1130948 . . . alleles " A G"; frequencies " 0.586206896551724 0.379310344827586"; depth 29 ; unknown ; N/A GL192944.1 samtools variation 341953 341953 . . . alleles " T G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192944.1 samtools variation 343334 343334 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192944.1 samtools variation 344918 344918 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 30 ; unknown ; N/A GL192944.1 samtools variation 719825 719825 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; non-synonymous GL192946.1 samtools variation 811034 811034 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192946.1 samtools variation 813119 813119 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL192946.1 samtools variation 813128 813128 . . . alleles " A G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL192946.1 samtools variation 813986 813986 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192946.1 samtools variation 814076 814076 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192946.1 samtools variation 814415 814415 . . . alleles " A G"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL192946.1 samtools variation 814416 814416 . . . alleles " C T"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL192946.1 samtools variation 944170 944170 . . . alleles " T G"; frequencies " 0.787878787878788 0.212121212121212"; depth 66 ; unknown ; N/A GL192946.1 samtools variation 948025 948025 . . . alleles " A G"; frequencies " 0.76989247311828 0.23010752688172"; depth 465 ; unknown ; N/A GL192946.1 samtools variation 948426 948426 . . . alleles " G T"; frequencies " 0.792899408284024 0.207100591715976"; depth 169 ; unknown ; N/A GL192946.1 samtools variation 1023462 1023462 . . . alleles " G A"; frequencies " 0.63302752293578 0.36697247706422"; depth 109 ; unknown ; synonymous GL192950.1 samtools variation 126257 126257 . . . alleles " A G"; frequencies " 0.300771208226221 0.699228791773779"; depth 389 ; known ; N/A GL192950.1 samtools variation 126285 126285 . . . alleles " C T"; frequencies " 0.363265306122449 0.636734693877551"; depth 245 ; known ; N/A GL192950.1 samtools variation 130129 130129 . . . alleles " C A"; frequencies " 0.350340136054422 0.649659863945578"; depth 294 ; unknown ; non-synonymous GL192950.1 samtools variation 130172 130172 . . . alleles " G A"; frequencies " 0.213709677419355 0.782258064516129"; depth 248 ; known ; synonymous GL192950.1 samtools variation 746482 746482 . . . alleles " C T"; frequencies " 0.581395348837209 0.418604651162791"; depth 43 ; unknown ; synonymous GL192950.1 samtools variation 812647 812647 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; synonymous GL192950.1 samtools variation 819227 819227 . . . alleles " A C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; synonymous GL192955.1 samtools variation 46530 46530 . . . alleles " T C"; frequencies " 0.787878787878788 0.212121212121212"; depth 66 ; unknown ; synonymous GL192957.1 samtools variation 39614 39614 . . . alleles " A T"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL192957.1 samtools variation 43080 43080 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192957.1 samtools variation 43483 43483 . . . alleles " C G"; frequencies " 0.242424242424242 0.757575757575758"; depth 33 ; unknown ; N/A GL192957.1 samtools variation 43809 43809 . . . alleles " C T"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL192957.1 samtools variation 97927 97927 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192957.1 samtools variation 121494 121494 . . . alleles " T G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL192957.1 samtools variation 121503 121503 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL192957.1 samtools variation 124941 124941 . . . alleles " T C"; frequencies " 0.351219512195122 0.639024390243902"; depth 205 ; known ; synonymous GL192957.1 samtools variation 124968 124968 . . . alleles " T C"; frequencies " 0.355029585798817 0.644970414201183"; depth 169 ; known ; synonymous GL192957.1 samtools variation 131922 131922 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 38 ; unknown ; N/A GL192957.1 samtools variation 133004 133004 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL192957.1 samtools variation 140157 140157 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 81 ; unknown ; non-synonymous GL192957.1 samtools variation 282746 282746 . . . alleles " G A"; frequencies " 0.517482517482518 0.482517482517482"; depth 143 ; unknown ; synonymous GL192957.1 samtools variation 355085 355085 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192957.1 samtools variation 362748 362748 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192957.1 samtools variation 366268 366268 . . . alleles " C T"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; known ; N/A GL192957.1 samtools variation 373473 373473 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL192957.1 samtools variation 374303 374303 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 51 ; unknown ; N/A GL192959.1 samtools variation 194932 194932 . . . alleles " T C"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL192959.1 samtools variation 257532 257532 . . . alleles " C T"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192959.1 samtools variation 257954 257954 . . . alleles " A G"; frequencies " 0.767123287671233 0.232876712328767"; depth 73 ; unknown ; N/A GL192959.1 samtools variation 258293 258293 . . . alleles " T C"; frequencies " 0.724770642201835 0.275229357798165"; depth 109 ; unknown ; N/A GL192959.1 samtools variation 258524 258524 . . . alleles " G A"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; unknown ; N/A GL192959.1 samtools variation 258844 258844 . . . alleles " G C"; frequencies " 0.294117647058824 0.705882352941177"; depth 34 ; unknown ; N/A GL192959.1 samtools variation 259079 259079 . . . alleles " A C"; frequencies " 0.367924528301887 0.632075471698113"; depth 106 ; unknown ; N/A GL192959.1 samtools variation 261951 261951 . . . alleles " T G"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL192959.1 samtools variation 289886 289886 . . . alleles " G A"; frequencies " 0.204225352112676 0.795774647887324"; depth 142 ; known ; N/A GL192959.1 samtools variation 289892 289892 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 100 ; known ; N/A GL192959.1 samtools variation 290015 290015 . . . alleles " G A"; frequencies " 0.764976958525346 0.235023041474654"; depth 217 ; known ; N/A GL192959.1 samtools variation 292098 292098 . . . alleles " A G"; frequencies " 0.422680412371134 0.577319587628866"; depth 194 ; unknown ; N/A GL192959.1 samtools variation 301349 301349 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192959.1 samtools variation 907062 907062 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; known ; N/A GL192959.1 samtools variation 909351 909351 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 44 ; unknown ; N/A GL192959.1 samtools variation 910033 910033 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 76 ; unknown ; N/A GL192960.1 samtools variation 91251 91251 . . . alleles " C A"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; unknown ; N/A GL192960.1 samtools variation 91448 91448 . . . alleles " A G"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL192960.1 samtools variation 661102 661102 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192962.1 samtools variation 180293 180293 . . . alleles " G A"; frequencies " 0.696969696969697 0.303030303030303"; depth 66 ; unknown ; synonymous GL192962.1 samtools variation 180599 180599 . . . alleles " A C"; frequencies " 0.674418604651163 0.325581395348837"; depth 129 ; known ; synonymous GL192962.1 samtools variation 227946 227946 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192962.1 samtools variation 243745 243745 . . . alleles " A G"; frequencies " 0.505494505494505 0.494505494505495"; depth 91 ; known ; synonymous GL192962.1 samtools variation 251752 251752 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192962.1 samtools variation 252230 252230 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL192962.1 samtools variation 253400 253400 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192962.1 samtools variation 253896 253896 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL192962.1 samtools variation 253913 253913 . . . alleles " C T"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192962.1 samtools variation 253945 253945 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL192962.1 samtools variation 254167 254167 . . . alleles " A C"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL192962.1 samtools variation 254187 254187 . . . alleles " C T"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL192962.1 samtools variation 254188 254188 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 30 ; known ; N/A GL192962.1 samtools variation 255202 255202 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192962.1 samtools variation 255205 255205 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL192962.1 samtools variation 255318 255318 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL192962.1 samtools variation 255362 255362 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 30 ; known ; N/A GL192962.1 samtools variation 255419 255419 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL192962.1 samtools variation 255432 255432 . . . alleles " T C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192962.1 samtools variation 255449 255449 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192962.1 samtools variation 257043 257043 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL192962.1 samtools variation 257106 257106 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL192962.1 samtools variation 257762 257762 . . . alleles " C T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL192962.1 samtools variation 262805 262805 . . . alleles " T C"; frequencies " 0.542857142857143 0.457142857142857"; depth 140 ; known ; synonymous GL192962.1 samtools variation 270323 270323 . . . alleles " C T"; frequencies " 0.395833333333333 0.604166666666667"; depth 48 ; unknown ; N/A GL192962.1 samtools variation 510446 510446 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192962.1 samtools variation 510484 510484 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192962.1 samtools variation 511755 511755 . . . alleles " T C"; frequencies " 0.425 0.575"; depth 40 ; unknown ; N/A GL192962.1 samtools variation 515035 515035 . . . alleles " T G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; non-synonymous GL192962.1 samtools variation 568168 568168 . . . alleles " T C"; frequencies " 0.530612244897959 0.469387755102041"; depth 147 ; known ; synonymous GL192962.1 samtools variation 571019 571019 . . . alleles " A G"; frequencies " 0.611570247933884 0.388429752066116"; depth 121 ; known ; synonymous GL192962.1 samtools variation 573964 573964 . . . alleles " G A"; frequencies " 0.227722772277228 0.772277227722772"; depth 101 ; known ; synonymous GL192962.1 samtools variation 575035 575035 . . . alleles " T C"; frequencies " 0.282051282051282 0.717948717948718"; depth 39 ; known ; non-synonymous GL192962.1 samtools variation 596286 596286 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192962.1 samtools variation 598716 598716 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192962.1 samtools variation 772654 772654 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192962.1 samtools variation 1055059 1055059 . . . alleles " C T"; frequencies " 0.693877551020408 0.306122448979592"; depth 49 ; unknown ; synonymous GL192963.1 samtools variation 200392 200392 . . . alleles " T C"; frequencies " 0.791574279379157 0.208425720620843"; depth 451 ; unknown ; N/A GL192963.1 samtools variation 200405 200405 . . . alleles " T C"; frequencies " 0.758181818181818 0.241818181818182"; depth 550 ; unknown ; N/A GL192963.1 samtools variation 214347 214347 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192963.1 samtools variation 222102 222102 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192963.1 samtools variation 222112 222112 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192963.1 samtools variation 468997 468997 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; non-synonymous GL192963.1 samtools variation 630381 630381 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192963.1 samtools variation 630422 630422 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192963.1 samtools variation 631078 631078 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL192963.1 samtools variation 637072 637072 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192963.1 samtools variation 638171 638171 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL192963.1 samtools variation 638312 638312 . . . alleles " G A"; frequencies " 0.7875 0.2125"; depth 80 ; unknown ; N/A GL192963.1 samtools variation 639393 639393 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192963.1 samtools variation 642423 642423 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192963.1 samtools variation 647169 647169 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL192963.1 samtools variation 647430 647430 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192963.1 samtools variation 650015 650015 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192963.1 samtools variation 653684 653684 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 44 ; unknown ; N/A GL192963.1 samtools variation 925841 925841 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192963.1 samtools variation 927888 927888 . . . alleles " T C"; frequencies " 0.752604166666667 0.247395833333333"; depth 384 ; unknown ; N/A GL192963.1 samtools variation 1026252 1026252 . . . alleles " T C"; frequencies " 0.776264591439689 0.223735408560311"; depth 514 ; unknown ; N/A GL192963.1 samtools variation 1028553 1028553 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 77 ; unknown ; N/A GL192963.1 samtools variation 1038532 1038532 . . . alleles " A C"; frequencies " 0.558441558441558 0.441558441558442"; depth 77 ; unknown ; N/A GL192963.1 samtools variation 1071585 1071585 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL192963.1 samtools variation 1073150 1073150 . . . alleles " G A"; frequencies " 0.669767441860465 0.330232558139535"; depth 215 ; unknown ; N/A GL192964.1 samtools variation 160033 160033 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 64 ; unknown ; N/A GL192964.1 samtools variation 160099 160099 . . . alleles " G A"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL192964.1 samtools variation 161047 161047 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192964.1 samtools variation 161188 161188 . . . alleles " A G"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL192964.1 samtools variation 197130 197130 . . . alleles " C G"; frequencies " 0.350515463917526 0.649484536082474"; depth 97 ; known ; non-synonymous GL192964.1 samtools variation 197220 197220 . . . alleles " G A"; frequencies " 0.783333333333333 0.216666666666667"; depth 60 ; known ; non-synonymous GL192964.1 samtools variation 232487 232487 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; non-synonymous GL192964.1 samtools variation 263750 263750 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192964.1 samtools variation 264088 264088 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192964.1 samtools variation 264754 264754 . . . alleles " A T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL192964.1 samtools variation 265394 265394 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL192964.1 samtools variation 265929 265929 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 64 ; unknown ; N/A GL192964.1 samtools variation 265941 265941 . . . alleles " G A"; frequencies " 0.439393939393939 0.560606060606061"; depth 66 ; known ; N/A GL192964.1 samtools variation 266228 266228 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL192964.1 samtools variation 266314 266314 . . . alleles " T C"; frequencies " 0.558823529411765 0.441176470588235"; depth 68 ; known ; N/A GL192964.1 samtools variation 266544 266544 . . . alleles " C T"; frequencies " 0.566037735849057 0.433962264150943"; depth 53 ; known ; N/A GL192964.1 samtools variation 266601 266601 . . . alleles " G C"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL192964.1 samtools variation 267270 267270 . . . alleles " C G"; frequencies " 0.274193548387097 0.725806451612903"; depth 62 ; known ; N/A GL192964.1 samtools variation 267653 267653 . . . alleles " G A"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL192964.1 samtools variation 267817 267817 . . . alleles " C T"; frequencies " 0.644444444444444 0.355555555555556"; depth 45 ; unknown ; N/A GL192964.1 samtools variation 268041 268041 . . . alleles " T C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192964.1 samtools variation 268234 268234 . . . alleles " T A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192964.1 samtools variation 268235 268235 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192964.1 samtools variation 268457 268457 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; known ; N/A GL192964.1 samtools variation 268583 268583 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL192964.1 samtools variation 268648 268648 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192964.1 samtools variation 269088 269088 . . . alleles " G A"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; known ; N/A GL192964.1 samtools variation 269691 269691 . . . alleles " T C"; frequencies " 0.700787401574803 0.299212598425197"; depth 127 ; unknown ; N/A GL192964.1 samtools variation 269909 269909 . . . alleles " G T"; frequencies " 0.25 0.75"; depth 28 ; known ; N/A GL192964.1 samtools variation 269960 269960 . . . alleles " T G"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; N/A GL192964.1 samtools variation 270395 270395 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 44 ; known ; N/A GL192964.1 samtools variation 271310 271310 . . . alleles " C T"; frequencies " 0.673076923076923 0.326923076923077"; depth 52 ; unknown ; N/A GL192964.1 samtools variation 271528 271528 . . . alleles " G T"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL192964.1 samtools variation 272477 272477 . . . alleles " G T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192964.1 samtools variation 272690 272690 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192964.1 samtools variation 272753 272753 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192964.1 samtools variation 272761 272761 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192964.1 samtools variation 272766 272766 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192964.1 samtools variation 272956 272956 . . . alleles " C T"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; known ; N/A GL192964.1 samtools variation 272987 272987 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL192964.1 samtools variation 273089 273089 . . . alleles " C A"; frequencies " 0.204545454545455 0.795454545454545"; depth 44 ; known ; N/A GL192964.1 samtools variation 273287 273287 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 50 ; known ; N/A GL192964.1 samtools variation 273434 273434 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL192964.1 samtools variation 273495 273495 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192964.1 samtools variation 273831 273831 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL192964.1 samtools variation 273953 273953 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL192964.1 samtools variation 273986 273986 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192964.1 samtools variation 274892 274892 . . . alleles " A C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192964.1 samtools variation 275941 275941 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL192964.1 samtools variation 277171 277171 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL192964.1 samtools variation 284672 284672 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; N/A GL192964.1 samtools variation 284698 284698 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; unknown ; N/A GL192964.1 samtools variation 285894 285894 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL192964.1 samtools variation 336450 336450 . . . alleles " C T"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; N/A GL192964.1 samtools variation 349313 349313 . . . alleles " A C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192964.1 samtools variation 349540 349540 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192964.1 samtools variation 424531 424531 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192964.1 samtools variation 441099 441099 . . . alleles " C T"; frequencies " 0.741935483870968 0.258064516129032"; depth 62 ; unknown ; N/A GL192964.1 samtools variation 443913 443913 . . . alleles " T C"; frequencies " 0.6125 0.3875"; depth 80 ; unknown ; N/A GL192964.1 samtools variation 445381 445381 . . . alleles " T C"; frequencies " 0.254901960784314 0.745098039215686"; depth 102 ; known ; N/A GL192964.1 samtools variation 445450 445450 . . . alleles " T C"; frequencies " 0.202380952380952 0.797619047619048"; depth 84 ; known ; N/A GL192964.1 samtools variation 445941 445941 . . . alleles " C T"; frequencies " 0.328358208955224 0.671641791044776"; depth 67 ; unknown ; N/A GL192964.1 samtools variation 446900 446900 . . . alleles " C G"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL192964.1 samtools variation 450426 450426 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192964.1 samtools variation 508112 508112 . . . alleles " A G"; frequencies " 0.721311475409836 0.278688524590164"; depth 61 ; unknown ; N/A GL192964.1 samtools variation 510997 510997 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192964.1 samtools variation 511351 511351 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL192964.1 samtools variation 511746 511746 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192964.1 samtools variation 512186 512186 . . . alleles " A G"; frequencies " 0.224669603524229 0.775330396475771"; depth 227 ; unknown ; N/A GL192964.1 samtools variation 519841 519841 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192964.1 samtools variation 692653 692653 . . . alleles " G A"; frequencies " 0.386363636363636 0.613636363636364"; depth 44 ; unknown ; N/A GL192964.1 samtools variation 704811 704811 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192964.1 samtools variation 705400 705400 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL192964.1 samtools variation 806649 806649 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 24 ; unknown ; synonymous GL192964.1 samtools variation 818143 818143 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 35 ; unknown ; synonymous GL192964.1 samtools variation 818261 818261 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; non-synonymous GL192964.1 samtools variation 823301 823301 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; non-synonymous GL192964.1 samtools variation 851398 851398 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; synonymous GL192964.1 samtools variation 936396 936396 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL192964.1 samtools variation 944238 944238 . . . alleles " C T"; frequencies " 0.552631578947368 0.447368421052632"; depth 76 ; unknown ; non-synonymous GL192964.1 samtools variation 1076997 1076997 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL192964.1 samtools variation 1099564 1099564 . . . alleles " C T"; frequencies " 0.318965517241379 0.681034482758621"; depth 116 ; unknown ; N/A GL192964.1 samtools variation 1109766 1109766 . . . alleles " A G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL192964.1 samtools variation 1109938 1109938 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192964.1 samtools variation 1110128 1110128 . . . alleles " G T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192964.1 samtools variation 1115129 1115129 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL192964.1 samtools variation 1129434 1129434 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192964.1 samtools variation 1129709 1129709 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192964.1 samtools variation 1130228 1130228 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 35 ; unknown ; N/A GL192965.1 samtools variation 964720 964720 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL192965.1 samtools variation 983510 983510 . . . alleles " T G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192965.1 samtools variation 989984 989984 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192965.1 samtools variation 989991 989991 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL192965.1 samtools variation 994539 994539 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL192965.1 samtools variation 995373 995373 . . . alleles " G A"; frequencies " 0.302325581395349 0.697674418604651"; depth 43 ; known ; N/A GL192965.1 samtools variation 997037 997037 . . . alleles " G A"; frequencies " 0.796296296296296 0.203703703703704"; depth 54 ; unknown ; N/A GL192965.1 samtools variation 997840 997840 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 55 ; known ; N/A GL192965.1 samtools variation 997925 997925 . . . alleles " A T"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; known ; N/A GL192965.1 samtools variation 999688 999688 . . . alleles " A G"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; known ; N/A GL192965.1 samtools variation 1002236 1002236 . . . alleles " C G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL192965.1 samtools variation 1004677 1004677 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL192965.1 samtools variation 1006926 1006926 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192965.1 samtools variation 1006939 1006939 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192965.1 samtools variation 1009693 1009693 . . . alleles " C T"; frequencies " 0.213333333333333 0.786666666666667"; depth 75 ; unknown ; N/A GL192965.1 samtools variation 1019942 1019942 . . . alleles " T C"; frequencies " 0.216666666666667 0.783333333333333"; depth 60 ; known ; N/A GL192965.1 samtools variation 1020107 1020107 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL192965.1 samtools variation 1032729 1032729 . . . alleles " C T"; frequencies " 0.323529411764706 0.676470588235294"; depth 34 ; unknown ; N/A GL192965.1 samtools variation 1034367 1034367 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL192965.1 samtools variation 1035209 1035209 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL192965.1 samtools variation 1035240 1035240 . . . alleles " T C"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL192965.1 samtools variation 1037409 1037409 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192965.1 samtools variation 1037889 1037889 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192966.1 samtools variation 862681 862681 . . . alleles " G T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192966.1 samtools variation 874996 874996 . . . alleles " T C"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL192966.1 samtools variation 875079 875079 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; N/A GL192966.1 samtools variation 875089 875089 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; unknown ; N/A GL192966.1 samtools variation 875713 875713 . . . alleles " C T"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL192966.1 samtools variation 875973 875973 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192966.1 samtools variation 919804 919804 . . . alleles " C G"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; known ; N/A GL192966.1 samtools variation 920814 920814 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL192966.1 samtools variation 922470 922470 . . . alleles " T C"; frequencies " 0.668341708542714 0.331658291457286"; depth 199 ; unknown ; N/A GL192966.1 samtools variation 930192 930192 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192966.1 samtools variation 930665 930665 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192966.1 samtools variation 930873 930873 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192967.1 samtools variation 562252 562252 . . . alleles " C T"; frequencies " 0.679245283018868 0.320754716981132"; depth 53 ; unknown ; N/A GL192967.1 samtools variation 570866 570866 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL192967.1 samtools variation 571006 571006 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL192967.1 samtools variation 571017 571017 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL192967.1 samtools variation 571422 571422 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL192967.1 samtools variation 573413 573413 . . . alleles " A T"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; known ; N/A GL192967.1 samtools variation 715751 715751 . . . alleles " A G"; frequencies " 0.771428571428571 0.228571428571429"; depth 70 ; known ; synonymous GL192967.1 samtools variation 719060 719060 . . . alleles " A G"; frequencies " 0.24390243902439 0.75609756097561"; depth 41 ; known ; N/A GL192967.1 samtools variation 743643 743643 . . . alleles " C T"; frequencies " 0.640845070422535 0.359154929577465"; depth 142 ; known ; N/A GL192967.1 samtools variation 744882 744882 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 68 ; unknown ; N/A GL192967.1 samtools variation 747745 747745 . . . alleles " A C"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; known ; N/A GL192967.1 samtools variation 794024 794024 . . . alleles " G A"; frequencies " 0.515151515151515 0.484848484848485"; depth 66 ; known ; synonymous GL192967.1 samtools variation 797828 797828 . . . alleles " G A"; frequencies " 0.779411764705882 0.220588235294118"; depth 68 ; unknown ; synonymous GL192967.1 samtools variation 797912 797912 . . . alleles " A G"; frequencies " 0.245901639344262 0.754098360655738"; depth 61 ; known ; synonymous GL192967.1 samtools variation 803518 803518 . . . alleles " G A"; frequencies " 0.206521739130435 0.793478260869565"; depth 92 ; known ; synonymous GL192967.1 samtools variation 805991 805991 . . . alleles " C T"; frequencies " 0.560283687943262 0.439716312056738"; depth 141 ; known ; synonymous GL192969.1 samtools variation 112844 112844 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; synonymous GL192969.1 samtools variation 112868 112868 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; synonymous GL192969.1 samtools variation 114161 114161 . . . alleles " T C"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; unknown ; synonymous GL192969.1 samtools variation 114232 114232 . . . alleles " C T"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; non-synonymous GL192969.1 samtools variation 117921 117921 . . . alleles " C T"; frequencies " 0.541666666666667 0.458333333333333"; depth 48 ; unknown ; synonymous GL192969.1 samtools variation 121186 121186 . . . alleles " A G"; frequencies " 0.580246913580247 0.419753086419753"; depth 81 ; unknown ; synonymous GL192969.1 samtools variation 131988 131988 . . . alleles " A G"; frequencies " 0.611570247933884 0.388429752066116"; depth 121 ; unknown ; N/A GL192970.1 samtools variation 423201 423201 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; known ; non-synonymous GL192971.1 samtools variation 454493 454493 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192971.1 samtools variation 455403 455403 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL192971.1 samtools variation 455873 455873 . . . alleles " C T"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; unknown ; N/A GL192971.1 samtools variation 697440 697440 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192971.1 samtools variation 698572 698572 . . . alleles " A G"; frequencies " 0.431372549019608 0.568627450980392"; depth 51 ; unknown ; N/A GL192971.1 samtools variation 896291 896291 . . . alleles " T C"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; synonymous GL192971.1 samtools variation 921985 921985 . . . alleles " C G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL192971.1 samtools variation 927857 927857 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 42 ; unknown ; synonymous GL192971.1 samtools variation 927869 927869 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 38 ; unknown ; synonymous GL192971.1 samtools variation 929055 929055 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192971.1 samtools variation 929074 929074 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192971.1 samtools variation 929212 929212 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192971.1 samtools variation 929213 929213 . . . alleles " C G"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL192971.1 samtools variation 929610 929610 . . . alleles " G A"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL192971.1 samtools variation 931959 931959 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL192971.1 samtools variation 932376 932376 . . . alleles " T A"; frequencies " 0.448979591836735 0.551020408163265"; depth 49 ; known ; N/A GL192971.1 samtools variation 933282 933282 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192971.1 samtools variation 1062951 1062951 . . . alleles " G T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192972.1 samtools variation 171628 171628 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192972.1 samtools variation 171989 171989 . . . alleles " C T"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL192972.1 samtools variation 174181 174181 . . . alleles " G C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL192972.1 samtools variation 182077 182077 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192972.1 samtools variation 183758 183758 . . . alleles " C T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL192972.1 samtools variation 185403 185403 . . . alleles " A G"; frequencies " 0.72316384180791 0.27683615819209"; depth 177 ; unknown ; synonymous GL192972.1 samtools variation 192643 192643 . . . alleles " T C"; frequencies " 0.23728813559322 0.76271186440678"; depth 59 ; unknown ; synonymous GL192972.1 samtools variation 277892 277892 . . . alleles " G A"; frequencies " 0.756756756756757 0.243243243243243"; depth 148 ; unknown ; non-synonymous GL192972.1 samtools variation 287256 287256 . . . alleles " G A"; frequencies " 0.776243093922652 0.223756906077348"; depth 362 ; unknown ; synonymous GL192972.1 samtools variation 290042 290042 . . . alleles " C T"; frequencies " 0.690909090909091 0.309090909090909"; depth 825 ; unknown ; N/A GL192972.1 samtools variation 290189 290189 . . . alleles " A G"; frequencies " 0.305263157894737 0.694736842105263"; depth 95 ; unknown ; N/A GL192972.1 samtools variation 291017 291017 . . . alleles " A T"; frequencies " 0.680851063829787 0.319148936170213"; depth 94 ; unknown ; N/A GL192972.1 samtools variation 292195 292195 . . . alleles " T G"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; N/A GL192972.1 samtools variation 292318 292318 . . . alleles " T C"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; unknown ; N/A GL192972.1 samtools variation 292590 292590 . . . alleles " G T"; frequencies " 0.772727272727273 0.227272727272727"; depth 88 ; unknown ; N/A GL192972.1 samtools variation 292854 292854 . . . alleles " C T"; frequencies " 0.462809917355372 0.537190082644628"; depth 121 ; unknown ; N/A GL192972.1 samtools variation 294709 294709 . . . alleles " C T"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL192972.1 samtools variation 296779 296779 . . . alleles " C T"; frequencies " 0.289473684210526 0.710526315789474"; depth 38 ; unknown ; N/A GL192972.1 samtools variation 297940 297940 . . . alleles " G A"; frequencies " 0.270588235294118 0.729411764705882"; depth 170 ; unknown ; N/A GL192972.1 samtools variation 298016 298016 . . . alleles " G A"; frequencies " 0.327433628318584 0.672566371681416"; depth 113 ; unknown ; N/A GL192972.1 samtools variation 298213 298213 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 54 ; unknown ; N/A GL192972.1 samtools variation 298990 298990 . . . alleles " C T"; frequencies " 0.638888888888889 0.361111111111111"; depth 108 ; unknown ; N/A GL192972.1 samtools variation 299497 299497 . . . alleles " C A"; frequencies " 0.289473684210526 0.710526315789474"; depth 38 ; unknown ; N/A GL192972.1 samtools variation 305975 305975 . . . alleles " G T"; frequencies " 0.609756097560976 0.390243902439024"; depth 123 ; unknown ; non-synonymous GL192972.1 samtools variation 306601 306601 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL192972.1 samtools variation 315957 315957 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL192972.1 samtools variation 316087 316087 . . . alleles " G A"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; unknown ; N/A GL192972.1 samtools variation 318433 318433 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192972.1 samtools variation 321071 321071 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL192972.1 samtools variation 321083 321083 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL192972.1 samtools variation 784520 784520 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; synonymous GL192972.1 samtools variation 785040 785040 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 30 ; known ; N/A GL192972.1 samtools variation 1002048 1002048 . . . alleles " C T"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; N/A GL192972.1 samtools variation 1003054 1003054 . . . alleles " T C"; frequencies " 0.568480300187617 0.431519699812383"; depth 533 ; unknown ; N/A GL192972.1 samtools variation 1010659 1010659 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192972.1 samtools variation 1012017 1012017 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192972.1 samtools variation 1013772 1013772 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL192972.1 samtools variation 1027851 1027851 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 52 ; unknown ; N/A GL192972.1 samtools variation 1028671 1028671 . . . alleles " C T"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL192972.1 samtools variation 1028800 1028800 . . . alleles " C T"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL192972.1 samtools variation 1029091 1029091 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 42 ; unknown ; N/A GL192972.1 samtools variation 1030316 1030316 . . . alleles " G C"; frequencies " 0.447368421052632 0.552631578947368"; depth 38 ; unknown ; N/A GL192972.1 samtools variation 1036590 1036590 . . . alleles " A C"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; unknown ; synonymous GL192972.1 samtools variation 1099043 1099043 . . . alleles " C T"; frequencies " 0.617647058823529 0.352941176470588"; depth 34 ; known ; N/A GL192974.1 samtools variation 242622 242622 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192975.1 samtools variation 302445 302445 . . . alleles " G T"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL192976.1 samtools variation 19695 19695 . . . alleles " C T"; frequencies " 0.277039848197343 0.722960151802656"; depth 527 ; unknown ; N/A GL192976.1 samtools variation 19731 19731 . . . alleles " C A"; frequencies " 0.244060475161987 0.755939524838013"; depth 463 ; unknown ; N/A GL192976.1 samtools variation 19912 19912 . . . alleles " A C"; frequencies " 0.271375464684015 0.728624535315985"; depth 269 ; unknown ; N/A GL192976.1 samtools variation 19928 19928 . . . alleles " G T"; frequencies " 0.293040293040293 0.706959706959707"; depth 273 ; unknown ; N/A GL192976.1 samtools variation 20130 20130 . . . alleles " T C"; frequencies " 0.261921708185053 0.737366548042705"; depth 1405 ; unknown ; N/A GL192976.1 samtools variation 20285 20285 . . . alleles " A T"; frequencies " 0.378136200716846 0.621863799283154"; depth 558 ; unknown ; N/A GL192976.1 samtools variation 20604 20604 . . . alleles " G A"; frequencies " 0.526153846153846 0.473846153846154"; depth 325 ; unknown ; N/A GL192976.1 samtools variation 23358 23358 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL192976.1 samtools variation 55629 55629 . . . alleles " A C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192977.1 samtools variation 322271 322271 . . . alleles " A G"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL192977.1 samtools variation 772286 772286 . . . alleles " T A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192977.1 samtools variation 780993 780993 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192977.1 samtools variation 808341 808341 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192977.1 samtools variation 819679 819679 . . . alleles " G C"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; known ; N/A GL192977.1 samtools variation 823714 823714 . . . alleles " A G"; frequencies " 0.525423728813559 0.474576271186441"; depth 59 ; known ; N/A GL192977.1 samtools variation 835963 835963 . . . alleles " G T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL192977.1 samtools variation 838126 838126 . . . alleles " C A"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; non-synonymous GL192977.1 samtools variation 839185 839185 . . . alleles " G C"; frequencies " 0.487179487179487 0.512820512820513"; depth 39 ; known ; N/A GL192977.1 samtools variation 840593 840593 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; non-synonymous GL192977.1 samtools variation 841731 841731 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; known ; N/A GL192977.1 samtools variation 851796 851796 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192977.1 samtools variation 853001 853001 . . . alleles " C T"; frequencies " 0.44 0.56"; depth 25 ; known ; N/A GL192977.1 samtools variation 853278 853278 . . . alleles " T C"; frequencies " 0.672727272727273 0.327272727272727"; depth 55 ; known ; N/A GL192977.1 samtools variation 853844 853844 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192977.1 samtools variation 854361 854361 . . . alleles " C G"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; known ; N/A GL192977.1 samtools variation 854484 854484 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL192977.1 samtools variation 855221 855221 . . . alleles " T C"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; known ; N/A GL192977.1 samtools variation 855603 855603 . . . alleles " A G"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; known ; N/A GL192977.1 samtools variation 856065 856065 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 40 ; known ; N/A GL192977.1 samtools variation 856075 856075 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; known ; N/A GL192977.1 samtools variation 874804 874804 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192977.1 samtools variation 907507 907507 . . . alleles " T A"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; unknown ; N/A GL192977.1 samtools variation 907578 907578 . . . alleles " C A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL192977.1 samtools variation 994912 994912 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192977.1 samtools variation 995698 995698 . . . alleles " G A"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; known ; N/A GL192977.1 samtools variation 996449 996449 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL192977.1 samtools variation 1074961 1074961 . . . alleles " G T"; frequencies " 0.380116959064327 0.619883040935672"; depth 171 ; known ; synonymous GL192979.1 samtools variation 319298 319298 . . . alleles " G A"; frequencies " 0.568965517241379 0.431034482758621"; depth 58 ; known ; synonymous GL192979.1 samtools variation 366221 366221 . . . alleles " A G"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; known ; N/A GL192979.1 samtools variation 495676 495676 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL192979.1 samtools variation 502480 502480 . . . alleles " A G"; frequencies " 0.747826086956522 0.252173913043478"; depth 115 ; known ; N/A GL192979.1 samtools variation 503234 503234 . . . alleles " G A"; frequencies " 0.587786259541985 0.412213740458015"; depth 131 ; unknown ; N/A GL192979.1 samtools variation 503300 503300 . . . alleles " T A"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL192979.1 samtools variation 883523 883523 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 176 ; unknown ; N/A GL192979.1 samtools variation 883655 883655 . . . alleles " T A"; frequencies " 0.784313725490196 0.215686274509804"; depth 102 ; unknown ; N/A GL192979.1 samtools variation 887459 887459 . . . alleles " T C"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL192979.1 samtools variation 914920 914920 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192979.1 samtools variation 946449 946449 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192979.1 samtools variation 991622 991622 . . . alleles " G T"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; known ; N/A GL192979.1 samtools variation 998740 998740 . . . alleles " A G"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; known ; N/A GL192979.1 samtools variation 1022829 1022829 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL192980.1 samtools variation 47662 47662 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL192980.1 samtools variation 74273 74273 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 85 ; known ; N/A GL192980.1 samtools variation 74315 74315 . . . alleles " G A"; frequencies " 0.270833333333333 0.729166666666667"; depth 48 ; known ; N/A GL192980.1 samtools variation 74601 74601 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 28 ; known ; N/A GL192980.1 samtools variation 77319 77319 . . . alleles " G T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192980.1 samtools variation 153439 153439 . . . alleles " G T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192980.1 samtools variation 156219 156219 . . . alleles " C T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL192980.1 samtools variation 156347 156347 . . . alleles " C G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL192980.1 samtools variation 165467 165467 . . . alleles " C T"; frequencies " 0.622103386809269 0.377896613190731"; depth 561 ; unknown ; synonymous GL192980.1 samtools variation 330955 330955 . . . alleles " G A"; frequencies " 0.517006802721088 0.482993197278912"; depth 147 ; known ; N/A GL192980.1 samtools variation 334498 334498 . . . alleles " C T"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL192980.1 samtools variation 335923 335923 . . . alleles " C T"; frequencies " 0.617021276595745 0.382978723404255"; depth 47 ; known ; N/A GL192980.1 samtools variation 336153 336153 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192980.1 samtools variation 337597 337597 . . . alleles " G A"; frequencies " 0.594249201277955 0.405750798722045"; depth 313 ; known ; synonymous GL192980.1 samtools variation 339434 339434 . . . alleles " G C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192980.1 samtools variation 344945 344945 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192980.1 samtools variation 392659 392659 . . . alleles " C A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192980.1 samtools variation 402593 402593 . . . alleles " A G"; frequencies " 0.652892561983471 0.347107438016529"; depth 121 ; known ; N/A GL192980.1 samtools variation 598210 598210 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL192980.1 samtools variation 601442 601442 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192980.1 samtools variation 606145 606145 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL192980.1 samtools variation 609666 609666 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 68 ; known ; non-synonymous GL192980.1 samtools variation 612079 612079 . . . alleles " A G"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192980.1 samtools variation 612957 612957 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192980.1 samtools variation 612974 612974 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192980.1 samtools variation 613095 613095 . . . alleles " T A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192980.1 samtools variation 621403 621403 . . . alleles " G A"; frequencies " 0.621212121212121 0.378787878787879"; depth 66 ; unknown ; synonymous GL192980.1 samtools variation 621773 621773 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192980.1 samtools variation 644035 644035 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; synonymous GL192981.1 samtools variation 817462 817462 . . . alleles " G T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192981.1 samtools variation 872992 872992 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; known ; N/A GL192981.1 samtools variation 875311 875311 . . . alleles " G A"; frequencies " 0.548076923076923 0.451923076923077"; depth 104 ; unknown ; N/A GL192981.1 samtools variation 878313 878313 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192981.1 samtools variation 878389 878389 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL192981.1 samtools variation 878549 878549 . . . alleles " G C"; frequencies " 0.607843137254902 0.392156862745098"; depth 51 ; unknown ; N/A GL192981.1 samtools variation 973836 973836 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192981.1 samtools variation 996276 996276 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL192981.1 samtools variation 1004673 1004673 . . . alleles " A T"; frequencies " 0.315789473684211 0.684210526315789"; depth 57 ; known ; N/A GL192981.1 samtools variation 1004884 1004884 . . . alleles " C T"; frequencies " 0.721518987341772 0.278481012658228"; depth 79 ; unknown ; N/A GL192981.1 samtools variation 1005312 1005312 . . . alleles " C T"; frequencies " 0.682692307692308 0.317307692307692"; depth 104 ; unknown ; N/A GL192981.1 samtools variation 1007273 1007273 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL192981.1 samtools variation 1008544 1008544 . . . alleles " T A"; frequencies " 0.785714285714286 0.214285714285714"; depth 126 ; unknown ; N/A GL192981.1 samtools variation 1008661 1008661 . . . alleles " G A"; frequencies " 0.757763975155279 0.242236024844721"; depth 161 ; unknown ; N/A GL192981.1 samtools variation 1012579 1012579 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192981.1 samtools variation 1012642 1012642 . . . alleles " G T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL192981.1 samtools variation 1012652 1012652 . . . alleles " T C"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL192981.1 samtools variation 1013569 1013569 . . . alleles " A G"; frequencies " 0.490196078431373 0.509803921568627"; depth 51 ; known ; N/A GL192981.1 samtools variation 1015104 1015104 . . . alleles " T G"; frequencies " 0.509090909090909 0.490909090909091"; depth 55 ; known ; N/A GL192981.1 samtools variation 1015151 1015151 . . . alleles " C A"; frequencies " 0.732142857142857 0.267857142857143"; depth 56 ; unknown ; N/A GL192981.1 samtools variation 1022038 1022038 . . . alleles " A C"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; unknown ; N/A GL192981.1 samtools variation 1022693 1022693 . . . alleles " C G"; frequencies " 0.2 0.8"; depth 30 ; unknown ; N/A GL192981.1 samtools variation 1023426 1023426 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 48 ; unknown ; N/A GL192981.1 samtools variation 1023499 1023499 . . . alleles " A G"; frequencies " 0.23943661971831 0.76056338028169"; depth 71 ; known ; N/A GL192981.1 samtools variation 1024406 1024406 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 32 ; unknown ; N/A GL192981.1 samtools variation 1024562 1024562 . . . alleles " G A"; frequencies " 0.222222222222222 0.777777777777778"; depth 81 ; unknown ; N/A GL192981.1 samtools variation 1073422 1073422 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192981.1 samtools variation 1073664 1073664 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL192981.1 samtools variation 1073761 1073761 . . . alleles " T C"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; known ; N/A GL192981.1 samtools variation 1089571 1089571 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192984.1 samtools variation 50782 50782 . . . alleles " C T"; frequencies " 0.440677966101695 0.559322033898305"; depth 59 ; known ; N/A GL192984.1 samtools variation 51360 51360 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192984.1 samtools variation 51844 51844 . . . alleles " G A"; frequencies " 0.676923076923077 0.323076923076923"; depth 65 ; unknown ; non-synonymous GL192984.1 samtools variation 52491 52491 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192984.1 samtools variation 117681 117681 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; non-synonymous GL192984.1 samtools variation 119876 119876 . . . alleles " A C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL192984.1 samtools variation 120190 120190 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192984.1 samtools variation 121805 121805 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL192984.1 samtools variation 159145 159145 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192984.1 samtools variation 162968 162968 . . . alleles " C G"; frequencies " 0.291666666666667 0.708333333333333"; depth 48 ; known ; N/A GL192984.1 samtools variation 195300 195300 . . . alleles " G A"; frequencies " 0.493827160493827 0.506172839506173"; depth 324 ; unknown ; N/A GL192984.1 samtools variation 201641 201641 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL192984.1 samtools variation 231719 231719 . . . alleles " G A"; frequencies " 0.659340659340659 0.340659340659341"; depth 91 ; unknown ; N/A GL192984.1 samtools variation 233239 233239 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192984.1 samtools variation 233269 233269 . . . alleles " T C"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; known ; N/A GL192984.1 samtools variation 236980 236980 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL192984.1 samtools variation 237753 237753 . . . alleles " A C"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192984.1 samtools variation 249624 249624 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192984.1 samtools variation 257960 257960 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL192984.1 samtools variation 327461 327461 . . . alleles " T C"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; N/A GL192984.1 samtools variation 327466 327466 . . . alleles " C G"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; known ; N/A GL192984.1 samtools variation 381290 381290 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 20 ; known ; synonymous GL192984.1 samtools variation 381347 381347 . . . alleles " T C"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; synonymous GL192984.1 samtools variation 381804 381804 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL192984.1 samtools variation 382861 382861 . . . alleles " A G"; frequencies " 0.508771929824561 0.491228070175439"; depth 57 ; unknown ; N/A GL192984.1 samtools variation 385537 385537 . . . alleles " C G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192984.1 samtools variation 387036 387036 . . . alleles " A T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192984.1 samtools variation 387732 387732 . . . alleles " G A"; frequencies " 0.790940766550523 0.209059233449477"; depth 574 ; unknown ; synonymous GL192984.1 samtools variation 388517 388517 . . . alleles " A G"; frequencies " 0.527950310559006 0.472049689440994"; depth 161 ; unknown ; synonymous GL192984.1 samtools variation 388824 388824 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192984.1 samtools variation 389137 389137 . . . alleles " T G"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL192984.1 samtools variation 390149 390149 . . . alleles " C T"; frequencies " 0.771084337349398 0.216867469879518"; depth 83 ; unknown ; N/A GL192984.1 samtools variation 391917 391917 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL192984.1 samtools variation 392065 392065 . . . alleles " G T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL192984.1 samtools variation 392548 392548 . . . alleles " G A"; frequencies " 0.770491803278688 0.229508196721311"; depth 61 ; unknown ; N/A GL192984.1 samtools variation 395531 395531 . . . alleles " G A"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192984.1 samtools variation 416795 416795 . . . alleles " C T"; frequencies " 0.268817204301075 0.731182795698925"; depth 93 ; known ; N/A GL192984.1 samtools variation 545492 545492 . . . alleles " C T"; frequencies " 0.470394736842105 0.529605263157895"; depth 304 ; known ; synonymous GL192984.1 samtools variation 548779 548779 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL192984.1 samtools variation 554268 554268 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192984.1 samtools variation 559129 559129 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192984.1 samtools variation 562587 562587 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; known ; N/A GL192984.1 samtools variation 567752 567752 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192984.1 samtools variation 576526 576526 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 182 ; unknown ; synonymous GL192984.1 samtools variation 578170 578170 . . . alleles " T C"; frequencies " 0.449115044247788 0.550884955752212"; depth 452 ; known ; N/A GL192984.1 samtools variation 578208 578208 . . . alleles " C T"; frequencies " 0.707964601769911 0.292035398230089"; depth 452 ; known ; N/A GL192984.1 samtools variation 580588 580588 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192984.1 samtools variation 581990 581990 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 34 ; known ; N/A GL192984.1 samtools variation 582519 582519 . . . alleles " C T"; frequencies " 0.468085106382979 0.531914893617021"; depth 47 ; known ; N/A GL192984.1 samtools variation 826286 826286 . . . alleles " G C"; frequencies " 0.738095238095238 0.261904761904762"; depth 84 ; known ; N/A GL192984.1 samtools variation 827466 827466 . . . alleles " T G"; frequencies " 0.606837606837607 0.393162393162393"; depth 117 ; known ; N/A GL192984.1 samtools variation 827520 827520 . . . alleles " T C"; frequencies " 0.755555555555556 0.244444444444444"; depth 135 ; unknown ; N/A GL192984.1 samtools variation 827660 827660 . . . alleles " C T"; frequencies " 0.610526315789474 0.389473684210526"; depth 95 ; known ; N/A GL192984.1 samtools variation 828462 828462 . . . alleles " T G"; frequencies " 0.46078431372549 0.53921568627451"; depth 102 ; known ; N/A GL192984.1 samtools variation 828814 828814 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; known ; N/A GL192984.1 samtools variation 828886 828886 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL192984.1 samtools variation 828956 828956 . . . alleles " T C"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; known ; N/A GL192984.1 samtools variation 829033 829033 . . . alleles " T C"; frequencies " 0.389423076923077 0.610576923076923"; depth 208 ; known ; N/A GL192984.1 samtools variation 829094 829094 . . . alleles " A G"; frequencies " 0.526813880126183 0.473186119873817"; depth 317 ; known ; N/A GL192984.1 samtools variation 829436 829436 . . . alleles " G A"; frequencies " 0.532871972318339 0.467128027681661"; depth 289 ; known ; N/A GL192984.1 samtools variation 829601 829601 . . . alleles " T C"; frequencies " 0.515923566878981 0.484076433121019"; depth 314 ; known ; N/A GL192984.1 samtools variation 829736 829736 . . . alleles " C T"; frequencies " 0.580952380952381 0.419047619047619"; depth 105 ; known ; N/A GL192984.1 samtools variation 830005 830005 . . . alleles " G A"; frequencies " 0.493087557603687 0.506912442396313"; depth 434 ; known ; N/A GL192984.1 samtools variation 830012 830012 . . . alleles " G C"; frequencies " 0.497641509433962 0.502358490566038"; depth 424 ; known ; N/A GL192984.1 samtools variation 830029 830029 . . . alleles " G A"; frequencies " 0.69248291571754 0.30751708428246"; depth 439 ; unknown ; N/A GL192984.1 samtools variation 830058 830058 . . . alleles " G A"; frequencies " 0.532066508313539 0.467933491686461"; depth 421 ; known ; N/A GL192984.1 samtools variation 830344 830344 . . . alleles " G C"; frequencies " 0.46969696969697 0.53030303030303"; depth 330 ; known ; N/A GL192984.1 samtools variation 830397 830397 . . . alleles " T C"; frequencies " 0.599476439790576 0.397905759162304"; depth 382 ; known ; N/A GL192984.1 samtools variation 830442 830442 . . . alleles " C T"; frequencies " 0.412429378531073 0.587570621468927"; depth 354 ; known ; N/A GL192984.1 samtools variation 830506 830506 . . . alleles " A C"; frequencies " 0.379912663755459 0.620087336244541"; depth 229 ; known ; N/A GL192984.1 samtools variation 830611 830611 . . . alleles " A G"; frequencies " 0.534246575342466 0.465753424657534"; depth 73 ; known ; N/A GL192984.1 samtools variation 830727 830727 . . . alleles " G T"; frequencies " 0.507142857142857 0.492857142857143"; depth 140 ; known ; N/A GL192984.1 samtools variation 830731 830731 . . . alleles " T C"; frequencies " 0.795774647887324 0.204225352112676"; depth 142 ; unknown ; N/A GL192984.1 samtools variation 831192 831192 . . . alleles " G A"; frequencies " 0.677966101694915 0.322033898305085"; depth 59 ; known ; synonymous GL192984.1 samtools variation 831261 831261 . . . alleles " C G"; frequencies " 0.670212765957447 0.329787234042553"; depth 94 ; known ; synonymous GL192984.1 samtools variation 831291 831291 . . . alleles " A G"; frequencies " 0.592105263157895 0.407894736842105"; depth 76 ; known ; synonymous GL192984.1 samtools variation 831879 831879 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; known ; N/A GL192984.1 samtools variation 832938 832938 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL192984.1 samtools variation 836560 836560 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL192984.1 samtools variation 839419 839419 . . . alleles " G A"; frequencies " 0.386440677966102 0.613559322033898"; depth 590 ; known ; N/A GL192984.1 samtools variation 839500 839500 . . . alleles " T C"; frequencies " 0.629353233830846 0.370646766169154"; depth 402 ; known ; N/A GL192984.1 samtools variation 839661 839661 . . . alleles " A G"; frequencies " 0.751479289940828 0.248520710059172"; depth 676 ; unknown ; N/A GL192984.1 samtools variation 840503 840503 . . . alleles " G A"; frequencies " 0.71830985915493 0.28169014084507"; depth 142 ; unknown ; N/A GL192984.1 samtools variation 840506 840506 . . . alleles " A G"; frequencies " 0.704225352112676 0.295774647887324"; depth 142 ; unknown ; N/A GL192984.1 samtools variation 841835 841835 . . . alleles " C A"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; known ; N/A GL192984.1 samtools variation 842008 842008 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; known ; N/A GL192984.1 samtools variation 842782 842782 . . . alleles " T C"; frequencies " 0.723076923076923 0.276923076923077"; depth 65 ; known ; N/A GL192984.1 samtools variation 846348 846348 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 30 ; known ; N/A GL192984.1 samtools variation 847189 847189 . . . alleles " T C"; frequencies " 0.245098039215686 0.754901960784314"; depth 102 ; known ; N/A GL192984.1 samtools variation 847755 847755 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 38 ; known ; N/A GL192984.1 samtools variation 849670 849670 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL192984.1 samtools variation 849884 849884 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192984.1 samtools variation 850114 850114 . . . alleles " A T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192984.1 samtools variation 850327 850327 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 284 ; unknown ; synonymous GL192984.1 samtools variation 850335 850335 . . . alleles " G T"; frequencies " 0.696793002915452 0.303206997084548"; depth 343 ; unknown ; non-synonymous GL192984.1 samtools variation 858415 858415 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192984.1 samtools variation 919283 919283 . . . alleles " A C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192984.1 samtools variation 919285 919285 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL192984.1 samtools variation 925862 925862 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 20 ; known ; N/A GL192984.1 samtools variation 926161 926161 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL192987.1 samtools variation 192564 192564 . . . alleles " G C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192987.1 samtools variation 475258 475258 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 125 ; known ; N/A GL192987.1 samtools variation 480124 480124 . . . alleles " A G"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL192987.1 samtools variation 480889 480889 . . . alleles " C G"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; known ; N/A GL192987.1 samtools variation 481134 481134 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192987.1 samtools variation 482365 482365 . . . alleles " C T"; frequencies " 0.28 0.72"; depth 25 ; known ; N/A GL192987.1 samtools variation 482506 482506 . . . alleles " C T"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; known ; N/A GL192987.1 samtools variation 483497 483497 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL192987.1 samtools variation 483555 483555 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192987.1 samtools variation 503200 503200 . . . alleles " C T"; frequencies " 0.229166666666667 0.770833333333333"; depth 48 ; unknown ; N/A GL192987.1 samtools variation 503855 503855 . . . alleles " A G"; frequencies " 0.315789473684211 0.631578947368421"; depth 19 ; unknown ; N/A GL192987.1 samtools variation 512144 512144 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192987.1 samtools variation 604266 604266 . . . alleles " G A"; frequencies " 0.204819277108434 0.795180722891566"; depth 166 ; known ; N/A GL192987.1 samtools variation 604854 604854 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL192987.1 samtools variation 604910 604910 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; unknown ; N/A GL192987.1 samtools variation 617693 617693 . . . alleles " A G"; frequencies " 0.425925925925926 0.574074074074074"; depth 54 ; unknown ; N/A GL192987.1 samtools variation 618018 618018 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 30 ; known ; N/A GL192987.1 samtools variation 676447 676447 . . . alleles " T C"; frequencies " 0.766129032258065 0.233870967741935"; depth 372 ; unknown ; N/A GL192987.1 samtools variation 678010 678010 . . . alleles " C T"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL192987.1 samtools variation 700254 700254 . . . alleles " C G"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL192987.1 samtools variation 700972 700972 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192987.1 samtools variation 707403 707403 . . . alleles " C T"; frequencies " 0.740740740740741 0.259259259259259"; depth 54 ; known ; synonymous GL192987.1 samtools variation 787551 787551 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192987.1 samtools variation 787575 787575 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192987.1 samtools variation 788166 788166 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192987.1 samtools variation 788805 788805 . . . alleles " T G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192987.1 samtools variation 794115 794115 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 56 ; unknown ; N/A GL192987.1 samtools variation 794129 794129 . . . alleles " T A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL192987.1 samtools variation 794914 794914 . . . alleles " G A"; frequencies " 0.491803278688525 0.508196721311475"; depth 61 ; unknown ; N/A GL192987.1 samtools variation 798858 798858 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192987.1 samtools variation 799203 799203 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192987.1 samtools variation 799974 799974 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192987.1 samtools variation 807979 807979 . . . alleles " A C"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL192987.1 samtools variation 925539 925539 . . . alleles " T C"; frequencies " 0.253164556962025 0.746835443037975"; depth 79 ; known ; synonymous GL192987.1 samtools variation 932042 932042 . . . alleles " T C"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL192987.1 samtools variation 932306 932306 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192987.1 samtools variation 936357 936357 . . . alleles " C T"; frequencies " 0.790123456790123 0.209876543209877"; depth 243 ; unknown ; N/A GL192987.1 samtools variation 936738 936738 . . . alleles " T A"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; known ; N/A GL192987.1 samtools variation 938588 938588 . . . alleles " C T"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; N/A GL192987.1 samtools variation 973550 973550 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192987.1 samtools variation 974031 974031 . . . alleles " C T"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL192988.1 samtools variation 789010 789010 . . . alleles " G T"; frequencies " 0.766355140186916 0.233644859813084"; depth 107 ; unknown ; N/A GL192988.1 samtools variation 789125 789125 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 46 ; unknown ; N/A GL192988.1 samtools variation 789205 789205 . . . alleles " C A"; frequencies " 0.777777777777778 0.222222222222222"; depth 81 ; unknown ; N/A GL192988.1 samtools variation 789803 789803 . . . alleles " G A"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; N/A GL192988.1 samtools variation 791479 791479 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL192988.1 samtools variation 792001 792001 . . . alleles " G T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192988.1 samtools variation 792687 792687 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL192988.1 samtools variation 793653 793653 . . . alleles " T C"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL192988.1 samtools variation 794584 794584 . . . alleles " T C"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL192988.1 samtools variation 817600 817600 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL192988.1 samtools variation 820152 820152 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL192988.1 samtools variation 820658 820658 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192988.1 samtools variation 824796 824796 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; known ; N/A GL192988.1 samtools variation 824827 824827 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 60 ; known ; N/A GL192988.1 samtools variation 825067 825067 . . . alleles " A G"; frequencies " 0.228070175438596 0.771929824561403"; depth 57 ; known ; N/A GL192988.1 samtools variation 825079 825079 . . . alleles " C T"; frequencies " 0.23728813559322 0.76271186440678"; depth 59 ; known ; N/A GL192988.1 samtools variation 825893 825893 . . . alleles " A G"; frequencies " 0.758241758241758 0.241758241758242"; depth 91 ; known ; N/A GL192988.1 samtools variation 1079060 1079060 . . . alleles " G A"; frequencies " 0.62 0.38"; depth 50 ; unknown ; N/A GL192988.1 samtools variation 1079692 1079692 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL192988.1 samtools variation 1079730 1079730 . . . alleles " G C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192988.1 samtools variation 1079814 1079814 . . . alleles " A G"; frequencies " 0.616666666666667 0.383333333333333"; depth 60 ; unknown ; N/A GL192988.1 samtools variation 1087836 1087836 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; synonymous GL192988.1 samtools variation 1094952 1094952 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; synonymous GL192988.1 samtools variation 1096367 1096367 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; synonymous GL192989.1 samtools variation 53209 53209 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192989.1 samtools variation 166385 166385 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL192989.1 samtools variation 166557 166557 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 24 ; known ; N/A GL192989.1 samtools variation 256071 256071 . . . alleles " G T"; frequencies " 0.507692307692308 0.492307692307692"; depth 65 ; unknown ; non-synonymous GL192989.1 samtools variation 256271 256271 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 39 ; unknown ; N/A GL192989.1 samtools variation 264892 264892 . . . alleles " G C"; frequencies " 0.548571428571429 0.445714285714286"; depth 175 ; unknown ; synonymous GL192989.1 samtools variation 268049 268049 . . . alleles " C A"; frequencies " 0.760869565217391 0.239130434782609"; depth 46 ; unknown ; non-synonymous GL192989.1 samtools variation 268520 268520 . . . alleles " G A"; frequencies " 0.781818181818182 0.218181818181818"; depth 110 ; unknown ; N/A GL192989.1 samtools variation 282522 282522 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192989.1 samtools variation 301827 301827 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192989.1 samtools variation 301936 301936 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192989.1 samtools variation 339631 339631 . . . alleles " G A"; frequencies " 0.676923076923077 0.323076923076923"; depth 65 ; unknown ; non-synonymous GL192989.1 samtools variation 371152 371152 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 68 ; known ; non-synonymous GL192989.1 samtools variation 408828 408828 . . . alleles " C T"; frequencies " 0.754528985507246 0.245471014492754"; depth 1104 ; unknown ; N/A GL192989.1 samtools variation 509374 509374 . . . alleles " G T"; frequencies " 0.346666666666667 0.653333333333333"; depth 75 ; unknown ; N/A GL192989.1 samtools variation 524270 524270 . . . alleles " G A"; frequencies " 0.388235294117647 0.611764705882353"; depth 425 ; unknown ; non-synonymous GL192989.1 samtools variation 549896 549896 . . . alleles " T A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192989.1 samtools variation 753447 753447 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL192989.1 samtools variation 776820 776820 . . . alleles " G A"; frequencies " 0.779329608938548 0.220670391061453"; depth 716 ; unknown ; synonymous GL192989.1 samtools variation 815724 815724 . . . alleles " C T"; frequencies " 0.772058823529412 0.227941176470588"; depth 136 ; unknown ; non-synonymous GL192989.1 samtools variation 858054 858054 . . . alleles " C T"; frequencies " 0.546468401486989 0.453531598513011"; depth 269 ; unknown ; N/A GL192992.1 samtools variation 124583 124583 . . . alleles " C G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL192992.1 samtools variation 177467 177467 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL192992.1 samtools variation 213594 213594 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192992.1 samtools variation 219673 219673 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; known ; N/A GL192992.1 samtools variation 220146 220146 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; N/A GL192992.1 samtools variation 220235 220235 . . . alleles " C A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192992.1 samtools variation 221788 221788 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192992.1 samtools variation 223084 223084 . . . alleles " T C"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL192992.1 samtools variation 223644 223644 . . . alleles " G A"; frequencies " 0.325581395348837 0.674418604651163"; depth 43 ; known ; N/A GL192992.1 samtools variation 223710 223710 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL192992.1 samtools variation 223842 223842 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192992.1 samtools variation 224515 224515 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192992.1 samtools variation 224914 224914 . . . alleles " G A"; frequencies " 0.673913043478261 0.326086956521739"; depth 46 ; known ; N/A GL192992.1 samtools variation 225013 225013 . . . alleles " G C"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL192992.1 samtools variation 225080 225080 . . . alleles " T C"; frequencies " 0.43859649122807 0.56140350877193"; depth 57 ; known ; N/A GL192992.1 samtools variation 225097 225097 . . . alleles " T A"; frequencies " 0.596491228070175 0.403508771929825"; depth 57 ; known ; N/A GL192992.1 samtools variation 226018 226018 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 88 ; unknown ; N/A GL192992.1 samtools variation 226302 226302 . . . alleles " G A"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; known ; N/A GL192992.1 samtools variation 226726 226726 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192992.1 samtools variation 226740 226740 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL192992.1 samtools variation 227397 227397 . . . alleles " A G"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; known ; N/A GL192992.1 samtools variation 228069 228069 . . . alleles " A G"; frequencies " 0.543478260869565 0.456521739130435"; depth 46 ; known ; N/A GL192992.1 samtools variation 228367 228367 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 39 ; known ; N/A GL192992.1 samtools variation 229462 229462 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 69 ; known ; N/A GL192992.1 samtools variation 230413 230413 . . . alleles " C G"; frequencies " 0.53804347826087 0.46195652173913"; depth 184 ; known ; N/A GL192992.1 samtools variation 231438 231438 . . . alleles " A C"; frequencies " 0.405405405405405 0.594594594594595"; depth 74 ; known ; N/A GL192992.1 samtools variation 234218 234218 . . . alleles " A T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL192992.1 samtools variation 953305 953305 . . . alleles " T C"; frequencies " 0.434210526315789 0.565789473684211"; depth 76 ; known ; synonymous GL192992.1 samtools variation 986504 986504 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192992.1 samtools variation 1004530 1004530 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL192992.1 samtools variation 1004910 1004910 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192992.1 samtools variation 1004912 1004912 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL192992.1 samtools variation 1005107 1005107 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL192993.1 samtools variation 557211 557211 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192993.1 samtools variation 742932 742932 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL192993.1 samtools variation 765274 765274 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192993.1 samtools variation 765275 765275 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL192993.1 samtools variation 765808 765808 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL192993.1 samtools variation 824607 824607 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL192993.1 samtools variation 826395 826395 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL192993.1 samtools variation 829295 829295 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192993.1 samtools variation 841520 841520 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL192993.1 samtools variation 841521 841521 . . . alleles " G C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL192993.1 samtools variation 843491 843491 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192993.1 samtools variation 916811 916811 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL192993.1 samtools variation 927505 927505 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192993.1 samtools variation 937048 937048 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL192993.1 samtools variation 937448 937448 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL192993.1 samtools variation 970098 970098 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL192993.1 samtools variation 971472 971472 . . . alleles " C G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192993.1 samtools variation 976329 976329 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL192993.1 samtools variation 976761 976761 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192993.1 samtools variation 982609 982609 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL192993.1 samtools variation 983960 983960 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL192993.1 samtools variation 984019 984019 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL192993.1 samtools variation 986101 986101 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192993.1 samtools variation 986593 986593 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL192993.1 samtools variation 988701 988701 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192995.1 samtools variation 12150 12150 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL192995.1 samtools variation 12374 12374 . . . alleles " T C"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL192995.1 samtools variation 12378 12378 . . . alleles " A G"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL192995.1 samtools variation 12382 12382 . . . alleles " C T"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL192995.1 samtools variation 12531 12531 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL192995.1 samtools variation 12552 12552 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL192995.1 samtools variation 15729 15729 . . . alleles " T C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL192995.1 samtools variation 15807 15807 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL192995.1 samtools variation 15850 15850 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL192995.1 samtools variation 16347 16347 . . . alleles " G A"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL192995.1 samtools variation 16383 16383 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL192995.1 samtools variation 16402 16402 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL192995.1 samtools variation 1033253 1033253 . . . alleles " C A"; frequencies " 0.552941176470588 0.447058823529412"; depth 85 ; unknown ; N/A GL192996.1 samtools variation 787982 787982 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL192996.1 samtools variation 788519 788519 . . . alleles " G A"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; unknown ; N/A GL192996.1 samtools variation 788522 788522 . . . alleles " C G"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; unknown ; N/A GL192996.1 samtools variation 789816 789816 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 84 ; known ; N/A GL192996.1 samtools variation 790398 790398 . . . alleles " G A"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; unknown ; non-synonymous GL192997.1 samtools variation 812030 812030 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 58 ; known ; N/A GL192997.1 samtools variation 1022997 1022997 . . . alleles " T C"; frequencies " 0.780269058295964 0.219730941704036"; depth 223 ; unknown ; N/A GL192998.1 samtools variation 311848 311848 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192999.1 samtools variation 333753 333753 . . . alleles " T G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL192999.1 samtools variation 333762 333762 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL192999.1 samtools variation 333869 333869 . . . alleles " A G"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; known ; N/A GL192999.1 samtools variation 334393 334393 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL192999.1 samtools variation 334682 334682 . . . alleles " A G"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; known ; N/A GL192999.1 samtools variation 334746 334746 . . . alleles " G A"; frequencies " 0.485714285714286 0.514285714285714"; depth 70 ; known ; N/A GL192999.1 samtools variation 334747 334747 . . . alleles " T C"; frequencies " 0.690140845070423 0.309859154929577"; depth 71 ; unknown ; N/A GL192999.1 samtools variation 334908 334908 . . . alleles " G A"; frequencies " 0.753086419753086 0.246913580246914"; depth 81 ; known ; N/A GL192999.1 samtools variation 335518 335518 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 55 ; unknown ; N/A GL192999.1 samtools variation 336317 336317 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192999.1 samtools variation 338414 338414 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192999.1 samtools variation 339682 339682 . . . alleles " A G"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; N/A GL192999.1 samtools variation 339748 339748 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 39 ; known ; N/A GL192999.1 samtools variation 342475 342475 . . . alleles " G T"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL192999.1 samtools variation 343202 343202 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL192999.1 samtools variation 343257 343257 . . . alleles " C G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL192999.1 samtools variation 343351 343351 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL192999.1 samtools variation 343528 343528 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL192999.1 samtools variation 344252 344252 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL192999.1 samtools variation 344424 344424 . . . alleles " T A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL192999.1 samtools variation 344433 344433 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL192999.1 samtools variation 344566 344566 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL192999.1 samtools variation 344772 344772 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192999.1 samtools variation 345146 345146 . . . alleles " A G"; frequencies " 0.703703703703704 0.296296296296296"; depth 81 ; unknown ; N/A GL192999.1 samtools variation 345163 345163 . . . alleles " A G"; frequencies " 0.702702702702703 0.297297297297297"; depth 74 ; unknown ; N/A GL192999.1 samtools variation 345484 345484 . . . alleles " G A"; frequencies " 0.738461538461539 0.261538461538462"; depth 65 ; unknown ; N/A GL192999.1 samtools variation 345485 345485 . . . alleles " C T"; frequencies " 0.746268656716418 0.253731343283582"; depth 67 ; unknown ; N/A GL192999.1 samtools variation 346416 346416 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL192999.1 samtools variation 349174 349174 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL192999.1 samtools variation 350053 350053 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL192999.1 samtools variation 350567 350567 . . . alleles " C T"; frequencies " 0.553846153846154 0.446153846153846"; depth 260 ; known ; synonymous GL192999.1 samtools variation 351208 351208 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL192999.1 samtools variation 501393 501393 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL192999.1 samtools variation 506486 506486 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL192999.1 samtools variation 507182 507182 . . . alleles " G C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL192999.1 samtools variation 509400 509400 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; unknown ; N/A GL192999.1 samtools variation 509639 509639 . . . alleles " A C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL192999.1 samtools variation 510451 510451 . . . alleles " G A"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL192999.1 samtools variation 511653 511653 . . . alleles " G A"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL192999.1 samtools variation 511738 511738 . . . alleles " A T"; frequencies " 0.775 0.225"; depth 40 ; unknown ; N/A GL192999.1 samtools variation 513184 513184 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 49 ; unknown ; N/A GL192999.1 samtools variation 514079 514079 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL192999.1 samtools variation 515190 515190 . . . alleles " G A"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL192999.1 samtools variation 528437 528437 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL192999.1 samtools variation 534024 534024 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 54 ; unknown ; non-synonymous GL192999.1 samtools variation 534046 534046 . . . alleles " C A"; frequencies " 0.342465753424658 0.657534246575342"; depth 73 ; unknown ; synonymous GL192999.1 samtools variation 578721 578721 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL192999.1 samtools variation 604117 604117 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192999.1 samtools variation 604138 604138 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL192999.1 samtools variation 604223 604223 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL192999.1 samtools variation 604605 604605 . . . alleles " T G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL192999.1 samtools variation 604822 604822 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL192999.1 samtools variation 604834 604834 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL192999.1 samtools variation 604909 604909 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL192999.1 samtools variation 605425 605425 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL192999.1 samtools variation 605504 605504 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 40 ; known ; N/A GL192999.1 samtools variation 605525 605525 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; known ; N/A GL192999.1 samtools variation 605546 605546 . . . alleles " G C"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL192999.1 samtools variation 606240 606240 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192999.1 samtools variation 606367 606367 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL192999.1 samtools variation 606377 606377 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL192999.1 samtools variation 606938 606938 . . . alleles " A G"; frequencies " 0.675 0.325"; depth 40 ; known ; N/A GL192999.1 samtools variation 607006 607006 . . . alleles " G C"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; known ; N/A GL192999.1 samtools variation 607040 607040 . . . alleles " G T"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; known ; N/A GL192999.1 samtools variation 607186 607186 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192999.1 samtools variation 607188 607188 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL192999.1 samtools variation 607547 607547 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL192999.1 samtools variation 607691 607691 . . . alleles " A G"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; known ; N/A GL192999.1 samtools variation 607784 607784 . . . alleles " T C"; frequencies " 0.46875 0.53125"; depth 32 ; known ; N/A GL192999.1 samtools variation 609100 609100 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL192999.1 samtools variation 609187 609187 . . . alleles " C A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL192999.1 samtools variation 609762 609762 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL192999.1 samtools variation 610317 610317 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL192999.1 samtools variation 611009 611009 . . . alleles " G T"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL192999.1 samtools variation 611407 611407 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL192999.1 samtools variation 612849 612849 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL192999.1 samtools variation 625797 625797 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL192999.1 samtools variation 625835 625835 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL192999.1 samtools variation 625882 625882 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL192999.1 samtools variation 638083 638083 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL192999.1 samtools variation 666681 666681 . . . alleles " G T"; frequencies " 0.34375 0.65625"; depth 32 ; known ; N/A GL192999.1 samtools variation 678583 678583 . . . alleles " C T"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; known ; N/A GL192999.1 samtools variation 699057 699057 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL192999.1 samtools variation 699181 699181 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192999.1 samtools variation 718280 718280 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL192999.1 samtools variation 743628 743628 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL192999.1 samtools variation 754562 754562 . . . alleles " A G"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL192999.1 samtools variation 816461 816461 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL192999.1 samtools variation 817563 817563 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL192999.1 samtools variation 818327 818327 . . . alleles " T G"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; known ; N/A GL192999.1 samtools variation 823064 823064 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL192999.1 samtools variation 823582 823582 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL192999.1 samtools variation 858656 858656 . . . alleles " T G"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL192999.1 samtools variation 859145 859145 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL192999.1 samtools variation 870116 870116 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL192999.1 samtools variation 877284 877284 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL192999.1 samtools variation 880248 880248 . . . alleles " T C"; frequencies " 0.781818181818182 0.218181818181818"; depth 55 ; unknown ; N/A GL192999.1 samtools variation 880869 880869 . . . alleles " T C"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; known ; N/A GL192999.1 samtools variation 882509 882509 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL192999.1 samtools variation 882579 882579 . . . alleles " C G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL192999.1 samtools variation 882768 882768 . . . alleles " G A"; frequencies " 0.582089552238806 0.417910447761194"; depth 67 ; unknown ; N/A GL192999.1 samtools variation 889502 889502 . . . alleles " C G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL192999.1 samtools variation 891779 891779 . . . alleles " C G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193000.1 samtools variation 130510 130510 . . . alleles " G A"; frequencies " 0.403846153846154 0.596153846153846"; depth 52 ; unknown ; non-synonymous GL193000.1 samtools variation 192564 192564 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193000.1 samtools variation 192600 192600 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193001.1 samtools variation 62227 62227 . . . alleles " G A"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; synonymous GL193001.1 samtools variation 106714 106714 . . . alleles " G A"; frequencies " 0.782178217821782 0.217821782178218"; depth 101 ; unknown ; synonymous GL193001.1 samtools variation 255195 255195 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193001.1 samtools variation 255209 255209 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193001.1 samtools variation 259365 259365 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193001.1 samtools variation 259674 259674 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL193001.1 samtools variation 263255 263255 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193001.1 samtools variation 263725 263725 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193001.1 samtools variation 352931 352931 . . . alleles " C T"; frequencies " 0.673684210526316 0.326315789473684"; depth 95 ; unknown ; N/A GL193001.1 samtools variation 352955 352955 . . . alleles " T C"; frequencies " 0.656716417910448 0.343283582089552"; depth 67 ; unknown ; N/A GL193001.1 samtools variation 386962 386962 . . . alleles " G T"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; unknown ; synonymous GL193001.1 samtools variation 386983 386983 . . . alleles " T A"; frequencies " 0.612244897959184 0.387755102040816"; depth 49 ; unknown ; synonymous GL193001.1 samtools variation 453406 453406 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193001.1 samtools variation 461580 461580 . . . alleles " G A"; frequencies " 0.596153846153846 0.403846153846154"; depth 156 ; unknown ; synonymous GL193001.1 samtools variation 461746 461746 . . . alleles " G A"; frequencies " 0.708955223880597 0.291044776119403"; depth 134 ; unknown ; N/A GL193001.1 samtools variation 462457 462457 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193001.1 samtools variation 462898 462898 . . . alleles " T C"; frequencies " 0.703296703296703 0.296703296703297"; depth 273 ; unknown ; N/A GL193001.1 samtools variation 464757 464757 . . . alleles " T C"; frequencies " 0.787671232876712 0.212328767123288"; depth 146 ; unknown ; N/A GL193001.1 samtools variation 464895 464895 . . . alleles " C A"; frequencies " 0.721311475409836 0.278688524590164"; depth 122 ; unknown ; N/A GL193001.1 samtools variation 465143 465143 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL193001.1 samtools variation 465586 465586 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 144 ; unknown ; N/A GL193001.1 samtools variation 466329 466329 . . . alleles " C G"; frequencies " 0.612903225806452 0.387096774193548"; depth 62 ; unknown ; N/A GL193001.1 samtools variation 466420 466420 . . . alleles " A G"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193001.1 samtools variation 466720 466720 . . . alleles " G A"; frequencies " 0.616666666666667 0.383333333333333"; depth 60 ; unknown ; N/A GL193001.1 samtools variation 466777 466777 . . . alleles " G C"; frequencies " 0.588235294117647 0.411764705882353"; depth 51 ; unknown ; N/A GL193001.1 samtools variation 466996 466996 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; non-synonymous GL193001.1 samtools variation 470227 470227 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL193001.1 samtools variation 471927 471927 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193001.1 samtools variation 472793 472793 . . . alleles " A G"; frequencies " 0.663157894736842 0.336842105263158"; depth 95 ; unknown ; synonymous GL193001.1 samtools variation 473555 473555 . . . alleles " A G"; frequencies " 0.432432432432432 0.567567567567568"; depth 74 ; unknown ; synonymous GL193001.1 samtools variation 473600 473600 . . . alleles " C T"; frequencies " 0.5875 0.4125"; depth 80 ; unknown ; synonymous GL193001.1 samtools variation 481241 481241 . . . alleles " A G"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; unknown ; synonymous GL193001.1 samtools variation 499700 499700 . . . alleles " T C"; frequencies " 0.540540540540541 0.459459459459459"; depth 37 ; unknown ; synonymous GL193001.1 samtools variation 500898 500898 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193001.1 samtools variation 501755 501755 . . . alleles " C T"; frequencies " 0.684931506849315 0.315068493150685"; depth 73 ; unknown ; N/A GL193001.1 samtools variation 502263 502263 . . . alleles " C T"; frequencies " 0.741573033707865 0.258426966292135"; depth 89 ; unknown ; N/A GL193001.1 samtools variation 502266 502266 . . . alleles " A G"; frequencies " 0.7125 0.2875"; depth 80 ; unknown ; N/A GL193001.1 samtools variation 502435 502435 . . . alleles " A G"; frequencies " 0.681159420289855 0.318840579710145"; depth 69 ; unknown ; N/A GL193001.1 samtools variation 502975 502975 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL193001.1 samtools variation 503110 503110 . . . alleles " C T"; frequencies " 0.651162790697674 0.348837209302326"; depth 43 ; unknown ; N/A GL193001.1 samtools variation 509279 509279 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; synonymous GL193001.1 samtools variation 510866 510866 . . . alleles " C G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193001.1 samtools variation 512064 512064 . . . alleles " A T"; frequencies " 0.8 0.2"; depth 50 ; unknown ; N/A GL193001.1 samtools variation 512183 512183 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL193001.1 samtools variation 512628 512628 . . . alleles " T C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL193001.1 samtools variation 520566 520566 . . . alleles " A G"; frequencies " 0.354679802955665 0.645320197044335"; depth 203 ; known ; synonymous GL193001.1 samtools variation 521825 521825 . . . alleles " C T"; frequencies " 0.322314049586777 0.677685950413223"; depth 121 ; unknown ; synonymous GL193001.1 samtools variation 529081 529081 . . . alleles " C T"; frequencies " 0.435483870967742 0.564516129032258"; depth 124 ; known ; synonymous GL193001.1 samtools variation 530884 530884 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL193001.1 samtools variation 536208 536208 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; synonymous GL193001.1 samtools variation 551361 551361 . . . alleles " G A"; frequencies " 0.72972972972973 0.27027027027027"; depth 74 ; unknown ; N/A GL193001.1 samtools variation 553788 553788 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 34 ; known ; N/A GL193001.1 samtools variation 633394 633394 . . . alleles " C A"; frequencies " 0.732142857142857 0.267857142857143"; depth 56 ; unknown ; N/A GL193001.1 samtools variation 663477 663477 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL193001.1 samtools variation 695632 695632 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193001.1 samtools variation 696938 696938 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; known ; N/A GL193001.1 samtools variation 701293 701293 . . . alleles " T C"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; synonymous GL193001.1 samtools variation 701920 701920 . . . alleles " G A"; frequencies " 0.486486486486487 0.513513513513513"; depth 37 ; known ; non-synonymous GL193001.1 samtools variation 703674 703674 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 64 ; known ; synonymous GL193001.1 samtools variation 703997 703997 . . . alleles " T A"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL193001.1 samtools variation 704487 704487 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193001.1 samtools variation 704507 704507 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193001.1 samtools variation 704796 704796 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL193001.1 samtools variation 820628 820628 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193001.1 samtools variation 848934 848934 . . . alleles " C G"; frequencies " 0.638297872340426 0.361702127659574"; depth 47 ; unknown ; N/A GL193001.1 samtools variation 849830 849830 . . . alleles " G A"; frequencies " 0.504132231404959 0.495867768595041"; depth 121 ; unknown ; N/A GL193001.1 samtools variation 894203 894203 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 36 ; unknown ; non-synonymous GL193001.1 samtools variation 896214 896214 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; non-synonymous GL193001.1 samtools variation 897328 897328 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; synonymous GL193001.1 samtools variation 1073021 1073021 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193002.1 samtools variation 164151 164151 . . . alleles " C G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL193002.1 samtools variation 164544 164544 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL193002.1 samtools variation 189230 189230 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; known ; N/A GL193002.1 samtools variation 189513 189513 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193002.1 samtools variation 190008 190008 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193002.1 samtools variation 190103 190103 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193002.1 samtools variation 220324 220324 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193002.1 samtools variation 228119 228119 . . . alleles " G A"; frequencies " 0.418181818181818 0.581818181818182"; depth 55 ; known ; non-synonymous GL193002.1 samtools variation 231223 231223 . . . alleles " A C"; frequencies " 0.338129496402878 0.661870503597122"; depth 139 ; known ; N/A GL193002.1 samtools variation 231548 231548 . . . alleles " G A"; frequencies " 0.494252873563218 0.505747126436782"; depth 87 ; known ; N/A GL193002.1 samtools variation 234574 234574 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193002.1 samtools variation 237776 237776 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL193002.1 samtools variation 237786 237786 . . . alleles " T G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193002.1 samtools variation 240052 240052 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193002.1 samtools variation 243750 243750 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL193002.1 samtools variation 258820 258820 . . . alleles " G A"; frequencies " 0.768115942028985 0.231884057971014"; depth 69 ; unknown ; synonymous GL193002.1 samtools variation 341027 341027 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 57 ; unknown ; synonymous GL193002.1 samtools variation 342855 342855 . . . alleles " T C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL193002.1 samtools variation 343507 343507 . . . alleles " T C"; frequencies " 0.377358490566038 0.622641509433962"; depth 53 ; unknown ; N/A GL193002.1 samtools variation 369166 369166 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193002.1 samtools variation 369182 369182 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193002.1 samtools variation 372245 372245 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 40 ; unknown ; N/A GL193002.1 samtools variation 373330 373330 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193002.1 samtools variation 374265 374265 . . . alleles " G C"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; unknown ; N/A GL193002.1 samtools variation 453348 453348 . . . alleles " A T"; frequencies " 0.651162790697674 0.348837209302326"; depth 258 ; unknown ; N/A GL193002.1 samtools variation 455814 455814 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193002.1 samtools variation 456149 456149 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 34 ; unknown ; N/A GL193002.1 samtools variation 458975 458975 . . . alleles " C A"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; N/A GL193002.1 samtools variation 465874 465874 . . . alleles " T C"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL193002.1 samtools variation 486707 486707 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193002.1 samtools variation 535988 535988 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 84 ; unknown ; N/A GL193002.1 samtools variation 537014 537014 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193002.1 samtools variation 545703 545703 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193002.1 samtools variation 555455 555455 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193002.1 samtools variation 584535 584535 . . . alleles " A G"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; known ; N/A GL193002.1 samtools variation 591415 591415 . . . alleles " C T"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; known ; N/A GL193002.1 samtools variation 602204 602204 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL193002.1 samtools variation 633699 633699 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL193002.1 samtools variation 636183 636183 . . . alleles " C G"; frequencies " 0.783132530120482 0.216867469879518"; depth 166 ; unknown ; N/A GL193002.1 samtools variation 638943 638943 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193002.1 samtools variation 643057 643057 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193002.1 samtools variation 643923 643923 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193002.1 samtools variation 646716 646716 . . . alleles " C T"; frequencies " 0.666666666666667 0.266666666666667"; depth 15 ; unknown ; N/A GL193002.1 samtools variation 650479 650479 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 126 ; unknown ; N/A GL193002.1 samtools variation 653522 653522 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; non-synonymous GL193002.1 samtools variation 954935 954935 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; synonymous GL193002.1 samtools variation 963150 963150 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193002.1 samtools variation 964086 964086 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193002.1 samtools variation 989291 989291 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL193002.1 samtools variation 995396 995396 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 39 ; unknown ; N/A GL193002.1 samtools variation 995874 995874 . . . alleles " A G"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL193002.1 samtools variation 998409 998409 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193002.1 samtools variation 1003042 1003042 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193002.1 samtools variation 1003062 1003062 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193002.1 samtools variation 1004417 1004417 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193002.1 samtools variation 1007296 1007296 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL193002.1 samtools variation 1008255 1008255 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL193002.1 samtools variation 1008734 1008734 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193002.1 samtools variation 1014077 1014077 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193002.1 samtools variation 1014453 1014453 . . . alleles " A G"; frequencies " 0.568181818181818 0.431818181818182"; depth 44 ; unknown ; N/A GL193002.1 samtools variation 1014675 1014675 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193002.1 samtools variation 1015715 1015715 . . . alleles " A G"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; N/A GL193002.1 samtools variation 1015856 1015856 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL193002.1 samtools variation 1016113 1016113 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL193002.1 samtools variation 1016120 1016120 . . . alleles " G T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193002.1 samtools variation 1016326 1016326 . . . alleles " T C"; frequencies " 0.515384615384615 0.484615384615385"; depth 130 ; unknown ; non-synonymous GL193002.1 samtools variation 1018300 1018300 . . . alleles " A G"; frequencies " 0.34375 0.640625"; depth 64 ; unknown ; synonymous GL193002.1 samtools variation 1018973 1018973 . . . alleles " C T"; frequencies " 0.436893203883495 0.563106796116505"; depth 103 ; unknown ; non-synonymous GL193002.1 samtools variation 1028654 1028654 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL193002.1 samtools variation 1036158 1036158 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL193002.1 samtools variation 1036655 1036655 . . . alleles " G A"; frequencies " 0.683734939759036 0.316265060240964"; depth 332 ; unknown ; synonymous GL193002.1 samtools variation 1040800 1040800 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193002.1 samtools variation 1043343 1043343 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193003.1 samtools variation 52572 52572 . . . alleles " T A"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; synonymous GL193003.1 samtools variation 119963 119963 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 81 ; known ; N/A GL193003.1 samtools variation 120024 120024 . . . alleles " C A"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; known ; N/A GL193003.1 samtools variation 165647 165647 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 58 ; unknown ; synonymous GL193003.1 samtools variation 349832 349832 . . . alleles " T G"; frequencies " 0.651006711409396 0.348993288590604"; depth 149 ; known ; non-synonymous GL193003.1 samtools variation 644496 644496 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193003.1 samtools variation 644567 644567 . . . alleles " A G"; frequencies " 0.607142857142857 0.392857142857143"; depth 84 ; unknown ; synonymous GL193003.1 samtools variation 654522 654522 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; unknown ; synonymous GL193003.1 samtools variation 654617 654617 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 39 ; unknown ; non-synonymous GL193003.1 samtools variation 756386 756386 . . . alleles " G A"; frequencies " 0.465116279069767 0.534883720930233"; depth 43 ; unknown ; non-synonymous GL193003.1 samtools variation 814075 814075 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; synonymous GL193003.1 samtools variation 837328 837328 . . . alleles " T A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193003.1 samtools variation 929493 929493 . . . alleles " G C"; frequencies " 0.787234042553192 0.212765957446809"; depth 47 ; unknown ; synonymous GL193003.1 samtools variation 1079666 1079666 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193004.1 samtools variation 68121 68121 . . . alleles " A T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193004.1 samtools variation 69740 69740 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193004.1 samtools variation 73056 73056 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193004.1 samtools variation 76887 76887 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193004.1 samtools variation 134387 134387 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193005.1 samtools variation 20277 20277 . . . alleles " A G"; frequencies " 0.76 0.24"; depth 100 ; unknown ; N/A GL193005.1 samtools variation 22042 22042 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL193005.1 samtools variation 96131 96131 . . . alleles " G T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193005.1 samtools variation 102623 102623 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193005.1 samtools variation 213596 213596 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL193005.1 samtools variation 291686 291686 . . . alleles " G A"; frequencies " 0.383333333333333 0.611111111111111"; depth 180 ; known ; synonymous GL193005.1 samtools variation 341480 341480 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193005.1 samtools variation 343849 343849 . . . alleles " A G"; frequencies " 0.759259259259259 0.240740740740741"; depth 54 ; known ; N/A GL193005.1 samtools variation 371883 371883 . . . alleles " A T"; frequencies " 0.648648648648649 0.351351351351351"; depth 74 ; known ; non-synonymous GL193005.1 samtools variation 373776 373776 . . . alleles " C T"; frequencies " 0.447761194029851 0.552238805970149"; depth 134 ; known ; N/A GL193005.1 samtools variation 374260 374260 . . . alleles " C T"; frequencies " 0.775 0.225"; depth 80 ; known ; N/A GL193005.1 samtools variation 374588 374588 . . . alleles " T C"; frequencies " 0.796296296296296 0.203703703703704"; depth 54 ; known ; N/A GL193005.1 samtools variation 375936 375936 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193005.1 samtools variation 377056 377056 . . . alleles " A C"; frequencies " 0.607142857142857 0.392857142857143"; depth 56 ; known ; N/A GL193005.1 samtools variation 772283 772283 . . . alleles " G C"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL193005.1 samtools variation 778737 778737 . . . alleles " T C"; frequencies " 0.21978021978022 0.78021978021978"; depth 91 ; unknown ; N/A GL193005.1 samtools variation 779945 779945 . . . alleles " C T"; frequencies " 0.370833333333333 0.629166666666667"; depth 240 ; unknown ; N/A GL193005.1 samtools variation 780790 780790 . . . alleles " C T"; frequencies " 0.336842105263158 0.663157894736842"; depth 190 ; unknown ; N/A GL193005.1 samtools variation 806148 806148 . . . alleles " C T"; frequencies " 0.651515151515151 0.348484848484849"; depth 66 ; unknown ; synonymous GL193005.1 samtools variation 807394 807394 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 126 ; unknown ; synonymous GL193005.1 samtools variation 882910 882910 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 110 ; unknown ; synonymous GL193005.1 samtools variation 884192 884192 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193005.1 samtools variation 890208 890208 . . . alleles " C A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193005.1 samtools variation 891123 891123 . . . alleles " G A"; frequencies " 0.229166666666667 0.770833333333333"; depth 48 ; unknown ; synonymous GL193005.1 samtools variation 894444 894444 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL193005.1 samtools variation 894542 894542 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193005.1 samtools variation 894695 894695 . . . alleles " C T"; frequencies " 0.203525641025641 0.796474358974359"; depth 624 ; unknown ; N/A GL193005.1 samtools variation 895333 895333 . . . alleles " C A"; frequencies " 0.660714285714286 0.339285714285714"; depth 112 ; unknown ; N/A GL193005.1 samtools variation 895876 895876 . . . alleles " A G"; frequencies " 0.219354838709677 0.780645161290323"; depth 155 ; unknown ; N/A GL193005.1 samtools variation 896803 896803 . . . alleles " A G"; frequencies " 0.206572769953052 0.793427230046948"; depth 213 ; unknown ; synonymous GL193005.1 samtools variation 897140 897140 . . . alleles " C T"; frequencies " 0.534090909090909 0.465909090909091"; depth 88 ; unknown ; synonymous GL193005.1 samtools variation 899822 899822 . . . alleles " C T"; frequencies " 0.293103448275862 0.706896551724138"; depth 58 ; unknown ; N/A GL193005.1 samtools variation 903518 903518 . . . alleles " T C"; frequencies " 0.253164556962025 0.746835443037975"; depth 158 ; unknown ; synonymous GL193005.1 samtools variation 904183 904183 . . . alleles " A G"; frequencies " 0.553875236294896 0.446124763705104"; depth 529 ; unknown ; synonymous GL193005.1 samtools variation 905163 905163 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193005.1 samtools variation 905289 905289 . . . alleles " C T"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; N/A GL193005.1 samtools variation 964821 964821 . . . alleles " T C"; frequencies " 0.678321678321678 0.321678321678322"; depth 143 ; unknown ; synonymous GL193006.1 samtools variation 280462 280462 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193006.1 samtools variation 291644 291644 . . . alleles " C T"; frequencies " 0.479166666666667 0.520833333333333"; depth 96 ; known ; synonymous GL193006.1 samtools variation 297651 297651 . . . alleles " A G"; frequencies " 0.32 0.68"; depth 25 ; known ; N/A GL193006.1 samtools variation 298022 298022 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193007.1 samtools variation 63694 63694 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; synonymous GL193007.1 samtools variation 69480 69480 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; synonymous GL193007.1 samtools variation 106852 106852 . . . alleles " A G"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; synonymous GL193007.1 samtools variation 106990 106990 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; synonymous GL193007.1 samtools variation 107185 107185 . . . alleles " C T"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; synonymous GL193007.1 samtools variation 107440 107440 . . . alleles " A G"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; unknown ; synonymous GL193007.1 samtools variation 107935 107935 . . . alleles " C G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; synonymous GL193007.1 samtools variation 117578 117578 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 100 ; unknown ; N/A GL193007.1 samtools variation 147904 147904 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193007.1 samtools variation 147958 147958 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 36 ; known ; N/A GL193007.1 samtools variation 169656 169656 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 44 ; known ; N/A GL193009.1 samtools variation 41221 41221 . . . alleles " T C"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL193010.1 samtools variation 10096 10096 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL193010.1 samtools variation 12204 12204 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193010.1 samtools variation 12759 12759 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193010.1 samtools variation 18607 18607 . . . alleles " A G"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL193010.1 samtools variation 20459 20459 . . . alleles " C G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL193010.1 samtools variation 23998 23998 . . . alleles " G A"; frequencies " 0.563291139240506 0.436708860759494"; depth 158 ; unknown ; N/A GL193010.1 samtools variation 24240 24240 . . . alleles " C T"; frequencies " 0.556034482758621 0.443965517241379"; depth 232 ; unknown ; N/A GL193010.1 samtools variation 33410 33410 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193010.1 samtools variation 38763 38763 . . . alleles " C A"; frequencies " 0.725806451612903 0.274193548387097"; depth 62 ; unknown ; non-synonymous GL193010.1 samtools variation 72207 72207 . . . alleles " C A"; frequencies " 0.493589743589744 0.506410256410256"; depth 156 ; unknown ; N/A GL193010.1 samtools variation 164163 164163 . . . alleles " C T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL193010.1 samtools variation 215806 215806 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193010.1 samtools variation 215881 215881 . . . alleles " A T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193010.1 samtools variation 224088 224088 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193010.1 samtools variation 246462 246462 . . . alleles " C A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL193010.1 samtools variation 352333 352333 . . . alleles " G A"; frequencies " 0.711538461538462 0.288461538461538"; depth 52 ; known ; synonymous GL193010.1 samtools variation 360128 360128 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; synonymous GL193010.1 samtools variation 645259 645259 . . . alleles " G A"; frequencies " 0.206349206349206 0.793650793650794"; depth 126 ; known ; N/A GL193010.1 samtools variation 821623 821623 . . . alleles " G T"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193010.1 samtools variation 821835 821835 . . . alleles " T C"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; known ; N/A GL193010.1 samtools variation 823004 823004 . . . alleles " G A"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; known ; N/A GL193010.1 samtools variation 823028 823028 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; known ; N/A GL193010.1 samtools variation 823465 823465 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193010.1 samtools variation 823503 823503 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193010.1 samtools variation 832108 832108 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193010.1 samtools variation 845816 845816 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 60 ; known ; synonymous GL193010.1 samtools variation 861828 861828 . . . alleles " G C"; frequencies " 0.744565217391304 0.255434782608696"; depth 184 ; known ; non-synonymous GL193010.1 samtools variation 866545 866545 . . . alleles " C T"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; known ; synonymous GL193010.1 samtools variation 872188 872188 . . . alleles " T A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL193010.1 samtools variation 873664 873664 . . . alleles " T C"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; known ; N/A GL193010.1 samtools variation 873733 873733 . . . alleles " A G"; frequencies " 0.577777777777778 0.422222222222222"; depth 45 ; known ; N/A GL193010.1 samtools variation 873847 873847 . . . alleles " G T"; frequencies " 0.410714285714286 0.589285714285714"; depth 56 ; known ; N/A GL193010.1 samtools variation 874430 874430 . . . alleles " T C"; frequencies " 0.441176470588235 0.558823529411765"; depth 68 ; known ; N/A GL193010.1 samtools variation 874524 874524 . . . alleles " G C"; frequencies " 0.260869565217391 0.739130434782609"; depth 46 ; known ; N/A GL193010.1 samtools variation 878494 878494 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; known ; N/A GL193010.1 samtools variation 878671 878671 . . . alleles " C T"; frequencies " 0.46875 0.53125"; depth 64 ; known ; N/A GL193010.1 samtools variation 879341 879341 . . . alleles " G A"; frequencies " 0.403508771929825 0.596491228070175"; depth 57 ; known ; synonymous GL193010.1 samtools variation 880715 880715 . . . alleles " T G"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; unknown ; N/A GL193010.1 samtools variation 890050 890050 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL193010.1 samtools variation 895264 895264 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193010.1 samtools variation 939209 939209 . . . alleles " T C"; frequencies " 0.408450704225352 0.591549295774648"; depth 142 ; known ; N/A GL193010.1 samtools variation 939618 939618 . . . alleles " G A"; frequencies " 0.57 0.43"; depth 100 ; unknown ; N/A GL193010.1 samtools variation 940376 940376 . . . alleles " G T"; frequencies " 0.568627450980392 0.431372549019608"; depth 51 ; known ; N/A GL193010.1 samtools variation 981781 981781 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193010.1 samtools variation 985084 985084 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193010.1 samtools variation 1041885 1041885 . . . alleles " A G"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; known ; N/A GL193010.1 samtools variation 1041900 1041900 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; known ; N/A GL193010.1 samtools variation 1041996 1041996 . . . alleles " G A"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL193010.1 samtools variation 1048092 1048092 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL193010.1 samtools variation 1048093 1048093 . . . alleles " A T"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL193010.1 samtools variation 1048136 1048136 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; N/A GL193010.1 samtools variation 1048180 1048180 . . . alleles " C A"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; known ; N/A GL193010.1 samtools variation 1049882 1049882 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193010.1 samtools variation 1049946 1049946 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193010.1 samtools variation 1050494 1050494 . . . alleles " A G"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL193010.1 samtools variation 1056907 1056907 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193010.1 samtools variation 1056991 1056991 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL193010.1 samtools variation 1057096 1057096 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193010.1 samtools variation 1061089 1061089 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193010.1 samtools variation 1065737 1065737 . . . alleles " G T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL193010.1 samtools variation 1066837 1066837 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL193010.1 samtools variation 1066865 1066865 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193010.1 samtools variation 1067195 1067195 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193010.1 samtools variation 1067297 1067297 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193010.1 samtools variation 1067342 1067342 . . . alleles " C G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193010.1 samtools variation 1068359 1068359 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; known ; non-synonymous GL193012.1 samtools variation 140974 140974 . . . alleles " G T"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; known ; N/A GL193012.1 samtools variation 277607 277607 . . . alleles " G A"; frequencies " 0.728205128205128 0.271794871794872"; depth 195 ; unknown ; synonymous GL193012.1 samtools variation 370495 370495 . . . alleles " T C"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; unknown ; N/A GL193012.1 samtools variation 757730 757730 . . . alleles " C T"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; synonymous GL193012.1 samtools variation 791933 791933 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; unknown ; synonymous GL193012.1 samtools variation 806162 806162 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL193012.1 samtools variation 809071 809071 . . . alleles " C T"; frequencies " 0.76 0.24"; depth 50 ; unknown ; N/A GL193012.1 samtools variation 809265 809265 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 42 ; known ; N/A GL193012.1 samtools variation 809316 809316 . . . alleles " G T"; frequencies " 0.2 0.8"; depth 45 ; known ; N/A GL193012.1 samtools variation 812346 812346 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; known ; N/A GL193012.1 samtools variation 813138 813138 . . . alleles " G A"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; known ; N/A GL193012.1 samtools variation 814882 814882 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; known ; N/A GL193012.1 samtools variation 815240 815240 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; known ; N/A GL193012.1 samtools variation 875501 875501 . . . alleles " A G"; frequencies " 0.774774774774775 0.225225225225225"; depth 111 ; unknown ; N/A GL193012.1 samtools variation 875596 875596 . . . alleles " G A"; frequencies " 0.758241758241758 0.241758241758242"; depth 91 ; unknown ; N/A GL193012.1 samtools variation 877712 877712 . . . alleles " C A"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; known ; N/A GL193012.1 samtools variation 878904 878904 . . . alleles " T C"; frequencies " 0.798561151079137 0.201438848920863"; depth 139 ; unknown ; N/A GL193012.1 samtools variation 879427 879427 . . . alleles " A C"; frequencies " 0.288135593220339 0.711864406779661"; depth 59 ; known ; N/A GL193012.1 samtools variation 881154 881154 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193012.1 samtools variation 881399 881399 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193012.1 samtools variation 884716 884716 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193012.1 samtools variation 885585 885585 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL193012.1 samtools variation 929366 929366 . . . alleles " A G"; frequencies " 0.677966101694915 0.322033898305085"; depth 177 ; known ; N/A GL193014.1 samtools variation 544688 544688 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193014.1 samtools variation 548556 548556 . . . alleles " G A"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; unknown ; N/A GL193014.1 samtools variation 550937 550937 . . . alleles " T G"; frequencies " 0.464516129032258 0.535483870967742"; depth 155 ; unknown ; N/A GL193014.1 samtools variation 551301 551301 . . . alleles " C T"; frequencies " 0.510416666666667 0.489583333333333"; depth 96 ; unknown ; N/A GL193014.1 samtools variation 552044 552044 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL193014.1 samtools variation 552063 552063 . . . alleles " T G"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL193014.1 samtools variation 552619 552619 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193014.1 samtools variation 554067 554067 . . . alleles " C T"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL193014.1 samtools variation 554135 554135 . . . alleles " G T"; frequencies " 0.650793650793651 0.349206349206349"; depth 63 ; unknown ; N/A GL193014.1 samtools variation 554169 554169 . . . alleles " G C"; frequencies " 0.531914893617021 0.468085106382979"; depth 94 ; unknown ; N/A GL193014.1 samtools variation 554925 554925 . . . alleles " G T"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; N/A GL193014.1 samtools variation 555059 555059 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; unknown ; N/A GL193014.1 samtools variation 555267 555267 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193014.1 samtools variation 555377 555377 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL193014.1 samtools variation 557027 557027 . . . alleles " C T"; frequencies " 0.500583430571762 0.499416569428238"; depth 857 ; unknown ; N/A GL193014.1 samtools variation 557506 557506 . . . alleles " G A"; frequencies " 0.528880866425993 0.471119133574007"; depth 1108 ; unknown ; N/A GL193014.1 samtools variation 585716 585716 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL193014.1 samtools variation 648972 648972 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 70 ; known ; N/A GL193014.1 samtools variation 672616 672616 . . . alleles " T C"; frequencies " 0.382716049382716 0.617283950617284"; depth 81 ; known ; N/A GL193014.1 samtools variation 672639 672639 . . . alleles " A G"; frequencies " 0.589285714285714 0.410714285714286"; depth 112 ; unknown ; N/A GL193014.1 samtools variation 674455 674455 . . . alleles " A G"; frequencies " 0.634408602150538 0.365591397849462"; depth 93 ; known ; N/A GL193014.1 samtools variation 676546 676546 . . . alleles " G A"; frequencies " 0.236842105263158 0.763157894736842"; depth 38 ; known ; N/A GL193014.1 samtools variation 678031 678031 . . . alleles " A G"; frequencies " 0.251908396946565 0.748091603053435"; depth 131 ; known ; N/A GL193014.1 samtools variation 682928 682928 . . . alleles " T C"; frequencies " 0.386138613861386 0.613861386138614"; depth 101 ; known ; N/A GL193014.1 samtools variation 683464 683464 . . . alleles " G A"; frequencies " 0.765822784810127 0.234177215189873"; depth 158 ; known ; N/A GL193014.1 samtools variation 699260 699260 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; known ; N/A GL193014.1 samtools variation 699522 699522 . . . alleles " G A"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL193014.1 samtools variation 755962 755962 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; non-synonymous GL193014.1 samtools variation 767674 767674 . . . alleles " G T"; frequencies " 0.605947955390335 0.386617100371747"; depth 269 ; known ; non-synonymous GL193014.1 samtools variation 768532 768532 . . . alleles " A G"; frequencies " 0.442708333333333 0.557291666666667"; depth 192 ; known ; non-synonymous GL193014.1 samtools variation 768964 768964 . . . alleles " T C"; frequencies " 0.362229102167183 0.637770897832817"; depth 323 ; known ; synonymous GL193014.1 samtools variation 770075 770075 . . . alleles " G A"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; known ; N/A GL193014.1 samtools variation 770090 770090 . . . alleles " C T"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL193014.1 samtools variation 771138 771138 . . . alleles " C G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; synonymous GL193014.1 samtools variation 777399 777399 . . . alleles " A G"; frequencies " 0.629370629370629 0.370629370629371"; depth 143 ; known ; synonymous GL193014.1 samtools variation 778204 778204 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193014.1 samtools variation 869587 869587 . . . alleles " A G"; frequencies " 0.779220779220779 0.220779220779221"; depth 154 ; known ; N/A GL193014.1 samtools variation 870119 870119 . . . alleles " T A"; frequencies " 0.754098360655738 0.245901639344262"; depth 122 ; known ; N/A GL193014.1 samtools variation 871800 871800 . . . alleles " G C"; frequencies " 0.702412868632708 0.297587131367292"; depth 373 ; known ; N/A GL193014.1 samtools variation 878693 878693 . . . alleles " G T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193014.1 samtools variation 878694 878694 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193014.1 samtools variation 900447 900447 . . . alleles " C T"; frequencies " 0.411009174311927 0.587155963302752"; depth 545 ; known ; N/A GL193014.1 samtools variation 952433 952433 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 40 ; known ; synonymous GL193014.1 samtools variation 954189 954189 . . . alleles " C T"; frequencies " 0.510204081632653 0.489795918367347"; depth 98 ; known ; N/A GL193014.1 samtools variation 956500 956500 . . . alleles " G T"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; known ; N/A GL193014.1 samtools variation 956622 956622 . . . alleles " T C"; frequencies " 0.380952380952381 0.619047619047619"; depth 42 ; known ; N/A GL193014.1 samtools variation 959454 959454 . . . alleles " T C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193014.1 samtools variation 959680 959680 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; known ; N/A GL193014.1 samtools variation 1046278 1046278 . . . alleles " T C"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; known ; N/A GL193014.1 samtools variation 1071695 1071695 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193014.1 samtools variation 1071702 1071702 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193015.1 samtools variation 523002 523002 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 42 ; known ; non-synonymous GL193015.1 samtools variation 534525 534525 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 52 ; unknown ; non-synonymous GL193015.1 samtools variation 535871 535871 . . . alleles " T A"; frequencies " 0.74468085106383 0.25531914893617"; depth 188 ; unknown ; N/A GL193015.1 samtools variation 538903 538903 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 52 ; known ; N/A GL193015.1 samtools variation 540160 540160 . . . alleles " T C"; frequencies " 0.710365853658537 0.289634146341463"; depth 328 ; unknown ; N/A GL193016.1 samtools variation 12933 12933 . . . alleles " C T"; frequencies " 0.728155339805825 0.271844660194175"; depth 103 ; unknown ; synonymous GL193016.1 samtools variation 22461 22461 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193016.1 samtools variation 25652 25652 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193016.1 samtools variation 25832 25832 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 60 ; unknown ; N/A GL193016.1 samtools variation 25985 25985 . . . alleles " C T"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL193016.1 samtools variation 26272 26272 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193016.1 samtools variation 28827 28827 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193016.1 samtools variation 28832 28832 . . . alleles " C A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193016.1 samtools variation 28913 28913 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193016.1 samtools variation 36705 36705 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193016.1 samtools variation 39415 39415 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193016.1 samtools variation 55527 55527 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193016.1 samtools variation 72333 72333 . . . alleles " C G"; frequencies " 0.525139664804469 0.474860335195531"; depth 179 ; unknown ; synonymous GL193016.1 samtools variation 72365 72365 . . . alleles " C T"; frequencies " 0.597315436241611 0.402684563758389"; depth 149 ; known ; non-synonymous GL193016.1 samtools variation 72995 72995 . . . alleles " T A"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL193016.1 samtools variation 73769 73769 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193016.1 samtools variation 74725 74725 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL193016.1 samtools variation 75711 75711 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL193016.1 samtools variation 76550 76550 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL193016.1 samtools variation 76736 76736 . . . alleles " T A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193016.1 samtools variation 83131 83131 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193016.1 samtools variation 83192 83192 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL193016.1 samtools variation 83223 83223 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL193016.1 samtools variation 84508 84508 . . . alleles " A C"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; N/A GL193016.1 samtools variation 84911 84911 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL193016.1 samtools variation 85195 85195 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL193016.1 samtools variation 85268 85268 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL193016.1 samtools variation 85407 85407 . . . alleles " G A"; frequencies " 0.543408360128617 0.456591639871383"; depth 311 ; known ; synonymous GL193016.1 samtools variation 85615 85615 . . . alleles " G A"; frequencies " 0.412698412698413 0.587301587301587"; depth 63 ; known ; N/A GL193016.1 samtools variation 85661 85661 . . . alleles " C T"; frequencies " 0.592592592592593 0.407407407407407"; depth 54 ; known ; N/A GL193016.1 samtools variation 86141 86141 . . . alleles " T C"; frequencies " 0.346938775510204 0.653061224489796"; depth 49 ; known ; N/A GL193016.1 samtools variation 86259 86259 . . . alleles " G A"; frequencies " 0.647887323943662 0.352112676056338"; depth 71 ; known ; N/A GL193016.1 samtools variation 86834 86834 . . . alleles " T A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL193016.1 samtools variation 86998 86998 . . . alleles " A C"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL193016.1 samtools variation 87060 87060 . . . alleles " G A"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; unknown ; N/A GL193016.1 samtools variation 87593 87593 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 39 ; known ; N/A GL193016.1 samtools variation 87713 87713 . . . alleles " T C"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; known ; N/A GL193016.1 samtools variation 87792 87792 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; known ; N/A GL193016.1 samtools variation 87854 87854 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL193016.1 samtools variation 90465 90465 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193016.1 samtools variation 94542 94542 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193016.1 samtools variation 175495 175495 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL193016.1 samtools variation 176940 176940 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193016.1 samtools variation 177050 177050 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL193016.1 samtools variation 181294 181294 . . . alleles " C T"; frequencies " 0.783783783783784 0.216216216216216"; depth 74 ; known ; non-synonymous GL193016.1 samtools variation 204525 204525 . . . alleles " T C"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; non-synonymous GL193016.1 samtools variation 215786 215786 . . . alleles " T C"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; non-synonymous GL193016.1 samtools variation 247734 247734 . . . alleles " G A"; frequencies " 0.637362637362637 0.362637362637363"; depth 91 ; unknown ; N/A GL193017.1 samtools variation 815635 815635 . . . alleles " A G"; frequencies " 0.775862068965517 0.224137931034483"; depth 58 ; known ; synonymous GL193017.1 samtools variation 872417 872417 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL193017.1 samtools variation 879009 879009 . . . alleles " A G"; frequencies " 0.30188679245283 0.69811320754717"; depth 53 ; known ; synonymous GL193019.1 samtools variation 75490 75490 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 52 ; unknown ; N/A GL193019.1 samtools variation 513832 513832 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 54 ; unknown ; N/A GL193019.1 samtools variation 652323 652323 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193019.1 samtools variation 792226 792226 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193019.1 samtools variation 798674 798674 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193019.1 samtools variation 822579 822579 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 195 ; unknown ; non-synonymous GL193019.1 samtools variation 824128 824128 . . . alleles " T A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL193019.1 samtools variation 834044 834044 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193019.1 samtools variation 840942 840942 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193019.1 samtools variation 841288 841288 . . . alleles " G C"; frequencies " 0.270833333333333 0.729166666666667"; depth 48 ; unknown ; N/A GL193019.1 samtools variation 843227 843227 . . . alleles " T A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193019.1 samtools variation 856622 856622 . . . alleles " G A"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; unknown ; N/A GL193019.1 samtools variation 874808 874808 . . . alleles " C G"; frequencies " 0.248 0.752"; depth 125 ; unknown ; N/A GL193019.1 samtools variation 880532 880532 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 30 ; unknown ; N/A GL193019.1 samtools variation 893607 893607 . . . alleles " G A"; frequencies " 0.564102564102564 0.435897435897436"; depth 78 ; unknown ; N/A GL193019.1 samtools variation 926564 926564 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193019.1 samtools variation 933383 933383 . . . alleles " C T"; frequencies " 0.353115727002967 0.646884272997033"; depth 337 ; known ; synonymous GL193019.1 samtools variation 941665 941665 . . . alleles " T G"; frequencies " 0.335820895522388 0.664179104477612"; depth 134 ; known ; N/A GL193019.1 samtools variation 962636 962636 . . . alleles " C T"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; known ; N/A GL193019.1 samtools variation 977562 977562 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193019.1 samtools variation 987247 987247 . . . alleles " G T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL193019.1 samtools variation 987936 987936 . . . alleles " G A"; frequencies " 0.613577023498694 0.386422976501305"; depth 383 ; unknown ; N/A GL193019.1 samtools variation 988706 988706 . . . alleles " G A"; frequencies " 0.765595463137996 0.234404536862004"; depth 529 ; unknown ; N/A GL193022.1 samtools variation 121922 121922 . . . alleles " T A"; frequencies " 0.594202898550725 0.405797101449275"; depth 138 ; unknown ; synonymous GL193022.1 samtools variation 129291 129291 . . . alleles " T C"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193022.1 samtools variation 192850 192850 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL193022.1 samtools variation 193524 193524 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193022.1 samtools variation 193825 193825 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 54 ; unknown ; N/A GL193022.1 samtools variation 196692 196692 . . . alleles " G A"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL193022.1 samtools variation 197483 197483 . . . alleles " G A"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL193022.1 samtools variation 197715 197715 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 132 ; unknown ; N/A GL193022.1 samtools variation 198522 198522 . . . alleles " T C"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL193022.1 samtools variation 199010 199010 . . . alleles " A G"; frequencies " 0.636054421768708 0.363945578231293"; depth 294 ; unknown ; N/A GL193022.1 samtools variation 199840 199840 . . . alleles " C G"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; unknown ; N/A GL193022.1 samtools variation 200014 200014 . . . alleles " A C"; frequencies " 0.630434782608696 0.369565217391304"; depth 46 ; unknown ; N/A GL193022.1 samtools variation 357252 357252 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 48 ; unknown ; synonymous GL193022.1 samtools variation 376984 376984 . . . alleles " A G"; frequencies " 0.701492537313433 0.298507462686567"; depth 67 ; unknown ; synonymous GL193022.1 samtools variation 574173 574173 . . . alleles " C T"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; unknown ; N/A GL193022.1 samtools variation 574798 574798 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 66 ; unknown ; N/A GL193022.1 samtools variation 575842 575842 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 96 ; unknown ; N/A GL193022.1 samtools variation 575929 575929 . . . alleles " C T"; frequencies " 0.65625 0.34375"; depth 64 ; unknown ; N/A GL193022.1 samtools variation 576486 576486 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 54 ; unknown ; N/A GL193022.1 samtools variation 576700 576700 . . . alleles " A G"; frequencies " 0.306122448979592 0.693877551020408"; depth 49 ; unknown ; N/A GL193022.1 samtools variation 576808 576808 . . . alleles " T C"; frequencies " 0.531914893617021 0.468085106382979"; depth 47 ; unknown ; N/A GL193022.1 samtools variation 577118 577118 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 140 ; unknown ; N/A GL193022.1 samtools variation 736763 736763 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; synonymous GL193022.1 samtools variation 748161 748161 . . . alleles " A G"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; non-synonymous GL193022.1 samtools variation 968384 968384 . . . alleles " G T"; frequencies " 0.58695652173913 0.41304347826087"; depth 46 ; unknown ; N/A GL193024.1 samtools variation 773164 773164 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; synonymous GL193024.1 samtools variation 773317 773317 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 60 ; unknown ; synonymous GL193024.1 samtools variation 885772 885772 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 32 ; unknown ; synonymous GL193024.1 samtools variation 901659 901659 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 32 ; known ; N/A GL193024.1 samtools variation 902479 902479 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193024.1 samtools variation 902597 902597 . . . alleles " G T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL193024.1 samtools variation 998608 998608 . . . alleles " T C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL193024.1 samtools variation 1032485 1032485 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL193025.1 samtools variation 46505 46505 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; synonymous GL193025.1 samtools variation 67081 67081 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; synonymous GL193025.1 samtools variation 336254 336254 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; synonymous GL193025.1 samtools variation 910698 910698 . . . alleles " T C"; frequencies " 0.257575757575758 0.742424242424242"; depth 66 ; known ; N/A GL193025.1 samtools variation 1018457 1018457 . . . alleles " T C"; frequencies " 0.232558139534884 0.767441860465116"; depth 43 ; known ; N/A GL193026.1 samtools variation 17533 17533 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193026.1 samtools variation 21385 21385 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL193026.1 samtools variation 21468 21468 . . . alleles " C T"; frequencies " 0.581395348837209 0.418604651162791"; depth 43 ; unknown ; N/A GL193026.1 samtools variation 21656 21656 . . . alleles " T C"; frequencies " 0.559322033898305 0.440677966101695"; depth 59 ; unknown ; N/A GL193026.1 samtools variation 21727 21727 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 60 ; unknown ; N/A GL193026.1 samtools variation 22052 22052 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193026.1 samtools variation 22067 22067 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193026.1 samtools variation 22576 22576 . . . alleles " A G"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL193026.1 samtools variation 22980 22980 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL193026.1 samtools variation 33600 33600 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 50 ; unknown ; synonymous GL193026.1 samtools variation 702501 702501 . . . alleles " G T"; frequencies " 0.647619047619048 0.352380952380952"; depth 105 ; known ; non-synonymous GL193026.1 samtools variation 705213 705213 . . . alleles " A G"; frequencies " 0.247572815533981 0.752427184466019"; depth 412 ; unknown ; synonymous GL193026.1 samtools variation 708944 708944 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193026.1 samtools variation 709008 709008 . . . alleles " T G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193026.1 samtools variation 709198 709198 . . . alleles " A G"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; unknown ; N/A GL193026.1 samtools variation 710423 710423 . . . alleles " G A"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL193026.1 samtools variation 711825 711825 . . . alleles " A G"; frequencies " 0.303827751196172 0.696172248803828"; depth 418 ; unknown ; N/A GL193026.1 samtools variation 716471 716471 . . . alleles " C T"; frequencies " 0.721212121212121 0.277575757575758"; depth 825 ; unknown ; synonymous GL193026.1 samtools variation 730094 730094 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; non-synonymous GL193026.1 samtools variation 738207 738207 . . . alleles " C T"; frequencies " 0.314814814814815 0.685185185185185"; depth 54 ; unknown ; synonymous GL193026.1 samtools variation 744973 744973 . . . alleles " A G"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; non-synonymous GL193026.1 samtools variation 812462 812462 . . . alleles " T C"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL193026.1 samtools variation 812643 812643 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193026.1 samtools variation 814024 814024 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193026.1 samtools variation 837016 837016 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193026.1 samtools variation 883519 883519 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193026.1 samtools variation 893912 893912 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193026.1 samtools variation 943215 943215 . . . alleles " T A"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; known ; N/A GL193026.1 samtools variation 944147 944147 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL193026.1 samtools variation 944368 944368 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193026.1 samtools variation 944555 944555 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193026.1 samtools variation 947174 947174 . . . alleles " T G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL193026.1 samtools variation 948488 948488 . . . alleles " A G"; frequencies " 0.76 0.24"; depth 375 ; known ; synonymous GL193026.1 samtools variation 952253 952253 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193026.1 samtools variation 952348 952348 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193026.1 samtools variation 956242 956242 . . . alleles " C A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193026.1 samtools variation 958073 958073 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; known ; N/A GL193026.1 samtools variation 958160 958160 . . . alleles " T A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193026.1 samtools variation 959244 959244 . . . alleles " A G"; frequencies " 0.36 0.64"; depth 25 ; known ; N/A GL193026.1 samtools variation 961464 961464 . . . alleles " G A"; frequencies " 0.426767676767677 0.573232323232323"; depth 396 ; unknown ; N/A GL193026.1 samtools variation 982844 982844 . . . alleles " T C"; frequencies " 0.557142857142857 0.442857142857143"; depth 70 ; known ; synonymous GL193026.1 samtools variation 1022001 1022001 . . . alleles " A G"; frequencies " 0.514705882352941 0.485294117647059"; depth 136 ; known ; N/A GL193026.1 samtools variation 1022017 1022017 . . . alleles " G A"; frequencies " 0.544117647058823 0.455882352941176"; depth 136 ; known ; N/A GL193027.1 samtools variation 115246 115246 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193027.1 samtools variation 116803 116803 . . . alleles " G A"; frequencies " 0.509259259259259 0.490740740740741"; depth 108 ; known ; synonymous GL193027.1 samtools variation 118239 118239 . . . alleles " C G"; frequencies " 0.413223140495868 0.586776859504132"; depth 121 ; known ; N/A GL193027.1 samtools variation 118545 118545 . . . alleles " T A"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; known ; N/A GL193027.1 samtools variation 118601 118601 . . . alleles " T G"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; known ; N/A GL193027.1 samtools variation 124418 124418 . . . alleles " C T"; frequencies " 0.698412698412698 0.301587301587302"; depth 63 ; unknown ; synonymous GL193027.1 samtools variation 157813 157813 . . . alleles " G A"; frequencies " 0.448979591836735 0.551020408163265"; depth 49 ; known ; synonymous GL193027.1 samtools variation 214251 214251 . . . alleles " G A"; frequencies " 0.595744680851064 0.404255319148936"; depth 94 ; known ; synonymous GL193027.1 samtools variation 219162 219162 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 81 ; known ; N/A GL193027.1 samtools variation 840469 840469 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 34 ; unknown ; synonymous GL193027.1 samtools variation 861826 861826 . . . alleles " C T"; frequencies " 0.21875 0.78125"; depth 32 ; unknown ; N/A GL193027.1 samtools variation 915362 915362 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; non-synonymous GL193028.1 samtools variation 241488 241488 . . . alleles " T A"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL193028.1 samtools variation 355028 355028 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193028.1 samtools variation 384775 384775 . . . alleles " C T"; frequencies " 0.327868852459016 0.672131147540984"; depth 61 ; known ; N/A GL193028.1 samtools variation 575332 575332 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193028.1 samtools variation 601668 601668 . . . alleles " T G"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; unknown ; N/A GL193028.1 samtools variation 613324 613324 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193028.1 samtools variation 614255 614255 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL193028.1 samtools variation 614511 614511 . . . alleles " G A"; frequencies " 0.383720930232558 0.616279069767442"; depth 172 ; known ; synonymous GL193028.1 samtools variation 614739 614739 . . . alleles " G A"; frequencies " 0.747787610619469 0.252212389380531"; depth 452 ; unknown ; synonymous GL193028.1 samtools variation 615956 615956 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL193028.1 samtools variation 617024 617024 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193028.1 samtools variation 618314 618314 . . . alleles " C T"; frequencies " 0.706730769230769 0.293269230769231"; depth 208 ; unknown ; N/A GL193028.1 samtools variation 619836 619836 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193028.1 samtools variation 624620 624620 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL193028.1 samtools variation 627016 627016 . . . alleles " T G"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL193028.1 samtools variation 627735 627735 . . . alleles " A G"; frequencies " 0.506849315068493 0.493150684931507"; depth 73 ; known ; N/A GL193028.1 samtools variation 628333 628333 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL193028.1 samtools variation 632715 632715 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193028.1 samtools variation 634482 634482 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193028.1 samtools variation 636826 636826 . . . alleles " T C"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL193028.1 samtools variation 637382 637382 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193028.1 samtools variation 637486 637486 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193028.1 samtools variation 637778 637778 . . . alleles " C T"; frequencies " 0.676470588235294 0.323529411764706"; depth 612 ; unknown ; non-synonymous GL193028.1 samtools variation 638164 638164 . . . alleles " G T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL193028.1 samtools variation 638548 638548 . . . alleles " A G"; frequencies " 0.236301369863014 0.763698630136986"; depth 584 ; known ; synonymous GL193028.1 samtools variation 639476 639476 . . . alleles " C A"; frequencies " 0.725274725274725 0.274725274725275"; depth 91 ; unknown ; N/A GL193028.1 samtools variation 639526 639526 . . . alleles " G A"; frequencies " 0.725806451612903 0.274193548387097"; depth 124 ; known ; N/A GL193028.1 samtools variation 639596 639596 . . . alleles " A G"; frequencies " 0.457831325301205 0.542168674698795"; depth 83 ; unknown ; N/A GL193028.1 samtools variation 640263 640263 . . . alleles " G A"; frequencies " 0.696629213483146 0.303370786516854"; depth 89 ; unknown ; synonymous GL193028.1 samtools variation 640678 640678 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL193028.1 samtools variation 642013 642013 . . . alleles " G A"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; N/A GL193028.1 samtools variation 642528 642528 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193028.1 samtools variation 642815 642815 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL193028.1 samtools variation 642829 642829 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL193028.1 samtools variation 642884 642884 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 28 ; known ; N/A GL193028.1 samtools variation 643858 643858 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL193028.1 samtools variation 643944 643944 . . . alleles " G C"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; known ; N/A GL193028.1 samtools variation 644144 644144 . . . alleles " C T"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; known ; N/A GL193028.1 samtools variation 644170 644170 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL193028.1 samtools variation 644220 644220 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193028.1 samtools variation 644302 644302 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193028.1 samtools variation 644433 644433 . . . alleles " A G"; frequencies " 0.36 0.64"; depth 25 ; known ; N/A GL193028.1 samtools variation 644809 644809 . . . alleles " G T"; frequencies " 0.617021276595745 0.382978723404255"; depth 47 ; known ; N/A GL193028.1 samtools variation 645106 645106 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 57 ; known ; N/A GL193028.1 samtools variation 648613 648613 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 25 ; unknown ; N/A GL193028.1 samtools variation 649633 649633 . . . alleles " T G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193028.1 samtools variation 652666 652666 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193028.1 samtools variation 654607 654607 . . . alleles " C T"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; N/A GL193028.1 samtools variation 657760 657760 . . . alleles " C T"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; unknown ; N/A GL193028.1 samtools variation 664959 664959 . . . alleles " A T"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL193028.1 samtools variation 665207 665207 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193028.1 samtools variation 665223 665223 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193028.1 samtools variation 665359 665359 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL193028.1 samtools variation 675905 675905 . . . alleles " G A"; frequencies " 0.451923076923077 0.548076923076923"; depth 104 ; known ; N/A GL193028.1 samtools variation 676482 676482 . . . alleles " G T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193028.1 samtools variation 677308 677308 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193028.1 samtools variation 678015 678015 . . . alleles " T C"; frequencies " 0.422413793103448 0.577586206896552"; depth 116 ; known ; non-synonymous GL193028.1 samtools variation 678610 678610 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193028.1 samtools variation 680713 680713 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 45 ; unknown ; synonymous GL193028.1 samtools variation 680806 680806 . . . alleles " A C"; frequencies " 0.557377049180328 0.442622950819672"; depth 61 ; unknown ; N/A GL193028.1 samtools variation 680807 680807 . . . alleles " C T"; frequencies " 0.610169491525424 0.389830508474576"; depth 59 ; unknown ; N/A GL193028.1 samtools variation 680812 680812 . . . alleles " G A"; frequencies " 0.596491228070175 0.403508771929825"; depth 57 ; known ; N/A GL193028.1 samtools variation 680919 680919 . . . alleles " C T"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL193028.1 samtools variation 681242 681242 . . . alleles " T C"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL193028.1 samtools variation 681278 681278 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; unknown ; N/A GL193028.1 samtools variation 681353 681353 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; known ; N/A GL193028.1 samtools variation 681619 681619 . . . alleles " G A"; frequencies " 0.447368421052632 0.552631578947368"; depth 38 ; known ; N/A GL193028.1 samtools variation 682191 682191 . . . alleles " G T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193028.1 samtools variation 682203 682203 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193028.1 samtools variation 682362 682362 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193028.1 samtools variation 682734 682734 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; non-synonymous GL193028.1 samtools variation 682892 682892 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; non-synonymous GL193028.1 samtools variation 682981 682981 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; synonymous GL193028.1 samtools variation 691085 691085 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 22 ; unknown ; synonymous GL193028.1 samtools variation 691537 691537 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; non-synonymous GL193028.1 samtools variation 691604 691604 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; synonymous GL193028.1 samtools variation 694917 694917 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; non-synonymous GL193028.1 samtools variation 720070 720070 . . . alleles " C T"; frequencies " 0.48936170212766 0.51063829787234"; depth 47 ; known ; N/A GL193028.1 samtools variation 720755 720755 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL193028.1 samtools variation 722768 722768 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193028.1 samtools variation 724342 724342 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL193028.1 samtools variation 724346 724346 . . . alleles " T C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL193028.1 samtools variation 724470 724470 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL193028.1 samtools variation 725233 725233 . . . alleles " C G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193028.1 samtools variation 738315 738315 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193028.1 samtools variation 739393 739393 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193028.1 samtools variation 739442 739442 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL193028.1 samtools variation 739458 739458 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL193028.1 samtools variation 739460 739460 . . . alleles " G T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; known ; N/A GL193028.1 samtools variation 739549 739549 . . . alleles " C T"; frequencies " 0.450980392156863 0.549019607843137"; depth 51 ; known ; N/A GL193028.1 samtools variation 746741 746741 . . . alleles " C T"; frequencies " 0.359712230215827 0.640287769784173"; depth 139 ; unknown ; synonymous GL193028.1 samtools variation 748530 748530 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193028.1 samtools variation 798763 798763 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193029.1 samtools variation 491671 491671 . . . alleles " T G"; frequencies " 0.684210526315789 0.315789473684211"; depth 114 ; unknown ; synonymous GL193029.1 samtools variation 494404 494404 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 32 ; known ; synonymous GL193029.1 samtools variation 550401 550401 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL193029.1 samtools variation 622889 622889 . . . alleles " A C"; frequencies " 0.554455445544555 0.435643564356436"; depth 101 ; unknown ; synonymous GL193029.1 samtools variation 653406 653406 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; known ; N/A GL193029.1 samtools variation 782819 782819 . . . alleles " G A"; frequencies " 0.423076923076923 0.576923076923077"; depth 312 ; unknown ; N/A GL193029.1 samtools variation 947450 947450 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL193029.1 samtools variation 947510 947510 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; known ; N/A GL193030.1 samtools variation 34633 34633 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193030.1 samtools variation 35113 35113 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193030.1 samtools variation 38454 38454 . . . alleles " T C"; frequencies " 0.564102564102564 0.435897435897436"; depth 39 ; unknown ; N/A GL193030.1 samtools variation 38855 38855 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193030.1 samtools variation 40057 40057 . . . alleles " T C"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL193030.1 samtools variation 41712 41712 . . . alleles " T G"; frequencies " 0.282051282051282 0.717948717948718"; depth 39 ; unknown ; N/A GL193030.1 samtools variation 41777 41777 . . . alleles " C T"; frequencies " 0.339285714285714 0.660714285714286"; depth 56 ; unknown ; N/A GL193030.1 samtools variation 41891 41891 . . . alleles " G T"; frequencies " 0.44578313253012 0.55421686746988"; depth 83 ; unknown ; N/A GL193030.1 samtools variation 41902 41902 . . . alleles " G A"; frequencies " 0.422222222222222 0.577777777777778"; depth 90 ; unknown ; N/A GL193030.1 samtools variation 42108 42108 . . . alleles " T C"; frequencies " 0.289473684210526 0.710526315789474"; depth 38 ; unknown ; N/A GL193030.1 samtools variation 42269 42269 . . . alleles " A C"; frequencies " 0.631578947368421 0.368421052631579"; depth 57 ; unknown ; N/A GL193030.1 samtools variation 42332 42332 . . . alleles " C G"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; unknown ; N/A GL193030.1 samtools variation 42389 42389 . . . alleles " A G"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL193030.1 samtools variation 42412 42412 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL193030.1 samtools variation 42470 42470 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193030.1 samtools variation 42588 42588 . . . alleles " T C"; frequencies " 0.305555555555556 0.694444444444444"; depth 36 ; unknown ; N/A GL193030.1 samtools variation 42637 42637 . . . alleles " A G"; frequencies " 0.259259259259259 0.740740740740741"; depth 54 ; unknown ; N/A GL193030.1 samtools variation 42644 42644 . . . alleles " A G"; frequencies " 0.245614035087719 0.754385964912281"; depth 57 ; unknown ; N/A GL193030.1 samtools variation 42759 42759 . . . alleles " A G"; frequencies " 0.309859154929577 0.690140845070423"; depth 71 ; unknown ; N/A GL193030.1 samtools variation 42760 42760 . . . alleles " G A"; frequencies " 0.319444444444444 0.680555555555556"; depth 72 ; unknown ; N/A GL193030.1 samtools variation 42847 42847 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193030.1 samtools variation 43512 43512 . . . alleles " T C"; frequencies " 0.40625 0.59375"; depth 32 ; unknown ; N/A GL193030.1 samtools variation 43546 43546 . . . alleles " C T"; frequencies " 0.406779661016949 0.593220338983051"; depth 59 ; unknown ; N/A GL193030.1 samtools variation 44183 44183 . . . alleles " C T"; frequencies " 0.515789473684211 0.484210526315789"; depth 95 ; unknown ; N/A GL193030.1 samtools variation 45041 45041 . . . alleles " C G"; frequencies " 0.588235294117647 0.411764705882353"; depth 68 ; unknown ; non-synonymous GL193030.1 samtools variation 45478 45478 . . . alleles " C T"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; unknown ; N/A GL193030.1 samtools variation 45820 45820 . . . alleles " T C"; frequencies " 0.568627450980392 0.431372549019608"; depth 102 ; unknown ; N/A GL193030.1 samtools variation 46066 46066 . . . alleles " G A"; frequencies " 0.46 0.54"; depth 100 ; unknown ; N/A GL193030.1 samtools variation 46081 46081 . . . alleles " A G"; frequencies " 0.528089887640449 0.471910112359551"; depth 89 ; unknown ; N/A GL193030.1 samtools variation 46190 46190 . . . alleles " C T"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL193030.1 samtools variation 46191 46191 . . . alleles " C G"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL193030.1 samtools variation 46281 46281 . . . alleles " A T"; frequencies " 0.324324324324324 0.675675675675676"; depth 37 ; unknown ; N/A GL193030.1 samtools variation 46318 46318 . . . alleles " G T"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; unknown ; N/A GL193030.1 samtools variation 46544 46544 . . . alleles " T A"; frequencies " 0.641509433962264 0.358490566037736"; depth 53 ; unknown ; N/A GL193030.1 samtools variation 46602 46602 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 48 ; unknown ; N/A GL193030.1 samtools variation 46631 46631 . . . alleles " C T"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; unknown ; N/A GL193030.1 samtools variation 47039 47039 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 30 ; unknown ; N/A GL193030.1 samtools variation 47465 47465 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL193030.1 samtools variation 47469 47469 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193030.1 samtools variation 49046 49046 . . . alleles " A G"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; known ; N/A GL193030.1 samtools variation 54228 54228 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 66 ; unknown ; N/A GL193030.1 samtools variation 54908 54908 . . . alleles " A G"; frequencies " 0.483870967741935 0.516129032258065"; depth 62 ; known ; N/A GL193030.1 samtools variation 61396 61396 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL193030.1 samtools variation 62750 62750 . . . alleles " G T"; frequencies " 0.499145299145299 0.500854700854701"; depth 585 ; unknown ; N/A GL193030.1 samtools variation 677461 677461 . . . alleles " A G"; frequencies " 0.506493506493506 0.493506493506494"; depth 77 ; unknown ; non-synonymous GL193030.1 samtools variation 683992 683992 . . . alleles " T C"; frequencies " 0.292490118577075 0.707509881422925"; depth 506 ; unknown ; synonymous GL193030.1 samtools variation 684190 684190 . . . alleles " A G"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; unknown ; N/A GL193030.1 samtools variation 685304 685304 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193030.1 samtools variation 687344 687344 . . . alleles " C T"; frequencies " 0.222222222222222 0.777777777777778"; depth 36 ; unknown ; N/A GL193030.1 samtools variation 696999 696999 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL193031.1 samtools variation 1010493 1010493 . . . alleles " T G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193031.1 samtools variation 1010626 1010626 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; unknown ; N/A GL193032.1 samtools variation 368008 368008 . . . alleles " G A"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; synonymous GL193032.1 samtools variation 969109 969109 . . . alleles " T C"; frequencies " 0.254901960784314 0.745098039215686"; depth 51 ; unknown ; N/A GL193032.1 samtools variation 970276 970276 . . . alleles " C A"; frequencies " 0.340425531914894 0.659574468085106"; depth 47 ; known ; N/A GL193032.1 samtools variation 970548 970548 . . . alleles " T C"; frequencies " 0.747826086956522 0.252173913043478"; depth 115 ; unknown ; N/A GL193032.1 samtools variation 974107 974107 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193032.1 samtools variation 1017478 1017478 . . . alleles " T C"; frequencies " 0.699186991869919 0.300813008130081"; depth 123 ; unknown ; synonymous GL193033.1 samtools variation 31915 31915 . . . alleles " C T"; frequencies " 0.553846153846154 0.446153846153846"; depth 65 ; unknown ; synonymous GL193033.1 samtools variation 37220 37220 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 57 ; unknown ; synonymous GL193033.1 samtools variation 43795 43795 . . . alleles " C T"; frequencies " 0.37037037037037 0.62962962962963"; depth 108 ; known ; synonymous GL193033.1 samtools variation 159776 159776 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193033.1 samtools variation 159778 159778 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193033.1 samtools variation 167553 167553 . . . alleles " C T"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; known ; N/A GL193033.1 samtools variation 167857 167857 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193033.1 samtools variation 168122 168122 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; unknown ; N/A GL193033.1 samtools variation 168445 168445 . . . alleles " A G"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; known ; N/A GL193033.1 samtools variation 168518 168518 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 35 ; known ; N/A GL193033.1 samtools variation 168618 168618 . . . alleles " C A"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL193033.1 samtools variation 168833 168833 . . . alleles " C T"; frequencies " 0.512820512820513 0.487179487179487"; depth 39 ; known ; N/A GL193033.1 samtools variation 169383 169383 . . . alleles " A T"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; known ; N/A GL193033.1 samtools variation 169606 169606 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL193035.1 samtools variation 47344 47344 . . . alleles " G A"; frequencies " 0.580952380952381 0.419047619047619"; depth 105 ; unknown ; N/A GL193035.1 samtools variation 47470 47470 . . . alleles " C T"; frequencies " 0.567307692307692 0.432692307692308"; depth 104 ; unknown ; N/A GL193035.1 samtools variation 47812 47812 . . . alleles " A G"; frequencies " 0.701388888888889 0.298611111111111"; depth 144 ; unknown ; N/A GL193035.1 samtools variation 48468 48468 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193035.1 samtools variation 49843 49843 . . . alleles " T C"; frequencies " 0.655172413793103 0.344827586206897"; depth 58 ; unknown ; N/A GL193035.1 samtools variation 50592 50592 . . . alleles " T A"; frequencies " 0.783333333333333 0.216666666666667"; depth 120 ; unknown ; synonymous GL193035.1 samtools variation 506852 506852 . . . alleles " C T"; frequencies " 0.355932203389831 0.644067796610169"; depth 59 ; known ; N/A GL193035.1 samtools variation 507109 507109 . . . alleles " A C"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL193035.1 samtools variation 507457 507457 . . . alleles " T G"; frequencies " 0.655172413793103 0.344827586206897"; depth 58 ; known ; N/A GL193035.1 samtools variation 507793 507793 . . . alleles " G T"; frequencies " 0.627659574468085 0.372340425531915"; depth 94 ; known ; N/A GL193035.1 samtools variation 507920 507920 . . . alleles " G A"; frequencies " 0.732758620689655 0.267241379310345"; depth 116 ; known ; N/A GL193035.1 samtools variation 508290 508290 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; known ; synonymous GL193035.1 samtools variation 542886 542886 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193035.1 samtools variation 550395 550395 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 42 ; unknown ; N/A GL193035.1 samtools variation 550996 550996 . . . alleles " T G"; frequencies " 0.547619047619048 0.452380952380952"; depth 42 ; unknown ; N/A GL193035.1 samtools variation 552698 552698 . . . alleles " G C"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; unknown ; N/A GL193035.1 samtools variation 553812 553812 . . . alleles " T A"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL193035.1 samtools variation 583917 583917 . . . alleles " T C"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; unknown ; N/A GL193035.1 samtools variation 584119 584119 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193035.1 samtools variation 585741 585741 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL193035.1 samtools variation 585757 585757 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL193035.1 samtools variation 585977 585977 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193035.1 samtools variation 587416 587416 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL193035.1 samtools variation 588798 588798 . . . alleles " A G"; frequencies " 0.653495440729483 0.346504559270517"; depth 329 ; unknown ; N/A GL193035.1 samtools variation 588916 588916 . . . alleles " A G"; frequencies " 0.296296296296296 0.703703703703704"; depth 135 ; known ; N/A GL193035.1 samtools variation 591597 591597 . . . alleles " A T"; frequencies " 0.767441860465116 0.232558139534884"; depth 129 ; unknown ; N/A GL193035.1 samtools variation 594027 594027 . . . alleles " C A"; frequencies " 0.775280898876405 0.224719101123595"; depth 89 ; unknown ; N/A GL193035.1 samtools variation 594291 594291 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 140 ; unknown ; N/A GL193035.1 samtools variation 594534 594534 . . . alleles " C G"; frequencies " 0.727941176470588 0.272058823529412"; depth 136 ; unknown ; N/A GL193035.1 samtools variation 594711 594711 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL193035.1 samtools variation 595053 595053 . . . alleles " G A"; frequencies " 0.737226277372263 0.262773722627737"; depth 137 ; unknown ; N/A GL193035.1 samtools variation 596681 596681 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL193035.1 samtools variation 597670 597670 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; unknown ; N/A GL193035.1 samtools variation 597806 597806 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL193035.1 samtools variation 597936 597936 . . . alleles " T G"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; unknown ; N/A GL193035.1 samtools variation 598610 598610 . . . alleles " A C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193035.1 samtools variation 632131 632131 . . . alleles " T G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193035.1 samtools variation 651120 651120 . . . alleles " C T"; frequencies " 0.658031088082902 0.341968911917098"; depth 579 ; known ; N/A GL193035.1 samtools variation 654536 654536 . . . alleles " C A"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; unknown ; N/A GL193035.1 samtools variation 655091 655091 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL193035.1 samtools variation 674800 674800 . . . alleles " A G"; frequencies " 0.760683760683761 0.239316239316239"; depth 234 ; unknown ; N/A GL193035.1 samtools variation 675189 675189 . . . alleles " T G"; frequencies " 0.351351351351351 0.648648648648649"; depth 259 ; known ; N/A GL193035.1 samtools variation 682746 682746 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL193035.1 samtools variation 761688 761688 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193035.1 samtools variation 765782 765782 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193035.1 samtools variation 768495 768495 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193035.1 samtools variation 768582 768582 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; N/A GL193035.1 samtools variation 770036 770036 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL193035.1 samtools variation 776134 776134 . . . alleles " G A"; frequencies " 0.384297520661157 0.613636363636364"; depth 484 ; known ; synonymous GL193035.1 samtools variation 779599 779599 . . . alleles " A G"; frequencies " 0.686274509803922 0.313725490196078"; depth 51 ; known ; N/A GL193035.1 samtools variation 779891 779891 . . . alleles " G A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL193035.1 samtools variation 780859 780859 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL193035.1 samtools variation 787261 787261 . . . alleles " T C"; frequencies " 0.372549019607843 0.627450980392157"; depth 51 ; known ; N/A GL193035.1 samtools variation 789193 789193 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL193035.1 samtools variation 793590 793590 . . . alleles " A G"; frequencies " 0.668918918918919 0.331081081081081"; depth 148 ; known ; N/A GL193035.1 samtools variation 793630 793630 . . . alleles " T C"; frequencies " 0.30952380952381 0.69047619047619"; depth 210 ; known ; N/A GL193035.1 samtools variation 793935 793935 . . . alleles " G A"; frequencies " 0.508196721311475 0.491803278688525"; depth 61 ; known ; N/A GL193035.1 samtools variation 794135 794135 . . . alleles " T C"; frequencies " 0.712121212121212 0.287878787878788"; depth 132 ; known ; N/A GL193035.1 samtools variation 794566 794566 . . . alleles " T G"; frequencies " 0.604651162790698 0.395348837209302"; depth 86 ; known ; N/A GL193035.1 samtools variation 795596 795596 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 33 ; known ; N/A GL193035.1 samtools variation 796262 796262 . . . alleles " T C"; frequencies " 0.645161290322581 0.354838709677419"; depth 62 ; known ; N/A GL193035.1 samtools variation 796617 796617 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; known ; N/A GL193035.1 samtools variation 796767 796767 . . . alleles " A G"; frequencies " 0.589285714285714 0.410714285714286"; depth 56 ; known ; N/A GL193036.1 samtools variation 288037 288037 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193036.1 samtools variation 295140 295140 . . . alleles " C G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193036.1 samtools variation 295303 295303 . . . alleles " A G"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL193036.1 samtools variation 365374 365374 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 68 ; unknown ; N/A GL193036.1 samtools variation 369362 369362 . . . alleles " C T"; frequencies " 0.503432494279176 0.495423340961098"; depth 874 ; unknown ; synonymous GL193036.1 samtools variation 371057 371057 . . . alleles " A T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193036.1 samtools variation 371058 371058 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193036.1 samtools variation 377498 377498 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193036.1 samtools variation 383081 383081 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 85 ; unknown ; N/A GL193036.1 samtools variation 383218 383218 . . . alleles " G C"; frequencies " 0.585714285714286 0.414285714285714"; depth 70 ; unknown ; N/A GL193036.1 samtools variation 390808 390808 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193036.1 samtools variation 398904 398904 . . . alleles " C T"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL193036.1 samtools variation 398941 398941 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL193036.1 samtools variation 417535 417535 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL193036.1 samtools variation 417579 417579 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193036.1 samtools variation 418038 418038 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; N/A GL193036.1 samtools variation 422042 422042 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; N/A GL193036.1 samtools variation 424172 424172 . . . alleles " A T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL193036.1 samtools variation 424182 424182 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL193036.1 samtools variation 426148 426148 . . . alleles " G T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193036.1 samtools variation 428149 428149 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193036.1 samtools variation 429888 429888 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; known ; N/A GL193036.1 samtools variation 430031 430031 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL193036.1 samtools variation 439708 439708 . . . alleles " T G"; frequencies " 0.555555555555556 0.444444444444444"; depth 54 ; known ; N/A GL193036.1 samtools variation 439740 439740 . . . alleles " T G"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; known ; N/A GL193036.1 samtools variation 439772 439772 . . . alleles " A C"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; known ; N/A GL193036.1 samtools variation 442200 442200 . . . alleles " G A"; frequencies " 0.257575757575758 0.742424242424242"; depth 66 ; known ; N/A GL193036.1 samtools variation 443915 443915 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL193036.1 samtools variation 444140 444140 . . . alleles " C G"; frequencies " 0.783505154639175 0.216494845360825"; depth 97 ; known ; N/A GL193036.1 samtools variation 481129 481129 . . . alleles " A C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193036.1 samtools variation 487653 487653 . . . alleles " C G"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL193036.1 samtools variation 497594 497594 . . . alleles " A G"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; known ; N/A GL193036.1 samtools variation 508286 508286 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL193036.1 samtools variation 897036 897036 . . . alleles " A G"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; unknown ; synonymous GL193036.1 samtools variation 942997 942997 . . . alleles " A G"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; known ; N/A GL193036.1 samtools variation 943040 943040 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 50 ; unknown ; N/A GL193036.1 samtools variation 1000732 1000732 . . . alleles " C T"; frequencies " 0.716981132075472 0.283018867924528"; depth 106 ; known ; N/A GL193036.1 samtools variation 1002042 1002042 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL193036.1 samtools variation 1005037 1005037 . . . alleles " T C"; frequencies " 0.6821608040201 0.3178391959799"; depth 796 ; unknown ; N/A GL193036.1 samtools variation 1005134 1005134 . . . alleles " T G"; frequencies " 0.706199460916442 0.293800539083558"; depth 371 ; unknown ; N/A GL193036.1 samtools variation 1020554 1020554 . . . alleles " A G"; frequencies " 0.668122270742358 0.331877729257642"; depth 229 ; unknown ; non-synonymous GL193036.1 samtools variation 1023731 1023731 . . . alleles " T C"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL193036.1 samtools variation 1036355 1036355 . . . alleles " G A"; frequencies " 0.596577017114914 0.403422982885086"; depth 409 ; unknown ; non-synonymous GL193037.1 samtools variation 515678 515678 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; non-synonymous GL193037.1 samtools variation 586275 586275 . . . alleles " T A"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; known ; N/A GL193037.1 samtools variation 592615 592615 . . . alleles " G A"; frequencies " 0.589403973509934 0.410596026490066"; depth 151 ; known ; synonymous GL193037.1 samtools variation 593464 593464 . . . alleles " A G"; frequencies " 0.385714285714286 0.614285714285714"; depth 70 ; known ; N/A GL193037.1 samtools variation 601892 601892 . . . alleles " T G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193037.1 samtools variation 617940 617940 . . . alleles " A T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193037.1 samtools variation 640046 640046 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193037.1 samtools variation 674018 674018 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL193037.1 samtools variation 703031 703031 . . . alleles " C T"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; unknown ; synonymous GL193037.1 samtools variation 721278 721278 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 32 ; unknown ; synonymous GL193038.1 samtools variation 775313 775313 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; unknown ; synonymous GL193038.1 samtools variation 775316 775316 . . . alleles " G C"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; unknown ; synonymous GL193038.1 samtools variation 775355 775355 . . . alleles " C T"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; known ; synonymous GL193038.1 samtools variation 1024799 1024799 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; non-synonymous GL193038.1 samtools variation 1027158 1027158 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; synonymous GL193039.1 samtools variation 266671 266671 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193039.1 samtools variation 337186 337186 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 45 ; known ; N/A GL193039.1 samtools variation 337229 337229 . . . alleles " A G"; frequencies " 0.686746987951807 0.313253012048193"; depth 83 ; known ; N/A GL193039.1 samtools variation 337253 337253 . . . alleles " G A"; frequencies " 0.697368421052632 0.302631578947368"; depth 76 ; known ; N/A GL193039.1 samtools variation 337349 337349 . . . alleles " A G"; frequencies " 0.437125748502994 0.562874251497006"; depth 167 ; known ; N/A GL193039.1 samtools variation 337443 337443 . . . alleles " A G"; frequencies " 0.482758620689655 0.517241379310345"; depth 232 ; known ; N/A GL193039.1 samtools variation 337690 337690 . . . alleles " T C"; frequencies " 0.508928571428571 0.366071428571429"; depth 112 ; known ; N/A GL193039.1 samtools variation 337861 337861 . . . alleles " A G"; frequencies " 0.602150537634409 0.397849462365591"; depth 186 ; known ; non-synonymous GL193039.1 samtools variation 337955 337955 . . . alleles " T C"; frequencies " 0.644067796610169 0.355932203389831"; depth 236 ; known ; synonymous GL193039.1 samtools variation 338015 338015 . . . alleles " A G"; frequencies " 0.423841059602649 0.576158940397351"; depth 302 ; known ; synonymous GL193039.1 samtools variation 340800 340800 . . . alleles " A C"; frequencies " 0.413934426229508 0.586065573770492"; depth 244 ; known ; non-synonymous GL193039.1 samtools variation 341462 341462 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193039.1 samtools variation 341469 341469 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193039.1 samtools variation 342033 342033 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL193039.1 samtools variation 346929 346929 . . . alleles " G A"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; known ; synonymous GL193039.1 samtools variation 347073 347073 . . . alleles " A G"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; known ; synonymous GL193039.1 samtools variation 347321 347321 . . . alleles " A T"; frequencies " 0.65 0.35"; depth 40 ; unknown ; N/A GL193039.1 samtools variation 347431 347431 . . . alleles " C T"; frequencies " 0.487179487179487 0.512820512820513"; depth 39 ; known ; N/A GL193039.1 samtools variation 348205 348205 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193039.1 samtools variation 348935 348935 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193039.1 samtools variation 571809 571809 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; non-synonymous GL193039.1 samtools variation 588886 588886 . . . alleles " C T"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; unknown ; N/A GL193039.1 samtools variation 640618 640618 . . . alleles " G A"; frequencies " 0.574468085106383 0.425531914893617"; depth 47 ; known ; non-synonymous GL193039.1 samtools variation 641245 641245 . . . alleles " C T"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; non-synonymous GL193039.1 samtools variation 751627 751627 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 81 ; unknown ; N/A GL193039.1 samtools variation 754608 754608 . . . alleles " C T"; frequencies " 0.317073170731707 0.682926829268293"; depth 41 ; unknown ; non-synonymous GL193039.1 samtools variation 782884 782884 . . . alleles " T C"; frequencies " 0.287671232876712 0.712328767123288"; depth 73 ; known ; synonymous GL193039.1 samtools variation 822624 822624 . . . alleles " T A"; frequencies " 0.29136690647482 0.70863309352518"; depth 278 ; known ; N/A GL193039.1 samtools variation 855038 855038 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL193039.1 samtools variation 857808 857808 . . . alleles " A G"; frequencies " 0.597014925373134 0.402985074626866"; depth 67 ; unknown ; N/A GL193039.1 samtools variation 915552 915552 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193039.1 samtools variation 925948 925948 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 46 ; unknown ; N/A GL193039.1 samtools variation 925997 925997 . . . alleles " T C"; frequencies " 0.387755102040816 0.612244897959184"; depth 49 ; known ; N/A GL193039.1 samtools variation 929042 929042 . . . alleles " G A"; frequencies " 0.622222222222222 0.377777777777778"; depth 45 ; unknown ; N/A GL193039.1 samtools variation 929223 929223 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL193040.1 samtools variation 237533 237533 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 25 ; unknown ; non-synonymous GL193040.1 samtools variation 311737 311737 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193040.1 samtools variation 514398 514398 . . . alleles " G A"; frequencies " 0.291666666666667 0.708333333333333"; depth 72 ; unknown ; N/A GL193040.1 samtools variation 781909 781909 . . . alleles " A C"; frequencies " 0.351851851851852 0.648148148148148"; depth 54 ; unknown ; N/A GL193040.1 samtools variation 788451 788451 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL193040.1 samtools variation 793072 793072 . . . alleles " G A"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL193040.1 samtools variation 907470 907470 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193041.1 samtools variation 246143 246143 . . . alleles " G A"; frequencies " 0.438202247191011 0.561797752808989"; depth 178 ; unknown ; N/A GL193041.1 samtools variation 246274 246274 . . . alleles " G A"; frequencies " 0.673684210526316 0.326315789473684"; depth 95 ; unknown ; N/A GL193041.1 samtools variation 270833 270833 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 150 ; unknown ; N/A GL193041.1 samtools variation 272786 272786 . . . alleles " T C"; frequencies " 0.595441595441595 0.404558404558405"; depth 351 ; unknown ; non-synonymous GL193041.1 samtools variation 276162 276162 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL193041.1 samtools variation 276178 276178 . . . alleles " C A"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL193041.1 samtools variation 354936 354936 . . . alleles " T C"; frequencies " 0.518134715025907 0.481865284974093"; depth 579 ; unknown ; synonymous GL193041.1 samtools variation 382718 382718 . . . alleles " C G"; frequencies " 0.791208791208791 0.208791208791209"; depth 91 ; unknown ; N/A GL193041.1 samtools variation 384338 384338 . . . alleles " T G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193041.1 samtools variation 387884 387884 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL193041.1 samtools variation 390207 390207 . . . alleles " A T"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL193041.1 samtools variation 392907 392907 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL193041.1 samtools variation 392985 392985 . . . alleles " T C"; frequencies " 0.693877551020408 0.306122448979592"; depth 49 ; unknown ; N/A GL193041.1 samtools variation 393314 393314 . . . alleles " C T"; frequencies " 0.576923076923077 0.423076923076923"; depth 52 ; unknown ; N/A GL193041.1 samtools variation 394340 394340 . . . alleles " T C"; frequencies " 0.658536585365854 0.341463414634146"; depth 41 ; unknown ; synonymous GL193041.1 samtools variation 395321 395321 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193041.1 samtools variation 395420 395420 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 64 ; unknown ; synonymous GL193041.1 samtools variation 400010 400010 . . . alleles " G C"; frequencies " 0.618705035971223 0.381294964028777"; depth 139 ; unknown ; N/A GL193041.1 samtools variation 400655 400655 . . . alleles " C T"; frequencies " 0.557692307692308 0.442307692307692"; depth 52 ; unknown ; N/A GL193041.1 samtools variation 400816 400816 . . . alleles " C T"; frequencies " 0.305084745762712 0.694915254237288"; depth 59 ; unknown ; N/A GL193041.1 samtools variation 400968 400968 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 78 ; unknown ; N/A GL193041.1 samtools variation 400983 400983 . . . alleles " G A"; frequencies " 0.542168674698795 0.457831325301205"; depth 83 ; unknown ; N/A GL193041.1 samtools variation 401220 401220 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL193041.1 samtools variation 401414 401414 . . . alleles " G A"; frequencies " 0.490336435218325 0.509663564781675"; depth 1397 ; unknown ; synonymous GL193041.1 samtools variation 401724 401724 . . . alleles " A G"; frequencies " 0.609756097560976 0.390243902439024"; depth 41 ; unknown ; N/A GL193041.1 samtools variation 401925 401925 . . . alleles " G C"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; unknown ; N/A GL193041.1 samtools variation 403185 403185 . . . alleles " G A"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL193041.1 samtools variation 404020 404020 . . . alleles " G A"; frequencies " 0.763440860215054 0.236559139784946"; depth 186 ; unknown ; N/A GL193041.1 samtools variation 404022 404022 . . . alleles " G A"; frequencies " 0.774193548387097 0.225806451612903"; depth 186 ; unknown ; N/A GL193041.1 samtools variation 404111 404111 . . . alleles " C T"; frequencies " 0.509933774834437 0.490066225165563"; depth 151 ; unknown ; N/A GL193041.1 samtools variation 404123 404123 . . . alleles " C G"; frequencies " 0.469798657718121 0.530201342281879"; depth 149 ; unknown ; N/A GL193041.1 samtools variation 425588 425588 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 20 ; unknown ; non-synonymous GL193041.1 samtools variation 448805 448805 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193041.1 samtools variation 451962 451962 . . . alleles " T G"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; unknown ; N/A GL193041.1 samtools variation 463448 463448 . . . alleles " C T"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL193041.1 samtools variation 483505 483505 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193041.1 samtools variation 499551 499551 . . . alleles " T G"; frequencies " 0.733727810650888 0.254437869822485"; depth 169 ; unknown ; N/A GL193041.1 samtools variation 507327 507327 . . . alleles " T C"; frequencies " 0.255813953488372 0.744186046511628"; depth 43 ; unknown ; N/A GL193041.1 samtools variation 511983 511983 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193041.1 samtools variation 519484 519484 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193041.1 samtools variation 520754 520754 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL193041.1 samtools variation 522231 522231 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 48 ; unknown ; N/A GL193041.1 samtools variation 523303 523303 . . . alleles " C T"; frequencies " 0.59375 0.40625"; depth 96 ; unknown ; synonymous GL193041.1 samtools variation 523735 523735 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193041.1 samtools variation 524974 524974 . . . alleles " C T"; frequencies " 0.734177215189873 0.265822784810127"; depth 79 ; unknown ; N/A GL193041.1 samtools variation 525030 525030 . . . alleles " A G"; frequencies " 0.630434782608696 0.369565217391304"; depth 46 ; unknown ; N/A GL193041.1 samtools variation 527699 527699 . . . alleles " T C"; frequencies " 0.433566433566434 0.566433566433566"; depth 1144 ; unknown ; N/A GL193041.1 samtools variation 527835 527835 . . . alleles " T C"; frequencies " 0.42379679144385 0.57620320855615"; depth 748 ; unknown ; N/A GL193041.1 samtools variation 531618 531618 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193041.1 samtools variation 548605 548605 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 45 ; unknown ; N/A GL193041.1 samtools variation 552643 552643 . . . alleles " G C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193041.1 samtools variation 555738 555738 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193041.1 samtools variation 558199 558199 . . . alleles " T C"; frequencies " 0.482905982905983 0.517094017094017"; depth 234 ; unknown ; N/A GL193041.1 samtools variation 558438 558438 . . . alleles " A G"; frequencies " 0.211267605633803 0.788732394366197"; depth 71 ; unknown ; N/A GL193041.1 samtools variation 558672 558672 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193041.1 samtools variation 562035 562035 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL193041.1 samtools variation 622310 622310 . . . alleles " T C"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL193041.1 samtools variation 624255 624255 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL193041.1 samtools variation 626568 626568 . . . alleles " C T"; frequencies " 0.638297872340426 0.361702127659574"; depth 47 ; unknown ; N/A GL193041.1 samtools variation 629568 629568 . . . alleles " A G"; frequencies " 0.336448598130841 0.663551401869159"; depth 535 ; unknown ; N/A GL193041.1 samtools variation 730293 730293 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 42 ; unknown ; N/A GL193041.1 samtools variation 730488 730488 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193041.1 samtools variation 760180 760180 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL193041.1 samtools variation 765907 765907 . . . alleles " C T"; frequencies " 0.260416666666667 0.739583333333333"; depth 96 ; unknown ; non-synonymous GL193041.1 samtools variation 779291 779291 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193041.1 samtools variation 787360 787360 . . . alleles " G A"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; unknown ; N/A GL193041.1 samtools variation 900121 900121 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193041.1 samtools variation 906923 906923 . . . alleles " G T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL193041.1 samtools variation 907104 907104 . . . alleles " T C"; frequencies " 0.604166666666667 0.395833333333333"; depth 48 ; unknown ; N/A GL193041.1 samtools variation 907228 907228 . . . alleles " T C"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL193041.1 samtools variation 907509 907509 . . . alleles " A T"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL193041.1 samtools variation 918902 918902 . . . alleles " A G"; frequencies " 0.556603773584906 0.443396226415094"; depth 106 ; unknown ; N/A GL193041.1 samtools variation 919138 919138 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 135 ; unknown ; N/A GL193041.1 samtools variation 930534 930534 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193041.1 samtools variation 931984 931984 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193041.1 samtools variation 935689 935689 . . . alleles " A G"; frequencies " 0.53968253968254 0.444444444444444"; depth 126 ; unknown ; synonymous GL193042.1 samtools variation 753269 753269 . . . alleles " A T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193042.1 samtools variation 846724 846724 . . . alleles " T C"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL193042.1 samtools variation 853275 853275 . . . alleles " A T"; frequencies " 0.571428571428571 0.428571428571429"; depth 49 ; unknown ; non-synonymous GL193044.1 samtools variation 74 74 . . . alleles " C T"; frequencies " 0.323232323232323 0.676767676767677"; depth 198 ; unknown ; N/A GL193044.1 samtools variation 8725 8725 . . . alleles " C T"; frequencies " 0.771739130434783 0.228260869565217"; depth 92 ; unknown ; synonymous GL193044.1 samtools variation 33003 33003 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; synonymous GL193044.1 samtools variation 70108 70108 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; synonymous GL193044.1 samtools variation 222741 222741 . . . alleles " G T"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL193044.1 samtools variation 222769 222769 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193044.1 samtools variation 222933 222933 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193044.1 samtools variation 269499 269499 . . . alleles " T A"; frequencies " 0.765625 0.234375"; depth 128 ; known ; N/A GL193044.1 samtools variation 269624 269624 . . . alleles " C A"; frequencies " 0.671052631578947 0.328947368421053"; depth 76 ; unknown ; N/A GL193044.1 samtools variation 462902 462902 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; known ; synonymous GL193044.1 samtools variation 466623 466623 . . . alleles " T C"; frequencies " 0.493506493506494 0.506493506493506"; depth 77 ; known ; synonymous GL193044.1 samtools variation 467837 467837 . . . alleles " T C"; frequencies " 0.278481012658228 0.721518987341772"; depth 79 ; known ; synonymous GL193044.1 samtools variation 469625 469625 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; known ; N/A GL193044.1 samtools variation 469655 469655 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 20 ; known ; N/A GL193044.1 samtools variation 473117 473117 . . . alleles " T C"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL193044.1 samtools variation 473455 473455 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193044.1 samtools variation 473509 473509 . . . alleles " T C"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; N/A GL193044.1 samtools variation 475882 475882 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193044.1 samtools variation 488414 488414 . . . alleles " C T"; frequencies " 0.393665158371041 0.606334841628959"; depth 221 ; unknown ; synonymous GL193044.1 samtools variation 491972 491972 . . . alleles " C T"; frequencies " 0.244360902255639 0.753759398496241"; depth 532 ; known ; synonymous GL193044.1 samtools variation 492694 492694 . . . alleles " T A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193044.1 samtools variation 495598 495598 . . . alleles " G A"; frequencies " 0.415584415584416 0.584415584415584"; depth 231 ; known ; N/A GL193044.1 samtools variation 499071 499071 . . . alleles " T C"; frequencies " 0.760416666666667 0.239583333333333"; depth 96 ; unknown ; N/A GL193044.1 samtools variation 499147 499147 . . . alleles " C T"; frequencies " 0.753623188405797 0.246376811594203"; depth 69 ; unknown ; N/A GL193044.1 samtools variation 499205 499205 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL193044.1 samtools variation 506199 506199 . . . alleles " T C"; frequencies " 0.341269841269841 0.658730158730159"; depth 252 ; known ; N/A GL193044.1 samtools variation 506653 506653 . . . alleles " C T"; frequencies " 0.360902255639098 0.639097744360902"; depth 133 ; known ; N/A GL193044.1 samtools variation 506850 506850 . . . alleles " T G"; frequencies " 0.661631419939577 0.338368580060423"; depth 331 ; known ; N/A GL193044.1 samtools variation 506999 506999 . . . alleles " T C"; frequencies " 0.707482993197279 0.292517006802721"; depth 294 ; known ; N/A GL193044.1 samtools variation 507390 507390 . . . alleles " C T"; frequencies " 0.656746031746032 0.343253968253968"; depth 504 ; known ; N/A GL193044.1 samtools variation 507489 507489 . . . alleles " T C"; frequencies " 0.571830985915493 0.428169014084507"; depth 355 ; known ; N/A GL193044.1 samtools variation 508103 508103 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193044.1 samtools variation 508179 508179 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193044.1 samtools variation 508621 508621 . . . alleles " C G"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; known ; N/A GL193044.1 samtools variation 508715 508715 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL193044.1 samtools variation 508753 508753 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193044.1 samtools variation 508864 508864 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL193044.1 samtools variation 511056 511056 . . . alleles " T G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193044.1 samtools variation 522302 522302 . . . alleles " C T"; frequencies " 0.680701754385965 0.319298245614035"; depth 285 ; known ; synonymous GL193044.1 samtools variation 526516 526516 . . . alleles " G A"; frequencies " 0.770491803278688 0.229508196721311"; depth 61 ; unknown ; N/A GL193044.1 samtools variation 526561 526561 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 92 ; unknown ; N/A GL193044.1 samtools variation 526772 526772 . . . alleles " G A"; frequencies " 0.652777777777778 0.347222222222222"; depth 72 ; unknown ; N/A GL193044.1 samtools variation 527043 527043 . . . alleles " A G"; frequencies " 0.738461538461539 0.261538461538462"; depth 130 ; unknown ; N/A GL193044.1 samtools variation 527083 527083 . . . alleles " A G"; frequencies " 0.703947368421053 0.296052631578947"; depth 152 ; unknown ; N/A GL193044.1 samtools variation 527150 527150 . . . alleles " A G"; frequencies " 0.673333333333333 0.326666666666667"; depth 150 ; unknown ; N/A GL193044.1 samtools variation 527181 527181 . . . alleles " T C"; frequencies " 0.747126436781609 0.252873563218391"; depth 87 ; unknown ; N/A GL193044.1 samtools variation 527275 527275 . . . alleles " T C"; frequencies " 0.732824427480916 0.267175572519084"; depth 131 ; unknown ; N/A GL193044.1 samtools variation 527747 527747 . . . alleles " A G"; frequencies " 0.392670157068063 0.607329842931937"; depth 191 ; known ; N/A GL193044.1 samtools variation 527838 527838 . . . alleles " T C"; frequencies " 0.684563758389262 0.315436241610738"; depth 149 ; unknown ; N/A GL193044.1 samtools variation 528015 528015 . . . alleles " T C"; frequencies " 0.741071428571429 0.258928571428571"; depth 112 ; unknown ; N/A GL193044.1 samtools variation 528018 528018 . . . alleles " T C"; frequencies " 0.754545454545455 0.245454545454545"; depth 110 ; unknown ; N/A GL193044.1 samtools variation 690824 690824 . . . alleles " G A"; frequencies " 0.344262295081967 0.655737704918033"; depth 61 ; unknown ; N/A GL193044.1 samtools variation 693722 693722 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 135 ; unknown ; N/A GL193044.1 samtools variation 694094 694094 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL193044.1 samtools variation 694751 694751 . . . alleles " C A"; frequencies " 0.587786259541985 0.412213740458015"; depth 131 ; known ; N/A GL193044.1 samtools variation 694920 694920 . . . alleles " A G"; frequencies " 0.754545454545455 0.245454545454545"; depth 220 ; known ; N/A GL193044.1 samtools variation 700077 700077 . . . alleles " G A"; frequencies " 0.766917293233083 0.233082706766917"; depth 399 ; unknown ; N/A GL193044.1 samtools variation 713239 713239 . . . alleles " T C"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL193044.1 samtools variation 713302 713302 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193044.1 samtools variation 718604 718604 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193044.1 samtools variation 748968 748968 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL193044.1 samtools variation 749058 749058 . . . alleles " C G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL193044.1 samtools variation 749107 749107 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193044.1 samtools variation 750802 750802 . . . alleles " G A"; frequencies " 0.798850574712644 0.201149425287356"; depth 174 ; unknown ; N/A GL193044.1 samtools variation 751055 751055 . . . alleles " C T"; frequencies " 0.697916666666667 0.302083333333333"; depth 96 ; known ; N/A GL193044.1 samtools variation 753005 753005 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193044.1 samtools variation 753121 753121 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL193044.1 samtools variation 753172 753172 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL193044.1 samtools variation 753555 753555 . . . alleles " G A"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL193044.1 samtools variation 753689 753689 . . . alleles " C T"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; known ; N/A GL193044.1 samtools variation 753725 753725 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 32 ; known ; N/A GL193044.1 samtools variation 754112 754112 . . . alleles " A G"; frequencies " 0.652173913043478 0.347826086956522"; depth 92 ; known ; N/A GL193044.1 samtools variation 754296 754296 . . . alleles " T G"; frequencies " 0.46969696969697 0.53030303030303"; depth 66 ; known ; N/A GL193044.1 samtools variation 754607 754607 . . . alleles " C T"; frequencies " 0.773584905660377 0.226415094339623"; depth 53 ; unknown ; N/A GL193044.1 samtools variation 754892 754892 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL193044.1 samtools variation 755012 755012 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 52 ; known ; synonymous GL193044.1 samtools variation 755366 755366 . . . alleles " C G"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; synonymous GL193044.1 samtools variation 755446 755446 . . . alleles " C T"; frequencies " 0.48936170212766 0.51063829787234"; depth 47 ; known ; N/A GL193044.1 samtools variation 755505 755505 . . . alleles " G T"; frequencies " 0.470588235294118 0.529411764705882"; depth 102 ; known ; N/A GL193044.1 samtools variation 755674 755674 . . . alleles " C T"; frequencies " 0.289473684210526 0.710526315789474"; depth 38 ; known ; non-synonymous GL193044.1 samtools variation 757198 757198 . . . alleles " T C"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL193044.1 samtools variation 757911 757911 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193044.1 samtools variation 757938 757938 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193044.1 samtools variation 759730 759730 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193044.1 samtools variation 759839 759839 . . . alleles " T C"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL193044.1 samtools variation 786383 786383 . . . alleles " T C"; frequencies " 0.373333333333333 0.626666666666667"; depth 75 ; known ; synonymous GL193044.1 samtools variation 794652 794652 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 30 ; known ; synonymous GL193044.1 samtools variation 794966 794966 . . . alleles " G A"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; known ; N/A GL193044.1 samtools variation 797705 797705 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193044.1 samtools variation 810620 810620 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL193044.1 samtools variation 819448 819448 . . . alleles " G C"; frequencies " 0.704 0.296"; depth 125 ; unknown ; N/A GL193044.1 samtools variation 820938 820938 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 50 ; known ; N/A GL193044.1 samtools variation 904702 904702 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193044.1 samtools variation 904984 904984 . . . alleles " C A"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; unknown ; N/A GL193044.1 samtools variation 908997 908997 . . . alleles " G A"; frequencies " 0.54954954954955 0.45045045045045"; depth 111 ; unknown ; synonymous GL193044.1 samtools variation 913040 913040 . . . alleles " A C"; frequencies " 0.272727272727273 0.727272727272727"; depth 55 ; unknown ; N/A GL193044.1 samtools variation 917491 917491 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL193044.1 samtools variation 923091 923091 . . . alleles " C G"; frequencies " 0.773584905660377 0.226415094339623"; depth 106 ; unknown ; N/A GL193044.1 samtools variation 923144 923144 . . . alleles " T C"; frequencies " 0.791208791208791 0.208791208791209"; depth 91 ; unknown ; N/A GL193044.1 samtools variation 923166 923166 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 72 ; unknown ; N/A GL193044.1 samtools variation 924676 924676 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193044.1 samtools variation 925051 925051 . . . alleles " C T"; frequencies " 0.763157894736842 0.236842105263158"; depth 114 ; unknown ; N/A GL193044.1 samtools variation 925376 925376 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 54 ; unknown ; N/A GL193044.1 samtools variation 925730 925730 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 45 ; unknown ; N/A GL193044.1 samtools variation 925812 925812 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; N/A GL193044.1 samtools variation 926872 926872 . . . alleles " T G"; frequencies " 0.304347826086957 0.695652173913043"; depth 46 ; unknown ; N/A GL193044.1 samtools variation 926971 926971 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 48 ; unknown ; N/A GL193044.1 samtools variation 940160 940160 . . . alleles " G A"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; synonymous GL193044.1 samtools variation 941966 941966 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193044.1 samtools variation 949699 949699 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193044.1 samtools variation 949721 949721 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193044.1 samtools variation 952702 952702 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; non-synonymous GL193044.1 samtools variation 1021484 1021484 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 85 ; unknown ; N/A GL193044.1 samtools variation 1021826 1021826 . . . alleles " C T"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL193044.1 samtools variation 1022149 1022149 . . . alleles " G A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; N/A GL193044.1 samtools variation 1027280 1027280 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 52 ; unknown ; synonymous GL193045.1 samtools variation 4718 4718 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193045.1 samtools variation 153408 153408 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; known ; N/A GL193045.1 samtools variation 154030 154030 . . . alleles " G A"; frequencies " 0.215686274509804 0.784313725490196"; depth 51 ; unknown ; N/A GL193045.1 samtools variation 154072 154072 . . . alleles " T C"; frequencies " 0.211764705882353 0.788235294117647"; depth 85 ; unknown ; N/A GL193045.1 samtools variation 154313 154313 . . . alleles " T C"; frequencies " 0.233333333333333 0.766666666666667"; depth 30 ; known ; N/A GL193045.1 samtools variation 154435 154435 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193045.1 samtools variation 154537 154537 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193045.1 samtools variation 155045 155045 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193045.1 samtools variation 155170 155170 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193045.1 samtools variation 156419 156419 . . . alleles " A C"; frequencies " 0.687861271676301 0.312138728323699"; depth 173 ; known ; N/A GL193045.1 samtools variation 156450 156450 . . . alleles " A G"; frequencies " 0.648 0.352"; depth 125 ; unknown ; N/A GL193045.1 samtools variation 156506 156506 . . . alleles " T C"; frequencies " 0.569105691056911 0.430894308943089"; depth 123 ; known ; N/A GL193045.1 samtools variation 157454 157454 . . . alleles " T A"; frequencies " 0.359550561797753 0.640449438202247"; depth 89 ; known ; N/A GL193045.1 samtools variation 157589 157589 . . . alleles " A G"; frequencies " 0.358490566037736 0.641509433962264"; depth 53 ; known ; N/A GL193045.1 samtools variation 157973 157973 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 25 ; known ; N/A GL193045.1 samtools variation 160363 160363 . . . alleles " G A"; frequencies " 0.665354330708661 0.334645669291339"; depth 254 ; unknown ; N/A GL193045.1 samtools variation 161143 161143 . . . alleles " T A"; frequencies " 0.573333333333333 0.426666666666667"; depth 75 ; unknown ; N/A GL193045.1 samtools variation 161269 161269 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 88 ; known ; N/A GL193045.1 samtools variation 161350 161350 . . . alleles " G A"; frequencies " 0.413333333333333 0.586666666666667"; depth 75 ; known ; N/A GL193045.1 samtools variation 161563 161563 . . . alleles " T C"; frequencies " 0.522935779816514 0.477064220183486"; depth 109 ; known ; N/A GL193045.1 samtools variation 161575 161575 . . . alleles " G A"; frequencies " 0.524752475247525 0.475247524752475"; depth 101 ; known ; N/A GL193045.1 samtools variation 161682 161682 . . . alleles " T C"; frequencies " 0.694444444444444 0.305555555555556"; depth 144 ; unknown ; N/A GL193045.1 samtools variation 161736 161736 . . . alleles " A G"; frequencies " 0.71264367816092 0.275862068965517"; depth 87 ; unknown ; N/A GL193045.1 samtools variation 162206 162206 . . . alleles " T G"; frequencies " 0.605882352941176 0.394117647058824"; depth 170 ; known ; N/A GL193045.1 samtools variation 162296 162296 . . . alleles " A G"; frequencies " 0.673076923076923 0.326923076923077"; depth 52 ; unknown ; N/A GL193045.1 samtools variation 162947 162947 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; unknown ; N/A GL193045.1 samtools variation 163253 163253 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 75 ; unknown ; N/A GL193045.1 samtools variation 163300 163300 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193045.1 samtools variation 163762 163762 . . . alleles " A G"; frequencies " 0.71900826446281 0.28099173553719"; depth 121 ; known ; N/A GL193045.1 samtools variation 164452 164452 . . . alleles " A G"; frequencies " 0.517857142857143 0.482142857142857"; depth 56 ; known ; N/A GL193045.1 samtools variation 165297 165297 . . . alleles " T A"; frequencies " 0.78494623655914 0.21505376344086"; depth 93 ; unknown ; N/A GL193045.1 samtools variation 165379 165379 . . . alleles " A G"; frequencies " 0.394957983193277 0.605042016806723"; depth 119 ; unknown ; N/A GL193045.1 samtools variation 165499 165499 . . . alleles " T G"; frequencies " 0.450381679389313 0.549618320610687"; depth 131 ; unknown ; N/A GL193045.1 samtools variation 165558 165558 . . . alleles " G C"; frequencies " 0.466019417475728 0.533980582524272"; depth 103 ; unknown ; N/A GL193045.1 samtools variation 165753 165753 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL193045.1 samtools variation 165779 165779 . . . alleles " G A"; frequencies " 0.707692307692308 0.292307692307692"; depth 65 ; unknown ; N/A GL193045.1 samtools variation 165809 165809 . . . alleles " C T"; frequencies " 0.707692307692308 0.292307692307692"; depth 65 ; unknown ; N/A GL193045.1 samtools variation 165992 165992 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL193045.1 samtools variation 166024 166024 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 40 ; known ; N/A GL193045.1 samtools variation 166059 166059 . . . alleles " G A"; frequencies " 0.63013698630137 0.36986301369863"; depth 73 ; unknown ; N/A GL193045.1 samtools variation 166300 166300 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 56 ; unknown ; N/A GL193045.1 samtools variation 166459 166459 . . . alleles " C T"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL193045.1 samtools variation 167456 167456 . . . alleles " A G"; frequencies " 0.56 0.44"; depth 50 ; unknown ; N/A GL193045.1 samtools variation 168211 168211 . . . alleles " G A"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; N/A GL193045.1 samtools variation 168253 168253 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 48 ; unknown ; N/A GL193045.1 samtools variation 168299 168299 . . . alleles " C A"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL193045.1 samtools variation 169828 169828 . . . alleles " T A"; frequencies " 0.578313253012048 0.421686746987952"; depth 83 ; unknown ; N/A GL193045.1 samtools variation 169837 169837 . . . alleles " T C"; frequencies " 0.2375 0.7625"; depth 80 ; known ; N/A GL193045.1 samtools variation 172147 172147 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193045.1 samtools variation 173541 173541 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL193045.1 samtools variation 174346 174346 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL193045.1 samtools variation 174541 174541 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193045.1 samtools variation 174838 174838 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193045.1 samtools variation 176717 176717 . . . alleles " G A"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; N/A GL193045.1 samtools variation 176951 176951 . . . alleles " T C"; frequencies " 0.649484536082474 0.350515463917526"; depth 97 ; unknown ; N/A GL193045.1 samtools variation 177238 177238 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL193045.1 samtools variation 177558 177558 . . . alleles " T G"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL193045.1 samtools variation 178088 178088 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193045.1 samtools variation 178179 178179 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193045.1 samtools variation 178260 178260 . . . alleles " A G"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL193045.1 samtools variation 179339 179339 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL193045.1 samtools variation 179429 179429 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193045.1 samtools variation 179477 179477 . . . alleles " G C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL193045.1 samtools variation 185833 185833 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193045.1 samtools variation 331062 331062 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL193045.1 samtools variation 332117 332117 . . . alleles " C T"; frequencies " 0.567125645438898 0.432874354561102"; depth 1162 ; unknown ; synonymous GL193045.1 samtools variation 332135 332135 . . . alleles " G A"; frequencies " 0.710144927536232 0.287625418060201"; depth 897 ; unknown ; synonymous GL193045.1 samtools variation 332706 332706 . . . alleles " C T"; frequencies " 0.576119402985075 0.423880597014925"; depth 335 ; unknown ; synonymous GL193045.1 samtools variation 338217 338217 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193045.1 samtools variation 343315 343315 . . . alleles " C T"; frequencies " 0.578384798099763 0.421615201900238"; depth 842 ; unknown ; synonymous GL193045.1 samtools variation 463278 463278 . . . alleles " C T"; frequencies " 0.353760445682451 0.646239554317549"; depth 359 ; known ; N/A GL193045.1 samtools variation 465824 465824 . . . alleles " C T"; frequencies " 0.790123456790123 0.209876543209877"; depth 243 ; unknown ; N/A GL193045.1 samtools variation 466121 466121 . . . alleles " T C"; frequencies " 0.275862068965517 0.724137931034483"; depth 87 ; known ; N/A GL193045.1 samtools variation 466206 466206 . . . alleles " C T"; frequencies " 0.795246800731261 0.204753199268739"; depth 547 ; unknown ; N/A GL193045.1 samtools variation 469167 469167 . . . alleles " G C"; frequencies " 0.529411764705882 0.411764705882353"; depth 17 ; known ; N/A GL193045.1 samtools variation 469776 469776 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193045.1 samtools variation 469997 469997 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193045.1 samtools variation 474547 474547 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL193045.1 samtools variation 476825 476825 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193045.1 samtools variation 477790 477790 . . . alleles " T C"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL193045.1 samtools variation 477986 477986 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193045.1 samtools variation 480359 480359 . . . alleles " C T"; frequencies " 0.49290780141844 0.50354609929078"; depth 282 ; known ; synonymous GL193045.1 samtools variation 490273 490273 . . . alleles " G T"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL193045.1 samtools variation 666691 666691 . . . alleles " G T"; frequencies " 0.791075050709939 0.206896551724138"; depth 493 ; known ; non-synonymous GL193045.1 samtools variation 677734 677734 . . . alleles " G A"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL193045.1 samtools variation 864042 864042 . . . alleles " G T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL193045.1 samtools variation 875748 875748 . . . alleles " A C"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL193045.1 samtools variation 880153 880153 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL193045.1 samtools variation 882892 882892 . . . alleles " C T"; frequencies " 0.390243902439024 0.609756097560976"; depth 41 ; known ; N/A GL193045.1 samtools variation 882899 882899 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193045.1 samtools variation 883579 883579 . . . alleles " C T"; frequencies " 0.28125 0.71875"; depth 32 ; known ; N/A GL193045.1 samtools variation 893684 893684 . . . alleles " A G"; frequencies " 0.251612903225806 0.741935483870968"; depth 155 ; known ; non-synonymous GL193045.1 samtools variation 894873 894873 . . . alleles " C T"; frequencies " 0.73159509202454 0.26840490797546"; depth 652 ; unknown ; synonymous GL193045.1 samtools variation 894924 894924 . . . alleles " C T"; frequencies " 0.741610738255034 0.258389261744966"; depth 894 ; unknown ; synonymous GL193045.1 samtools variation 898584 898584 . . . alleles " G A"; frequencies " 0.646186440677966 0.353813559322034"; depth 472 ; unknown ; non-synonymous GL193045.1 samtools variation 898793 898793 . . . alleles " G A"; frequencies " 0.709844559585492 0.290155440414508"; depth 579 ; unknown ; non-synonymous GL193045.1 samtools variation 901868 901868 . . . alleles " G A"; frequencies " 0.633663366336634 0.366336633663366"; depth 303 ; unknown ; non-synonymous GL193045.1 samtools variation 901915 901915 . . . alleles " T C"; frequencies " 0.656666666666667 0.343333333333333"; depth 300 ; unknown ; synonymous GL193045.1 samtools variation 902173 902173 . . . alleles " G A"; frequencies " 0.670025188916877 0.329974811083123"; depth 397 ; unknown ; synonymous GL193045.1 samtools variation 902310 902310 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193045.1 samtools variation 902608 902608 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193045.1 samtools variation 902665 902665 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193045.1 samtools variation 903500 903500 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193045.1 samtools variation 903506 903506 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193045.1 samtools variation 904234 904234 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL193045.1 samtools variation 904515 904515 . . . alleles " C T"; frequencies " 0.541666666666667 0.458333333333333"; depth 48 ; unknown ; N/A GL193045.1 samtools variation 906953 906953 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193045.1 samtools variation 907060 907060 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193045.1 samtools variation 907937 907937 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193045.1 samtools variation 908225 908225 . . . alleles " G A"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL193045.1 samtools variation 908235 908235 . . . alleles " C A"; frequencies " 0.384615384615385 0.615384615384615"; depth 39 ; unknown ; N/A GL193045.1 samtools variation 908414 908414 . . . alleles " C T"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL193045.1 samtools variation 908752 908752 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193045.1 samtools variation 908789 908789 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193045.1 samtools variation 910005 910005 . . . alleles " A G"; frequencies " 0.29553264604811 0.70446735395189"; depth 291 ; unknown ; N/A GL193045.1 samtools variation 910306 910306 . . . alleles " T G"; frequencies " 0.304703476482618 0.695296523517382"; depth 489 ; unknown ; N/A GL193045.1 samtools variation 910345 910345 . . . alleles " C T"; frequencies " 0.734513274336283 0.265486725663717"; depth 565 ; unknown ; N/A GL193045.1 samtools variation 911156 911156 . . . alleles " T C"; frequencies " 0.684782608695652 0.315217391304348"; depth 828 ; unknown ; N/A GL193045.1 samtools variation 911286 911286 . . . alleles " G C"; frequencies " 0.678678678678679 0.321321321321321"; depth 333 ; unknown ; N/A GL193045.1 samtools variation 911492 911492 . . . alleles " G T"; frequencies " 0.77264325323475 0.22735674676525"; depth 541 ; unknown ; N/A GL193045.1 samtools variation 911728 911728 . . . alleles " C T"; frequencies " 0.652747252747253 0.347252747252747"; depth 455 ; unknown ; N/A GL193045.1 samtools variation 911778 911778 . . . alleles " G A"; frequencies " 0.567685589519651 0.432314410480349"; depth 458 ; unknown ; N/A GL193045.1 samtools variation 912471 912471 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193045.1 samtools variation 912551 912551 . . . alleles " T C"; frequencies " 0.757575757575758 0.242424242424242"; depth 99 ; unknown ; N/A GL193045.1 samtools variation 912585 912585 . . . alleles " A G"; frequencies " 0.72972972972973 0.27027027027027"; depth 74 ; unknown ; N/A GL193045.1 samtools variation 912596 912596 . . . alleles " G T"; frequencies " 0.652777777777778 0.347222222222222"; depth 72 ; unknown ; N/A GL193045.1 samtools variation 913890 913890 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL193045.1 samtools variation 914102 914102 . . . alleles " C G"; frequencies " 0.703389830508475 0.296610169491525"; depth 118 ; unknown ; N/A GL193045.1 samtools variation 914202 914202 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193045.1 samtools variation 917810 917810 . . . alleles " C T"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL193045.1 samtools variation 920282 920282 . . . alleles " C G"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL193045.1 samtools variation 920485 920485 . . . alleles " G A"; frequencies " 0.732142857142857 0.267857142857143"; depth 56 ; unknown ; N/A GL193045.1 samtools variation 920875 920875 . . . alleles " T A"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL193045.1 samtools variation 929471 929471 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; synonymous GL193045.1 samtools variation 942248 942248 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; synonymous GL193045.1 samtools variation 942628 942628 . . . alleles " A C"; frequencies " 0.34375 0.65625"; depth 32 ; unknown ; non-synonymous GL193045.1 samtools variation 942705 942705 . . . alleles " T C"; frequencies " 0.56 0.44"; depth 25 ; unknown ; synonymous GL193045.1 samtools variation 942745 942745 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; non-synonymous GL193045.1 samtools variation 943530 943530 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; synonymous GL193045.1 samtools variation 943964 943964 . . . alleles " T C"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; unknown ; non-synonymous GL193045.1 samtools variation 945108 945108 . . . alleles " G A"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; unknown ; non-synonymous GL193045.1 samtools variation 945197 945197 . . . alleles " A G"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; unknown ; synonymous GL193045.1 samtools variation 945512 945512 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193045.1 samtools variation 945718 945718 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL193045.1 samtools variation 954918 954918 . . . alleles " T A"; frequencies " 0.672131147540984 0.327868852459016"; depth 61 ; unknown ; synonymous GL193045.1 samtools variation 967136 967136 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193045.1 samtools variation 971287 971287 . . . alleles " C A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193045.1 samtools variation 971750 971750 . . . alleles " G A"; frequencies " 0.673076923076923 0.326923076923077"; depth 52 ; unknown ; N/A GL193048.1 samtools variation 247817 247817 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; synonymous GL193048.1 samtools variation 383444 383444 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; non-synonymous GL193048.1 samtools variation 384372 384372 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; synonymous GL193048.1 samtools variation 1010306 1010306 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 63 ; unknown ; synonymous GL193048.1 samtools variation 1011248 1011248 . . . alleles " G A"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; synonymous GL193048.1 samtools variation 1020202 1020202 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193048.1 samtools variation 1020203 1020203 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193048.1 samtools variation 1021810 1021810 . . . alleles " C T"; frequencies " 0.696078431372549 0.303921568627451"; depth 102 ; unknown ; synonymous GL193048.1 samtools variation 1021923 1021923 . . . alleles " G T"; frequencies " 0.57516339869281 0.42483660130719"; depth 153 ; known ; N/A GL193048.1 samtools variation 1021943 1021943 . . . alleles " T C"; frequencies " 0.560509554140127 0.439490445859873"; depth 157 ; known ; N/A GL193048.1 samtools variation 1022035 1022035 . . . alleles " T C"; frequencies " 0.551724137931034 0.448275862068966"; depth 58 ; unknown ; N/A GL193048.1 samtools variation 1022081 1022081 . . . alleles " G A"; frequencies " 0.576271186440678 0.423728813559322"; depth 59 ; known ; N/A GL193048.1 samtools variation 1022971 1022971 . . . alleles " G T"; frequencies " 0.523809523809524 0.476190476190476"; depth 147 ; known ; N/A GL193048.1 samtools variation 1024493 1024493 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193048.1 samtools variation 1024621 1024621 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193048.1 samtools variation 1025081 1025081 . . . alleles " C G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL193048.1 samtools variation 1025802 1025802 . . . alleles " G A"; frequencies " 0.783861671469741 0.216138328530259"; depth 694 ; unknown ; non-synonymous GL193048.1 samtools variation 1025933 1025933 . . . alleles " G A"; frequencies " 0.538144329896907 0.461855670103093"; depth 970 ; known ; synonymous GL193048.1 samtools variation 1026503 1026503 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193048.1 samtools variation 1027114 1027114 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193048.1 samtools variation 1027424 1027424 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193048.1 samtools variation 1028764 1028764 . . . alleles " C G"; frequencies " 0.625 0.375"; depth 24 ; known ; N/A GL193048.1 samtools variation 1028838 1028838 . . . alleles " T G"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; known ; N/A GL193048.1 samtools variation 1030033 1030033 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL193048.1 samtools variation 1030385 1030385 . . . alleles " C G"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL193048.1 samtools variation 1030398 1030398 . . . alleles " A C"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; known ; N/A GL193049.1 samtools variation 413814 413814 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193049.1 samtools variation 429042 429042 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193049.1 samtools variation 430502 430502 . . . alleles " G A"; frequencies " 0.381679389312977 0.618320610687023"; depth 131 ; known ; N/A GL193049.1 samtools variation 437064 437064 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193049.1 samtools variation 439957 439957 . . . alleles " G A"; frequencies " 0.792517006802721 0.207482993197279"; depth 294 ; unknown ; non-synonymous GL193049.1 samtools variation 451770 451770 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193049.1 samtools variation 459650 459650 . . . alleles " G A"; frequencies " 0.28 0.72"; depth 25 ; unknown ; N/A GL193049.1 samtools variation 459886 459886 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193049.1 samtools variation 501059 501059 . . . alleles " G A"; frequencies " 0.212765957446809 0.787234042553192"; depth 47 ; unknown ; N/A GL193049.1 samtools variation 502808 502808 . . . alleles " C G"; frequencies " 0.214285714285714 0.785714285714286"; depth 126 ; unknown ; N/A GL193049.1 samtools variation 502823 502823 . . . alleles " G A"; frequencies " 0.214953271028037 0.785046728971963"; depth 107 ; unknown ; N/A GL193049.1 samtools variation 504050 504050 . . . alleles " C T"; frequencies " 0.28169014084507 0.71830985915493"; depth 71 ; unknown ; N/A GL193049.1 samtools variation 534079 534079 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; synonymous GL193049.1 samtools variation 535170 535170 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; synonymous GL193049.1 samtools variation 537998 537998 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 25 ; unknown ; non-synonymous GL193049.1 samtools variation 568897 568897 . . . alleles " C A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL193049.1 samtools variation 569075 569075 . . . alleles " C T"; frequencies " 0.458563535911602 0.541436464088398"; depth 181 ; unknown ; synonymous GL193049.1 samtools variation 576705 576705 . . . alleles " T C"; frequencies " 0.677130044843049 0.318385650224215"; depth 223 ; known ; N/A GL193049.1 samtools variation 585702 585702 . . . alleles " C A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193049.1 samtools variation 604182 604182 . . . alleles " G T"; frequencies " 0.774647887323944 0.225352112676056"; depth 71 ; unknown ; non-synonymous GL193049.1 samtools variation 604480 604480 . . . alleles " G A"; frequencies " 0.425 0.575"; depth 40 ; unknown ; non-synonymous GL193049.1 samtools variation 605337 605337 . . . alleles " T C"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL193049.1 samtools variation 619613 619613 . . . alleles " C T"; frequencies " 0.7981220657277 0.2018779342723"; depth 213 ; known ; N/A GL193049.1 samtools variation 619680 619680 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 189 ; known ; N/A GL193049.1 samtools variation 634107 634107 . . . alleles " G A"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL193049.1 samtools variation 675185 675185 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL193049.1 samtools variation 681438 681438 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; non-synonymous GL193049.1 samtools variation 681531 681531 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 20 ; unknown ; non-synonymous GL193049.1 samtools variation 686695 686695 . . . alleles " T G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193049.1 samtools variation 698080 698080 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193049.1 samtools variation 698708 698708 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL193049.1 samtools variation 701109 701109 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; synonymous GL193049.1 samtools variation 730577 730577 . . . alleles " T A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193049.1 samtools variation 732459 732459 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193049.1 samtools variation 744836 744836 . . . alleles " A C"; frequencies " 0.79136690647482 0.20863309352518"; depth 139 ; unknown ; synonymous GL193049.1 samtools variation 802699 802699 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193049.1 samtools variation 826411 826411 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193049.1 samtools variation 827940 827940 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL193049.1 samtools variation 829447 829447 . . . alleles " G C"; frequencies " 0.791044776119403 0.208955223880597"; depth 134 ; unknown ; N/A GL193049.1 samtools variation 829809 829809 . . . alleles " A C"; frequencies " 0.65 0.35"; depth 40 ; unknown ; N/A GL193049.1 samtools variation 829876 829876 . . . alleles " C T"; frequencies " 0.673267326732673 0.326732673267327"; depth 101 ; unknown ; N/A GL193049.1 samtools variation 905585 905585 . . . alleles " C A"; frequencies " 0.277777777777778 0.722222222222222"; depth 72 ; known ; non-synonymous GL193049.1 samtools variation 911536 911536 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL193049.1 samtools variation 912532 912532 . . . alleles " T C"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; known ; N/A GL193049.1 samtools variation 913008 913008 . . . alleles " C A"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; known ; N/A GL193049.1 samtools variation 913237 913237 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193049.1 samtools variation 916528 916528 . . . alleles " G C"; frequencies " 0.697368421052632 0.302631578947368"; depth 76 ; known ; N/A GL193049.1 samtools variation 916537 916537 . . . alleles " A C"; frequencies " 0.459770114942529 0.540229885057471"; depth 87 ; unknown ; N/A GL193049.1 samtools variation 917117 917117 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 26 ; known ; N/A GL193049.1 samtools variation 917626 917626 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 40 ; unknown ; N/A GL193049.1 samtools variation 925715 925715 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL193049.1 samtools variation 946266 946266 . . . alleles " A G"; frequencies " 0.71 0.29"; depth 200 ; unknown ; N/A GL193049.1 samtools variation 981783 981783 . . . alleles " C T"; frequencies " 0.366666666666667 0.633333333333333"; depth 90 ; known ; N/A GL193049.1 samtools variation 983196 983196 . . . alleles " G T"; frequencies " 0.673076923076923 0.326923076923077"; depth 312 ; known ; N/A GL193050.1 samtools variation 472562 472562 . . . alleles " A G"; frequencies " 0.678260869565217 0.321739130434783"; depth 230 ; unknown ; N/A GL193050.1 samtools variation 536820 536820 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193050.1 samtools variation 712897 712897 . . . alleles " A G"; frequencies " 0.242424242424242 0.757575757575758"; depth 33 ; known ; synonymous GL193051.1 samtools variation 221395 221395 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL193051.1 samtools variation 250398 250398 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL193051.1 samtools variation 300088 300088 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193051.1 samtools variation 316932 316932 . . . alleles " T C"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193051.1 samtools variation 317599 317599 . . . alleles " A G"; frequencies " 0.74468085106383 0.25531914893617"; depth 47 ; unknown ; N/A GL193051.1 samtools variation 425307 425307 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193051.1 samtools variation 475825 475825 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193052.1 samtools variation 35015 35015 . . . alleles " C T"; frequencies " 0.744186046511628 0.255813953488372"; depth 43 ; unknown ; N/A GL193052.1 samtools variation 35478 35478 . . . alleles " G A"; frequencies " 0.668604651162791 0.331395348837209"; depth 172 ; unknown ; N/A GL193052.1 samtools variation 37173 37173 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; unknown ; N/A GL193052.1 samtools variation 37263 37263 . . . alleles " C G"; frequencies " 0.661290322580645 0.338709677419355"; depth 62 ; unknown ; N/A GL193052.1 samtools variation 618608 618608 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193052.1 samtools variation 767349 767349 . . . alleles " T C"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL193052.1 samtools variation 800588 800588 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193052.1 samtools variation 800727 800727 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 40 ; known ; N/A GL193052.1 samtools variation 804032 804032 . . . alleles " A G"; frequencies " 0.292929292929293 0.707070707070707"; depth 198 ; known ; N/A GL193052.1 samtools variation 804113 804113 . . . alleles " T C"; frequencies " 0.675925925925926 0.324074074074074"; depth 108 ; known ; N/A GL193052.1 samtools variation 805301 805301 . . . alleles " C T"; frequencies " 0.580645161290323 0.419354838709677"; depth 62 ; known ; N/A GL193053.1 samtools variation 267042 267042 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL193053.1 samtools variation 284714 284714 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193054.1 samtools variation 572996 572996 . . . alleles " G A"; frequencies " 0.55045871559633 0.44954128440367"; depth 109 ; unknown ; N/A GL193054.1 samtools variation 573186 573186 . . . alleles " G A"; frequencies " 0.7125 0.2875"; depth 80 ; unknown ; N/A GL193054.1 samtools variation 574381 574381 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 70 ; unknown ; N/A GL193054.1 samtools variation 653518 653518 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193054.1 samtools variation 756351 756351 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193054.1 samtools variation 761037 761037 . . . alleles " T C"; frequencies " 0.339449541284404 0.660550458715596"; depth 327 ; known ; N/A GL193054.1 samtools variation 761923 761923 . . . alleles " G C"; frequencies " 0.693877551020408 0.306122448979592"; depth 49 ; known ; N/A GL193054.1 samtools variation 970090 970090 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193054.1 samtools variation 972316 972316 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193056.1 samtools variation 83651 83651 . . . alleles " A T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193056.1 samtools variation 90482 90482 . . . alleles " C T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; N/A GL193056.1 samtools variation 90865 90865 . . . alleles " G C"; frequencies " 0.468085106382979 0.531914893617021"; depth 47 ; known ; N/A GL193056.1 samtools variation 111741 111741 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 55 ; known ; N/A GL193056.1 samtools variation 212440 212440 . . . alleles " T A"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; non-synonymous GL193056.1 samtools variation 217098 217098 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 22 ; known ; synonymous GL193056.1 samtools variation 231541 231541 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL193056.1 samtools variation 231584 231584 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL193056.1 samtools variation 231681 231681 . . . alleles " G C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193056.1 samtools variation 232078 232078 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 42 ; unknown ; N/A GL193056.1 samtools variation 233697 233697 . . . alleles " A G"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL193056.1 samtools variation 233893 233893 . . . alleles " G A"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; N/A GL193056.1 samtools variation 512736 512736 . . . alleles " T C"; frequencies " 0.375117370892019 0.624882629107981"; depth 2130 ; unknown ; N/A GL193056.1 samtools variation 517847 517847 . . . alleles " C T"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL193056.1 samtools variation 518405 518405 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193057.1 samtools variation 113195 113195 . . . alleles " G T"; frequencies " 0.380952380952381 0.619047619047619"; depth 42 ; known ; N/A GL193057.1 samtools variation 114412 114412 . . . alleles " T G"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL193057.1 samtools variation 250981 250981 . . . alleles " A G"; frequencies " 0.342857142857143 0.657142857142857"; depth 35 ; known ; synonymous GL193057.1 samtools variation 251086 251086 . . . alleles " G A"; frequencies " 0.346153846153846 0.653846153846154"; depth 130 ; known ; synonymous GL193057.1 samtools variation 251299 251299 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 136 ; known ; synonymous GL193057.1 samtools variation 295641 295641 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 114 ; known ; synonymous GL193058.1 samtools variation 73282 73282 . . . alleles " G A"; frequencies " 0.212765957446809 0.787234042553192"; depth 188 ; known ; N/A GL193058.1 samtools variation 191171 191171 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL193058.1 samtools variation 236466 236466 . . . alleles " T C"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; known ; synonymous GL193058.1 samtools variation 236980 236980 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 136 ; known ; synonymous GL193058.1 samtools variation 288533 288533 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL193058.1 samtools variation 331929 331929 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL193058.1 samtools variation 336905 336905 . . . alleles " C A"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL193058.1 samtools variation 336958 336958 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL193058.1 samtools variation 360417 360417 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193058.1 samtools variation 373809 373809 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193058.1 samtools variation 387202 387202 . . . alleles " A G"; frequencies " 0.333333333333333 0.642857142857143"; depth 42 ; known ; N/A GL193058.1 samtools variation 389867 389867 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193058.1 samtools variation 389869 389869 . . . alleles " G T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193058.1 samtools variation 390930 390930 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193058.1 samtools variation 392323 392323 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193058.1 samtools variation 513783 513783 . . . alleles " G A"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; non-synonymous GL193058.1 samtools variation 543501 543501 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 63 ; known ; N/A GL193058.1 samtools variation 543658 543658 . . . alleles " A G"; frequencies " 0.351851851851852 0.648148148148148"; depth 54 ; known ; N/A GL193058.1 samtools variation 543756 543756 . . . alleles " G T"; frequencies " 0.525 0.475"; depth 40 ; known ; N/A GL193058.1 samtools variation 545272 545272 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193058.1 samtools variation 547939 547939 . . . alleles " C G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL193058.1 samtools variation 548092 548092 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193058.1 samtools variation 548479 548479 . . . alleles " C G"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; known ; N/A GL193058.1 samtools variation 548929 548929 . . . alleles " A G"; frequencies " 0.590163934426229 0.409836065573771"; depth 61 ; known ; N/A GL193058.1 samtools variation 549092 549092 . . . alleles " C T"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; known ; N/A GL193058.1 samtools variation 549640 549640 . . . alleles " A C"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL193058.1 samtools variation 549969 549969 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; known ; N/A GL193058.1 samtools variation 550291 550291 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; known ; N/A GL193060.1 samtools variation 9820 9820 . . . alleles " C T"; frequencies " 0.241379310344828 0.758620689655172"; depth 29 ; unknown ; N/A GL193060.1 samtools variation 14253 14253 . . . alleles " G A"; frequencies " 0.45 0.55"; depth 60 ; unknown ; N/A GL193060.1 samtools variation 15387 15387 . . . alleles " A G"; frequencies " 0.28125 0.71875"; depth 64 ; unknown ; N/A GL193060.1 samtools variation 19331 19331 . . . alleles " C G"; frequencies " 0.233333333333333 0.766666666666667"; depth 150 ; unknown ; non-synonymous GL193060.1 samtools variation 21020 21020 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193060.1 samtools variation 22708 22708 . . . alleles " C G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL193060.1 samtools variation 48457 48457 . . . alleles " T C"; frequencies " 0.557692307692308 0.442307692307692"; depth 52 ; known ; synonymous GL193060.1 samtools variation 65256 65256 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193060.1 samtools variation 77672 77672 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL193060.1 samtools variation 87099 87099 . . . alleles " A G"; frequencies " 0.288461538461538 0.711538461538462"; depth 52 ; unknown ; N/A GL193060.1 samtools variation 87122 87122 . . . alleles " T C"; frequencies " 0.340909090909091 0.659090909090909"; depth 44 ; unknown ; N/A GL193060.1 samtools variation 87232 87232 . . . alleles " C T"; frequencies " 0.670588235294118 0.329411764705882"; depth 85 ; known ; N/A GL193060.1 samtools variation 87374 87374 . . . alleles " T C"; frequencies " 0.358288770053476 0.641711229946524"; depth 187 ; unknown ; N/A GL193060.1 samtools variation 87482 87482 . . . alleles " C G"; frequencies " 0.216216216216216 0.783783783783784"; depth 148 ; unknown ; N/A GL193060.1 samtools variation 87846 87846 . . . alleles " G A"; frequencies " 0.675213675213675 0.324786324786325"; depth 117 ; unknown ; N/A GL193060.1 samtools variation 88144 88144 . . . alleles " C T"; frequencies " 0.699029126213592 0.300970873786408"; depth 103 ; known ; N/A GL193060.1 samtools variation 89406 89406 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL193060.1 samtools variation 93099 93099 . . . alleles " A C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193060.1 samtools variation 97558 97558 . . . alleles " C G"; frequencies " 0.403846153846154 0.596153846153846"; depth 52 ; unknown ; N/A GL193060.1 samtools variation 101263 101263 . . . alleles " G C"; frequencies " 0.286279683377309 0.713720316622691"; depth 758 ; unknown ; N/A GL193060.1 samtools variation 102214 102214 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193060.1 samtools variation 115473 115473 . . . alleles " G A"; frequencies " 0.290322580645161 0.708755760368664"; depth 1085 ; unknown ; synonymous GL193060.1 samtools variation 132350 132350 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL193060.1 samtools variation 133356 133356 . . . alleles " C T"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; unknown ; N/A GL193060.1 samtools variation 386226 386226 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193060.1 samtools variation 388573 388573 . . . alleles " T C"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; N/A GL193060.1 samtools variation 390328 390328 . . . alleles " C G"; frequencies " 0.455882352941176 0.544117647058823"; depth 136 ; unknown ; non-synonymous GL193060.1 samtools variation 395177 395177 . . . alleles " C T"; frequencies " 0.396739130434783 0.603260869565217"; depth 184 ; unknown ; N/A GL193060.1 samtools variation 396815 396815 . . . alleles " C T"; frequencies " 0.37410071942446 0.62589928057554"; depth 139 ; unknown ; synonymous GL193060.1 samtools variation 399631 399631 . . . alleles " T C"; frequencies " 0.657142857142857 0.342857142857143"; depth 140 ; unknown ; non-synonymous GL193060.1 samtools variation 421961 421961 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; non-synonymous GL193060.1 samtools variation 422035 422035 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; synonymous GL193060.1 samtools variation 422306 422306 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193060.1 samtools variation 423731 423731 . . . alleles " G A"; frequencies " 0.395348837209302 0.604651162790698"; depth 43 ; unknown ; N/A GL193060.1 samtools variation 424529 424529 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193060.1 samtools variation 535846 535846 . . . alleles " A G"; frequencies " 0.269406392694064 0.730593607305936"; depth 219 ; known ; synonymous GL193060.1 samtools variation 539891 539891 . . . alleles " C T"; frequencies " 0.528428093645485 0.471571906354515"; depth 299 ; unknown ; synonymous GL193060.1 samtools variation 629153 629153 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL193060.1 samtools variation 656912 656912 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 14 ; known ; non-synonymous GL193060.1 samtools variation 675189 675189 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 24 ; known ; N/A GL193060.1 samtools variation 675313 675313 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193060.1 samtools variation 706874 706874 . . . alleles " G C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193060.1 samtools variation 708576 708576 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193060.1 samtools variation 708687 708687 . . . alleles " T G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193060.1 samtools variation 768227 768227 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 92 ; known ; N/A GL193060.1 samtools variation 868984 868984 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 20 ; known ; non-synonymous GL193060.1 samtools variation 999614 999614 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL193060.1 samtools variation 1002500 1002500 . . . alleles " C T"; frequencies " 0.706122448979592 0.293877551020408"; depth 245 ; known ; synonymous GL193060.1 samtools variation 1004426 1004426 . . . alleles " C G"; frequencies " 0.790909090909091 0.209090909090909"; depth 110 ; known ; synonymous GL193060.1 samtools variation 1004473 1004473 . . . alleles " A G"; frequencies " 0.226666666666667 0.773333333333333"; depth 75 ; known ; non-synonymous GL193060.1 samtools variation 1004715 1004715 . . . alleles " C G"; frequencies " 0.280701754385965 0.719298245614035"; depth 57 ; known ; non-synonymous GL193060.1 samtools variation 1004728 1004728 . . . alleles " C G"; frequencies " 0.315789473684211 0.684210526315789"; depth 57 ; known ; non-synonymous GL193060.1 samtools variation 1005188 1005188 . . . alleles " A G"; frequencies " 0.364406779661017 0.635593220338983"; depth 118 ; known ; synonymous GL193060.1 samtools variation 1005216 1005216 . . . alleles " A G"; frequencies " 0.241379310344828 0.758620689655172"; depth 145 ; known ; non-synonymous GL193062.1 samtools variation 38021 38021 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL193062.1 samtools variation 45204 45204 . . . alleles " C T"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; known ; synonymous GL193062.1 samtools variation 50237 50237 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL193062.1 samtools variation 52472 52472 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL193062.1 samtools variation 52738 52738 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; N/A GL193062.1 samtools variation 53213 53213 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193062.1 samtools variation 60508 60508 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL193062.1 samtools variation 61021 61021 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193062.1 samtools variation 63858 63858 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL193062.1 samtools variation 63898 63898 . . . alleles " T C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; known ; N/A GL193062.1 samtools variation 97622 97622 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 85 ; unknown ; synonymous GL193062.1 samtools variation 106880 106880 . . . alleles " C G"; frequencies " 0.668831168831169 0.331168831168831"; depth 154 ; unknown ; N/A GL193062.1 samtools variation 118659 118659 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 58 ; unknown ; non-synonymous GL193062.1 samtools variation 309777 309777 . . . alleles " C T"; frequencies " 0.788235294117647 0.211764705882353"; depth 170 ; unknown ; synonymous GL193062.1 samtools variation 318851 318851 . . . alleles " C G"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL193062.1 samtools variation 364936 364936 . . . alleles " G T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193062.1 samtools variation 364953 364953 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193062.1 samtools variation 567754 567754 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; known ; N/A GL193062.1 samtools variation 568088 568088 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193062.1 samtools variation 569482 569482 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL193062.1 samtools variation 570526 570526 . . . alleles " G T"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL193062.1 samtools variation 623483 623483 . . . alleles " G C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; known ; N/A GL193062.1 samtools variation 628223 628223 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193062.1 samtools variation 628981 628981 . . . alleles " G A"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; N/A GL193062.1 samtools variation 630890 630890 . . . alleles " T G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193062.1 samtools variation 638263 638263 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193062.1 samtools variation 639023 639023 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193062.1 samtools variation 640810 640810 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193062.1 samtools variation 640913 640913 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193062.1 samtools variation 649876 649876 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL193062.1 samtools variation 650006 650006 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193062.1 samtools variation 650401 650401 . . . alleles " G C"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL193062.1 samtools variation 651718 651718 . . . alleles " G A"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL193062.1 samtools variation 653027 653027 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL193062.1 samtools variation 653510 653510 . . . alleles " C G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193062.1 samtools variation 653647 653647 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL193062.1 samtools variation 653769 653769 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193062.1 samtools variation 653967 653967 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL193062.1 samtools variation 654307 654307 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193062.1 samtools variation 654490 654490 . . . alleles " A G"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; N/A GL193062.1 samtools variation 654702 654702 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL193062.1 samtools variation 655125 655125 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 65 ; known ; N/A GL193062.1 samtools variation 655526 655526 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193062.1 samtools variation 656471 656471 . . . alleles " G A"; frequencies " 0.609375 0.390625"; depth 64 ; known ; N/A GL193062.1 samtools variation 656526 656526 . . . alleles " A G"; frequencies " 0.269230769230769 0.730769230769231"; depth 52 ; known ; N/A GL193062.1 samtools variation 656791 656791 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193062.1 samtools variation 657110 657110 . . . alleles " T C"; frequencies " 0.572139303482587 0.427860696517413"; depth 201 ; known ; synonymous GL193062.1 samtools variation 657313 657313 . . . alleles " A G"; frequencies " 0.598639455782313 0.401360544217687"; depth 147 ; unknown ; N/A GL193062.1 samtools variation 661275 661275 . . . alleles " C T"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; known ; N/A GL193062.1 samtools variation 662656 662656 . . . alleles " C G"; frequencies " 0.616666666666667 0.383333333333333"; depth 60 ; unknown ; N/A GL193062.1 samtools variation 663776 663776 . . . alleles " C T"; frequencies " 0.322259136212625 0.677740863787375"; depth 301 ; unknown ; synonymous GL193062.1 samtools variation 665237 665237 . . . alleles " A G"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; N/A GL193062.1 samtools variation 668218 668218 . . . alleles " G A"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL193062.1 samtools variation 668504 668504 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193062.1 samtools variation 668803 668803 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL193062.1 samtools variation 669255 669255 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 52 ; unknown ; N/A GL193062.1 samtools variation 669407 669407 . . . alleles " T C"; frequencies " 0.382978723404255 0.617021276595745"; depth 47 ; unknown ; N/A GL193062.1 samtools variation 669416 669416 . . . alleles " C T"; frequencies " 0.382978723404255 0.617021276595745"; depth 47 ; unknown ; N/A GL193062.1 samtools variation 671948 671948 . . . alleles " A G"; frequencies " 0.450592885375494 0.549407114624506"; depth 253 ; known ; synonymous GL193062.1 samtools variation 671987 671987 . . . alleles " C T"; frequencies " 0.459627329192547 0.53416149068323"; depth 161 ; unknown ; synonymous GL193062.1 samtools variation 673556 673556 . . . alleles " G A"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; N/A GL193062.1 samtools variation 673693 673693 . . . alleles " G A"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL193062.1 samtools variation 674127 674127 . . . alleles " A G"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; known ; N/A GL193062.1 samtools variation 674616 674616 . . . alleles " G A"; frequencies " 0.65625 0.34375"; depth 32 ; known ; N/A GL193062.1 samtools variation 674860 674860 . . . alleles " A C"; frequencies " 0.535714285714286 0.464285714285714"; depth 56 ; unknown ; N/A GL193062.1 samtools variation 674940 674940 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL193062.1 samtools variation 675408 675408 . . . alleles " C T"; frequencies " 0.551020408163265 0.448979591836735"; depth 49 ; unknown ; N/A GL193062.1 samtools variation 675427 675427 . . . alleles " T C"; frequencies " 0.509803921568627 0.490196078431373"; depth 51 ; known ; N/A GL193062.1 samtools variation 675436 675436 . . . alleles " G A"; frequencies " 0.551020408163265 0.448979591836735"; depth 49 ; unknown ; N/A GL193062.1 samtools variation 675783 675783 . . . alleles " C T"; frequencies " 0.575 0.425"; depth 40 ; unknown ; N/A GL193062.1 samtools variation 675917 675917 . . . alleles " C G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193062.1 samtools variation 676474 676474 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL193062.1 samtools variation 677128 677128 . . . alleles " T G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193062.1 samtools variation 747958 747958 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193062.1 samtools variation 898262 898262 . . . alleles " T C"; frequencies " 0.463768115942029 0.536231884057971"; depth 69 ; unknown ; synonymous GL193062.1 samtools variation 899839 899839 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193062.1 samtools variation 900091 900091 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL193062.1 samtools variation 903659 903659 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193062.1 samtools variation 906943 906943 . . . alleles " G A"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193062.1 samtools variation 907368 907368 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; known ; N/A GL193062.1 samtools variation 946441 946441 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL193062.1 samtools variation 951866 951866 . . . alleles " A C"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; unknown ; N/A GL193062.1 samtools variation 961469 961469 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193062.1 samtools variation 978372 978372 . . . alleles " G A"; frequencies " 0.795918367346939 0.204081632653061"; depth 49 ; known ; synonymous GL193062.1 samtools variation 992147 992147 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193062.1 samtools variation 993319 993319 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL193062.1 samtools variation 994549 994549 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193062.1 samtools variation 995397 995397 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 72 ; unknown ; N/A GL193062.1 samtools variation 997336 997336 . . . alleles " T C"; frequencies " 0.210526315789474 0.789473684210526"; depth 38 ; known ; N/A GL193062.1 samtools variation 998051 998051 . . . alleles " A C"; frequencies " 0.693877551020408 0.306122448979592"; depth 49 ; known ; N/A GL193062.1 samtools variation 998255 998255 . . . alleles " T C"; frequencies " 0.650684931506849 0.349315068493151"; depth 146 ; unknown ; N/A GL193063.1 samtools variation 133383 133383 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193063.1 samtools variation 182356 182356 . . . alleles " G C"; frequencies " 0.360824742268041 0.639175257731959"; depth 97 ; unknown ; N/A GL193063.1 samtools variation 301993 301993 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL193063.1 samtools variation 302021 302021 . . . alleles " A T"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL193063.1 samtools variation 549328 549328 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193063.1 samtools variation 550776 550776 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193063.1 samtools variation 628126 628126 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; synonymous GL193064.1 samtools variation 646866 646866 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; synonymous GL193064.1 samtools variation 747620 747620 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; synonymous GL193064.1 samtools variation 747667 747667 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; synonymous GL193064.1 samtools variation 778239 778239 . . . alleles " A C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193064.1 samtools variation 808732 808732 . . . alleles " C T"; frequencies " 0.431372549019608 0.568627450980392"; depth 51 ; unknown ; N/A GL193064.1 samtools variation 808873 808873 . . . alleles " C A"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL193064.1 samtools variation 809450 809450 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193064.1 samtools variation 810716 810716 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193064.1 samtools variation 814668 814668 . . . alleles " T G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL193064.1 samtools variation 821139 821139 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL193064.1 samtools variation 821831 821831 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193064.1 samtools variation 821889 821889 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL193064.1 samtools variation 822002 822002 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193064.1 samtools variation 823576 823576 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 25 ; known ; N/A GL193064.1 samtools variation 830481 830481 . . . alleles " T G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193064.1 samtools variation 841583 841583 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193064.1 samtools variation 850294 850294 . . . alleles " G T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL193064.1 samtools variation 853102 853102 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; N/A GL193064.1 samtools variation 865957 865957 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193064.1 samtools variation 866221 866221 . . . alleles " C T"; frequencies " 0.345454545454545 0.654545454545455"; depth 55 ; unknown ; N/A GL193064.1 samtools variation 866257 866257 . . . alleles " A T"; frequencies " 0.724137931034483 0.275862068965517"; depth 58 ; unknown ; N/A GL193064.1 samtools variation 867788 867788 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; N/A GL193064.1 samtools variation 868182 868182 . . . alleles " C A"; frequencies " 0.463414634146341 0.536585365853659"; depth 82 ; unknown ; N/A GL193064.1 samtools variation 868220 868220 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 84 ; unknown ; N/A GL193064.1 samtools variation 868312 868312 . . . alleles " T C"; frequencies " 0.595505617977528 0.404494382022472"; depth 89 ; unknown ; N/A GL193064.1 samtools variation 873577 873577 . . . alleles " A C"; frequencies " 0.351351351351351 0.648648648648649"; depth 37 ; unknown ; N/A GL193064.1 samtools variation 873663 873663 . . . alleles " A G"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL193064.1 samtools variation 873724 873724 . . . alleles " G A"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL193064.1 samtools variation 874216 874216 . . . alleles " C T"; frequencies " 0.542372881355932 0.457627118644068"; depth 59 ; unknown ; N/A GL193064.1 samtools variation 874315 874315 . . . alleles " C G"; frequencies " 0.455696202531646 0.544303797468354"; depth 79 ; unknown ; N/A GL193064.1 samtools variation 892736 892736 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 51 ; unknown ; N/A GL193064.1 samtools variation 893081 893081 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL193064.1 samtools variation 968946 968946 . . . alleles " C T"; frequencies " 0.632432432432432 0.367567567567568"; depth 370 ; unknown ; synonymous GL193064.1 samtools variation 982005 982005 . . . alleles " C T"; frequencies " 0.225352112676056 0.774647887323944"; depth 71 ; known ; N/A GL193064.1 samtools variation 982317 982317 . . . alleles " T C"; frequencies " 0.429280397022333 0.570719602977667"; depth 403 ; unknown ; N/A GL193065.1 samtools variation 368587 368587 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; non-synonymous GL193065.1 samtools variation 567750 567750 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 70 ; unknown ; synonymous GL193065.1 samtools variation 826660 826660 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; synonymous GL193067.1 samtools variation 2193 2193 . . . alleles " A C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193067.1 samtools variation 25568 25568 . . . alleles " A G"; frequencies " 0.238317757009346 0.761682242990654"; depth 856 ; known ; N/A GL193067.1 samtools variation 25574 25574 . . . alleles " T C"; frequencies " 0.225173210161663 0.774826789838337"; depth 866 ; known ; N/A GL193067.1 samtools variation 25625 25625 . . . alleles " T C"; frequencies " 0.257686676427526 0.742313323572474"; depth 683 ; known ; N/A GL193067.1 samtools variation 25745 25745 . . . alleles " G A"; frequencies " 0.797587131367292 0.202412868632708"; depth 746 ; known ; N/A GL193067.1 samtools variation 26817 26817 . . . alleles " G A"; frequencies " 0.693548387096774 0.306451612903226"; depth 186 ; known ; N/A GL193067.1 samtools variation 29013 29013 . . . alleles " A G"; frequencies " 0.207792207792208 0.792207792207792"; depth 693 ; known ; non-synonymous GL193067.1 samtools variation 29486 29486 . . . alleles " G T"; frequencies " 0.30188679245283 0.69811320754717"; depth 53 ; known ; N/A GL193067.1 samtools variation 32041 32041 . . . alleles " C A"; frequencies " 0.447154471544715 0.544715447154472"; depth 123 ; unknown ; N/A GL193067.1 samtools variation 33186 33186 . . . alleles " T A"; frequencies " 0.657342657342657 0.342657342657343"; depth 143 ; known ; N/A GL193067.1 samtools variation 33250 33250 . . . alleles " C T"; frequencies " 0.238297872340426 0.761702127659574"; depth 235 ; unknown ; N/A GL193067.1 samtools variation 33251 33251 . . . alleles " A G"; frequencies " 0.241525423728814 0.758474576271186"; depth 236 ; unknown ; N/A GL193067.1 samtools variation 33603 33603 . . . alleles " A G"; frequencies " 0.293532338308458 0.706467661691542"; depth 201 ; known ; N/A GL193067.1 samtools variation 33713 33713 . . . alleles " G A"; frequencies " 0.281437125748503 0.718562874251497"; depth 167 ; known ; N/A GL193067.1 samtools variation 33765 33765 . . . alleles " G A"; frequencies " 0.225 0.775"; depth 80 ; known ; N/A GL193067.1 samtools variation 33901 33901 . . . alleles " T C"; frequencies " 0.216216216216216 0.783783783783784"; depth 74 ; known ; N/A GL193067.1 samtools variation 34294 34294 . . . alleles " A G"; frequencies " 0.456521739130435 0.543478260869565"; depth 92 ; known ; N/A GL193067.1 samtools variation 35341 35341 . . . alleles " A G"; frequencies " 0.338709677419355 0.661290322580645"; depth 310 ; known ; synonymous GL193067.1 samtools variation 35390 35390 . . . alleles " T C"; frequencies " 0.265765765765766 0.734234234234234"; depth 444 ; known ; synonymous GL193067.1 samtools variation 35564 35564 . . . alleles " G A"; frequencies " 0.266416510318949 0.733583489681051"; depth 533 ; known ; synonymous GL193067.1 samtools variation 35582 35582 . . . alleles " G A"; frequencies " 0.22093023255814 0.779069767441861"; depth 344 ; known ; synonymous GL193067.1 samtools variation 35693 35693 . . . alleles " C T"; frequencies " 0.77991452991453 0.22008547008547"; depth 468 ; known ; synonymous GL193067.1 samtools variation 39936 39936 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 36 ; known ; N/A GL193067.1 samtools variation 85471 85471 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193067.1 samtools variation 93480 93480 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193067.1 samtools variation 121026 121026 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL193067.1 samtools variation 129120 129120 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193067.1 samtools variation 245417 245417 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193067.1 samtools variation 245432 245432 . . . alleles " G C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193067.1 samtools variation 352195 352195 . . . alleles " C T"; frequencies " 0.371428571428571 0.628571428571429"; depth 35 ; unknown ; non-synonymous GL193067.1 samtools variation 354041 354041 . . . alleles " A G"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL193067.1 samtools variation 355144 355144 . . . alleles " A G"; frequencies " 0.277777777777778 0.722222222222222"; depth 54 ; unknown ; N/A GL193067.1 samtools variation 356314 356314 . . . alleles " T C"; frequencies " 0.404761904761905 0.595238095238095"; depth 42 ; unknown ; N/A GL193067.1 samtools variation 365173 365173 . . . alleles " G A"; frequencies " 0.413333333333333 0.586666666666667"; depth 150 ; known ; synonymous GL193067.1 samtools variation 369845 369845 . . . alleles " A C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193067.1 samtools variation 400468 400468 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; synonymous GL193067.1 samtools variation 404908 404908 . . . alleles " G T"; frequencies " 0.652173913043478 0.347826086956522"; depth 92 ; unknown ; synonymous GL193067.1 samtools variation 529329 529329 . . . alleles " G A"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL193067.1 samtools variation 608333 608333 . . . alleles " A C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; non-synonymous GL193067.1 samtools variation 642009 642009 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193067.1 samtools variation 645880 645880 . . . alleles " G A"; frequencies " 0.710144927536232 0.289855072463768"; depth 207 ; unknown ; non-synonymous GL193067.1 samtools variation 653859 653859 . . . alleles " T G"; frequencies " 0.707317073170732 0.292682926829268"; depth 123 ; unknown ; non-synonymous GL193067.1 samtools variation 810949 810949 . . . alleles " T C"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; known ; synonymous GL193067.1 samtools variation 813245 813245 . . . alleles " T A"; frequencies " 0.292682926829268 0.707317073170732"; depth 82 ; unknown ; synonymous GL193067.1 samtools variation 814516 814516 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193067.1 samtools variation 815777 815777 . . . alleles " G T"; frequencies " 0.737704918032787 0.262295081967213"; depth 61 ; known ; synonymous GL193067.1 samtools variation 826801 826801 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; known ; N/A GL193067.1 samtools variation 826816 826816 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193067.1 samtools variation 826824 826824 . . . alleles " C G"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL193067.1 samtools variation 827013 827013 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193067.1 samtools variation 827211 827211 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; N/A GL193067.1 samtools variation 828305 828305 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193067.1 samtools variation 829110 829110 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; known ; N/A GL193067.1 samtools variation 833031 833031 . . . alleles " T C"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL193067.1 samtools variation 836638 836638 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193067.1 samtools variation 881542 881542 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193069.1 samtools variation 41885 41885 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193069.1 samtools variation 86887 86887 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL193069.1 samtools variation 94503 94503 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL193069.1 samtools variation 100731 100731 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193069.1 samtools variation 100804 100804 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193069.1 samtools variation 102360 102360 . . . alleles " G A"; frequencies " 0.462962962962963 0.537037037037037"; depth 54 ; unknown ; N/A GL193069.1 samtools variation 102883 102883 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 40 ; unknown ; N/A GL193069.1 samtools variation 103422 103422 . . . alleles " G A"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL193069.1 samtools variation 106357 106357 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193069.1 samtools variation 109204 109204 . . . alleles " C A"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL193069.1 samtools variation 110328 110328 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193069.1 samtools variation 112505 112505 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193069.1 samtools variation 115249 115249 . . . alleles " A C"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL193069.1 samtools variation 115262 115262 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193069.1 samtools variation 118381 118381 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; synonymous GL193069.1 samtools variation 131180 131180 . . . alleles " A G"; frequencies " 0.507246376811594 0.492753623188406"; depth 69 ; unknown ; synonymous GL193069.1 samtools variation 141073 141073 . . . alleles " C T"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; unknown ; synonymous GL193069.1 samtools variation 141734 141734 . . . alleles " G A"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; unknown ; synonymous GL193069.1 samtools variation 141780 141780 . . . alleles " G A"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; non-synonymous GL193069.1 samtools variation 323778 323778 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; non-synonymous GL193069.1 samtools variation 325154 325154 . . . alleles " G C"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; non-synonymous GL193069.1 samtools variation 325443 325443 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; non-synonymous GL193069.1 samtools variation 338309 338309 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; synonymous GL193069.1 samtools variation 435006 435006 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193069.1 samtools variation 435153 435153 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL193069.1 samtools variation 435268 435268 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL193069.1 samtools variation 435910 435910 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193069.1 samtools variation 435954 435954 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193069.1 samtools variation 436413 436413 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL193069.1 samtools variation 827079 827079 . . . alleles " G A"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; unknown ; N/A GL193069.1 samtools variation 827125 827125 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; unknown ; N/A GL193069.1 samtools variation 827352 827352 . . . alleles " A G"; frequencies " 0.647435897435897 0.352564102564103"; depth 156 ; unknown ; N/A GL193069.1 samtools variation 832539 832539 . . . alleles " T G"; frequencies " 0.609756097560976 0.390243902439024"; depth 41 ; unknown ; N/A GL193071.1 samtools variation 647162 647162 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193071.1 samtools variation 651173 651173 . . . alleles " T C"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; N/A GL193071.1 samtools variation 651335 651335 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; known ; synonymous GL193071.1 samtools variation 665683 665683 . . . alleles " C T"; frequencies " 0.481481481481481 0.518518518518518"; depth 108 ; unknown ; N/A GL193071.1 samtools variation 667483 667483 . . . alleles " G A"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; known ; N/A GL193071.1 samtools variation 667988 667988 . . . alleles " A T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL193071.1 samtools variation 668168 668168 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 34 ; known ; N/A GL193071.1 samtools variation 671147 671147 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193071.1 samtools variation 672078 672078 . . . alleles " C A"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL193071.1 samtools variation 698030 698030 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193071.1 samtools variation 698041 698041 . . . alleles " T A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193071.1 samtools variation 698452 698452 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193071.1 samtools variation 698581 698581 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193071.1 samtools variation 699860 699860 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193071.1 samtools variation 709141 709141 . . . alleles " T C"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; N/A GL193071.1 samtools variation 710217 710217 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL193071.1 samtools variation 714998 714998 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL193071.1 samtools variation 717221 717221 . . . alleles " C T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL193071.1 samtools variation 721085 721085 . . . alleles " G T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193071.1 samtools variation 740487 740487 . . . alleles " C T"; frequencies " 0.726388888888889 0.273611111111111"; depth 720 ; unknown ; synonymous GL193071.1 samtools variation 742236 742236 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193071.1 samtools variation 742251 742251 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193071.1 samtools variation 744260 744260 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193071.1 samtools variation 744366 744366 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193071.1 samtools variation 749047 749047 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193071.1 samtools variation 749763 749763 . . . alleles " T A"; frequencies " 0.782945736434108 0.217054263565891"; depth 129 ; unknown ; N/A GL193071.1 samtools variation 751070 751070 . . . alleles " T C"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; N/A GL193071.1 samtools variation 752315 752315 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193071.1 samtools variation 753034 753034 . . . alleles " T C"; frequencies " 0.717171717171717 0.282828282828283"; depth 99 ; unknown ; N/A GL193071.1 samtools variation 753186 753186 . . . alleles " G A"; frequencies " 0.672727272727273 0.327272727272727"; depth 55 ; unknown ; N/A GL193071.1 samtools variation 754899 754899 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL193071.1 samtools variation 755711 755711 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 30 ; known ; N/A GL193071.1 samtools variation 756135 756135 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193071.1 samtools variation 756233 756233 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193071.1 samtools variation 763105 763105 . . . alleles " C T"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193071.1 samtools variation 763380 763380 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193071.1 samtools variation 763481 763481 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193071.1 samtools variation 764197 764197 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193071.1 samtools variation 764421 764421 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193071.1 samtools variation 769919 769919 . . . alleles " T A"; frequencies " 0.791666666666667 0.208333333333333"; depth 360 ; unknown ; N/A GL193071.1 samtools variation 770250 770250 . . . alleles " C T"; frequencies " 0.786666666666667 0.213333333333333"; depth 300 ; unknown ; N/A GL193071.1 samtools variation 770636 770636 . . . alleles " T A"; frequencies " 0.738636363636364 0.261363636363636"; depth 176 ; unknown ; N/A GL193071.1 samtools variation 770887 770887 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 298 ; known ; N/A GL193071.1 samtools variation 771796 771796 . . . alleles " T A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL193072.1 samtools variation 71676 71676 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; non-synonymous GL193072.1 samtools variation 71686 71686 . . . alleles " G C"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; non-synonymous GL193072.1 samtools variation 110759 110759 . . . alleles " A G"; frequencies " 0.45045045045045 0.54954954954955"; depth 222 ; known ; N/A GL193072.1 samtools variation 111119 111119 . . . alleles " G A"; frequencies " 0.794392523364486 0.205607476635514"; depth 107 ; unknown ; N/A GL193072.1 samtools variation 111164 111164 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 115 ; unknown ; N/A GL193072.1 samtools variation 111588 111588 . . . alleles " G A"; frequencies " 0.797752808988764 0.202247191011236"; depth 89 ; unknown ; N/A GL193072.1 samtools variation 111800 111800 . . . alleles " C T"; frequencies " 0.742857142857143 0.257142857142857"; depth 105 ; unknown ; N/A GL193072.1 samtools variation 111838 111838 . . . alleles " G T"; frequencies " 0.707317073170732 0.292682926829268"; depth 123 ; unknown ; N/A GL193072.1 samtools variation 117186 117186 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; known ; N/A GL193072.1 samtools variation 117343 117343 . . . alleles " C A"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL193072.1 samtools variation 118066 118066 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 68 ; unknown ; N/A GL193072.1 samtools variation 118551 118551 . . . alleles " G C"; frequencies " 0.779411764705882 0.220588235294118"; depth 68 ; unknown ; N/A GL193072.1 samtools variation 118700 118700 . . . alleles " C A"; frequencies " 0.705882352941177 0.294117647058824"; depth 51 ; unknown ; N/A GL193072.1 samtools variation 119353 119353 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL193072.1 samtools variation 122880 122880 . . . alleles " A C"; frequencies " 0.510204081632653 0.489795918367347"; depth 49 ; unknown ; N/A GL193072.1 samtools variation 122965 122965 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL193072.1 samtools variation 130312 130312 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL193072.1 samtools variation 133866 133866 . . . alleles " G A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL193072.1 samtools variation 195649 195649 . . . alleles " A G"; frequencies " 0.489130434782609 0.510869565217391"; depth 92 ; known ; synonymous GL193072.1 samtools variation 226880 226880 . . . alleles " T C"; frequencies " 0.471428571428571 0.528571428571429"; depth 70 ; known ; N/A GL193072.1 samtools variation 668635 668635 . . . alleles " C T"; frequencies " 0.646464646464647 0.353535353535354"; depth 99 ; unknown ; synonymous GL193073.1 samtools variation 281607 281607 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; known ; N/A GL193073.1 samtools variation 302582 302582 . . . alleles " C T"; frequencies " 0.523809523809524 0.476190476190476"; depth 63 ; unknown ; N/A GL193073.1 samtools variation 303466 303466 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 60 ; unknown ; N/A GL193073.1 samtools variation 304649 304649 . . . alleles " G A"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; unknown ; N/A GL193073.1 samtools variation 305381 305381 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193073.1 samtools variation 306402 306402 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL193073.1 samtools variation 662346 662346 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193073.1 samtools variation 662377 662377 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193073.1 samtools variation 664337 664337 . . . alleles " G A"; frequencies " 0.46875 0.53125"; depth 64 ; unknown ; N/A GL193074.1 samtools variation 497343 497343 . . . alleles " T C"; frequencies " 0.227272727272727 0.772727272727273"; depth 44 ; known ; non-synonymous GL193074.1 samtools variation 855717 855717 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; known ; non-synonymous GL193074.1 samtools variation 879327 879327 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL193074.1 samtools variation 990295 990295 . . . alleles " T C"; frequencies " 0.653521126760563 0.346478873239437"; depth 355 ; known ; N/A GL193074.1 samtools variation 990316 990316 . . . alleles " A G"; frequencies " 0.642352941176471 0.357647058823529"; depth 425 ; unknown ; N/A GL193075.1 samtools variation 68251 68251 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 25 ; unknown ; non-synonymous GL193075.1 samtools variation 108388 108388 . . . alleles " C T"; frequencies " 0.305555555555556 0.694444444444444"; depth 36 ; unknown ; synonymous GL193075.1 samtools variation 109321 109321 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193075.1 samtools variation 112452 112452 . . . alleles " G T"; frequencies " 0.294117647058824 0.705882352941177"; depth 68 ; unknown ; non-synonymous GL193075.1 samtools variation 112679 112679 . . . alleles " A C"; frequencies " 0.78125 0.21875"; depth 64 ; unknown ; synonymous GL193075.1 samtools variation 114435 114435 . . . alleles " T C"; frequencies " 0.267605633802817 0.732394366197183"; depth 71 ; unknown ; N/A GL193075.1 samtools variation 114601 114601 . . . alleles " A G"; frequencies " 0.26 0.74"; depth 100 ; unknown ; N/A GL193075.1 samtools variation 116183 116183 . . . alleles " T C"; frequencies " 0.263157894736842 0.736842105263158"; depth 95 ; unknown ; N/A GL193075.1 samtools variation 116266 116266 . . . alleles " T C"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; unknown ; N/A GL193075.1 samtools variation 116279 116279 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 40 ; unknown ; N/A GL193075.1 samtools variation 129453 129453 . . . alleles " G C"; frequencies " 0.210084033613445 0.789915966386555"; depth 119 ; unknown ; N/A GL193075.1 samtools variation 135272 135272 . . . alleles " C T"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; non-synonymous GL193075.1 samtools variation 446335 446335 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 91 ; unknown ; N/A GL193075.1 samtools variation 457913 457913 . . . alleles " G T"; frequencies " 0.473684210526316 0.526315789473684"; depth 95 ; unknown ; synonymous GL193075.1 samtools variation 467650 467650 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; unknown ; synonymous GL193075.1 samtools variation 537384 537384 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; unknown ; synonymous GL193075.1 samtools variation 540544 540544 . . . alleles " C T"; frequencies " 0.783783783783784 0.216216216216216"; depth 74 ; unknown ; synonymous GL193075.1 samtools variation 551644 551644 . . . alleles " A G"; frequencies " 0.751937984496124 0.248062015503876"; depth 645 ; unknown ; N/A GL193075.1 samtools variation 551698 551698 . . . alleles " A G"; frequencies " 0.201203783319003 0.798796216680997"; depth 1163 ; known ; N/A GL193075.1 samtools variation 551995 551995 . . . alleles " C G"; frequencies " 0.378815080789946 0.621184919210054"; depth 557 ; unknown ; N/A GL193075.1 samtools variation 552874 552874 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193075.1 samtools variation 553408 553408 . . . alleles " T C"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; N/A GL193075.1 samtools variation 554212 554212 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL193075.1 samtools variation 555578 555578 . . . alleles " A G"; frequencies " 0.365384615384615 0.634615384615385"; depth 52 ; unknown ; N/A GL193075.1 samtools variation 562712 562712 . . . alleles " C T"; frequencies " 0.673321234119782 0.326678765880218"; depth 551 ; unknown ; synonymous GL193075.1 samtools variation 563652 563652 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193075.1 samtools variation 577625 577625 . . . alleles " C T"; frequencies " 0.732824427480916 0.267175572519084"; depth 262 ; unknown ; non-synonymous GL193075.1 samtools variation 577755 577755 . . . alleles " A C"; frequencies " 0.323394495412844 0.676605504587156"; depth 436 ; unknown ; synonymous GL193075.1 samtools variation 580206 580206 . . . alleles " C T"; frequencies " 0.702928870292887 0.297071129707113"; depth 239 ; unknown ; synonymous GL193075.1 samtools variation 580684 580684 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; non-synonymous GL193075.1 samtools variation 580701 580701 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; synonymous GL193075.1 samtools variation 581075 581075 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 84 ; unknown ; synonymous GL193075.1 samtools variation 581089 581089 . . . alleles " A G"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; unknown ; non-synonymous GL193075.1 samtools variation 621113 621113 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; synonymous GL193075.1 samtools variation 993789 993789 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 63 ; unknown ; N/A GL193076.1 samtools variation 1192 1192 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193076.1 samtools variation 12513 12513 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193076.1 samtools variation 19385 19385 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193076.1 samtools variation 25782 25782 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 286 ; known ; synonymous GL193076.1 samtools variation 25923 25923 . . . alleles " G A"; frequencies " 0.350785340314136 0.649214659685864"; depth 191 ; known ; synonymous GL193076.1 samtools variation 26313 26313 . . . alleles " A G"; frequencies " 0.370967741935484 0.629032258064516"; depth 186 ; known ; synonymous GL193076.1 samtools variation 26397 26397 . . . alleles " A G"; frequencies " 0.703703703703704 0.296296296296296"; depth 189 ; known ; synonymous GL193076.1 samtools variation 109702 109702 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 90 ; unknown ; non-synonymous GL193076.1 samtools variation 352801 352801 . . . alleles " G A"; frequencies " 0.581395348837209 0.418604651162791"; depth 43 ; unknown ; N/A GL193076.1 samtools variation 353371 353371 . . . alleles " C A"; frequencies " 0.617021276595745 0.382978723404255"; depth 47 ; unknown ; N/A GL193076.1 samtools variation 375765 375765 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193076.1 samtools variation 378100 378100 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193076.1 samtools variation 378106 378106 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193076.1 samtools variation 594277 594277 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 42 ; unknown ; N/A GL193076.1 samtools variation 640646 640646 . . . alleles " T C"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL193076.1 samtools variation 649358 649358 . . . alleles " A T"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; known ; N/A GL193076.1 samtools variation 658506 658506 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL193076.1 samtools variation 662950 662950 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 30 ; known ; N/A GL193076.1 samtools variation 664405 664405 . . . alleles " T A"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; known ; N/A GL193076.1 samtools variation 665906 665906 . . . alleles " T C"; frequencies " 0.409836065573771 0.590163934426229"; depth 61 ; unknown ; N/A GL193076.1 samtools variation 863774 863774 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193077.1 samtools variation 307757 307757 . . . alleles " T A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193077.1 samtools variation 321623 321623 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL193077.1 samtools variation 499277 499277 . . . alleles " T G"; frequencies " 0.240740740740741 0.759259259259259"; depth 54 ; known ; N/A GL193077.1 samtools variation 500529 500529 . . . alleles " G C"; frequencies " 0.338235294117647 0.661764705882353"; depth 68 ; unknown ; N/A GL193077.1 samtools variation 507728 507728 . . . alleles " C G"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL193077.1 samtools variation 528892 528892 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193077.1 samtools variation 535166 535166 . . . alleles " C T"; frequencies " 0.76056338028169 0.23943661971831"; depth 284 ; unknown ; synonymous GL193077.1 samtools variation 620541 620541 . . . alleles " T G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; synonymous GL193077.1 samtools variation 764004 764004 . . . alleles " C T"; frequencies " 0.68 0.32"; depth 25 ; known ; synonymous GL193077.1 samtools variation 774484 774484 . . . alleles " C T"; frequencies " 0.297297297297297 0.702702702702703"; depth 37 ; known ; synonymous GL193077.1 samtools variation 774562 774562 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; synonymous GL193077.1 samtools variation 789998 789998 . . . alleles " T G"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; N/A GL193077.1 samtools variation 803206 803206 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193077.1 samtools variation 803229 803229 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193077.1 samtools variation 803298 803298 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193077.1 samtools variation 803808 803808 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL193077.1 samtools variation 843585 843585 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193077.1 samtools variation 844997 844997 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193077.1 samtools variation 845989 845989 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193077.1 samtools variation 846795 846795 . . . alleles " A C"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL193077.1 samtools variation 846876 846876 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL193077.1 samtools variation 847705 847705 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL193077.1 samtools variation 917140 917140 . . . alleles " C T"; frequencies " 0.730337078651685 0.269662921348315"; depth 89 ; unknown ; N/A GL193077.1 samtools variation 934297 934297 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193077.1 samtools variation 935272 935272 . . . alleles " G A"; frequencies " 0.74468085106383 0.25531914893617"; depth 47 ; unknown ; N/A GL193077.1 samtools variation 936114 936114 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193077.1 samtools variation 936473 936473 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193077.1 samtools variation 945402 945402 . . . alleles " T C"; frequencies " 0.725490196078431 0.274509803921569"; depth 51 ; unknown ; N/A GL193077.1 samtools variation 946076 946076 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL193077.1 samtools variation 946502 946502 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193077.1 samtools variation 948683 948683 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193077.1 samtools variation 950224 950224 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL193077.1 samtools variation 950519 950519 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193077.1 samtools variation 950933 950933 . . . alleles " T G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193077.1 samtools variation 954622 954622 . . . alleles " G C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193077.1 samtools variation 960669 960669 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193077.1 samtools variation 964267 964267 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193078.1 samtools variation 280539 280539 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; known ; synonymous GL193078.1 samtools variation 300109 300109 . . . alleles " C T"; frequencies " 0.40625 0.59375"; depth 32 ; unknown ; synonymous GL193078.1 samtools variation 300287 300287 . . . alleles " G A"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL193078.1 samtools variation 301896 301896 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 75 ; unknown ; N/A GL193078.1 samtools variation 301972 301972 . . . alleles " G C"; frequencies " 0.404761904761905 0.595238095238095"; depth 42 ; unknown ; N/A GL193078.1 samtools variation 574787 574787 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193078.1 samtools variation 575057 575057 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193078.1 samtools variation 611884 611884 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193078.1 samtools variation 657634 657634 . . . alleles " C T"; frequencies " 0.659259259259259 0.340740740740741"; depth 135 ; unknown ; synonymous GL193078.1 samtools variation 659366 659366 . . . alleles " C T"; frequencies " 0.622857142857143 0.377142857142857"; depth 175 ; unknown ; N/A GL193078.1 samtools variation 659811 659811 . . . alleles " G A"; frequencies " 0.669421487603306 0.322314049586777"; depth 121 ; unknown ; N/A GL193078.1 samtools variation 660867 660867 . . . alleles " G A"; frequencies " 0.653846153846154 0.346153846153846"; depth 52 ; unknown ; N/A GL193078.1 samtools variation 660949 660949 . . . alleles " G A"; frequencies " 0.5 0.470588235294118"; depth 34 ; unknown ; N/A GL193078.1 samtools variation 666376 666376 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL193078.1 samtools variation 667484 667484 . . . alleles " T A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193078.1 samtools variation 671548 671548 . . . alleles " C A"; frequencies " 0.6375 0.3625"; depth 80 ; unknown ; N/A GL193078.1 samtools variation 671928 671928 . . . alleles " G T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193078.1 samtools variation 673079 673079 . . . alleles " C A"; frequencies " 0.473015873015873 0.526984126984127"; depth 315 ; unknown ; synonymous GL193078.1 samtools variation 673304 673304 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; unknown ; N/A GL193078.1 samtools variation 673354 673354 . . . alleles " C A"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL193078.1 samtools variation 673694 673694 . . . alleles " G A"; frequencies " 0.32258064516129 0.67741935483871"; depth 62 ; unknown ; N/A GL193078.1 samtools variation 673702 673702 . . . alleles " C T"; frequencies " 0.28 0.72"; depth 50 ; unknown ; N/A GL193078.1 samtools variation 673849 673849 . . . alleles " T C"; frequencies " 0.342105263157895 0.657894736842105"; depth 38 ; unknown ; N/A GL193078.1 samtools variation 674243 674243 . . . alleles " T C"; frequencies " 0.21875 0.78125"; depth 32 ; unknown ; N/A GL193078.1 samtools variation 674294 674294 . . . alleles " T C"; frequencies " 0.314814814814815 0.685185185185185"; depth 54 ; unknown ; N/A GL193078.1 samtools variation 674615 674615 . . . alleles " C T"; frequencies " 0.472222222222222 0.527777777777778"; depth 36 ; unknown ; N/A GL193078.1 samtools variation 674632 674632 . . . alleles " T C"; frequencies " 0.459459459459459 0.540540540540541"; depth 37 ; unknown ; N/A GL193078.1 samtools variation 674958 674958 . . . alleles " G A"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL193078.1 samtools variation 675207 675207 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193078.1 samtools variation 675594 675594 . . . alleles " C T"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL193078.1 samtools variation 678437 678437 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL193078.1 samtools variation 678664 678664 . . . alleles " G A"; frequencies " 0.28 0.72"; depth 25 ; unknown ; N/A GL193078.1 samtools variation 678706 678706 . . . alleles " T C"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL193078.1 samtools variation 678742 678742 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL193078.1 samtools variation 682414 682414 . . . alleles " C T"; frequencies " 0.272264631043257 0.727735368956743"; depth 393 ; unknown ; synonymous GL193078.1 samtools variation 719206 719206 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193078.1 samtools variation 724556 724556 . . . alleles " C T"; frequencies " 0.361607142857143 0.638392857142857"; depth 672 ; known ; N/A GL193078.1 samtools variation 725792 725792 . . . alleles " G A"; frequencies " 0.326086956521739 0.673913043478261"; depth 46 ; known ; N/A GL193078.1 samtools variation 726145 726145 . . . alleles " T G"; frequencies " 0.696428571428571 0.303571428571429"; depth 112 ; known ; N/A GL193078.1 samtools variation 726404 726404 . . . alleles " T C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193078.1 samtools variation 726430 726430 . . . alleles " A G"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL193078.1 samtools variation 726554 726554 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193078.1 samtools variation 726728 726728 . . . alleles " A G"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; known ; N/A GL193078.1 samtools variation 728242 728242 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL193078.1 samtools variation 729399 729399 . . . alleles " G C"; frequencies " 0.706896551724138 0.293103448275862"; depth 174 ; unknown ; N/A GL193078.1 samtools variation 998789 998789 . . . alleles " G A"; frequencies " 0.549180327868853 0.450819672131148"; depth 122 ; unknown ; N/A GL193078.1 samtools variation 999466 999466 . . . alleles " C T"; frequencies " 0.656521739130435 0.343478260869565"; depth 230 ; unknown ; N/A GL193078.1 samtools variation 999608 999608 . . . alleles " T G"; frequencies " 0.557692307692308 0.442307692307692"; depth 52 ; unknown ; N/A GL193078.1 samtools variation 999682 999682 . . . alleles " C T"; frequencies " 0.760869565217391 0.239130434782609"; depth 46 ; unknown ; N/A GL193078.1 samtools variation 999900 999900 . . . alleles " G A"; frequencies " 0.621794871794872 0.378205128205128"; depth 156 ; unknown ; N/A GL193079.1 samtools variation 307277 307277 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193080.1 samtools variation 128103 128103 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL193080.1 samtools variation 128239 128239 . . . alleles " G A"; frequencies " 0.315789473684211 0.684210526315789"; depth 57 ; known ; N/A GL193080.1 samtools variation 128709 128709 . . . alleles " G A"; frequencies " 0.622641509433962 0.377358490566038"; depth 53 ; unknown ; N/A GL193080.1 samtools variation 128871 128871 . . . alleles " C A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL193080.1 samtools variation 129215 129215 . . . alleles " G T"; frequencies " 0.568181818181818 0.431818181818182"; depth 44 ; known ; N/A GL193080.1 samtools variation 130048 130048 . . . alleles " T C"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; known ; N/A GL193080.1 samtools variation 133483 133483 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193080.1 samtools variation 152706 152706 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 40 ; unknown ; N/A GL193080.1 samtools variation 152713 152713 . . . alleles " T C"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; N/A GL193080.1 samtools variation 154952 154952 . . . alleles " G A"; frequencies " 0.763888888888889 0.236111111111111"; depth 72 ; unknown ; N/A GL193080.1 samtools variation 159555 159555 . . . alleles " A G"; frequencies " 0.741935483870968 0.258064516129032"; depth 62 ; unknown ; N/A GL193080.1 samtools variation 159729 159729 . . . alleles " C T"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; unknown ; N/A GL193080.1 samtools variation 159748 159748 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL193080.1 samtools variation 161867 161867 . . . alleles " G A"; frequencies " 0.40625 0.59375"; depth 32 ; known ; N/A GL193080.1 samtools variation 180080 180080 . . . alleles " T C"; frequencies " 0.602150537634409 0.397849462365591"; depth 93 ; unknown ; synonymous GL193080.1 samtools variation 181028 181028 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; non-synonymous GL193080.1 samtools variation 184492 184492 . . . alleles " T C"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; unknown ; non-synonymous GL193080.1 samtools variation 184532 184532 . . . alleles " C T"; frequencies " 0.575 0.425"; depth 40 ; unknown ; synonymous GL193080.1 samtools variation 194522 194522 . . . alleles " G A"; frequencies " 0.564516129032258 0.435483870967742"; depth 62 ; unknown ; synonymous GL193080.1 samtools variation 199279 199279 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; synonymous GL193080.1 samtools variation 274156 274156 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193080.1 samtools variation 279811 279811 . . . alleles " G C"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL193080.1 samtools variation 282542 282542 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; synonymous GL193080.1 samtools variation 293724 293724 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193080.1 samtools variation 294145 294145 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193080.1 samtools variation 294245 294245 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193080.1 samtools variation 363583 363583 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; synonymous GL193080.1 samtools variation 371689 371689 . . . alleles " C T"; frequencies " 0.566929133858268 0.433070866141732"; depth 127 ; unknown ; N/A GL193080.1 samtools variation 372248 372248 . . . alleles " T C"; frequencies " 0.542168674698795 0.457831325301205"; depth 83 ; unknown ; N/A GL193080.1 samtools variation 375364 375364 . . . alleles " C A"; frequencies " 0.541666666666667 0.458333333333333"; depth 48 ; unknown ; N/A GL193080.1 samtools variation 375910 375910 . . . alleles " C T"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL193080.1 samtools variation 410852 410852 . . . alleles " T G"; frequencies " 0.614035087719298 0.385964912280702"; depth 114 ; unknown ; synonymous GL193080.1 samtools variation 414705 414705 . . . alleles " T G"; frequencies " 0.626865671641791 0.373134328358209"; depth 67 ; unknown ; N/A GL193080.1 samtools variation 414917 414917 . . . alleles " G C"; frequencies " 0.612612612612613 0.387387387387387"; depth 333 ; unknown ; N/A GL193080.1 samtools variation 417999 417999 . . . alleles " G C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193080.1 samtools variation 418704 418704 . . . alleles " T C"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; N/A GL193080.1 samtools variation 419744 419744 . . . alleles " G A"; frequencies " 0.504347826086956 0.495652173913044"; depth 115 ; unknown ; synonymous GL193080.1 samtools variation 423541 423541 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193080.1 samtools variation 471844 471844 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL193080.1 samtools variation 515853 515853 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 77 ; known ; N/A GL193081.1 samtools variation 141892 141892 . . . alleles " A T"; frequencies " 0.753424657534247 0.246575342465753"; depth 146 ; unknown ; synonymous GL193081.1 samtools variation 144260 144260 . . . alleles " A C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL193081.1 samtools variation 155127 155127 . . . alleles " T C"; frequencies " 0.241935483870968 0.758064516129032"; depth 62 ; known ; N/A GL193081.1 samtools variation 193353 193353 . . . alleles " T G"; frequencies " 0.580246913580247 0.419753086419753"; depth 81 ; unknown ; N/A GL193081.1 samtools variation 197803 197803 . . . alleles " G C"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL193081.1 samtools variation 223543 223543 . . . alleles " C A"; frequencies " 0.737704918032787 0.262295081967213"; depth 61 ; known ; N/A GL193081.1 samtools variation 223620 223620 . . . alleles " G C"; frequencies " 0.784615384615385 0.215384615384615"; depth 65 ; known ; N/A GL193081.1 samtools variation 982595 982595 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL193081.1 samtools variation 996206 996206 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193082.1 samtools variation 153795 153795 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193082.1 samtools variation 394720 394720 . . . alleles " T C"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193082.1 samtools variation 395136 395136 . . . alleles " C A"; frequencies " 0.771186440677966 0.228813559322034"; depth 118 ; unknown ; N/A GL193082.1 samtools variation 420003 420003 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193082.1 samtools variation 423640 423640 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193082.1 samtools variation 576266 576266 . . . alleles " G A"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; non-synonymous GL193082.1 samtools variation 580157 580157 . . . alleles " G T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL193082.1 samtools variation 583645 583645 . . . alleles " G T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193082.1 samtools variation 845970 845970 . . . alleles " G T"; frequencies " 0.792682926829268 0.207317073170732"; depth 328 ; unknown ; N/A GL193082.1 samtools variation 846345 846345 . . . alleles " T C"; frequencies " 0.784172661870504 0.215827338129496"; depth 139 ; unknown ; N/A GL193082.1 samtools variation 848011 848011 . . . alleles " T A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193082.1 samtools variation 852986 852986 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; known ; N/A GL193082.1 samtools variation 869744 869744 . . . alleles " G A"; frequencies " 0.764150943396226 0.235849056603774"; depth 212 ; known ; non-synonymous GL193083.1 samtools variation 416678 416678 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193083.1 samtools variation 419048 419048 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193083.1 samtools variation 477303 477303 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193083.1 samtools variation 527524 527524 . . . alleles " G C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193083.1 samtools variation 530565 530565 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193083.1 samtools variation 530765 530765 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193083.1 samtools variation 533103 533103 . . . alleles " G A"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; known ; N/A GL193083.1 samtools variation 533354 533354 . . . alleles " G A"; frequencies " 0.651785714285714 0.348214285714286"; depth 336 ; known ; N/A GL193083.1 samtools variation 534208 534208 . . . alleles " G A"; frequencies " 0.371747211895911 0.628252788104089"; depth 269 ; known ; N/A GL193083.1 samtools variation 534443 534443 . . . alleles " C T"; frequencies " 0.744186046511628 0.255813953488372"; depth 43 ; known ; N/A GL193083.1 samtools variation 534970 534970 . . . alleles " G A"; frequencies " 0.59375 0.40625"; depth 32 ; known ; N/A GL193083.1 samtools variation 535951 535951 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL193083.1 samtools variation 536111 536111 . . . alleles " C T"; frequencies " 0.78125 0.21875"; depth 32 ; known ; N/A GL193083.1 samtools variation 536656 536656 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193083.1 samtools variation 536687 536687 . . . alleles " C T"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL193083.1 samtools variation 536807 536807 . . . alleles " A G"; frequencies " 0.685897435897436 0.314102564102564"; depth 156 ; unknown ; N/A GL193083.1 samtools variation 536813 536813 . . . alleles " G A"; frequencies " 0.690789473684211 0.309210526315789"; depth 152 ; known ; N/A GL193083.1 samtools variation 537683 537683 . . . alleles " G T"; frequencies " 0.45 0.55"; depth 40 ; known ; N/A GL193083.1 samtools variation 538472 538472 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193083.1 samtools variation 538623 538623 . . . alleles " G C"; frequencies " 0.598360655737705 0.401639344262295"; depth 122 ; known ; N/A GL193083.1 samtools variation 539927 539927 . . . alleles " C T"; frequencies " 0.644067796610169 0.355932203389831"; depth 59 ; known ; N/A GL193083.1 samtools variation 540753 540753 . . . alleles " C T"; frequencies " 0.637931034482759 0.362068965517241"; depth 58 ; unknown ; N/A GL193083.1 samtools variation 540790 540790 . . . alleles " T G"; frequencies " 0.580645161290323 0.419354838709677"; depth 62 ; known ; N/A GL193083.1 samtools variation 540870 540870 . . . alleles " A G"; frequencies " 0.467741935483871 0.532258064516129"; depth 62 ; known ; N/A GL193083.1 samtools variation 540972 540972 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL193083.1 samtools variation 541514 541514 . . . alleles " C G"; frequencies " 0.574468085106383 0.425531914893617"; depth 47 ; known ; N/A GL193083.1 samtools variation 541546 541546 . . . alleles " T C"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; known ; N/A GL193084.1 samtools variation 21088 21088 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193084.1 samtools variation 53282 53282 . . . alleles " C T"; frequencies " 0.774725274725275 0.225274725274725"; depth 182 ; unknown ; non-synonymous GL193084.1 samtools variation 53352 53352 . . . alleles " G A"; frequencies " 0.634920634920635 0.365079365079365"; depth 63 ; unknown ; synonymous GL193084.1 samtools variation 57955 57955 . . . alleles " C T"; frequencies " 0.753968253968254 0.246031746031746"; depth 126 ; unknown ; non-synonymous GL193084.1 samtools variation 65635 65635 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193084.1 samtools variation 65724 65724 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193084.1 samtools variation 67671 67671 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL193084.1 samtools variation 67766 67766 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL193084.1 samtools variation 67813 67813 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193084.1 samtools variation 69310 69310 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193084.1 samtools variation 70585 70585 . . . alleles " A G"; frequencies " 0.44 0.56"; depth 200 ; unknown ; non-synonymous GL193084.1 samtools variation 230563 230563 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193084.1 samtools variation 246836 246836 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; non-synonymous GL193084.1 samtools variation 304704 304704 . . . alleles " C G"; frequencies " 0.288461538461538 0.711538461538462"; depth 52 ; known ; non-synonymous GL193084.1 samtools variation 304794 304794 . . . alleles " A G"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; known ; non-synonymous GL193084.1 samtools variation 304996 304996 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; non-synonymous GL193084.1 samtools variation 324622 324622 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193084.1 samtools variation 364958 364958 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193084.1 samtools variation 366122 366122 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL193084.1 samtools variation 569628 569628 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; synonymous GL193085.1 samtools variation 936686 936686 . . . alleles " T C"; frequencies " 0.418604651162791 0.581395348837209"; depth 129 ; known ; N/A GL193085.1 samtools variation 947994 947994 . . . alleles " C G"; frequencies " 0.660377358490566 0.339622641509434"; depth 159 ; known ; non-synonymous GL193085.1 samtools variation 960874 960874 . . . alleles " A T"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL193085.1 samtools variation 980288 980288 . . . alleles " G A"; frequencies " 0.716981132075472 0.283018867924528"; depth 53 ; known ; synonymous GL193085.1 samtools variation 995514 995514 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193086.1 samtools variation 893983 893983 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; unknown ; N/A GL193086.1 samtools variation 894304 894304 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL193086.1 samtools variation 894352 894352 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193086.1 samtools variation 947914 947914 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193087.1 samtools variation 144577 144577 . . . alleles " C G"; frequencies " 0.793168880455408 0.206831119544592"; depth 527 ; unknown ; non-synonymous GL193087.1 samtools variation 148056 148056 . . . alleles " C T"; frequencies " 0.492063492063492 0.507936507936508"; depth 63 ; unknown ; N/A GL193087.1 samtools variation 180156 180156 . . . alleles " A T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193087.1 samtools variation 180350 180350 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193087.1 samtools variation 189587 189587 . . . alleles " A G"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL193087.1 samtools variation 196892 196892 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 48 ; unknown ; N/A GL193087.1 samtools variation 197075 197075 . . . alleles " C T"; frequencies " 0.786885245901639 0.213114754098361"; depth 61 ; unknown ; N/A GL193087.1 samtools variation 197529 197529 . . . alleles " C G"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; N/A GL193087.1 samtools variation 225298 225298 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; unknown ; synonymous GL193087.1 samtools variation 240904 240904 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193087.1 samtools variation 248554 248554 . . . alleles " A G"; frequencies " 0.703125 0.296875"; depth 64 ; unknown ; N/A GL193087.1 samtools variation 249053 249053 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193087.1 samtools variation 253082 253082 . . . alleles " G T"; frequencies " 0.638157894736842 0.361842105263158"; depth 456 ; unknown ; non-synonymous GL193087.1 samtools variation 305452 305452 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193087.1 samtools variation 327707 327707 . . . alleles " C A"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; unknown ; N/A GL193087.1 samtools variation 327989 327989 . . . alleles " A G"; frequencies " 0.787610619469027 0.212389380530973"; depth 113 ; unknown ; N/A GL193087.1 samtools variation 327998 327998 . . . alleles " G A"; frequencies " 0.797872340425532 0.202127659574468"; depth 94 ; unknown ; N/A GL193087.1 samtools variation 328823 328823 . . . alleles " C G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193087.1 samtools variation 347099 347099 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193087.1 samtools variation 348583 348583 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193087.1 samtools variation 351803 351803 . . . alleles " G A"; frequencies " 0.354838709677419 0.645161290322581"; depth 155 ; unknown ; synonymous GL193087.1 samtools variation 353234 353234 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193087.1 samtools variation 358031 358031 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193087.1 samtools variation 370784 370784 . . . alleles " C T"; frequencies " 0.728915662650602 0.271084337349398"; depth 166 ; unknown ; synonymous GL193087.1 samtools variation 370803 370803 . . . alleles " G A"; frequencies " 0.565400843881857 0.434599156118143"; depth 237 ; unknown ; non-synonymous GL193087.1 samtools variation 370902 370902 . . . alleles " A G"; frequencies " 0.302469135802469 0.697530864197531"; depth 162 ; unknown ; non-synonymous GL193087.1 samtools variation 375976 375976 . . . alleles " G A"; frequencies " 0.798969072164949 0.201030927835052"; depth 194 ; unknown ; N/A GL193087.1 samtools variation 376028 376028 . . . alleles " A C"; frequencies " 0.515625 0.484375"; depth 128 ; unknown ; N/A GL193087.1 samtools variation 376030 376030 . . . alleles " C G"; frequencies " 0.507936507936508 0.492063492063492"; depth 126 ; unknown ; N/A GL193087.1 samtools variation 379616 379616 . . . alleles " T C"; frequencies " 0.570247933884298 0.429752066115702"; depth 121 ; known ; N/A GL193087.1 samtools variation 379636 379636 . . . alleles " G A"; frequencies " 0.675438596491228 0.324561403508772"; depth 114 ; known ; N/A GL193087.1 samtools variation 385440 385440 . . . alleles " G A"; frequencies " 0.634146341463415 0.365853658536585"; depth 82 ; unknown ; non-synonymous GL193087.1 samtools variation 385447 385447 . . . alleles " T G"; frequencies " 0.741176470588235 0.247058823529412"; depth 85 ; unknown ; non-synonymous GL193087.1 samtools variation 398673 398673 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193087.1 samtools variation 402610 402610 . . . alleles " G T"; frequencies " 0.551351351351351 0.448648648648649"; depth 185 ; unknown ; non-synonymous GL193087.1 samtools variation 406190 406190 . . . alleles " A G"; frequencies " 0.774193548387097 0.225806451612903"; depth 62 ; unknown ; N/A GL193087.1 samtools variation 406266 406266 . . . alleles " G C"; frequencies " 0.788235294117647 0.211764705882353"; depth 85 ; unknown ; N/A GL193087.1 samtools variation 406341 406341 . . . alleles " T G"; frequencies " 0.525179856115108 0.474820143884892"; depth 139 ; unknown ; N/A GL193087.1 samtools variation 406381 406381 . . . alleles " G A"; frequencies " 0.492753623188406 0.507246376811594"; depth 138 ; unknown ; N/A GL193087.1 samtools variation 406413 406413 . . . alleles " G A"; frequencies " 0.788990825688073 0.211009174311927"; depth 109 ; unknown ; N/A GL193087.1 samtools variation 407080 407080 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193087.1 samtools variation 407122 407122 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL193087.1 samtools variation 407323 407323 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; unknown ; N/A GL193087.1 samtools variation 407339 407339 . . . alleles " A G"; frequencies " 0.787234042553192 0.212765957446809"; depth 47 ; unknown ; N/A GL193087.1 samtools variation 407344 407344 . . . alleles " C A"; frequencies " 0.291666666666667 0.708333333333333"; depth 48 ; unknown ; N/A GL193087.1 samtools variation 407461 407461 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 75 ; unknown ; N/A GL193087.1 samtools variation 407627 407627 . . . alleles " G T"; frequencies " 0.461538461538462 0.512820512820513"; depth 39 ; known ; N/A GL193087.1 samtools variation 407658 407658 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL193087.1 samtools variation 407749 407749 . . . alleles " T C"; frequencies " 0.225 0.775"; depth 40 ; unknown ; N/A GL193087.1 samtools variation 408163 408163 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 63 ; unknown ; N/A GL193087.1 samtools variation 408310 408310 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193087.1 samtools variation 408513 408513 . . . alleles " T C"; frequencies " 0.432225063938619 0.562659846547315"; depth 391 ; unknown ; N/A GL193087.1 samtools variation 409465 409465 . . . alleles " C T"; frequencies " 0.620915032679739 0.379084967320261"; depth 306 ; unknown ; N/A GL193087.1 samtools variation 415902 415902 . . . alleles " T C"; frequencies " 0.240506329113924 0.759493670886076"; depth 79 ; unknown ; non-synonymous GL193087.1 samtools variation 424501 424501 . . . alleles " G T"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; known ; N/A GL193087.1 samtools variation 425314 425314 . . . alleles " G C"; frequencies " 0.569587628865979 0.430412371134021"; depth 776 ; known ; N/A GL193087.1 samtools variation 425344 425344 . . . alleles " T C"; frequencies " 0.664150943396226 0.335849056603774"; depth 530 ; unknown ; N/A GL193087.1 samtools variation 425521 425521 . . . alleles " T C"; frequencies " 0.314102564102564 0.685897435897436"; depth 156 ; known ; N/A GL193087.1 samtools variation 441761 441761 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193087.1 samtools variation 451391 451391 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193087.1 samtools variation 452876 452876 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193087.1 samtools variation 467212 467212 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL193087.1 samtools variation 473302 473302 . . . alleles " T C"; frequencies " 0.517175572519084 0.481870229007634"; depth 1048 ; unknown ; synonymous GL193087.1 samtools variation 474052 474052 . . . alleles " C T"; frequencies " 0.425 0.575"; depth 40 ; unknown ; non-synonymous GL193087.1 samtools variation 474053 474053 . . . alleles " A C"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; unknown ; synonymous GL193087.1 samtools variation 474054 474054 . . . alleles " G C"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; non-synonymous GL193087.1 samtools variation 483410 483410 . . . alleles " G A"; frequencies " 0.659810126582278 0.338607594936709"; depth 632 ; unknown ; synonymous GL193087.1 samtools variation 612285 612285 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; synonymous GL193087.1 samtools variation 612784 612784 . . . alleles " A G"; frequencies " 0.324675324675325 0.675324675324675"; depth 77 ; known ; non-synonymous GL193087.1 samtools variation 623354 623354 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193087.1 samtools variation 701583 701583 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193087.1 samtools variation 711972 711972 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 568 ; known ; N/A GL193087.1 samtools variation 712950 712950 . . . alleles " C T"; frequencies " 0.726744186046512 0.273255813953488"; depth 172 ; unknown ; synonymous GL193087.1 samtools variation 716226 716226 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193087.1 samtools variation 724803 724803 . . . alleles " C T"; frequencies " 0.747524752475248 0.252475247524752"; depth 202 ; unknown ; non-synonymous GL193087.1 samtools variation 736598 736598 . . . alleles " G T"; frequencies " 0.315217391304348 0.684782608695652"; depth 276 ; known ; N/A GL193087.1 samtools variation 739049 739049 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL193087.1 samtools variation 743584 743584 . . . alleles " A C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193087.1 samtools variation 754735 754735 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193087.1 samtools variation 770366 770366 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 60 ; unknown ; N/A GL193087.1 samtools variation 780149 780149 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193087.1 samtools variation 781594 781594 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193087.1 samtools variation 787819 787819 . . . alleles " T C"; frequencies " 0.263456090651558 0.736543909348442"; depth 353 ; unknown ; N/A GL193087.1 samtools variation 845507 845507 . . . alleles " C T"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL193087.1 samtools variation 863780 863780 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 42 ; unknown ; N/A GL193087.1 samtools variation 942320 942320 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL193087.1 samtools variation 944765 944765 . . . alleles " G T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193087.1 samtools variation 946371 946371 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193087.1 samtools variation 946724 946724 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 126 ; unknown ; synonymous GL193087.1 samtools variation 947377 947377 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193087.1 samtools variation 975795 975795 . . . alleles " G T"; frequencies " 0.670454545454545 0.329545454545455"; depth 88 ; known ; N/A GL193087.1 samtools variation 982996 982996 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193088.1 samtools variation 69069 69069 . . . alleles " A G"; frequencies " 0.386163522012579 0.613836477987421"; depth 2385 ; unknown ; N/A GL193088.1 samtools variation 73543 73543 . . . alleles " A G"; frequencies " 0.456521739130435 0.543478260869565"; depth 46 ; unknown ; N/A GL193088.1 samtools variation 73740 73740 . . . alleles " G T"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; unknown ; N/A GL193088.1 samtools variation 73969 73969 . . . alleles " A C"; frequencies " 0.272727272727273 0.727272727272727"; depth 33 ; unknown ; N/A GL193088.1 samtools variation 74392 74392 . . . alleles " C T"; frequencies " 0.494036863028551 0.505963136971449"; depth 2767 ; unknown ; non-synonymous GL193088.1 samtools variation 74472 74472 . . . alleles " A G"; frequencies " 0.635802469135803 0.364197530864198"; depth 162 ; unknown ; N/A GL193088.1 samtools variation 74537 74537 . . . alleles " G A"; frequencies " 0.737931034482759 0.262068965517241"; depth 145 ; unknown ; N/A GL193088.1 samtools variation 74724 74724 . . . alleles " G A"; frequencies " 0.330508474576271 0.669491525423729"; depth 118 ; unknown ; N/A GL193088.1 samtools variation 74839 74839 . . . alleles " C T"; frequencies " 0.602739726027397 0.397260273972603"; depth 146 ; unknown ; N/A GL193088.1 samtools variation 74867 74867 . . . alleles " G A"; frequencies " 0.626086956521739 0.373913043478261"; depth 115 ; unknown ; N/A GL193088.1 samtools variation 75054 75054 . . . alleles " C T"; frequencies " 0.56043956043956 0.43956043956044"; depth 273 ; unknown ; N/A GL193088.1 samtools variation 75119 75119 . . . alleles " C A"; frequencies " 0.681766704416761 0.317478293695734"; depth 2649 ; unknown ; N/A GL193088.1 samtools variation 75432 75432 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193088.1 samtools variation 75437 75437 . . . alleles " G C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193088.1 samtools variation 76586 76586 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193088.1 samtools variation 77363 77363 . . . alleles " T C"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL193088.1 samtools variation 80560 80560 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193088.1 samtools variation 80571 80571 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193088.1 samtools variation 82718 82718 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193088.1 samtools variation 82755 82755 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL193088.1 samtools variation 83083 83083 . . . alleles " C T"; frequencies " 0.543478260869565 0.456521739130435"; depth 46 ; unknown ; N/A GL193088.1 samtools variation 83229 83229 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193088.1 samtools variation 86695 86695 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193088.1 samtools variation 89415 89415 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193088.1 samtools variation 90467 90467 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193088.1 samtools variation 93066 93066 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 1900 ; unknown ; non-synonymous GL193088.1 samtools variation 234435 234435 . . . alleles " G T"; frequencies " 0.210526315789474 0.789473684210526"; depth 152 ; unknown ; N/A GL193088.1 samtools variation 238283 238283 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193088.1 samtools variation 243751 243751 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL193088.1 samtools variation 496513 496513 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193088.1 samtools variation 524870 524870 . . . alleles " T C"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; synonymous GL193088.1 samtools variation 591252 591252 . . . alleles " A T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193088.1 samtools variation 751192 751192 . . . alleles " T C"; frequencies " 0.541428571428571 0.458571428571429"; depth 700 ; known ; synonymous GL193089.1 samtools variation 944013 944013 . . . alleles " A G"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL193089.1 samtools variation 961902 961902 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193090.1 samtools variation 65807 65807 . . . alleles " C T"; frequencies " 0.622047244094488 0.377952755905512"; depth 127 ; known ; synonymous GL193090.1 samtools variation 71328 71328 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL193090.1 samtools variation 71398 71398 . . . alleles " G T"; frequencies " 0.464285714285714 0.517857142857143"; depth 168 ; unknown ; non-synonymous GL193090.1 samtools variation 73152 73152 . . . alleles " T C"; frequencies " 0.532467532467532 0.467532467532468"; depth 231 ; unknown ; synonymous GL193090.1 samtools variation 76737 76737 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193090.1 samtools variation 76744 76744 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193090.1 samtools variation 78685 78685 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; synonymous GL193090.1 samtools variation 170551 170551 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193090.1 samtools variation 176106 176106 . . . alleles " G A"; frequencies " 0.467532467532468 0.532467532467532"; depth 154 ; known ; N/A GL193090.1 samtools variation 177588 177588 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 182 ; unknown ; non-synonymous GL193090.1 samtools variation 180852 180852 . . . alleles " C A"; frequencies " 0.73469387755102 0.26530612244898"; depth 49 ; unknown ; N/A GL193090.1 samtools variation 181050 181050 . . . alleles " G C"; frequencies " 0.222222222222222 0.777777777777778"; depth 72 ; unknown ; N/A GL193090.1 samtools variation 210716 210716 . . . alleles " G A"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; unknown ; synonymous GL193090.1 samtools variation 211404 211404 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193090.1 samtools variation 406065 406065 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; synonymous GL193090.1 samtools variation 983086 983086 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193091.1 samtools variation 34294 34294 . . . alleles " T C"; frequencies " 0.794392523364486 0.205607476635514"; depth 107 ; unknown ; N/A GL193091.1 samtools variation 37500 37500 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193091.1 samtools variation 73665 73665 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193091.1 samtools variation 118556 118556 . . . alleles " G T"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; known ; synonymous GL193091.1 samtools variation 148995 148995 . . . alleles " G A"; frequencies " 0.335714285714286 0.664285714285714"; depth 280 ; known ; N/A GL193091.1 samtools variation 149200 149200 . . . alleles " C T"; frequencies " 0.549295774647887 0.450704225352113"; depth 71 ; known ; synonymous GL193091.1 samtools variation 150172 150172 . . . alleles " T C"; frequencies " 0.791666666666667 0.208333333333333"; depth 120 ; unknown ; N/A GL193091.1 samtools variation 150293 150293 . . . alleles " G A"; frequencies " 0.721518987341772 0.278481012658228"; depth 79 ; unknown ; N/A GL193091.1 samtools variation 150424 150424 . . . alleles " T C"; frequencies " 0.779411764705882 0.220588235294118"; depth 68 ; known ; N/A GL193091.1 samtools variation 151291 151291 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; known ; N/A GL193091.1 samtools variation 151302 151302 . . . alleles " C T"; frequencies " 0.28125 0.71875"; depth 32 ; known ; N/A GL193091.1 samtools variation 151699 151699 . . . alleles " C T"; frequencies " 0.697674418604651 0.302325581395349"; depth 86 ; known ; non-synonymous GL193091.1 samtools variation 154193 154193 . . . alleles " C A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193091.1 samtools variation 155257 155257 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 120 ; known ; non-synonymous GL193091.1 samtools variation 156280 156280 . . . alleles " C T"; frequencies " 0.753846153846154 0.246153846153846"; depth 65 ; known ; non-synonymous GL193091.1 samtools variation 156785 156785 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; non-synonymous GL193091.1 samtools variation 158216 158216 . . . alleles " A G"; frequencies " 0.264150943396226 0.735849056603774"; depth 106 ; unknown ; synonymous GL193091.1 samtools variation 175936 175936 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193091.1 samtools variation 211412 211412 . . . alleles " G A"; frequencies " 0.718503937007874 0.281496062992126"; depth 508 ; unknown ; N/A GL193091.1 samtools variation 211535 211535 . . . alleles " G A"; frequencies " 0.402597402597403 0.597402597402597"; depth 308 ; unknown ; N/A GL193091.1 samtools variation 211943 211943 . . . alleles " A G"; frequencies " 0.60655737704918 0.39344262295082"; depth 183 ; known ; N/A GL193091.1 samtools variation 211960 211960 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 176 ; known ; N/A GL193091.1 samtools variation 212059 212059 . . . alleles " C T"; frequencies " 0.385507246376812 0.614492753623188"; depth 345 ; known ; N/A GL193091.1 samtools variation 212409 212409 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 92 ; known ; N/A GL193091.1 samtools variation 212694 212694 . . . alleles " A G"; frequencies " 0.783673469387755 0.216326530612245"; depth 245 ; unknown ; N/A GL193091.1 samtools variation 213294 213294 . . . alleles " C T"; frequencies " 0.727699530516432 0.272300469483568"; depth 213 ; known ; N/A GL193091.1 samtools variation 213846 213846 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 65 ; known ; N/A GL193091.1 samtools variation 213884 213884 . . . alleles " G T"; frequencies " 0.621951219512195 0.378048780487805"; depth 82 ; known ; N/A GL193091.1 samtools variation 214004 214004 . . . alleles " G A"; frequencies " 0.573033707865168 0.426966292134831"; depth 89 ; known ; N/A GL193091.1 samtools variation 214025 214025 . . . alleles " C T"; frequencies " 0.582089552238806 0.417910447761194"; depth 67 ; known ; N/A GL193091.1 samtools variation 215031 215031 . . . alleles " C A"; frequencies " 0.783018867924528 0.216981132075472"; depth 106 ; unknown ; synonymous GL193091.1 samtools variation 223886 223886 . . . alleles " G A"; frequencies " 0.745222929936306 0.248407643312102"; depth 157 ; unknown ; synonymous GL193091.1 samtools variation 225361 225361 . . . alleles " T A"; frequencies " 0.698275862068966 0.301724137931034"; depth 116 ; unknown ; synonymous GL193091.1 samtools variation 233561 233561 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL193091.1 samtools variation 398677 398677 . . . alleles " T C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; N/A GL193091.1 samtools variation 398714 398714 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193091.1 samtools variation 398761 398761 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193091.1 samtools variation 421086 421086 . . . alleles " A G"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; known ; N/A GL193091.1 samtools variation 421942 421942 . . . alleles " G A"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; known ; N/A GL193091.1 samtools variation 421974 421974 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; unknown ; N/A GL193091.1 samtools variation 423591 423591 . . . alleles " G A"; frequencies " 0.245614035087719 0.754385964912281"; depth 57 ; known ; N/A GL193091.1 samtools variation 423930 423930 . . . alleles " C T"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; known ; N/A GL193091.1 samtools variation 431265 431265 . . . alleles " C T"; frequencies " 0.635714285714286 0.364285714285714"; depth 140 ; unknown ; N/A GL193091.1 samtools variation 431690 431690 . . . alleles " G A"; frequencies " 0.568181818181818 0.431818181818182"; depth 1144 ; unknown ; non-synonymous GL193091.1 samtools variation 435905 435905 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL193091.1 samtools variation 435969 435969 . . . alleles " A C"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL193091.1 samtools variation 440349 440349 . . . alleles " A T"; frequencies " 0.649328859060403 0.350671140939597"; depth 1788 ; unknown ; non-synonymous GL193091.1 samtools variation 441837 441837 . . . alleles " T C"; frequencies " 0.640449438202247 0.359550561797753"; depth 89 ; unknown ; N/A GL193091.1 samtools variation 442380 442380 . . . alleles " A C"; frequencies " 0.562111801242236 0.437888198757764"; depth 322 ; unknown ; N/A GL193091.1 samtools variation 442957 442957 . . . alleles " C T"; frequencies " 0.547445255474453 0.452554744525547"; depth 137 ; unknown ; N/A GL193091.1 samtools variation 443538 443538 . . . alleles " A C"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL193091.1 samtools variation 443694 443694 . . . alleles " A G"; frequencies " 0.598726114649682 0.401273885350318"; depth 157 ; unknown ; N/A GL193091.1 samtools variation 443711 443711 . . . alleles " C T"; frequencies " 0.591954022988506 0.408045977011494"; depth 174 ; unknown ; N/A GL193091.1 samtools variation 444526 444526 . . . alleles " G A"; frequencies " 0.554973821989529 0.445026178010471"; depth 382 ; unknown ; N/A GL193091.1 samtools variation 445350 445350 . . . alleles " C T"; frequencies " 0.64945652173913 0.35054347826087"; depth 368 ; unknown ; N/A GL193091.1 samtools variation 445395 445395 . . . alleles " G A"; frequencies " 0.636546184738956 0.363453815261044"; depth 498 ; unknown ; N/A GL193091.1 samtools variation 446040 446040 . . . alleles " C T"; frequencies " 0.34375 0.65625"; depth 256 ; unknown ; N/A GL193091.1 samtools variation 446111 446111 . . . alleles " G A"; frequencies " 0.460674157303371 0.539325842696629"; depth 178 ; unknown ; N/A GL193091.1 samtools variation 446189 446189 . . . alleles " T G"; frequencies " 0.726315789473684 0.273684210526316"; depth 95 ; unknown ; N/A GL193091.1 samtools variation 446358 446358 . . . alleles " G T"; frequencies " 0.790513833992095 0.209486166007905"; depth 253 ; unknown ; N/A GL193091.1 samtools variation 446390 446390 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 294 ; unknown ; N/A GL193091.1 samtools variation 446409 446409 . . . alleles " G A"; frequencies " 0.744897959183674 0.255102040816327"; depth 392 ; unknown ; N/A GL193091.1 samtools variation 448068 448068 . . . alleles " C T"; frequencies " 0.516363636363636 0.483636363636364"; depth 550 ; unknown ; N/A GL193091.1 samtools variation 448174 448174 . . . alleles " A T"; frequencies " 0.546666666666667 0.451851851851852"; depth 675 ; unknown ; N/A GL193091.1 samtools variation 448326 448326 . . . alleles " C T"; frequencies " 0.656746031746032 0.343253968253968"; depth 504 ; unknown ; N/A GL193091.1 samtools variation 448373 448373 . . . alleles " G A"; frequencies " 0.62797619047619 0.369047619047619"; depth 336 ; unknown ; N/A GL193091.1 samtools variation 448384 448384 . . . alleles " C T"; frequencies " 0.594086021505376 0.405913978494624"; depth 372 ; unknown ; N/A GL193091.1 samtools variation 448583 448583 . . . alleles " T C"; frequencies " 0.666666666666667 0.324561403508772"; depth 114 ; unknown ; N/A GL193091.1 samtools variation 449200 449200 . . . alleles " A G"; frequencies " 0.560606060606061 0.439393939393939"; depth 132 ; unknown ; N/A GL193091.1 samtools variation 449298 449298 . . . alleles " C T"; frequencies " 0.741626794258373 0.258373205741627"; depth 209 ; unknown ; N/A GL193091.1 samtools variation 449780 449780 . . . alleles " T C"; frequencies " 0.416149068322981 0.583850931677019"; depth 161 ; unknown ; N/A GL193091.1 samtools variation 449960 449960 . . . alleles " T C"; frequencies " 0.589147286821705 0.410852713178295"; depth 129 ; unknown ; N/A GL193091.1 samtools variation 450020 450020 . . . alleles " T C"; frequencies " 0.627723690310617 0.372276309689383"; depth 2157 ; unknown ; synonymous GL193091.1 samtools variation 450904 450904 . . . alleles " A G"; frequencies " 0.708904109589041 0.291095890410959"; depth 292 ; unknown ; N/A GL193091.1 samtools variation 450950 450950 . . . alleles " C T"; frequencies " 0.722543352601156 0.277456647398844"; depth 173 ; unknown ; N/A GL193091.1 samtools variation 451211 451211 . . . alleles " G A"; frequencies " 0.774117647058824 0.225882352941176"; depth 425 ; unknown ; N/A GL193091.1 samtools variation 451227 451227 . . . alleles " G T"; frequencies " 0.72752808988764 0.27247191011236"; depth 356 ; unknown ; N/A GL193091.1 samtools variation 451419 451419 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 320 ; unknown ; N/A GL193091.1 samtools variation 452364 452364 . . . alleles " T C"; frequencies " 0.58695652173913 0.41304347826087"; depth 46 ; unknown ; N/A GL193091.1 samtools variation 453269 453269 . . . alleles " G A"; frequencies " 0.745762711864407 0.254237288135593"; depth 59 ; unknown ; N/A GL193091.1 samtools variation 453890 453890 . . . alleles " G T"; frequencies " 0.644628099173554 0.355371900826446"; depth 121 ; unknown ; N/A GL193091.1 samtools variation 454084 454084 . . . alleles " T C"; frequencies " 0.5785 0.4215"; depth 2000 ; unknown ; synonymous GL193091.1 samtools variation 467454 467454 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; synonymous GL193091.1 samtools variation 476073 476073 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193091.1 samtools variation 477226 477226 . . . alleles " T C"; frequencies " 0.534883720930233 0.465116279069767"; depth 43 ; known ; synonymous GL193091.1 samtools variation 479256 479256 . . . alleles " C T"; frequencies " 0.528571428571429 0.471428571428571"; depth 280 ; unknown ; N/A GL193091.1 samtools variation 479572 479572 . . . alleles " A G"; frequencies " 0.605633802816901 0.394366197183099"; depth 142 ; known ; N/A GL193091.1 samtools variation 487491 487491 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193091.1 samtools variation 491075 491075 . . . alleles " A G"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL193091.1 samtools variation 492553 492553 . . . alleles " C T"; frequencies " 0.753424657534247 0.219178082191781"; depth 73 ; unknown ; N/A GL193091.1 samtools variation 492977 492977 . . . alleles " A G"; frequencies " 0.509803921568627 0.490196078431373"; depth 51 ; unknown ; N/A GL193091.1 samtools variation 493046 493046 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; N/A GL193091.1 samtools variation 493357 493357 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193091.1 samtools variation 493454 493454 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193091.1 samtools variation 493807 493807 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193091.1 samtools variation 493942 493942 . . . alleles " T A"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL193091.1 samtools variation 494045 494045 . . . alleles " A G"; frequencies " 0.280898876404494 0.719101123595506"; depth 89 ; unknown ; synonymous GL193091.1 samtools variation 646160 646160 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; unknown ; synonymous GL193091.1 samtools variation 648245 648245 . . . alleles " A G"; frequencies " 0.703703703703704 0.296296296296296"; depth 54 ; unknown ; synonymous GL193091.1 samtools variation 668733 668733 . . . alleles " T C"; frequencies " 0.779411764705882 0.220588235294118"; depth 68 ; unknown ; synonymous GL193091.1 samtools variation 697882 697882 . . . alleles " T C"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; synonymous GL193091.1 samtools variation 697903 697903 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; synonymous GL193091.1 samtools variation 702979 702979 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL193091.1 samtools variation 704700 704700 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193091.1 samtools variation 706130 706130 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193091.1 samtools variation 706210 706210 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193091.1 samtools variation 706423 706423 . . . alleles " T C"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; non-synonymous GL193091.1 samtools variation 706437 706437 . . . alleles " A G"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; non-synonymous GL193092.1 samtools variation 132053 132053 . . . alleles " T G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; synonymous GL193092.1 samtools variation 184366 184366 . . . alleles " A G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL193092.1 samtools variation 202981 202981 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193092.1 samtools variation 203144 203144 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193092.1 samtools variation 204443 204443 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193092.1 samtools variation 206464 206464 . . . alleles " T C"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL193092.1 samtools variation 207049 207049 . . . alleles " C T"; frequencies " 0.382222222222222 0.615555555555556"; depth 450 ; known ; synonymous GL193092.1 samtools variation 207247 207247 . . . alleles " G A"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; known ; N/A GL193092.1 samtools variation 209713 209713 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193092.1 samtools variation 210393 210393 . . . alleles " G A"; frequencies " 0.351063829787234 0.648936170212766"; depth 94 ; known ; N/A GL193092.1 samtools variation 211157 211157 . . . alleles " A G"; frequencies " 0.31981981981982 0.677927927927928"; depth 888 ; known ; non-synonymous GL193092.1 samtools variation 211162 211162 . . . alleles " G A"; frequencies " 0.368055555555556 0.631944444444444"; depth 720 ; known ; non-synonymous GL193092.1 samtools variation 211295 211295 . . . alleles " C G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; known ; N/A GL193092.1 samtools variation 212958 212958 . . . alleles " G A"; frequencies " 0.688359303391384 0.311640696608616"; depth 1091 ; known ; N/A GL193092.1 samtools variation 215178 215178 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193092.1 samtools variation 225424 225424 . . . alleles " A G"; frequencies " 0.584615384615385 0.415384615384615"; depth 65 ; known ; N/A GL193092.1 samtools variation 225443 225443 . . . alleles " A G"; frequencies " 0.594594594594595 0.405405405405405"; depth 74 ; known ; N/A GL193092.1 samtools variation 226073 226073 . . . alleles " A G"; frequencies " 0.531914893617021 0.468085106382979"; depth 47 ; known ; non-synonymous GL193092.1 samtools variation 226681 226681 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193092.1 samtools variation 227428 227428 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193092.1 samtools variation 227534 227534 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193092.1 samtools variation 227857 227857 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; known ; non-synonymous GL193092.1 samtools variation 262902 262902 . . . alleles " C T"; frequencies " 0.673684210526316 0.326315789473684"; depth 95 ; known ; non-synonymous GL193092.1 samtools variation 262933 262933 . . . alleles " T C"; frequencies " 0.734177215189873 0.265822784810127"; depth 79 ; known ; synonymous GL193092.1 samtools variation 263449 263449 . . . alleles " C T"; frequencies " 0.659574468085106 0.340425531914894"; depth 47 ; known ; non-synonymous GL193092.1 samtools variation 265013 265013 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 88 ; known ; synonymous GL193092.1 samtools variation 265405 265405 . . . alleles " G A"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; synonymous GL193092.1 samtools variation 344889 344889 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 253 ; unknown ; synonymous GL193092.1 samtools variation 346963 346963 . . . alleles " G T"; frequencies " 0.694444444444444 0.291666666666667"; depth 72 ; unknown ; N/A GL193092.1 samtools variation 461932 461932 . . . alleles " T C"; frequencies " 0.63265306122449 0.36734693877551"; depth 98 ; unknown ; N/A GL193092.1 samtools variation 472242 472242 . . . alleles " T C"; frequencies " 0.73972602739726 0.26027397260274"; depth 146 ; unknown ; non-synonymous GL193092.1 samtools variation 596207 596207 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193092.1 samtools variation 622777 622777 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193092.1 samtools variation 628093 628093 . . . alleles " C T"; frequencies " 0.779816513761468 0.220183486238532"; depth 218 ; unknown ; synonymous GL193092.1 samtools variation 649225 649225 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL193092.1 samtools variation 675104 675104 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193092.1 samtools variation 678724 678724 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 153 ; known ; synonymous GL193092.1 samtools variation 692421 692421 . . . alleles " C G"; frequencies " 0.71875 0.28125"; depth 32 ; known ; N/A GL193092.1 samtools variation 692437 692437 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL193092.1 samtools variation 699943 699943 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193092.1 samtools variation 737827 737827 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 91 ; unknown ; N/A GL193092.1 samtools variation 739907 739907 . . . alleles " G A"; frequencies " 0.540540540540541 0.459459459459459"; depth 37 ; unknown ; N/A GL193092.1 samtools variation 742484 742484 . . . alleles " C T"; frequencies " 0.277777777777778 0.722222222222222"; depth 72 ; known ; N/A GL193092.1 samtools variation 743122 743122 . . . alleles " G A"; frequencies " 0.584615384615385 0.415384615384615"; depth 65 ; unknown ; N/A GL193092.1 samtools variation 748226 748226 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL193092.1 samtools variation 769105 769105 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; non-synonymous GL193092.1 samtools variation 773311 773311 . . . alleles " G C"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL193092.1 samtools variation 773329 773329 . . . alleles " C G"; frequencies " 0.773584905660377 0.226415094339623"; depth 53 ; known ; N/A GL193092.1 samtools variation 823008 823008 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 95 ; unknown ; N/A GL193092.1 samtools variation 835246 835246 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 30 ; known ; N/A GL193092.1 samtools variation 836893 836893 . . . alleles " C T"; frequencies " 0.382352941176471 0.617647058823529"; depth 34 ; known ; N/A GL193092.1 samtools variation 865098 865098 . . . alleles " G C"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; unknown ; non-synonymous GL193092.1 samtools variation 867300 867300 . . . alleles " G T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193093.1 samtools variation 4354 4354 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL193093.1 samtools variation 4355 4355 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL193093.1 samtools variation 9484 9484 . . . alleles " G T"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL193093.1 samtools variation 9684 9684 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL193093.1 samtools variation 12049 12049 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL193093.1 samtools variation 22140 22140 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193093.1 samtools variation 22634 22634 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193093.1 samtools variation 38128 38128 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL193093.1 samtools variation 40340 40340 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193093.1 samtools variation 45063 45063 . . . alleles " T C"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL193093.1 samtools variation 45182 45182 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL193093.1 samtools variation 53406 53406 . . . alleles " T C"; frequencies " 0.68 0.32"; depth 50 ; unknown ; N/A GL193093.1 samtools variation 59390 59390 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL193093.1 samtools variation 61369 61369 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 40 ; unknown ; N/A GL193093.1 samtools variation 72292 72292 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193093.1 samtools variation 123953 123953 . . . alleles " G T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193093.1 samtools variation 124101 124101 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193093.1 samtools variation 132043 132043 . . . alleles " C T"; frequencies " 0.455399061032864 0.544600938967136"; depth 213 ; unknown ; N/A GL193093.1 samtools variation 132576 132576 . . . alleles " C T"; frequencies " 0.735849056603774 0.245283018867925"; depth 53 ; unknown ; N/A GL193093.1 samtools variation 132750 132750 . . . alleles " A G"; frequencies " 0.204081632653061 0.795918367346939"; depth 98 ; unknown ; N/A GL193093.1 samtools variation 151567 151567 . . . alleles " T C"; frequencies " 0.745222929936306 0.254777070063694"; depth 314 ; unknown ; N/A GL193093.1 samtools variation 184427 184427 . . . alleles " T G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193093.1 samtools variation 185662 185662 . . . alleles " T C"; frequencies " 0.346153846153846 0.576923076923077"; depth 52 ; known ; N/A GL193093.1 samtools variation 186101 186101 . . . alleles " C G"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; known ; N/A GL193093.1 samtools variation 340850 340850 . . . alleles " A T"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL193093.1 samtools variation 391353 391353 . . . alleles " A G"; frequencies " 0.32 0.68"; depth 50 ; known ; synonymous GL193093.1 samtools variation 410714 410714 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193093.1 samtools variation 443521 443521 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193094.1 samtools variation 112620 112620 . . . alleles " A G"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; unknown ; N/A GL193094.1 samtools variation 113461 113461 . . . alleles " G T"; frequencies " 0.701754385964912 0.298245614035088"; depth 57 ; unknown ; N/A GL193094.1 samtools variation 124102 124102 . . . alleles " G C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193094.1 samtools variation 125485 125485 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193094.1 samtools variation 376226 376226 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 25 ; unknown ; non-synonymous GL193094.1 samtools variation 425794 425794 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193094.1 samtools variation 428361 428361 . . . alleles " G A"; frequencies " 0.646464646464647 0.353535353535354"; depth 99 ; unknown ; N/A GL193094.1 samtools variation 429334 429334 . . . alleles " T C"; frequencies " 0.659340659340659 0.340659340659341"; depth 91 ; unknown ; N/A GL193094.1 samtools variation 602149 602149 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193094.1 samtools variation 615475 615475 . . . alleles " T A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193096.1 samtools variation 268225 268225 . . . alleles " A G"; frequencies " 0.58695652173913 0.41304347826087"; depth 46 ; known ; N/A GL193096.1 samtools variation 270831 270831 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL193096.1 samtools variation 272944 272944 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193096.1 samtools variation 273237 273237 . . . alleles " G C"; frequencies " 0.728682170542636 0.271317829457364"; depth 129 ; known ; N/A GL193096.1 samtools variation 273450 273450 . . . alleles " A G"; frequencies " 0.793764988009592 0.206235011990408"; depth 417 ; unknown ; N/A GL193096.1 samtools variation 308317 308317 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL193096.1 samtools variation 315858 315858 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193096.1 samtools variation 419236 419236 . . . alleles " A C"; frequencies " 0.692307692307692 0.307692307692308"; depth 78 ; unknown ; N/A GL193096.1 samtools variation 419237 419237 . . . alleles " T C"; frequencies " 0.688311688311688 0.311688311688312"; depth 77 ; unknown ; N/A GL193096.1 samtools variation 422559 422559 . . . alleles " C G"; frequencies " 0.53185595567867 0.46814404432133"; depth 361 ; known ; synonymous GL193096.1 samtools variation 521265 521265 . . . alleles " A G"; frequencies " 0.25531914893617 0.74468085106383"; depth 47 ; known ; N/A GL193097.1 samtools variation 84835 84835 . . . alleles " C G"; frequencies " 0.728260869565217 0.271739130434783"; depth 92 ; unknown ; N/A GL193097.1 samtools variation 84988 84988 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 48 ; unknown ; N/A GL193097.1 samtools variation 85424 85424 . . . alleles " C T"; frequencies " 0.607142857142857 0.392857142857143"; depth 112 ; unknown ; N/A GL193097.1 samtools variation 86812 86812 . . . alleles " T C"; frequencies " 0.723076923076923 0.276923076923077"; depth 260 ; unknown ; N/A GL193097.1 samtools variation 86882 86882 . . . alleles " T C"; frequencies " 0.768472906403941 0.231527093596059"; depth 203 ; unknown ; N/A GL193097.1 samtools variation 87099 87099 . . . alleles " C T"; frequencies " 0.674641148325359 0.325358851674641"; depth 209 ; unknown ; N/A GL193097.1 samtools variation 87143 87143 . . . alleles " A G"; frequencies " 0.658878504672897 0.341121495327103"; depth 214 ; unknown ; N/A GL193097.1 samtools variation 87215 87215 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 63 ; unknown ; N/A GL193097.1 samtools variation 87408 87408 . . . alleles " T C"; frequencies " 0.674242424242424 0.325757575757576"; depth 132 ; unknown ; N/A GL193097.1 samtools variation 87478 87478 . . . alleles " G A"; frequencies " 0.73936170212766 0.26063829787234"; depth 188 ; unknown ; N/A GL193097.1 samtools variation 87958 87958 . . . alleles " C G"; frequencies " 0.633620689655172 0.366379310344828"; depth 232 ; unknown ; N/A GL193097.1 samtools variation 87998 87998 . . . alleles " C T"; frequencies " 0.355191256830601 0.644808743169399"; depth 183 ; unknown ; N/A GL193097.1 samtools variation 88229 88229 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 240 ; unknown ; N/A GL193097.1 samtools variation 91800 91800 . . . alleles " G T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193097.1 samtools variation 91998 91998 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL193097.1 samtools variation 92020 92020 . . . alleles " G C"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL193097.1 samtools variation 92489 92489 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193097.1 samtools variation 109151 109151 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193097.1 samtools variation 257213 257213 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; non-synonymous GL193097.1 samtools variation 271315 271315 . . . alleles " A C"; frequencies " 0.531914893617021 0.468085106382979"; depth 47 ; unknown ; non-synonymous GL193097.1 samtools variation 271318 271318 . . . alleles " C T"; frequencies " 0.541666666666667 0.458333333333333"; depth 48 ; unknown ; non-synonymous GL193097.1 samtools variation 280638 280638 . . . alleles " A G"; frequencies " 0.287671232876712 0.712328767123288"; depth 73 ; unknown ; non-synonymous GL193097.1 samtools variation 281575 281575 . . . alleles " G A"; frequencies " 0.413223140495868 0.586776859504132"; depth 121 ; unknown ; non-synonymous GL193097.1 samtools variation 287366 287366 . . . alleles " T C"; frequencies " 0.367088607594937 0.632911392405063"; depth 79 ; unknown ; synonymous GL193097.1 samtools variation 296403 296403 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL193097.1 samtools variation 319485 319485 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193097.1 samtools variation 330087 330087 . . . alleles " C G"; frequencies " 0.730769230769231 0.269230769230769"; depth 52 ; unknown ; N/A GL193097.1 samtools variation 337313 337313 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193098.1 samtools variation 352628 352628 . . . alleles " T C"; frequencies " 0.742424242424242 0.257575757575758"; depth 66 ; unknown ; N/A GL193098.1 samtools variation 353458 353458 . . . alleles " C T"; frequencies " 0.442307692307692 0.557692307692308"; depth 52 ; unknown ; N/A GL193098.1 samtools variation 773076 773076 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193098.1 samtools variation 804823 804823 . . . alleles " C T"; frequencies " 0.617801047120419 0.382198952879581"; depth 191 ; unknown ; N/A GL193100.1 samtools variation 94653 94653 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193100.1 samtools variation 250891 250891 . . . alleles " T A"; frequencies " 0.785714285714286 0.214285714285714"; depth 182 ; known ; N/A GL193100.1 samtools variation 436460 436460 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193100.1 samtools variation 442884 442884 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193100.1 samtools variation 480000 480000 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; synonymous GL193100.1 samtools variation 600515 600515 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193100.1 samtools variation 600581 600581 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193100.1 samtools variation 736047 736047 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193100.1 samtools variation 831539 831539 . . . alleles " A G"; frequencies " 0.410714285714286 0.589285714285714"; depth 56 ; unknown ; N/A GL193100.1 samtools variation 831985 831985 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193100.1 samtools variation 832043 832043 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193100.1 samtools variation 859717 859717 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL193100.1 samtools variation 913709 913709 . . . alleles " C T"; frequencies " 0.768115942028985 0.231884057971014"; depth 69 ; unknown ; N/A GL193100.1 samtools variation 968977 968977 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 39 ; known ; N/A GL193100.1 samtools variation 972872 972872 . . . alleles " G A"; frequencies " 0.786885245901639 0.213114754098361"; depth 61 ; known ; N/A GL193100.1 samtools variation 978236 978236 . . . alleles " C T"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL193101.1 samtools variation 14283 14283 . . . alleles " A C"; frequencies " 0.317073170731707 0.682926829268293"; depth 41 ; known ; non-synonymous GL193101.1 samtools variation 15284 15284 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193101.1 samtools variation 16123 16123 . . . alleles " G A"; frequencies " 0.78 0.22"; depth 100 ; known ; N/A GL193101.1 samtools variation 41733 41733 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193101.1 samtools variation 48709 48709 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 56 ; known ; N/A GL193101.1 samtools variation 48720 48720 . . . alleles " A G"; frequencies " 0.350877192982456 0.649122807017544"; depth 57 ; known ; N/A GL193101.1 samtools variation 67847 67847 . . . alleles " C G"; frequencies " 0.276315789473684 0.723684210526316"; depth 76 ; known ; N/A GL193101.1 samtools variation 346680 346680 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL193101.1 samtools variation 465316 465316 . . . alleles " A T"; frequencies " 0.204545454545455 0.795454545454545"; depth 44 ; known ; non-synonymous GL193102.1 samtools variation 821035 821035 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 77 ; known ; N/A GL193102.1 samtools variation 848589 848589 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193102.1 samtools variation 897189 897189 . . . alleles " C T"; frequencies " 0.691666666666667 0.308333333333333"; depth 120 ; unknown ; synonymous GL193102.1 samtools variation 921262 921262 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193102.1 samtools variation 949265 949265 . . . alleles " C T"; frequencies " 0.691358024691358 0.308641975308642"; depth 81 ; unknown ; synonymous GL193102.1 samtools variation 960332 960332 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193103.1 samtools variation 28191 28191 . . . alleles " T C"; frequencies " 0.406779661016949 0.593220338983051"; depth 59 ; unknown ; N/A GL193103.1 samtools variation 28623 28623 . . . alleles " G T"; frequencies " 0.444444444444444 0.555555555555556"; depth 81 ; unknown ; N/A GL193103.1 samtools variation 30397 30397 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 77 ; unknown ; N/A GL193103.1 samtools variation 31236 31236 . . . alleles " A G"; frequencies " 0.467889908256881 0.532110091743119"; depth 218 ; unknown ; N/A GL193103.1 samtools variation 31474 31474 . . . alleles " T A"; frequencies " 0.425414364640884 0.574585635359116"; depth 181 ; unknown ; N/A GL193103.1 samtools variation 31475 31475 . . . alleles " C A"; frequencies " 0.418994413407821 0.581005586592179"; depth 179 ; unknown ; N/A GL193103.1 samtools variation 31774 31774 . . . alleles " T C"; frequencies " 0.689075630252101 0.310924369747899"; depth 119 ; unknown ; N/A GL193103.1 samtools variation 31798 31798 . . . alleles " T C"; frequencies " 0.725274725274725 0.274725274725275"; depth 91 ; unknown ; N/A GL193103.1 samtools variation 33824 33824 . . . alleles " A G"; frequencies " 0.554170661553212 0.445829338446788"; depth 1043 ; unknown ; N/A GL193103.1 samtools variation 37744 37744 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193103.1 samtools variation 39899 39899 . . . alleles " A G"; frequencies " 0.46969696969697 0.53030303030303"; depth 66 ; unknown ; N/A GL193103.1 samtools variation 42850 42850 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; unknown ; N/A GL193103.1 samtools variation 44147 44147 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 52 ; unknown ; N/A GL193103.1 samtools variation 46404 46404 . . . alleles " G A"; frequencies " 0.679389312977099 0.320610687022901"; depth 131 ; unknown ; N/A GL193103.1 samtools variation 49339 49339 . . . alleles " A G"; frequencies " 0.351515151515152 0.642424242424242"; depth 165 ; unknown ; N/A GL193103.1 samtools variation 49465 49465 . . . alleles " A T"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; unknown ; N/A GL193103.1 samtools variation 49942 49942 . . . alleles " A T"; frequencies " 0.376068376068376 0.623931623931624"; depth 117 ; unknown ; N/A GL193103.1 samtools variation 56664 56664 . . . alleles " C T"; frequencies " 0.476635514018692 0.523364485981308"; depth 107 ; unknown ; N/A GL193103.1 samtools variation 56749 56749 . . . alleles " C A"; frequencies " 0.41304347826087 0.58695652173913"; depth 92 ; unknown ; N/A GL193103.1 samtools variation 57121 57121 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 63 ; unknown ; N/A GL193103.1 samtools variation 62285 62285 . . . alleles " G A"; frequencies " 0.672566371681416 0.327433628318584"; depth 113 ; unknown ; N/A GL193103.1 samtools variation 62836 62836 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193103.1 samtools variation 66131 66131 . . . alleles " C G"; frequencies " 0.49618320610687 0.50381679389313"; depth 131 ; unknown ; N/A GL193103.1 samtools variation 68045 68045 . . . alleles " C G"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL193103.1 samtools variation 69260 69260 . . . alleles " A C"; frequencies " 0.217391304347826 0.782608695652174"; depth 46 ; unknown ; N/A GL193103.1 samtools variation 69484 69484 . . . alleles " C T"; frequencies " 0.456521739130435 0.543478260869565"; depth 46 ; unknown ; N/A GL193103.1 samtools variation 83512 83512 . . . alleles " A C"; frequencies " 0.428571428571429 0.571428571428571"; depth 35 ; unknown ; N/A GL193103.1 samtools variation 99249 99249 . . . alleles " G T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193103.1 samtools variation 105650 105650 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193103.1 samtools variation 105943 105943 . . . alleles " T C"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; N/A GL193103.1 samtools variation 106246 106246 . . . alleles " T A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193103.1 samtools variation 106344 106344 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193103.1 samtools variation 106718 106718 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193103.1 samtools variation 116081 116081 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193103.1 samtools variation 119631 119631 . . . alleles " G C"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL193103.1 samtools variation 120133 120133 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193103.1 samtools variation 121800 121800 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL193103.1 samtools variation 126121 126121 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193103.1 samtools variation 140341 140341 . . . alleles " C G"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; unknown ; N/A GL193103.1 samtools variation 141513 141513 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL193103.1 samtools variation 146831 146831 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193103.1 samtools variation 148089 148089 . . . alleles " T A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193103.1 samtools variation 150023 150023 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193103.1 samtools variation 206925 206925 . . . alleles " C A"; frequencies " 0.588235294117647 0.411764705882353"; depth 102 ; unknown ; N/A GL193103.1 samtools variation 232663 232663 . . . alleles " C T"; frequencies " 0.686567164179104 0.313432835820896"; depth 67 ; unknown ; non-synonymous GL193103.1 samtools variation 236771 236771 . . . alleles " G A"; frequencies " 0.633333333333333 0.366666666666667"; depth 90 ; unknown ; synonymous GL193103.1 samtools variation 245512 245512 . . . alleles " T G"; frequencies " 0.622222222222222 0.377777777777778"; depth 45 ; unknown ; N/A GL193103.1 samtools variation 245515 245515 . . . alleles " C G"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; unknown ; N/A GL193103.1 samtools variation 246280 246280 . . . alleles " G A"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL193104.1 samtools variation 873064 873064 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193105.1 samtools variation 320650 320650 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; synonymous GL193105.1 samtools variation 352131 352131 . . . alleles " T C"; frequencies " 0.253521126760563 0.746478873239437"; depth 71 ; unknown ; N/A GL193105.1 samtools variation 352301 352301 . . . alleles " G A"; frequencies " 0.68 0.32"; depth 75 ; unknown ; N/A GL193105.1 samtools variation 352341 352341 . . . alleles " G A"; frequencies " 0.247706422018349 0.752293577981651"; depth 109 ; unknown ; N/A GL193105.1 samtools variation 353322 353322 . . . alleles " C T"; frequencies " 0.295081967213115 0.704918032786885"; depth 122 ; unknown ; N/A GL193105.1 samtools variation 353456 353456 . . . alleles " C T"; frequencies " 0.628571428571429 0.371428571428571"; depth 105 ; unknown ; N/A GL193105.1 samtools variation 353578 353578 . . . alleles " T C"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; unknown ; N/A GL193105.1 samtools variation 353640 353640 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; unknown ; N/A GL193105.1 samtools variation 354159 354159 . . . alleles " A G"; frequencies " 0.674074074074074 0.325925925925926"; depth 135 ; unknown ; N/A GL193105.1 samtools variation 354168 354168 . . . alleles " G C"; frequencies " 0.3515625 0.6484375"; depth 128 ; unknown ; N/A GL193105.1 samtools variation 354872 354872 . . . alleles " C G"; frequencies " 0.725 0.275"; depth 40 ; unknown ; non-synonymous GL193105.1 samtools variation 360953 360953 . . . alleles " G A"; frequencies " 0.24390243902439 0.75609756097561"; depth 41 ; unknown ; synonymous GL193105.1 samtools variation 373096 373096 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193105.1 samtools variation 373247 373247 . . . alleles " G C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL193105.1 samtools variation 701500 701500 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193105.1 samtools variation 707821 707821 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193105.1 samtools variation 744819 744819 . . . alleles " G A"; frequencies " 0.692874692874693 0.307125307125307"; depth 407 ; unknown ; N/A GL193105.1 samtools variation 746116 746116 . . . alleles " C G"; frequencies " 0.745098039215686 0.254901960784314"; depth 153 ; unknown ; N/A GL193106.1 samtools variation 856556 856556 . . . alleles " C T"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; synonymous GL193106.1 samtools variation 856638 856638 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193106.1 samtools variation 865283 865283 . . . alleles " C G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL193106.1 samtools variation 865660 865660 . . . alleles " G A"; frequencies " 0.482142857142857 0.517857142857143"; depth 56 ; unknown ; N/A GL193106.1 samtools variation 865828 865828 . . . alleles " C T"; frequencies " 0.6625 0.3375"; depth 80 ; unknown ; N/A GL193106.1 samtools variation 865860 865860 . . . alleles " G A"; frequencies " 0.673469387755102 0.326530612244898"; depth 98 ; unknown ; N/A GL193106.1 samtools variation 866575 866575 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193107.1 samtools variation 189628 189628 . . . alleles " G T"; frequencies " 0.548913043478261 0.451086956521739"; depth 184 ; unknown ; non-synonymous GL193107.1 samtools variation 189707 189707 . . . alleles " C T"; frequencies " 0.673913043478261 0.326086956521739"; depth 276 ; known ; non-synonymous GL193107.1 samtools variation 189835 189835 . . . alleles " A G"; frequencies " 0.502304147465438 0.497695852534562"; depth 217 ; known ; non-synonymous GL193107.1 samtools variation 190029 190029 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 240 ; unknown ; synonymous GL193107.1 samtools variation 192257 192257 . . . alleles " G A"; frequencies " 0.309677419354839 0.690322580645161"; depth 155 ; known ; synonymous GL193107.1 samtools variation 193728 193728 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193107.1 samtools variation 195962 195962 . . . alleles " A T"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL193107.1 samtools variation 203266 203266 . . . alleles " G A"; frequencies " 0.530612244897959 0.469387755102041"; depth 147 ; known ; synonymous GL193107.1 samtools variation 204293 204293 . . . alleles " C G"; frequencies " 0.288372093023256 0.711627906976744"; depth 215 ; known ; N/A GL193107.1 samtools variation 206462 206462 . . . alleles " T C"; frequencies " 0.760456273764259 0.239543726235741"; depth 263 ; unknown ; N/A GL193108.1 samtools variation 157724 157724 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193108.1 samtools variation 158412 158412 . . . alleles " T G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193108.1 samtools variation 163118 163118 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL193108.1 samtools variation 172387 172387 . . . alleles " A T"; frequencies " 0.355555555555556 0.644444444444444"; depth 45 ; known ; N/A GL193108.1 samtools variation 173771 173771 . . . alleles " A G"; frequencies " 0.607142857142857 0.392857142857143"; depth 56 ; known ; N/A GL193108.1 samtools variation 337986 337986 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL193108.1 samtools variation 338009 338009 . . . alleles " A G"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; known ; N/A GL193108.1 samtools variation 338055 338055 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193108.1 samtools variation 338874 338874 . . . alleles " T G"; frequencies " 0.685636856368564 0.314363143631436"; depth 369 ; known ; N/A GL193108.1 samtools variation 338949 338949 . . . alleles " G A"; frequencies " 0.721062618595825 0.278937381404175"; depth 527 ; known ; N/A GL193108.1 samtools variation 339228 339228 . . . alleles " G C"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; known ; N/A GL193108.1 samtools variation 339274 339274 . . . alleles " A G"; frequencies " 0.374269005847953 0.625730994152047"; depth 171 ; known ; N/A GL193108.1 samtools variation 339293 339293 . . . alleles " T C"; frequencies " 0.294871794871795 0.705128205128205"; depth 234 ; known ; N/A GL193108.1 samtools variation 339941 339941 . . . alleles " T G"; frequencies " 0.462395543175487 0.537604456824513"; depth 359 ; known ; N/A GL193108.1 samtools variation 339950 339950 . . . alleles " T G"; frequencies " 0.471760797342193 0.524916943521595"; depth 301 ; known ; N/A GL193108.1 samtools variation 340056 340056 . . . alleles " C T"; frequencies " 0.440776699029126 0.559223300970874"; depth 515 ; known ; N/A GL193108.1 samtools variation 340096 340096 . . . alleles " G A"; frequencies " 0.557377049180328 0.442622950819672"; depth 366 ; known ; N/A GL193108.1 samtools variation 340264 340264 . . . alleles " G C"; frequencies " 0.425655976676385 0.574344023323615"; depth 343 ; known ; N/A GL193108.1 samtools variation 340280 340280 . . . alleles " C T"; frequencies " 0.428198433420366 0.571801566579634"; depth 383 ; known ; N/A GL193108.1 samtools variation 340521 340521 . . . alleles " A G"; frequencies " 0.35969387755102 0.64030612244898"; depth 392 ; known ; N/A GL193108.1 samtools variation 340656 340656 . . . alleles " T C"; frequencies " 0.531914893617021 0.468085106382979"; depth 329 ; known ; N/A GL193108.1 samtools variation 340830 340830 . . . alleles " T C"; frequencies " 0.733826247689464 0.266173752310536"; depth 541 ; unknown ; N/A GL193108.1 samtools variation 341215 341215 . . . alleles " T C"; frequencies " 0.629787234042553 0.370212765957447"; depth 235 ; known ; N/A GL193108.1 samtools variation 341853 341853 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 32 ; known ; N/A GL193108.1 samtools variation 342033 342033 . . . alleles " G A"; frequencies " 0.526785714285714 0.473214285714286"; depth 448 ; known ; synonymous GL193108.1 samtools variation 342080 342080 . . . alleles " T C"; frequencies " 0.425742574257426 0.574257425742574"; depth 101 ; known ; N/A GL193108.1 samtools variation 343058 343058 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 57 ; known ; N/A GL193108.1 samtools variation 343112 343112 . . . alleles " T C"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; known ; N/A GL193108.1 samtools variation 343201 343201 . . . alleles " T C"; frequencies " 0.41304347826087 0.58695652173913"; depth 184 ; known ; N/A GL193108.1 samtools variation 343977 343977 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 51 ; known ; N/A GL193108.1 samtools variation 344630 344630 . . . alleles " A T"; frequencies " 0.213333333333333 0.786666666666667"; depth 75 ; known ; N/A GL193108.1 samtools variation 345647 345647 . . . alleles " T C"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; known ; N/A GL193108.1 samtools variation 346488 346488 . . . alleles " C T"; frequencies " 0.522727272727273 0.477272727272727"; depth 44 ; known ; N/A GL193108.1 samtools variation 347871 347871 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 169 ; known ; N/A GL193109.1 samtools variation 920042 920042 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193109.1 samtools variation 920051 920051 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193109.1 samtools variation 921555 921555 . . . alleles " A G"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL193109.1 samtools variation 921761 921761 . . . alleles " T C"; frequencies " 0.62043795620438 0.37956204379562"; depth 137 ; unknown ; N/A GL193109.1 samtools variation 921769 921769 . . . alleles " C T"; frequencies " 0.645161290322581 0.354838709677419"; depth 124 ; unknown ; N/A GL193109.1 samtools variation 923144 923144 . . . alleles " C G"; frequencies " 0.640883977900553 0.359116022099448"; depth 181 ; known ; N/A GL193109.1 samtools variation 923249 923249 . . . alleles " C T"; frequencies " 0.557894736842105 0.442105263157895"; depth 95 ; known ; N/A GL193109.1 samtools variation 923374 923374 . . . alleles " C T"; frequencies " 0.605263157894737 0.394736842105263"; depth 152 ; unknown ; synonymous GL193110.1 samtools variation 2298 2298 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; unknown ; N/A GL193110.1 samtools variation 2338 2338 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL193110.1 samtools variation 2559 2559 . . . alleles " A C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193110.1 samtools variation 2608 2608 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193110.1 samtools variation 2856 2856 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 63 ; unknown ; N/A GL193110.1 samtools variation 2866 2866 . . . alleles " T C"; frequencies " 0.781818181818182 0.218181818181818"; depth 55 ; unknown ; N/A GL193110.1 samtools variation 3100 3100 . . . alleles " C T"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL193110.1 samtools variation 3151 3151 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193110.1 samtools variation 3246 3246 . . . alleles " A C"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL193110.1 samtools variation 3290 3290 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 57 ; unknown ; N/A GL193111.1 samtools variation 200416 200416 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193112.1 samtools variation 270574 270574 . . . alleles " A T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193112.1 samtools variation 318087 318087 . . . alleles " C T"; frequencies " 0.765957446808511 0.234042553191489"; depth 94 ; unknown ; N/A GL193112.1 samtools variation 337345 337345 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193112.1 samtools variation 337596 337596 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193112.1 samtools variation 337794 337794 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193112.1 samtools variation 338047 338047 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL193112.1 samtools variation 339329 339329 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193112.1 samtools variation 339991 339991 . . . alleles " T C"; frequencies " 0.703125 0.296875"; depth 64 ; unknown ; N/A GL193112.1 samtools variation 340596 340596 . . . alleles " G A"; frequencies " 0.370558375634518 0.629441624365482"; depth 197 ; unknown ; synonymous GL193112.1 samtools variation 350545 350545 . . . alleles " C T"; frequencies " 0.314285714285714 0.685714285714286"; depth 35 ; known ; N/A GL193112.1 samtools variation 350607 350607 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 52 ; known ; N/A GL193112.1 samtools variation 351234 351234 . . . alleles " T C"; frequencies " 0.728260869565217 0.271739130434783"; depth 92 ; known ; N/A GL193112.1 samtools variation 351294 351294 . . . alleles " G A"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; unknown ; N/A GL193112.1 samtools variation 351561 351561 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 75 ; known ; N/A GL193112.1 samtools variation 351623 351623 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; known ; N/A GL193112.1 samtools variation 351855 351855 . . . alleles " A G"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; known ; N/A GL193112.1 samtools variation 351860 351860 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; known ; N/A GL193112.1 samtools variation 352373 352373 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 33 ; known ; N/A GL193112.1 samtools variation 352610 352610 . . . alleles " G A"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; unknown ; N/A GL193112.1 samtools variation 352921 352921 . . . alleles " T C"; frequencies " 0.780821917808219 0.219178082191781"; depth 73 ; unknown ; N/A GL193112.1 samtools variation 353063 353063 . . . alleles " G A"; frequencies " 0.780952380952381 0.219047619047619"; depth 105 ; unknown ; N/A GL193112.1 samtools variation 353811 353811 . . . alleles " A G"; frequencies " 0.488888888888889 0.511111111111111"; depth 45 ; unknown ; N/A GL193112.1 samtools variation 354248 354248 . . . alleles " G A"; frequencies " 0.524590163934426 0.475409836065574"; depth 61 ; unknown ; N/A GL193112.1 samtools variation 355252 355252 . . . alleles " C A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193114.1 samtools variation 53695 53695 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193114.1 samtools variation 60193 60193 . . . alleles " G A"; frequencies " 0.614035087719298 0.385964912280702"; depth 57 ; unknown ; N/A GL193114.1 samtools variation 135551 135551 . . . alleles " G A"; frequencies " 0.352941176470588 0.647058823529412"; depth 51 ; unknown ; N/A GL193114.1 samtools variation 135786 135786 . . . alleles " A G"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; unknown ; N/A GL193114.1 samtools variation 154769 154769 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL193114.1 samtools variation 165678 165678 . . . alleles " G A"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL193114.1 samtools variation 176660 176660 . . . alleles " C T"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; non-synonymous GL193114.1 samtools variation 176732 176732 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; non-synonymous GL193114.1 samtools variation 217610 217610 . . . alleles " G A"; frequencies " 0.52027027027027 0.47972972972973"; depth 148 ; unknown ; N/A GL193114.1 samtools variation 217749 217749 . . . alleles " G A"; frequencies " 0.519480519480519 0.480519480519481"; depth 154 ; unknown ; N/A GL193114.1 samtools variation 218037 218037 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193114.1 samtools variation 219008 219008 . . . alleles " G A"; frequencies " 0.540540540540541 0.459459459459459"; depth 74 ; unknown ; N/A GL193114.1 samtools variation 220621 220621 . . . alleles " G C"; frequencies " 0.565656565656566 0.434343434343434"; depth 99 ; unknown ; N/A GL193114.1 samtools variation 220622 220622 . . . alleles " G C"; frequencies " 0.574257425742574 0.425742574257426"; depth 101 ; unknown ; N/A GL193114.1 samtools variation 222035 222035 . . . alleles " C T"; frequencies " 0.604395604395604 0.395604395604396"; depth 91 ; unknown ; N/A GL193114.1 samtools variation 222092 222092 . . . alleles " C T"; frequencies " 0.54320987654321 0.45679012345679"; depth 81 ; unknown ; N/A GL193114.1 samtools variation 222235 222235 . . . alleles " A G"; frequencies " 0.5703125 0.4296875"; depth 384 ; unknown ; N/A GL193114.1 samtools variation 222710 222710 . . . alleles " A G"; frequencies " 0.54014598540146 0.45985401459854"; depth 411 ; unknown ; N/A GL193114.1 samtools variation 222790 222790 . . . alleles " G A"; frequencies " 0.547619047619048 0.452380952380952"; depth 546 ; unknown ; N/A GL193114.1 samtools variation 223348 223348 . . . alleles " A G"; frequencies " 0.463414634146341 0.536585365853659"; depth 943 ; unknown ; non-synonymous GL193114.1 samtools variation 223522 223522 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193114.1 samtools variation 223793 223793 . . . alleles " T C"; frequencies " 0.609756097560976 0.390243902439024"; depth 82 ; unknown ; N/A GL193114.1 samtools variation 223862 223862 . . . alleles " C A"; frequencies " 0.743119266055046 0.256880733944954"; depth 109 ; unknown ; N/A GL193114.1 samtools variation 224080 224080 . . . alleles " T C"; frequencies " 0.664825046040516 0.334561080417434"; depth 1629 ; unknown ; synonymous GL193114.1 samtools variation 227280 227280 . . . alleles " G A"; frequencies " 0.757575757575758 0.232323232323232"; depth 99 ; unknown ; N/A GL193114.1 samtools variation 228553 228553 . . . alleles " G T"; frequencies " 0.611111111111111 0.388888888888889"; depth 72 ; unknown ; N/A GL193114.1 samtools variation 228628 228628 . . . alleles " A G"; frequencies " 0.561151079136691 0.438848920863309"; depth 139 ; unknown ; N/A GL193114.1 samtools variation 228678 228678 . . . alleles " A G"; frequencies " 0.597989949748744 0.396984924623116"; depth 199 ; unknown ; N/A GL193114.1 samtools variation 228696 228696 . . . alleles " C T"; frequencies " 0.6640625 0.3359375"; depth 256 ; unknown ; N/A GL193114.1 samtools variation 228819 228819 . . . alleles " G A"; frequencies " 0.60126582278481 0.39873417721519"; depth 158 ; unknown ; N/A GL193114.1 samtools variation 229015 229015 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 160 ; unknown ; N/A GL193114.1 samtools variation 229022 229022 . . . alleles " C T"; frequencies " 0.652892561983471 0.347107438016529"; depth 121 ; unknown ; N/A GL193114.1 samtools variation 229887 229887 . . . alleles " G C"; frequencies " 0.586750788643533 0.413249211356467"; depth 317 ; unknown ; N/A GL193114.1 samtools variation 230183 230183 . . . alleles " A G"; frequencies " 0.545098039215686 0.454901960784314"; depth 255 ; unknown ; N/A GL193114.1 samtools variation 230472 230472 . . . alleles " A C"; frequencies " 0.644329896907217 0.355670103092784"; depth 194 ; unknown ; N/A GL193114.1 samtools variation 230593 230593 . . . alleles " T C"; frequencies " 0.550561797752809 0.449438202247191"; depth 178 ; unknown ; N/A GL193114.1 samtools variation 231001 231001 . . . alleles " G A"; frequencies " 0.546313799621928 0.453686200378072"; depth 529 ; unknown ; N/A GL193114.1 samtools variation 231349 231349 . . . alleles " T C"; frequencies " 0.252136752136752 0.747863247863248"; depth 234 ; unknown ; N/A GL193114.1 samtools variation 231360 231360 . . . alleles " G A"; frequencies " 0.74537037037037 0.25462962962963"; depth 216 ; unknown ; N/A GL193114.1 samtools variation 231508 231508 . . . alleles " T C"; frequencies " 0.534246575342466 0.465753424657534"; depth 73 ; unknown ; N/A GL193114.1 samtools variation 231874 231874 . . . alleles " G T"; frequencies " 0.429040196882691 0.569319114027892"; depth 1219 ; unknown ; non-synonymous GL193114.1 samtools variation 231992 231992 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 38 ; unknown ; N/A GL193114.1 samtools variation 232082 232082 . . . alleles " G A"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; known ; N/A GL193114.1 samtools variation 232353 232353 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193114.1 samtools variation 233081 233081 . . . alleles " C T"; frequencies " 0.694243232939382 0.304231795653832"; depth 2623 ; unknown ; N/A GL193114.1 samtools variation 285371 285371 . . . alleles " T C"; frequencies " 0.574074074074074 0.425925925925926"; depth 54 ; unknown ; synonymous GL193114.1 samtools variation 285404 285404 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; synonymous GL193114.1 samtools variation 287191 287191 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 50 ; known ; synonymous GL193114.1 samtools variation 288057 288057 . . . alleles " C G"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; non-synonymous GL193114.1 samtools variation 349822 349822 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 16 ; unknown ; non-synonymous GL193114.1 samtools variation 570133 570133 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 35 ; known ; non-synonymous GL193114.1 samtools variation 571040 571040 . . . alleles " C T"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL193114.1 samtools variation 596036 596036 . . . alleles " G T"; frequencies " 0.2 0.8"; depth 30 ; known ; synonymous GL193114.1 samtools variation 601285 601285 . . . alleles " G A"; frequencies " 0.28 0.72"; depth 25 ; known ; N/A GL193114.1 samtools variation 639380 639380 . . . alleles " G C"; frequencies " 0.792307692307692 0.207692307692308"; depth 260 ; unknown ; N/A GL193114.1 samtools variation 642183 642183 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193114.1 samtools variation 660966 660966 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193114.1 samtools variation 662218 662218 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193114.1 samtools variation 666885 666885 . . . alleles " G C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193114.1 samtools variation 668300 668300 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193114.1 samtools variation 668450 668450 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193114.1 samtools variation 668613 668613 . . . alleles " T C"; frequencies " 0.798979591836735 0.201020408163265"; depth 1960 ; unknown ; non-synonymous GL193114.1 samtools variation 670342 670342 . . . alleles " C T"; frequencies " 0.774725274725275 0.225274725274725"; depth 182 ; unknown ; N/A GL193114.1 samtools variation 671035 671035 . . . alleles " G A"; frequencies " 0.788177339901478 0.211822660098522"; depth 203 ; unknown ; N/A GL193114.1 samtools variation 671090 671090 . . . alleles " A G"; frequencies " 0.63921568627451 0.36078431372549"; depth 255 ; unknown ; N/A GL193114.1 samtools variation 671212 671212 . . . alleles " G A"; frequencies " 0.712258064516129 0.287741935483871"; depth 775 ; unknown ; N/A GL193114.1 samtools variation 671574 671574 . . . alleles " T C"; frequencies " 0.794520547945205 0.205479452054795"; depth 219 ; unknown ; N/A GL193114.1 samtools variation 673978 673978 . . . alleles " A G"; frequencies " 0.739628040057225 0.260014306151645"; depth 2796 ; unknown ; synonymous GL193114.1 samtools variation 674087 674087 . . . alleles " T C"; frequencies " 0.78011144449207 0.21988855550793"; depth 2333 ; unknown ; synonymous GL193114.1 samtools variation 676271 676271 . . . alleles " A G"; frequencies " 0.777184280808852 0.222815719191148"; depth 2621 ; unknown ; N/A GL193114.1 samtools variation 676328 676328 . . . alleles " T C"; frequencies " 0.724742268041237 0.274914089347079"; depth 2910 ; unknown ; N/A GL193114.1 samtools variation 676464 676464 . . . alleles " A C"; frequencies " 0.427046263345196 0.572953736654804"; depth 281 ; unknown ; N/A GL193114.1 samtools variation 837059 837059 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193114.1 samtools variation 837189 837189 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193114.1 samtools variation 838444 838444 . . . alleles " T C"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; unknown ; N/A GL193114.1 samtools variation 838569 838569 . . . alleles " T C"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; N/A GL193114.1 samtools variation 839821 839821 . . . alleles " G A"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL193114.1 samtools variation 843367 843367 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; non-synonymous GL193114.1 samtools variation 847117 847117 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; synonymous GL193114.1 samtools variation 858075 858075 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; synonymous GL193115.1 samtools variation 401306 401306 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL193115.1 samtools variation 405967 405967 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL193115.1 samtools variation 408283 408283 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL193115.1 samtools variation 584389 584389 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193117.1 samtools variation 45870 45870 . . . alleles " T A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193117.1 samtools variation 111390 111390 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL193117.1 samtools variation 119769 119769 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 32 ; known ; N/A GL193117.1 samtools variation 133187 133187 . . . alleles " A G"; frequencies " 0.571428571428571 0.4"; depth 35 ; unknown ; non-synonymous GL193117.1 samtools variation 146377 146377 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193117.1 samtools variation 169492 169492 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193117.1 samtools variation 240735 240735 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193117.1 samtools variation 244444 244444 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL193117.1 samtools variation 244460 244460 . . . alleles " A C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL193117.1 samtools variation 245990 245990 . . . alleles " C T"; frequencies " 0.52212389380531 0.47787610619469"; depth 113 ; known ; N/A GL193117.1 samtools variation 246821 246821 . . . alleles " G A"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; N/A GL193117.1 samtools variation 247484 247484 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL193117.1 samtools variation 250422 250422 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193117.1 samtools variation 265519 265519 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; synonymous GL193117.1 samtools variation 279175 279175 . . . alleles " C T"; frequencies " 0.502016129032258 0.497983870967742"; depth 496 ; known ; synonymous GL193117.1 samtools variation 282017 282017 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193117.1 samtools variation 288632 288632 . . . alleles " A G"; frequencies " 0.654545454545455 0.345454545454545"; depth 165 ; unknown ; N/A GL193117.1 samtools variation 288995 288995 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; known ; N/A GL193117.1 samtools variation 289816 289816 . . . alleles " C A"; frequencies " 0.48780487804878 0.51219512195122"; depth 41 ; known ; N/A GL193117.1 samtools variation 293846 293846 . . . alleles " G C"; frequencies " 0.655172413793103 0.344827586206897"; depth 145 ; known ; N/A GL193117.1 samtools variation 293862 293862 . . . alleles " T A"; frequencies " 0.63768115942029 0.36231884057971"; depth 138 ; known ; N/A GL193117.1 samtools variation 295714 295714 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193117.1 samtools variation 295846 295846 . . . alleles " A G"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; known ; N/A GL193117.1 samtools variation 295877 295877 . . . alleles " G T"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; known ; N/A GL193117.1 samtools variation 298321 298321 . . . alleles " C G"; frequencies " 0.233644859813084 0.766355140186916"; depth 214 ; known ; N/A GL193117.1 samtools variation 320367 320367 . . . alleles " G A"; frequencies " 0.32 0.68"; depth 100 ; known ; N/A GL193117.1 samtools variation 327324 327324 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193117.1 samtools variation 331049 331049 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL193117.1 samtools variation 332707 332707 . . . alleles " G A"; frequencies " 0.787234042553192 0.212765957446809"; depth 94 ; known ; N/A GL193117.1 samtools variation 332752 332752 . . . alleles " A C"; frequencies " 0.225 0.775"; depth 80 ; known ; N/A GL193117.1 samtools variation 537146 537146 . . . alleles " T C"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL193117.1 samtools variation 552944 552944 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193117.1 samtools variation 584627 584627 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL193117.1 samtools variation 584717 584717 . . . alleles " C T"; frequencies " 0.78125 0.21875"; depth 32 ; known ; N/A GL193117.1 samtools variation 589398 589398 . . . alleles " C T"; frequencies " 0.725806451612903 0.274193548387097"; depth 62 ; unknown ; N/A GL193117.1 samtools variation 591555 591555 . . . alleles " G C"; frequencies " 0.741379310344828 0.258620689655172"; depth 58 ; unknown ; N/A GL193117.1 samtools variation 611187 611187 . . . alleles " G T"; frequencies " 0.68 0.32"; depth 325 ; unknown ; N/A GL193117.1 samtools variation 611398 611398 . . . alleles " G A"; frequencies " 0.213333333333333 0.786666666666667"; depth 150 ; unknown ; N/A GL193117.1 samtools variation 630086 630086 . . . alleles " A G"; frequencies " 0.74 0.26"; depth 50 ; known ; synonymous GL193117.1 samtools variation 656860 656860 . . . alleles " G A"; frequencies " 0.752577319587629 0.247422680412371"; depth 97 ; unknown ; synonymous GL193117.1 samtools variation 661716 661716 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 32 ; known ; synonymous GL193117.1 samtools variation 667797 667797 . . . alleles " C T"; frequencies " 0.483333333333333 0.516666666666667"; depth 60 ; unknown ; synonymous GL193117.1 samtools variation 669155 669155 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193117.1 samtools variation 669164 669164 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL193117.1 samtools variation 670088 670088 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193117.1 samtools variation 676511 676511 . . . alleles " C T"; frequencies " 0.28 0.72"; depth 25 ; unknown ; synonymous GL193117.1 samtools variation 694016 694016 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 20 ; unknown ; synonymous GL193117.1 samtools variation 695148 695148 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; synonymous GL193118.1 samtools variation 734607 734607 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193118.1 samtools variation 734708 734708 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193118.1 samtools variation 734725 734725 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193119.1 samtools variation 516963 516963 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193120.1 samtools variation 147121 147121 . . . alleles " C T"; frequencies " 0.738461538461539 0.261538461538462"; depth 65 ; unknown ; synonymous GL193120.1 samtools variation 147322 147322 . . . alleles " A G"; frequencies " 0.518867924528302 0.481132075471698"; depth 106 ; unknown ; synonymous GL193120.1 samtools variation 147431 147431 . . . alleles " C T"; frequencies " 0.513157894736842 0.486842105263158"; depth 76 ; unknown ; non-synonymous GL193120.1 samtools variation 155748 155748 . . . alleles " G T"; frequencies " 0.440677966101695 0.559322033898305"; depth 59 ; unknown ; N/A GL193120.1 samtools variation 294901 294901 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 63 ; unknown ; synonymous GL193120.1 samtools variation 866247 866247 . . . alleles " C T"; frequencies " 0.633333333333333 0.366666666666667"; depth 90 ; unknown ; N/A GL193120.1 samtools variation 867384 867384 . . . alleles " C G"; frequencies " 0.51063829787234 0.48936170212766"; depth 47 ; unknown ; N/A GL193120.1 samtools variation 869898 869898 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; synonymous GL193121.1 samtools variation 289178 289178 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL193121.1 samtools variation 291822 291822 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL193121.1 samtools variation 790868 790868 . . . alleles " A C"; frequencies " 0.793103448275862 0.206896551724138"; depth 87 ; known ; N/A GL193121.1 samtools variation 792751 792751 . . . alleles " G A"; frequencies " 0.611764705882353 0.388235294117647"; depth 85 ; known ; N/A GL193122.1 samtools variation 284896 284896 . . . alleles " A T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL193122.1 samtools variation 285065 285065 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193122.1 samtools variation 434505 434505 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL193122.1 samtools variation 434885 434885 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193122.1 samtools variation 434901 434901 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193122.1 samtools variation 510831 510831 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; unknown ; synonymous GL193122.1 samtools variation 572601 572601 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL193122.1 samtools variation 573840 573840 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193122.1 samtools variation 583681 583681 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193123.1 samtools variation 85207 85207 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 56 ; unknown ; non-synonymous GL193123.1 samtools variation 953842 953842 . . . alleles " C G"; frequencies " 0.276315789473684 0.723684210526316"; depth 76 ; unknown ; non-synonymous GL193123.1 samtools variation 959040 959040 . . . alleles " G A"; frequencies " 0.576271186440678 0.423728813559322"; depth 59 ; unknown ; synonymous GL193124.1 samtools variation 12744 12744 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193124.1 samtools variation 127659 127659 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; synonymous GL193124.1 samtools variation 210426 210426 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL193124.1 samtools variation 216713 216713 . . . alleles " C T"; frequencies " 0.30952380952381 0.69047619047619"; depth 42 ; unknown ; N/A GL193124.1 samtools variation 252920 252920 . . . alleles " G A"; frequencies " 0.298507462686567 0.701492537313433"; depth 67 ; unknown ; N/A GL193124.1 samtools variation 253288 253288 . . . alleles " C T"; frequencies " 0.256410256410256 0.743589743589744"; depth 78 ; unknown ; N/A GL193124.1 samtools variation 278174 278174 . . . alleles " G A"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; unknown ; N/A GL193124.1 samtools variation 278272 278272 . . . alleles " C A"; frequencies " 0.306122448979592 0.693877551020408"; depth 49 ; unknown ; N/A GL193124.1 samtools variation 279064 279064 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 66 ; unknown ; synonymous GL193124.1 samtools variation 280145 280145 . . . alleles " G A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; synonymous GL193124.1 samtools variation 327195 327195 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL193124.1 samtools variation 330046 330046 . . . alleles " G C"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL193124.1 samtools variation 339670 339670 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193124.1 samtools variation 360017 360017 . . . alleles " A G"; frequencies " 0.270833333333333 0.729166666666667"; depth 48 ; known ; N/A GL193124.1 samtools variation 372721 372721 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193124.1 samtools variation 379314 379314 . . . alleles " C A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193124.1 samtools variation 390987 390987 . . . alleles " C T"; frequencies " 0.769480519480519 0.230519480519481"; depth 308 ; unknown ; non-synonymous GL193124.1 samtools variation 400314 400314 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193124.1 samtools variation 436130 436130 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 56 ; known ; N/A GL193124.1 samtools variation 529515 529515 . . . alleles " T C"; frequencies " 0.791061452513967 0.208938547486034"; depth 895 ; unknown ; non-synonymous GL193124.1 samtools variation 531275 531275 . . . alleles " G A"; frequencies " 0.774193548387097 0.225806451612903"; depth 93 ; unknown ; synonymous GL193124.1 samtools variation 628791 628791 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193124.1 samtools variation 634493 634493 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; synonymous GL193124.1 samtools variation 635956 635956 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193124.1 samtools variation 655512 655512 . . . alleles " G C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193124.1 samtools variation 661578 661578 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193124.1 samtools variation 661898 661898 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193124.1 samtools variation 671625 671625 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193124.1 samtools variation 672818 672818 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193124.1 samtools variation 672929 672929 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL193124.1 samtools variation 802048 802048 . . . alleles " A G"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; N/A GL193124.1 samtools variation 802901 802901 . . . alleles " G T"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL193124.1 samtools variation 950045 950045 . . . alleles " C A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193125.1 samtools variation 901436 901436 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL193125.1 samtools variation 903374 903374 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 51 ; unknown ; N/A GL193126.1 samtools variation 333287 333287 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193126.1 samtools variation 336939 336939 . . . alleles " T C"; frequencies " 0.759493670886076 0.240506329113924"; depth 158 ; unknown ; N/A GL193126.1 samtools variation 340081 340081 . . . alleles " C G"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193126.1 samtools variation 341485 341485 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193126.1 samtools variation 396652 396652 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193126.1 samtools variation 398770 398770 . . . alleles " C T"; frequencies " 0.465116279069767 0.534883720930233"; depth 86 ; known ; synonymous GL193126.1 samtools variation 483141 483141 . . . alleles " G C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL193126.1 samtools variation 489764 489764 . . . alleles " A G"; frequencies " 0.53968253968254 0.46031746031746"; depth 63 ; known ; non-synonymous GL193126.1 samtools variation 539176 539176 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193127.1 samtools variation 105944 105944 . . . alleles " A T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193127.1 samtools variation 110897 110897 . . . alleles " A G"; frequencies " 0.634920634920635 0.365079365079365"; depth 63 ; unknown ; N/A GL193127.1 samtools variation 110984 110984 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; unknown ; N/A GL193127.1 samtools variation 114999 114999 . . . alleles " G A"; frequencies " 0.63013698630137 0.36986301369863"; depth 73 ; unknown ; N/A GL193127.1 samtools variation 119453 119453 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; unknown ; N/A GL193127.1 samtools variation 124015 124015 . . . alleles " A G"; frequencies " 0.767441860465116 0.232558139534884"; depth 129 ; unknown ; N/A GL193127.1 samtools variation 124151 124151 . . . alleles " C T"; frequencies " 0.761194029850746 0.238805970149254"; depth 67 ; unknown ; N/A GL193127.1 samtools variation 124191 124191 . . . alleles " C G"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL193127.1 samtools variation 125483 125483 . . . alleles " T C"; frequencies " 0.605633802816901 0.394366197183099"; depth 71 ; unknown ; N/A GL193127.1 samtools variation 134656 134656 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 100 ; unknown ; N/A GL193127.1 samtools variation 137198 137198 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 39 ; unknown ; N/A GL193127.1 samtools variation 139439 139439 . . . alleles " C T"; frequencies " 0.58 0.42"; depth 50 ; known ; N/A GL193127.1 samtools variation 140002 140002 . . . alleles " C T"; frequencies " 0.644444444444444 0.355555555555556"; depth 45 ; known ; N/A GL193127.1 samtools variation 140410 140410 . . . alleles " G A"; frequencies " 0.616438356164384 0.383561643835616"; depth 73 ; unknown ; N/A GL193127.1 samtools variation 144891 144891 . . . alleles " A G"; frequencies " 0.627450980392157 0.372549019607843"; depth 102 ; known ; synonymous GL193127.1 samtools variation 155940 155940 . . . alleles " C A"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL193127.1 samtools variation 155941 155941 . . . alleles " C G"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL193127.1 samtools variation 157469 157469 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193127.1 samtools variation 159190 159190 . . . alleles " T C"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; known ; N/A GL193127.1 samtools variation 190652 190652 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; synonymous GL193127.1 samtools variation 190730 190730 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; known ; synonymous GL193127.1 samtools variation 190790 190790 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; known ; synonymous GL193127.1 samtools variation 191653 191653 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL193127.1 samtools variation 191709 191709 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193127.1 samtools variation 192639 192639 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193127.1 samtools variation 193309 193309 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL193127.1 samtools variation 271243 271243 . . . alleles " T C"; frequencies " 0.33125 0.66875"; depth 160 ; known ; N/A GL193127.1 samtools variation 272508 272508 . . . alleles " G A"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; unknown ; N/A GL193127.1 samtools variation 272509 272509 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 48 ; unknown ; N/A GL193127.1 samtools variation 272608 272608 . . . alleles " C T"; frequencies " 0.718446601941748 0.281553398058252"; depth 103 ; unknown ; N/A GL193127.1 samtools variation 275102 275102 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193127.1 samtools variation 382952 382952 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 60 ; known ; non-synonymous GL193127.1 samtools variation 417961 417961 . . . alleles " C T"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL193127.1 samtools variation 418066 418066 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193127.1 samtools variation 421932 421932 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193127.1 samtools variation 426735 426735 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193127.1 samtools variation 467012 467012 . . . alleles " T C"; frequencies " 0.244897959183673 0.755102040816326"; depth 49 ; known ; N/A GL193127.1 samtools variation 467515 467515 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL193127.1 samtools variation 547106 547106 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193127.1 samtools variation 547230 547230 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193127.1 samtools variation 641194 641194 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; N/A GL193127.1 samtools variation 770596 770596 . . . alleles " A G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL193127.1 samtools variation 770750 770750 . . . alleles " T C"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; unknown ; N/A GL193127.1 samtools variation 770833 770833 . . . alleles " T G"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; unknown ; N/A GL193127.1 samtools variation 774313 774313 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193127.1 samtools variation 776010 776010 . . . alleles " T C"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL193127.1 samtools variation 818608 818608 . . . alleles " G T"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193127.1 samtools variation 844593 844593 . . . alleles " A G"; frequencies " 0.409836065573771 0.590163934426229"; depth 61 ; unknown ; synonymous GL193127.1 samtools variation 847714 847714 . . . alleles " G C"; frequencies " 0.356687898089172 0.643312101910828"; depth 157 ; unknown ; N/A GL193128.1 samtools variation 145179 145179 . . . alleles " A C"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL193128.1 samtools variation 145558 145558 . . . alleles " A C"; frequencies " 0.307086614173228 0.692913385826772"; depth 127 ; unknown ; non-synonymous GL193128.1 samtools variation 168831 168831 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193128.1 samtools variation 473213 473213 . . . alleles " A T"; frequencies " 0.244444444444444 0.755555555555556"; depth 90 ; unknown ; N/A GL193130.1 samtools variation 670865 670865 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL193131.1 samtools variation 36923 36923 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL193131.1 samtools variation 316986 316986 . . . alleles " T C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL193131.1 samtools variation 327073 327073 . . . alleles " A C"; frequencies " 0.645833333333333 0.354166666666667"; depth 96 ; unknown ; non-synonymous GL193131.1 samtools variation 327264 327264 . . . alleles " A G"; frequencies " 0.617021276595745 0.382978723404255"; depth 47 ; unknown ; non-synonymous GL193131.1 samtools variation 327285 327285 . . . alleles " T C"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; non-synonymous GL193131.1 samtools variation 327349 327349 . . . alleles " T G"; frequencies " 0.754098360655738 0.245901639344262"; depth 61 ; unknown ; non-synonymous GL193131.1 samtools variation 327927 327927 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 44 ; unknown ; non-synonymous GL193131.1 samtools variation 327930 327930 . . . alleles " T C"; frequencies " 0.744186046511628 0.255813953488372"; depth 43 ; unknown ; non-synonymous GL193131.1 samtools variation 329505 329505 . . . alleles " C T"; frequencies " 0.74468085106383 0.25531914893617"; depth 47 ; unknown ; synonymous GL193131.1 samtools variation 881277 881277 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193132.1 samtools variation 669878 669878 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193134.1 samtools variation 59925 59925 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL193134.1 samtools variation 61260 61260 . . . alleles " T C"; frequencies " 0.766666666666667 0.2"; depth 30 ; known ; N/A GL193134.1 samtools variation 61487 61487 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193134.1 samtools variation 61691 61691 . . . alleles " C T"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL193134.1 samtools variation 62039 62039 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193134.1 samtools variation 62371 62371 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL193134.1 samtools variation 66193 66193 . . . alleles " A G"; frequencies " 0.566666666666667 0.433333333333333"; depth 60 ; known ; synonymous GL193134.1 samtools variation 66553 66553 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 40 ; known ; synonymous GL193134.1 samtools variation 66713 66713 . . . alleles " A G"; frequencies " 0.490909090909091 0.509090909090909"; depth 55 ; known ; non-synonymous GL193134.1 samtools variation 67088 67088 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; known ; non-synonymous GL193134.1 samtools variation 71130 71130 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; known ; non-synonymous GL193134.1 samtools variation 80962 80962 . . . alleles " G A"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; known ; N/A GL193134.1 samtools variation 159685 159685 . . . alleles " T A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL193134.1 samtools variation 160421 160421 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL193134.1 samtools variation 160621 160621 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 50 ; known ; N/A GL193134.1 samtools variation 160751 160751 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 52 ; known ; N/A GL193134.1 samtools variation 160772 160772 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 24 ; known ; N/A GL193134.1 samtools variation 160918 160918 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL193134.1 samtools variation 161834 161834 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL193134.1 samtools variation 162754 162754 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL193134.1 samtools variation 232361 232361 . . . alleles " G A"; frequencies " 0.469135802469136 0.530864197530864"; depth 81 ; known ; N/A GL193134.1 samtools variation 233224 233224 . . . alleles " A G"; frequencies " 0.595238095238095 0.404761904761905"; depth 42 ; known ; N/A GL193134.1 samtools variation 249851 249851 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193134.1 samtools variation 250331 250331 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193134.1 samtools variation 262848 262848 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 42 ; known ; N/A GL193134.1 samtools variation 495460 495460 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193134.1 samtools variation 767160 767160 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193134.1 samtools variation 824180 824180 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL193134.1 samtools variation 828570 828570 . . . alleles " G A"; frequencies " 0.59375 0.40625"; depth 32 ; known ; N/A GL193134.1 samtools variation 828651 828651 . . . alleles " T C"; frequencies " 0.44 0.56"; depth 25 ; known ; N/A GL193134.1 samtools variation 830664 830664 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193134.1 samtools variation 842793 842793 . . . alleles " A G"; frequencies " 0.67910447761194 0.32089552238806"; depth 134 ; known ; N/A GL193134.1 samtools variation 883571 883571 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193134.1 samtools variation 914445 914445 . . . alleles " C A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL193134.1 samtools variation 916019 916019 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193134.1 samtools variation 916071 916071 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193134.1 samtools variation 916179 916179 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL193134.1 samtools variation 916195 916195 . . . alleles " G C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL193134.1 samtools variation 916398 916398 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL193134.1 samtools variation 916483 916483 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 28 ; known ; N/A GL193134.1 samtools variation 942296 942296 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL193134.1 samtools variation 942399 942399 . . . alleles " C T"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL193135.1 samtools variation 127199 127199 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL193135.1 samtools variation 132507 132507 . . . alleles " T C"; frequencies " 0.295454545454545 0.704545454545455"; depth 44 ; unknown ; N/A GL193135.1 samtools variation 285460 285460 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193135.1 samtools variation 323808 323808 . . . alleles " C T"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL193135.1 samtools variation 580752 580752 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 102 ; known ; synonymous GL193135.1 samtools variation 602121 602121 . . . alleles " T C"; frequencies " 0.293333333333333 0.706666666666667"; depth 150 ; unknown ; N/A GL193136.1 samtools variation 533160 533160 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 32 ; known ; synonymous GL193136.1 samtools variation 533623 533623 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 40 ; known ; non-synonymous GL193136.1 samtools variation 552265 552265 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 52 ; unknown ; N/A GL193136.1 samtools variation 557509 557509 . . . alleles " G A"; frequencies " 0.682539682539683 0.317460317460317"; depth 63 ; unknown ; N/A GL193136.1 samtools variation 734420 734420 . . . alleles " T C"; frequencies " 0.65979381443299 0.34020618556701"; depth 194 ; known ; N/A GL193136.1 samtools variation 734494 734494 . . . alleles " G A"; frequencies " 0.694915254237288 0.305084745762712"; depth 118 ; known ; N/A GL193136.1 samtools variation 745187 745187 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 25 ; unknown ; synonymous GL193138.1 samtools variation 188220 188220 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; synonymous GL193138.1 samtools variation 265931 265931 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 34 ; unknown ; N/A GL193138.1 samtools variation 282673 282673 . . . alleles " A G"; frequencies " 0.327044025157233 0.672955974842767"; depth 318 ; unknown ; N/A GL193138.1 samtools variation 283113 283113 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 561 ; unknown ; N/A GL193138.1 samtools variation 288101 288101 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL193138.1 samtools variation 288167 288167 . . . alleles " G A"; frequencies " 0.465116279069767 0.534883720930233"; depth 43 ; unknown ; N/A GL193138.1 samtools variation 289299 289299 . . . alleles " G T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193138.1 samtools variation 290360 290360 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193138.1 samtools variation 290392 290392 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193138.1 samtools variation 326444 326444 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 95 ; unknown ; N/A GL193138.1 samtools variation 327018 327018 . . . alleles " G T"; frequencies " 0.653846153846154 0.346153846153846"; depth 104 ; unknown ; N/A GL193138.1 samtools variation 327109 327109 . . . alleles " C T"; frequencies " 0.710144927536232 0.289855072463768"; depth 69 ; unknown ; N/A GL193138.1 samtools variation 327204 327204 . . . alleles " C T"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL193138.1 samtools variation 329214 329214 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; synonymous GL193138.1 samtools variation 369835 369835 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193138.1 samtools variation 370915 370915 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193138.1 samtools variation 876465 876465 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193139.1 samtools variation 71017 71017 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; synonymous GL193139.1 samtools variation 156614 156614 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; synonymous GL193139.1 samtools variation 674052 674052 . . . alleles " T A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193139.1 samtools variation 674273 674273 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193139.1 samtools variation 674632 674632 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193139.1 samtools variation 678694 678694 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193139.1 samtools variation 681818 681818 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL193139.1 samtools variation 683993 683993 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193139.1 samtools variation 687369 687369 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193139.1 samtools variation 687897 687897 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL193139.1 samtools variation 688412 688412 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193139.1 samtools variation 693796 693796 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193139.1 samtools variation 695529 695529 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193139.1 samtools variation 695543 695543 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193139.1 samtools variation 695664 695664 . . . alleles " G C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL193139.1 samtools variation 695669 695669 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL193139.1 samtools variation 695777 695777 . . . alleles " A G"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL193139.1 samtools variation 778632 778632 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 55 ; known ; N/A GL193139.1 samtools variation 780778 780778 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193139.1 samtools variation 782950 782950 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193139.1 samtools variation 884394 884394 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; known ; N/A GL193140.1 samtools variation 50881 50881 . . . alleles " G A"; frequencies " 0.367469879518072 0.632530120481928"; depth 166 ; unknown ; synonymous GL193140.1 samtools variation 52793 52793 . . . alleles " A G"; frequencies " 0.434782608695652 0.565217391304348"; depth 46 ; unknown ; N/A GL193140.1 samtools variation 52898 52898 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL193140.1 samtools variation 52937 52937 . . . alleles " A G"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL193140.1 samtools variation 53026 53026 . . . alleles " T C"; frequencies " 0.430769230769231 0.569230769230769"; depth 65 ; unknown ; N/A GL193140.1 samtools variation 53049 53049 . . . alleles " G A"; frequencies " 0.366666666666667 0.633333333333333"; depth 60 ; unknown ; N/A GL193140.1 samtools variation 53431 53431 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193140.1 samtools variation 53446 53446 . . . alleles " C A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193140.1 samtools variation 54952 54952 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193140.1 samtools variation 57004 57004 . . . alleles " G A"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL193140.1 samtools variation 57078 57078 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193140.1 samtools variation 59584 59584 . . . alleles " C T"; frequencies " 0.788079470198676 0.211920529801325"; depth 302 ; known ; N/A GL193140.1 samtools variation 59658 59658 . . . alleles " G C"; frequencies " 0.663755458515284 0.336244541484716"; depth 229 ; known ; N/A GL193140.1 samtools variation 59703 59703 . . . alleles " T C"; frequencies " 0.514285714285714 0.485714285714286"; depth 245 ; unknown ; N/A GL193140.1 samtools variation 105676 105676 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193140.1 samtools variation 136690 136690 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; synonymous GL193140.1 samtools variation 136942 136942 . . . alleles " A C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; synonymous GL193140.1 samtools variation 473582 473582 . . . alleles " A G"; frequencies " 0.711538461538462 0.288461538461538"; depth 52 ; known ; N/A GL193140.1 samtools variation 484336 484336 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193140.1 samtools variation 524438 524438 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL193140.1 samtools variation 525813 525813 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL193140.1 samtools variation 548168 548168 . . . alleles " G A"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; synonymous GL193140.1 samtools variation 548174 548174 . . . alleles " T C"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; synonymous GL193140.1 samtools variation 548396 548396 . . . alleles " A G"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; unknown ; synonymous GL193140.1 samtools variation 653246 653246 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193140.1 samtools variation 653451 653451 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193140.1 samtools variation 653966 653966 . . . alleles " T G"; frequencies " 0.728571428571429 0.271428571428571"; depth 70 ; known ; N/A GL193140.1 samtools variation 655899 655899 . . . alleles " C T"; frequencies " 0.527027027027027 0.472972972972973"; depth 74 ; known ; synonymous GL193140.1 samtools variation 660427 660427 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193140.1 samtools variation 736294 736294 . . . alleles " T C"; frequencies " 0.766666666666667 0.233333333333333"; depth 60 ; known ; synonymous GL193140.1 samtools variation 736873 736873 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 51 ; known ; synonymous GL193140.1 samtools variation 738082 738082 . . . alleles " T C"; frequencies " 0.211111111111111 0.788888888888889"; depth 90 ; known ; synonymous GL193140.1 samtools variation 738181 738181 . . . alleles " C T"; frequencies " 0.79047619047619 0.20952380952381"; depth 105 ; known ; synonymous GL193142.1 samtools variation 218946 218946 . . . alleles " C G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; synonymous GL193142.1 samtools variation 245069 245069 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193142.1 samtools variation 245300 245300 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193142.1 samtools variation 245353 245353 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL193142.1 samtools variation 245441 245441 . . . alleles " T G"; frequencies " 0.2 0.8"; depth 40 ; known ; N/A GL193142.1 samtools variation 246449 246449 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193142.1 samtools variation 247905 247905 . . . alleles " G A"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL193142.1 samtools variation 248174 248174 . . . alleles " T C"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL193142.1 samtools variation 248576 248576 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193142.1 samtools variation 248820 248820 . . . alleles " T G"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; known ; N/A GL193142.1 samtools variation 249039 249039 . . . alleles " C T"; frequencies " 0.28 0.72"; depth 25 ; known ; N/A GL193142.1 samtools variation 249169 249169 . . . alleles " G T"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193142.1 samtools variation 249539 249539 . . . alleles " T C"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; known ; N/A GL193142.1 samtools variation 249917 249917 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193142.1 samtools variation 251883 251883 . . . alleles " T C"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL193142.1 samtools variation 252019 252019 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193142.1 samtools variation 252029 252029 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193142.1 samtools variation 269773 269773 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL193142.1 samtools variation 281106 281106 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193142.1 samtools variation 281233 281233 . . . alleles " A C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193142.1 samtools variation 281294 281294 . . . alleles " T C"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL193142.1 samtools variation 281314 281314 . . . alleles " A G"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; known ; N/A GL193142.1 samtools variation 281372 281372 . . . alleles " A G"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL193142.1 samtools variation 281568 281568 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL193142.1 samtools variation 281831 281831 . . . alleles " C T"; frequencies " 0.34 0.66"; depth 50 ; known ; N/A GL193142.1 samtools variation 285982 285982 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193142.1 samtools variation 285991 285991 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193142.1 samtools variation 286407 286407 . . . alleles " G A"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; known ; N/A GL193142.1 samtools variation 288667 288667 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193142.1 samtools variation 288668 288668 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193142.1 samtools variation 314909 314909 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193142.1 samtools variation 321654 321654 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 36 ; known ; synonymous GL193142.1 samtools variation 321904 321904 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 63 ; unknown ; non-synonymous GL193142.1 samtools variation 322114 322114 . . . alleles " G A"; frequencies " 0.680555555555556 0.319444444444444"; depth 72 ; unknown ; non-synonymous GL193142.1 samtools variation 322441 322441 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 50 ; unknown ; non-synonymous GL193142.1 samtools variation 325020 325020 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; synonymous GL193142.1 samtools variation 325041 325041 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; synonymous GL193142.1 samtools variation 346383 346383 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193142.1 samtools variation 369860 369860 . . . alleles " T G"; frequencies " 0.303030303030303 0.696969696969697"; depth 33 ; known ; N/A GL193142.1 samtools variation 386099 386099 . . . alleles " G A"; frequencies " 0.67175572519084 0.32824427480916"; depth 131 ; known ; synonymous GL193142.1 samtools variation 389352 389352 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 42 ; unknown ; non-synonymous GL193142.1 samtools variation 389375 389375 . . . alleles " G A"; frequencies " 0.391304347826087 0.608695652173913"; depth 46 ; unknown ; synonymous GL193142.1 samtools variation 389530 389530 . . . alleles " C T"; frequencies " 0.261538461538462 0.738461538461539"; depth 65 ; unknown ; non-synonymous GL193142.1 samtools variation 389667 389667 . . . alleles " T C"; frequencies " 0.622950819672131 0.377049180327869"; depth 61 ; unknown ; non-synonymous GL193142.1 samtools variation 389699 389699 . . . alleles " G A"; frequencies " 0.764044943820225 0.235955056179775"; depth 89 ; unknown ; synonymous GL193142.1 samtools variation 389710 389710 . . . alleles " A G"; frequencies " 0.367816091954023 0.632183908045977"; depth 87 ; unknown ; non-synonymous GL193142.1 samtools variation 390027 390027 . . . alleles " A G"; frequencies " 0.326315789473684 0.673684210526316"; depth 95 ; unknown ; non-synonymous GL193142.1 samtools variation 390240 390240 . . . alleles " G A"; frequencies " 0.425 0.575"; depth 80 ; unknown ; non-synonymous GL193142.1 samtools variation 541385 541385 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193142.1 samtools variation 591878 591878 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; synonymous GL193142.1 samtools variation 618539 618539 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; known ; synonymous GL193142.1 samtools variation 618893 618893 . . . alleles " G A"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; known ; synonymous GL193142.1 samtools variation 619307 619307 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; synonymous GL193142.1 samtools variation 619718 619718 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; synonymous GL193142.1 samtools variation 628646 628646 . . . alleles " G A"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL193142.1 samtools variation 629455 629455 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL193142.1 samtools variation 631728 631728 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 54 ; known ; N/A GL193142.1 samtools variation 631893 631893 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL193142.1 samtools variation 632948 632948 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; known ; N/A GL193142.1 samtools variation 773426 773426 . . . alleles " T G"; frequencies " 0.523809523809524 0.476190476190476"; depth 105 ; known ; N/A GL193142.1 samtools variation 775114 775114 . . . alleles " C T"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; N/A GL193142.1 samtools variation 791561 791561 . . . alleles " A G"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; known ; synonymous GL193142.1 samtools variation 802867 802867 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 39 ; known ; synonymous GL193142.1 samtools variation 838200 838200 . . . alleles " G A"; frequencies " 0.346938775510204 0.650793650793651"; depth 441 ; known ; N/A GL193142.1 samtools variation 840340 840340 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193142.1 samtools variation 843118 843118 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193142.1 samtools variation 843203 843203 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193142.1 samtools variation 844562 844562 . . . alleles " C T"; frequencies " 0.70479704797048 0.29520295202952"; depth 271 ; unknown ; non-synonymous GL193142.1 samtools variation 850015 850015 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193142.1 samtools variation 851623 851623 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193142.1 samtools variation 853169 853169 . . . alleles " A T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193142.1 samtools variation 853222 853222 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193142.1 samtools variation 853698 853698 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193142.1 samtools variation 873703 873703 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL193142.1 samtools variation 873747 873747 . . . alleles " T C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL193142.1 samtools variation 874466 874466 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193142.1 samtools variation 876144 876144 . . . alleles " A C"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL193142.1 samtools variation 901007 901007 . . . alleles " G A"; frequencies " 0.313304721030043 0.686695278969957"; depth 233 ; known ; N/A GL193142.1 samtools variation 902030 902030 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL193142.1 samtools variation 902301 902301 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193142.1 samtools variation 905826 905826 . . . alleles " T A"; frequencies " 0.210526315789474 0.789473684210526"; depth 171 ; known ; synonymous GL193142.1 samtools variation 906697 906697 . . . alleles " C A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193142.1 samtools variation 907288 907288 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193142.1 samtools variation 907859 907859 . . . alleles " A C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193142.1 samtools variation 908698 908698 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193142.1 samtools variation 908788 908788 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193142.1 samtools variation 909130 909130 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193142.1 samtools variation 909222 909222 . . . alleles " T C"; frequencies " 0.709876543209877 0.290123456790123"; depth 162 ; unknown ; non-synonymous GL193142.1 samtools variation 910140 910140 . . . alleles " A G"; frequencies " 0.242937853107345 0.751412429378531"; depth 177 ; unknown ; non-synonymous GL193142.1 samtools variation 910237 910237 . . . alleles " G A"; frequencies " 0.316205533596838 0.683794466403162"; depth 253 ; unknown ; synonymous GL193142.1 samtools variation 910273 910273 . . . alleles " G C"; frequencies " 0.350467289719626 0.649532710280374"; depth 214 ; unknown ; synonymous GL193142.1 samtools variation 911084 911084 . . . alleles " A G"; frequencies " 0.482142857142857 0.517857142857143"; depth 56 ; unknown ; synonymous GL193142.1 samtools variation 911894 911894 . . . alleles " G A"; frequencies " 0.435483870967742 0.564516129032258"; depth 62 ; unknown ; synonymous GL193142.1 samtools variation 911979 911979 . . . alleles " A G"; frequencies " 0.716981132075472 0.283018867924528"; depth 53 ; unknown ; synonymous GL193142.1 samtools variation 945254 945254 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193142.1 samtools variation 945486 945486 . . . alleles " T G"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL193143.1 samtools variation 42116 42116 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193143.1 samtools variation 50203 50203 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; non-synonymous GL193143.1 samtools variation 88959 88959 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 25 ; unknown ; synonymous GL193143.1 samtools variation 91551 91551 . . . alleles " G T"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; known ; N/A GL193143.1 samtools variation 103574 103574 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193143.1 samtools variation 105338 105338 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL193143.1 samtools variation 108836 108836 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193143.1 samtools variation 218466 218466 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193143.1 samtools variation 227928 227928 . . . alleles " A G"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; non-synonymous GL193143.1 samtools variation 227992 227992 . . . alleles " T G"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; known ; synonymous GL193143.1 samtools variation 229466 229466 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; synonymous GL193143.1 samtools variation 231850 231850 . . . alleles " T C"; frequencies " 0.383838383838384 0.616161616161616"; depth 99 ; known ; N/A GL193143.1 samtools variation 233451 233451 . . . alleles " A G"; frequencies " 0.294736842105263 0.705263157894737"; depth 95 ; known ; N/A GL193143.1 samtools variation 234791 234791 . . . alleles " G T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193143.1 samtools variation 251996 251996 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193143.1 samtools variation 314561 314561 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 25 ; known ; N/A GL193143.1 samtools variation 315104 315104 . . . alleles " T C"; frequencies " 0.719251336898396 0.280748663101604"; depth 374 ; unknown ; non-synonymous GL193143.1 samtools variation 317781 317781 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193143.1 samtools variation 320437 320437 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193143.1 samtools variation 335883 335883 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL193143.1 samtools variation 361258 361258 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193143.1 samtools variation 366465 366465 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193143.1 samtools variation 649381 649381 . . . alleles " C T"; frequencies " 0.344827586206897 0.655172413793103"; depth 58 ; unknown ; N/A GL193143.1 samtools variation 649490 649490 . . . alleles " C T"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; unknown ; N/A GL193143.1 samtools variation 649524 649524 . . . alleles " T G"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL193143.1 samtools variation 651845 651845 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 46 ; unknown ; N/A GL193143.1 samtools variation 652104 652104 . . . alleles " G A"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193143.1 samtools variation 656075 656075 . . . alleles " G A"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL193143.1 samtools variation 656230 656230 . . . alleles " A C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193143.1 samtools variation 656430 656430 . . . alleles " A T"; frequencies " 0.233333333333333 0.766666666666667"; depth 30 ; unknown ; N/A GL193143.1 samtools variation 657748 657748 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 68 ; unknown ; N/A GL193143.1 samtools variation 664251 664251 . . . alleles " C T"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; N/A GL193143.1 samtools variation 670510 670510 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193143.1 samtools variation 672328 672328 . . . alleles " A T"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL193143.1 samtools variation 672611 672611 . . . alleles " T A"; frequencies " 0.348837209302326 0.651162790697674"; depth 43 ; unknown ; N/A GL193143.1 samtools variation 678811 678811 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL193143.1 samtools variation 679297 679297 . . . alleles " A C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193143.1 samtools variation 679455 679455 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 28 ; known ; N/A GL193143.1 samtools variation 681916 681916 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL193143.1 samtools variation 682726 682726 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL193143.1 samtools variation 683121 683121 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL193143.1 samtools variation 683308 683308 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193143.1 samtools variation 687445 687445 . . . alleles " C T"; frequencies " 0.584415584415584 0.415584415584416"; depth 77 ; unknown ; N/A GL193143.1 samtools variation 687461 687461 . . . alleles " A G"; frequencies " 0.507692307692308 0.492307692307692"; depth 65 ; unknown ; N/A GL193143.1 samtools variation 687688 687688 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; unknown ; N/A GL193143.1 samtools variation 687757 687757 . . . alleles " A G"; frequencies " 0.432432432432432 0.567567567567568"; depth 37 ; unknown ; N/A GL193143.1 samtools variation 687935 687935 . . . alleles " G C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193143.1 samtools variation 688288 688288 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 32 ; unknown ; N/A GL193143.1 samtools variation 689474 689474 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193143.1 samtools variation 689896 689896 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 34 ; unknown ; N/A GL193143.1 samtools variation 693309 693309 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193143.1 samtools variation 699728 699728 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193143.1 samtools variation 700954 700954 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL193143.1 samtools variation 701909 701909 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193143.1 samtools variation 704938 704938 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; unknown ; N/A GL193143.1 samtools variation 704939 704939 . . . alleles " G A"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL193143.1 samtools variation 705532 705532 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193143.1 samtools variation 710652 710652 . . . alleles " G A"; frequencies " 0.295238095238095 0.704761904761905"; depth 105 ; unknown ; N/A GL193143.1 samtools variation 711296 711296 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193143.1 samtools variation 712808 712808 . . . alleles " G A"; frequencies " 0.757575757575758 0.227272727272727"; depth 66 ; unknown ; N/A GL193143.1 samtools variation 712852 712852 . . . alleles " C T"; frequencies " 0.354838709677419 0.645161290322581"; depth 62 ; unknown ; N/A GL193143.1 samtools variation 713190 713190 . . . alleles " T C"; frequencies " 0.358862144420131 0.641137855579869"; depth 457 ; unknown ; N/A GL193143.1 samtools variation 714619 714619 . . . alleles " C T"; frequencies " 0.431418522860492 0.568581477139508"; depth 853 ; unknown ; N/A GL193143.1 samtools variation 719096 719096 . . . alleles " C G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193143.1 samtools variation 720093 720093 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL193143.1 samtools variation 720135 720135 . . . alleles " G T"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; N/A GL193143.1 samtools variation 720488 720488 . . . alleles " T C"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; unknown ; N/A GL193143.1 samtools variation 720766 720766 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 46 ; unknown ; N/A GL193143.1 samtools variation 720785 720785 . . . alleles " C T"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; N/A GL193143.1 samtools variation 723517 723517 . . . alleles " G T"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL193143.1 samtools variation 727033 727033 . . . alleles " T C"; frequencies " 0.328358208955224 0.671641791044776"; depth 67 ; unknown ; N/A GL193143.1 samtools variation 727213 727213 . . . alleles " G A"; frequencies " 0.387323943661972 0.612676056338028"; depth 142 ; unknown ; N/A GL193143.1 samtools variation 727672 727672 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193143.1 samtools variation 728514 728514 . . . alleles " G A"; frequencies " 0.539473684210526 0.460526315789474"; depth 76 ; unknown ; N/A GL193143.1 samtools variation 728828 728828 . . . alleles " G A"; frequencies " 0.767441860465116 0.232558139534884"; depth 86 ; unknown ; N/A GL193143.1 samtools variation 729839 729839 . . . alleles " A G"; frequencies " 0.403508771929825 0.596491228070175"; depth 57 ; unknown ; N/A GL193143.1 samtools variation 730585 730585 . . . alleles " A T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193143.1 samtools variation 732450 732450 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193143.1 samtools variation 733434 733434 . . . alleles " G C"; frequencies " 0.690909090909091 0.309090909090909"; depth 55 ; unknown ; N/A GL193143.1 samtools variation 734731 734731 . . . alleles " T C"; frequencies " 0.214760147601476 0.78450184501845"; depth 1355 ; unknown ; synonymous GL193143.1 samtools variation 734864 734864 . . . alleles " T C"; frequencies " 0.468085106382979 0.531914893617021"; depth 47 ; unknown ; N/A GL193143.1 samtools variation 737039 737039 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 50 ; unknown ; N/A GL193143.1 samtools variation 737229 737229 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 140 ; unknown ; N/A GL193143.1 samtools variation 737875 737875 . . . alleles " T C"; frequencies " 0.394083969465649 0.605916030534351"; depth 1048 ; unknown ; N/A GL193143.1 samtools variation 738772 738772 . . . alleles " T A"; frequencies " 0.365123889668069 0.634876110331931"; depth 2139 ; unknown ; N/A GL193143.1 samtools variation 742740 742740 . . . alleles " C G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193143.1 samtools variation 743155 743155 . . . alleles " G A"; frequencies " 0.731182795698925 0.268817204301075"; depth 93 ; unknown ; N/A GL193143.1 samtools variation 744058 744058 . . . alleles " G C"; frequencies " 0.46875 0.53125"; depth 128 ; unknown ; N/A GL193143.1 samtools variation 744993 744993 . . . alleles " T C"; frequencies " 0.480519480519481 0.519480519480519"; depth 77 ; unknown ; N/A GL193143.1 samtools variation 748358 748358 . . . alleles " C T"; frequencies " 0.580645161290323 0.419354838709677"; depth 62 ; unknown ; N/A GL193143.1 samtools variation 750685 750685 . . . alleles " G A"; frequencies " 0.796875 0.203125"; depth 128 ; unknown ; N/A GL193143.1 samtools variation 756980 756980 . . . alleles " T C"; frequencies " 0.65979381443299 0.34020618556701"; depth 97 ; unknown ; N/A GL193143.1 samtools variation 757548 757548 . . . alleles " G A"; frequencies " 0.616438356164384 0.383561643835616"; depth 146 ; unknown ; N/A GL193143.1 samtools variation 762264 762264 . . . alleles " A C"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; N/A GL193143.1 samtools variation 763631 763631 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 35 ; unknown ; N/A GL193143.1 samtools variation 764100 764100 . . . alleles " A G"; frequencies " 0.616834170854271 0.383165829145729"; depth 796 ; unknown ; synonymous GL193143.1 samtools variation 766108 766108 . . . alleles " G A"; frequencies " 0.619289340101523 0.380710659898477"; depth 985 ; unknown ; synonymous GL193143.1 samtools variation 766990 766990 . . . alleles " A C"; frequencies " 0.394736842105263 0.605263157894737"; depth 38 ; unknown ; N/A GL193143.1 samtools variation 775562 775562 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193143.1 samtools variation 779660 779660 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193143.1 samtools variation 780880 780880 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193143.1 samtools variation 785103 785103 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193143.1 samtools variation 788331 788331 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193143.1 samtools variation 809489 809489 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL193143.1 samtools variation 832144 832144 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193143.1 samtools variation 874644 874644 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; known ; N/A GL193143.1 samtools variation 874878 874878 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 58 ; known ; N/A GL193143.1 samtools variation 875790 875790 . . . alleles " C T"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL193143.1 samtools variation 881370 881370 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193143.1 samtools variation 885660 885660 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193143.1 samtools variation 891072 891072 . . . alleles " T C"; frequencies " 0.204081632653061 0.795918367346939"; depth 147 ; unknown ; N/A GL193143.1 samtools variation 923924 923924 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL193144.1 samtools variation 289633 289633 . . . alleles " A G"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL193144.1 samtools variation 289664 289664 . . . alleles " T C"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL193144.1 samtools variation 290717 290717 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL193144.1 samtools variation 290735 290735 . . . alleles " G T"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL193144.1 samtools variation 293728 293728 . . . alleles " G T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193144.1 samtools variation 346934 346934 . . . alleles " G A"; frequencies " 0.496031746031746 0.503968253968254"; depth 756 ; unknown ; N/A GL193144.1 samtools variation 347428 347428 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193144.1 samtools variation 348150 348150 . . . alleles " G C"; frequencies " 0.512422360248447 0.487577639751553"; depth 322 ; unknown ; N/A GL193144.1 samtools variation 348336 348336 . . . alleles " A G"; frequencies " 0.473076923076923 0.526923076923077"; depth 260 ; unknown ; synonymous GL193144.1 samtools variation 351847 351847 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193144.1 samtools variation 352024 352024 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193144.1 samtools variation 356111 356111 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193144.1 samtools variation 363861 363861 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193144.1 samtools variation 385784 385784 . . . alleles " A C"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; unknown ; N/A GL193144.1 samtools variation 388143 388143 . . . alleles " C T"; frequencies " 0.629310344827586 0.370689655172414"; depth 116 ; unknown ; synonymous GL193144.1 samtools variation 444352 444352 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; synonymous GL193144.1 samtools variation 471356 471356 . . . alleles " C T"; frequencies " 0.547619047619048 0.452380952380952"; depth 42 ; unknown ; synonymous GL193144.1 samtools variation 472586 472586 . . . alleles " C G"; frequencies " 0.774193548387097 0.225806451612903"; depth 62 ; unknown ; N/A GL193144.1 samtools variation 472630 472630 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL193144.1 samtools variation 472711 472711 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL193144.1 samtools variation 472791 472791 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 52 ; unknown ; N/A GL193144.1 samtools variation 472876 472876 . . . alleles " C T"; frequencies " 0.364705882352941 0.635294117647059"; depth 85 ; known ; N/A GL193144.1 samtools variation 472942 472942 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 46 ; known ; N/A GL193144.1 samtools variation 472965 472965 . . . alleles " A C"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; known ; N/A GL193144.1 samtools variation 473628 473628 . . . alleles " T A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; N/A GL193145.1 samtools variation 84542 84542 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193145.1 samtools variation 84983 84983 . . . alleles " T C"; frequencies " 0.513513513513513 0.486486486486487"; depth 37 ; unknown ; N/A GL193145.1 samtools variation 85100 85100 . . . alleles " G A"; frequencies " 0.580645161290323 0.419354838709677"; depth 62 ; unknown ; synonymous GL193145.1 samtools variation 86820 86820 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193145.1 samtools variation 100394 100394 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193145.1 samtools variation 101872 101872 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL193145.1 samtools variation 110220 110220 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL193145.1 samtools variation 111072 111072 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193145.1 samtools variation 121041 121041 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193145.1 samtools variation 143876 143876 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193145.1 samtools variation 144419 144419 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193145.1 samtools variation 146939 146939 . . . alleles " G C"; frequencies " 0.742424242424242 0.257575757575758"; depth 66 ; unknown ; N/A GL193145.1 samtools variation 147027 147027 . . . alleles " C A"; frequencies " 0.685714285714286 0.314285714285714"; depth 70 ; unknown ; N/A GL193145.1 samtools variation 148455 148455 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193145.1 samtools variation 153826 153826 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193145.1 samtools variation 159717 159717 . . . alleles " T A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193145.1 samtools variation 160417 160417 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193145.1 samtools variation 164574 164574 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193145.1 samtools variation 223998 223998 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193145.1 samtools variation 227309 227309 . . . alleles " G A"; frequencies " 0.667953667953668 0.332046332046332"; depth 259 ; unknown ; synonymous GL193145.1 samtools variation 228866 228866 . . . alleles " C T"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL193145.1 samtools variation 229858 229858 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193145.1 samtools variation 229884 229884 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193145.1 samtools variation 233316 233316 . . . alleles " G T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193145.1 samtools variation 234822 234822 . . . alleles " T C"; frequencies " 0.513513513513513 0.486486486486487"; depth 148 ; unknown ; non-synonymous GL193145.1 samtools variation 248994 248994 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193145.1 samtools variation 263057 263057 . . . alleles " A G"; frequencies " 0.602272727272727 0.397727272727273"; depth 264 ; unknown ; synonymous GL193145.1 samtools variation 288546 288546 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193145.1 samtools variation 584337 584337 . . . alleles " C T"; frequencies " 0.702702702702703 0.297297297297297"; depth 111 ; unknown ; synonymous GL193145.1 samtools variation 586634 586634 . . . alleles " T C"; frequencies " 0.203619909502262 0.796380090497738"; depth 221 ; unknown ; synonymous GL193145.1 samtools variation 590758 590758 . . . alleles " A G"; frequencies " 0.303030303030303 0.696969696969697"; depth 33 ; unknown ; N/A GL193145.1 samtools variation 590982 590982 . . . alleles " G A"; frequencies " 0.573529411764706 0.426470588235294"; depth 68 ; unknown ; N/A GL193145.1 samtools variation 592420 592420 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193145.1 samtools variation 593114 593114 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL193145.1 samtools variation 596856 596856 . . . alleles " T A"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193145.1 samtools variation 599208 599208 . . . alleles " T C"; frequencies " 0.612371134020619 0.387628865979381"; depth 485 ; unknown ; N/A GL193145.1 samtools variation 635380 635380 . . . alleles " T C"; frequencies " 0.635714285714286 0.364285714285714"; depth 140 ; unknown ; N/A GL193145.1 samtools variation 891254 891254 . . . alleles " C A"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; unknown ; N/A GL193145.1 samtools variation 891292 891292 . . . alleles " T A"; frequencies " 0.414285714285714 0.585714285714286"; depth 70 ; unknown ; N/A GL193145.1 samtools variation 891361 891361 . . . alleles " C T"; frequencies " 0.798816568047337 0.201183431952663"; depth 169 ; unknown ; N/A GL193145.1 samtools variation 895878 895878 . . . alleles " A C"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; unknown ; N/A GL193145.1 samtools variation 899853 899853 . . . alleles " C T"; frequencies " 0.658536585365854 0.341463414634146"; depth 287 ; unknown ; non-synonymous GL193145.1 samtools variation 901518 901518 . . . alleles " G A"; frequencies " 0.741666666666667 0.258333333333333"; depth 120 ; unknown ; non-synonymous GL193145.1 samtools variation 905850 905850 . . . alleles " C G"; frequencies " 0.232558139534884 0.767441860465116"; depth 43 ; unknown ; N/A GL193145.1 samtools variation 906251 906251 . . . alleles " T G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL193146.1 samtools variation 4063 4063 . . . alleles " G A"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL193146.1 samtools variation 4112 4112 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; N/A GL193146.1 samtools variation 4123 4123 . . . alleles " A C"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL193146.1 samtools variation 7491 7491 . . . alleles " G A"; frequencies " 0.425287356321839 0.574712643678161"; depth 87 ; unknown ; synonymous GL193146.1 samtools variation 22626 22626 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193146.1 samtools variation 58696 58696 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; synonymous GL193146.1 samtools variation 77207 77207 . . . alleles " G C"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL193146.1 samtools variation 78901 78901 . . . alleles " G A"; frequencies " 0.372093023255814 0.627906976744186"; depth 43 ; unknown ; synonymous GL193146.1 samtools variation 81903 81903 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193146.1 samtools variation 109892 109892 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL193146.1 samtools variation 110352 110352 . . . alleles " C T"; frequencies " 0.788888888888889 0.211111111111111"; depth 90 ; unknown ; synonymous GL193146.1 samtools variation 110389 110389 . . . alleles " C T"; frequencies " 0.529100529100529 0.470899470899471"; depth 189 ; unknown ; non-synonymous GL193146.1 samtools variation 111119 111119 . . . alleles " G C"; frequencies " 0.469387755102041 0.530612244897959"; depth 49 ; unknown ; N/A GL193146.1 samtools variation 111179 111179 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 60 ; unknown ; N/A GL193146.1 samtools variation 111479 111479 . . . alleles " T G"; frequencies " 0.625 0.375"; depth 40 ; unknown ; N/A GL193146.1 samtools variation 113309 113309 . . . alleles " G C"; frequencies " 0.26775956284153 0.73224043715847"; depth 183 ; unknown ; non-synonymous GL193146.1 samtools variation 120460 120460 . . . alleles " C G"; frequencies " 0.215116279069767 0.784883720930233"; depth 172 ; unknown ; N/A GL193146.1 samtools variation 121058 121058 . . . alleles " G C"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL193146.1 samtools variation 121130 121130 . . . alleles " G A"; frequencies " 0.241935483870968 0.758064516129032"; depth 62 ; unknown ; N/A GL193146.1 samtools variation 121913 121913 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 108 ; unknown ; N/A GL193146.1 samtools variation 121926 121926 . . . alleles " C T"; frequencies " 0.734042553191489 0.265957446808511"; depth 94 ; unknown ; N/A GL193146.1 samtools variation 123583 123583 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL193146.1 samtools variation 125024 125024 . . . alleles " C T"; frequencies " 0.540540540540541 0.459459459459459"; depth 37 ; unknown ; N/A GL193146.1 samtools variation 126953 126953 . . . alleles " G C"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL193146.1 samtools variation 150276 150276 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; synonymous GL193146.1 samtools variation 150503 150503 . . . alleles " T C"; frequencies " 0.44 0.56"; depth 25 ; unknown ; synonymous GL193146.1 samtools variation 152230 152230 . . . alleles " G A"; frequencies " 0.691358024691358 0.308641975308642"; depth 81 ; unknown ; synonymous GL193146.1 samtools variation 152709 152709 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; synonymous GL193146.1 samtools variation 273888 273888 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL193146.1 samtools variation 275052 275052 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193146.1 samtools variation 275213 275213 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193146.1 samtools variation 276914 276914 . . . alleles " G A"; frequencies " 0.442622950819672 0.557377049180328"; depth 61 ; known ; N/A GL193146.1 samtools variation 280281 280281 . . . alleles " T C"; frequencies " 0.641592920353982 0.358407079646018"; depth 226 ; unknown ; synonymous GL193146.1 samtools variation 296113 296113 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 46 ; known ; non-synonymous GL193146.1 samtools variation 297718 297718 . . . alleles " A C"; frequencies " 0.322147651006711 0.677852348993289"; depth 149 ; unknown ; N/A GL193146.1 samtools variation 393422 393422 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; synonymous GL193146.1 samtools variation 398277 398277 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; synonymous GL193146.1 samtools variation 415256 415256 . . . alleles " G A"; frequencies " 0.626702997275204 0.373297002724796"; depth 367 ; known ; non-synonymous GL193146.1 samtools variation 416295 416295 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193146.1 samtools variation 418660 418660 . . . alleles " G A"; frequencies " 0.208333333333333 0.791666666666667"; depth 48 ; known ; N/A GL193146.1 samtools variation 425872 425872 . . . alleles " T C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193146.1 samtools variation 425926 425926 . . . alleles " C T"; frequencies " 0.301369863013699 0.698630136986301"; depth 73 ; unknown ; N/A GL193146.1 samtools variation 426334 426334 . . . alleles " T G"; frequencies " 0.2 0.8"; depth 80 ; known ; N/A GL193146.1 samtools variation 431266 431266 . . . alleles " A G"; frequencies " 0.560769591740967 0.437822618488972"; depth 2131 ; known ; synonymous GL193146.1 samtools variation 432478 432478 . . . alleles " T A"; frequencies " 0.703703703703704 0.222222222222222"; depth 27 ; known ; N/A GL193146.1 samtools variation 433091 433091 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193146.1 samtools variation 433784 433784 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; known ; N/A GL193146.1 samtools variation 434009 434009 . . . alleles " G A"; frequencies " 0.616236162361624 0.383763837638376"; depth 271 ; known ; N/A GL193146.1 samtools variation 434016 434016 . . . alleles " G A"; frequencies " 0.625874125874126 0.374125874125874"; depth 286 ; known ; N/A GL193146.1 samtools variation 434328 434328 . . . alleles " C A"; frequencies " 0.686708860759494 0.313291139240506"; depth 632 ; unknown ; N/A GL193146.1 samtools variation 435211 435211 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193146.1 samtools variation 435669 435669 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193146.1 samtools variation 436914 436914 . . . alleles " G A"; frequencies " 0.756756756756757 0.243243243243243"; depth 74 ; unknown ; N/A GL193146.1 samtools variation 437117 437117 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 60 ; unknown ; N/A GL193146.1 samtools variation 437186 437186 . . . alleles " T C"; frequencies " 0.576923076923077 0.423076923076923"; depth 78 ; unknown ; N/A GL193146.1 samtools variation 440616 440616 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 40 ; known ; N/A GL193146.1 samtools variation 440656 440656 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; known ; N/A GL193146.1 samtools variation 440723 440723 . . . alleles " G A"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL193146.1 samtools variation 444124 444124 . . . alleles " A G"; frequencies " 0.364963503649635 0.635036496350365"; depth 137 ; known ; synonymous GL193146.1 samtools variation 490304 490304 . . . alleles " G T"; frequencies " 0.26984126984127 0.73015873015873"; depth 441 ; known ; N/A GL193146.1 samtools variation 490996 490996 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193146.1 samtools variation 517271 517271 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193146.1 samtools variation 519243 519243 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; non-synonymous GL193146.1 samtools variation 522545 522545 . . . alleles " C A"; frequencies " 0.556818181818182 0.443181818181818"; depth 88 ; known ; N/A GL193146.1 samtools variation 523846 523846 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 32 ; known ; N/A GL193146.1 samtools variation 523999 523999 . . . alleles " C T"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; known ; N/A GL193146.1 samtools variation 524098 524098 . . . alleles " A G"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; known ; N/A GL193146.1 samtools variation 542342 542342 . . . alleles " T C"; frequencies " 0.788732394366197 0.211267605633803"; depth 71 ; unknown ; N/A GL193146.1 samtools variation 542714 542714 . . . alleles " C A"; frequencies " 0.330543933054393 0.669456066945607"; depth 239 ; known ; N/A GL193146.1 samtools variation 544126 544126 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193146.1 samtools variation 545667 545667 . . . alleles " C G"; frequencies " 0.625 0.375"; depth 40 ; unknown ; synonymous GL193146.1 samtools variation 555512 555512 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL193146.1 samtools variation 555558 555558 . . . alleles " A T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193146.1 samtools variation 567825 567825 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 28 ; unknown ; synonymous GL193146.1 samtools variation 571895 571895 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL193146.1 samtools variation 603938 603938 . . . alleles " T G"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL193146.1 samtools variation 604165 604165 . . . alleles " G A"; frequencies " 0.305882352941176 0.694117647058824"; depth 170 ; known ; N/A GL193146.1 samtools variation 631872 631872 . . . alleles " G A"; frequencies " 0.464285714285714 0.535714285714286"; depth 112 ; unknown ; synonymous GL193146.1 samtools variation 634215 634215 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; N/A GL193146.1 samtools variation 636719 636719 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL193146.1 samtools variation 643863 643863 . . . alleles " C T"; frequencies " 0.532520325203252 0.467479674796748"; depth 984 ; unknown ; synonymous GL193146.1 samtools variation 692065 692065 . . . alleles " G T"; frequencies " 0.728862973760933 0.271137026239067"; depth 343 ; unknown ; N/A GL193146.1 samtools variation 694021 694021 . . . alleles " A G"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL193146.1 samtools variation 694625 694625 . . . alleles " G A"; frequencies " 0.754716981132076 0.245283018867925"; depth 53 ; unknown ; synonymous GL193146.1 samtools variation 695466 695466 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL193146.1 samtools variation 695497 695497 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193146.1 samtools variation 696629 696629 . . . alleles " G T"; frequencies " 0.455696202531646 0.544303797468354"; depth 79 ; unknown ; synonymous GL193146.1 samtools variation 696960 696960 . . . alleles " G C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193146.1 samtools variation 704221 704221 . . . alleles " G C"; frequencies " 0.229166666666667 0.770833333333333"; depth 48 ; known ; N/A GL193146.1 samtools variation 704525 704525 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL193146.1 samtools variation 704618 704618 . . . alleles " G C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL193146.1 samtools variation 704704 704704 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; known ; N/A GL193146.1 samtools variation 705932 705932 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193146.1 samtools variation 706243 706243 . . . alleles " T C"; frequencies " 0.758064516129032 0.241935483870968"; depth 62 ; known ; N/A GL193146.1 samtools variation 706454 706454 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193146.1 samtools variation 709551 709551 . . . alleles " A G"; frequencies " 0.53125 0.46875"; depth 32 ; known ; N/A GL193146.1 samtools variation 711329 711329 . . . alleles " G A"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; N/A GL193146.1 samtools variation 712145 712145 . . . alleles " A G"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; unknown ; N/A GL193146.1 samtools variation 712186 712186 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193146.1 samtools variation 713458 713458 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193146.1 samtools variation 714203 714203 . . . alleles " A G"; frequencies " 0.469879518072289 0.530120481927711"; depth 83 ; unknown ; non-synonymous GL193146.1 samtools variation 729146 729146 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193146.1 samtools variation 778725 778725 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193146.1 samtools variation 788019 788019 . . . alleles " C T"; frequencies " 0.32 0.68"; depth 25 ; known ; synonymous GL193146.1 samtools variation 788344 788344 . . . alleles " T G"; frequencies " 0.433962264150943 0.566037735849057"; depth 53 ; known ; synonymous GL193146.1 samtools variation 881419 881419 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193146.1 samtools variation 889279 889279 . . . alleles " C G"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; known ; N/A GL193146.1 samtools variation 900534 900534 . . . alleles " G A"; frequencies " 0.696737044145873 0.303262955854127"; depth 521 ; unknown ; synonymous GL193146.1 samtools variation 905080 905080 . . . alleles " C A"; frequencies " 0.742236024844721 0.257763975155279"; depth 322 ; unknown ; N/A GL193146.1 samtools variation 910245 910245 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL193146.1 samtools variation 910783 910783 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193146.1 samtools variation 910831 910831 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193146.1 samtools variation 911185 911185 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193146.1 samtools variation 911244 911244 . . . alleles " T C"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; N/A GL193146.1 samtools variation 911695 911695 . . . alleles " C G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193146.1 samtools variation 912805 912805 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193146.1 samtools variation 914253 914253 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL193146.1 samtools variation 914291 914291 . . . alleles " A G"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL193146.1 samtools variation 915815 915815 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193146.1 samtools variation 916540 916540 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193146.1 samtools variation 916553 916553 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193146.1 samtools variation 916947 916947 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL193146.1 samtools variation 916948 916948 . . . alleles " G C"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL193146.1 samtools variation 917280 917280 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193146.1 samtools variation 925650 925650 . . . alleles " C A"; frequencies " 0.58695652173913 0.41304347826087"; depth 46 ; known ; N/A GL193146.1 samtools variation 925897 925897 . . . alleles " G C"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; known ; N/A GL193146.1 samtools variation 927059 927059 . . . alleles " C A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193146.1 samtools variation 927220 927220 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193146.1 samtools variation 927262 927262 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193146.1 samtools variation 928675 928675 . . . alleles " C T"; frequencies " 0.5 0.444444444444444"; depth 18 ; known ; N/A GL193146.1 samtools variation 939112 939112 . . . alleles " G T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193147.1 samtools variation 488661 488661 . . . alleles " C T"; frequencies " 0.766129032258065 0.233870967741935"; depth 124 ; unknown ; N/A GL193147.1 samtools variation 489488 489488 . . . alleles " T C"; frequencies " 0.52 0.48"; depth 50 ; unknown ; N/A GL193147.1 samtools variation 540706 540706 . . . alleles " C G"; frequencies " 0.476190476190476 0.476190476190476"; depth 42 ; unknown ; N/A GL193147.1 samtools variation 562542 562542 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; known ; N/A GL193147.1 samtools variation 564174 564174 . . . alleles " G A"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; known ; N/A GL193147.1 samtools variation 564196 564196 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; known ; N/A GL193147.1 samtools variation 564400 564400 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 54 ; known ; synonymous GL193147.1 samtools variation 564613 564613 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; known ; synonymous GL193147.1 samtools variation 565568 565568 . . . alleles " A G"; frequencies " 0.326086956521739 0.673913043478261"; depth 46 ; known ; N/A GL193147.1 samtools variation 565684 565684 . . . alleles " G C"; frequencies " 0.391304347826087 0.608695652173913"; depth 46 ; known ; N/A GL193150.1 samtools variation 282563 282563 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193150.1 samtools variation 373444 373444 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 45 ; known ; N/A GL193150.1 samtools variation 386434 386434 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 35 ; unknown ; N/A GL193150.1 samtools variation 390453 390453 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 35 ; unknown ; N/A GL193150.1 samtools variation 394041 394041 . . . alleles " C G"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL193150.1 samtools variation 397729 397729 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; known ; N/A GL193150.1 samtools variation 405264 405264 . . . alleles " A G"; frequencies " 0.514851485148515 0.485148514851485"; depth 202 ; unknown ; N/A GL193150.1 samtools variation 414762 414762 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193154.1 samtools variation 147612 147612 . . . alleles " G A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; synonymous GL193154.1 samtools variation 306933 306933 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; synonymous GL193154.1 samtools variation 520196 520196 . . . alleles " A T"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL193154.1 samtools variation 525569 525569 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; synonymous GL193154.1 samtools variation 525596 525596 . . . alleles " G A"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL193154.1 samtools variation 525707 525707 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; non-synonymous GL193154.1 samtools variation 525932 525932 . . . alleles " G A"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; non-synonymous GL193154.1 samtools variation 527422 527422 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193154.1 samtools variation 527558 527558 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; unknown ; N/A GL193154.1 samtools variation 529476 529476 . . . alleles " T G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL193154.1 samtools variation 530026 530026 . . . alleles " G A"; frequencies " 0.40625 0.59375"; depth 32 ; unknown ; N/A GL193154.1 samtools variation 538171 538171 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; N/A GL193154.1 samtools variation 557597 557597 . . . alleles " G C"; frequencies " 0.377551020408163 0.622448979591837"; depth 98 ; unknown ; non-synonymous GL193154.1 samtools variation 702115 702115 . . . alleles " C T"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL193154.1 samtools variation 702135 702135 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 35 ; known ; N/A GL193155.1 samtools variation 154411 154411 . . . alleles " T A"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL193155.1 samtools variation 156761 156761 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193155.1 samtools variation 156789 156789 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193155.1 samtools variation 156963 156963 . . . alleles " T C"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL193155.1 samtools variation 198549 198549 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193155.1 samtools variation 207466 207466 . . . alleles " A C"; frequencies " 0.578820375335121 0.420107238605898"; depth 3730 ; known ; synonymous GL193155.1 samtools variation 209376 209376 . . . alleles " A G"; frequencies " 0.730263157894737 0.269736842105263"; depth 152 ; known ; N/A GL193155.1 samtools variation 210038 210038 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193155.1 samtools variation 210146 210146 . . . alleles " C G"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; known ; N/A GL193155.1 samtools variation 210161 210161 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL193155.1 samtools variation 210172 210172 . . . alleles " T C"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; known ; N/A GL193155.1 samtools variation 210743 210743 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193155.1 samtools variation 210777 210777 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193155.1 samtools variation 210833 210833 . . . alleles " T C"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; known ; N/A GL193155.1 samtools variation 210871 210871 . . . alleles " A G"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; known ; N/A GL193155.1 samtools variation 211319 211319 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; synonymous GL193155.1 samtools variation 211323 211323 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; non-synonymous GL193155.1 samtools variation 212210 212210 . . . alleles " A T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL193155.1 samtools variation 213744 213744 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193155.1 samtools variation 216684 216684 . . . alleles " T C"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; known ; N/A GL193155.1 samtools variation 233882 233882 . . . alleles " G A"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL193155.1 samtools variation 242808 242808 . . . alleles " C T"; frequencies " 0.517857142857143 0.482142857142857"; depth 56 ; unknown ; N/A GL193155.1 samtools variation 250541 250541 . . . alleles " C A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193155.1 samtools variation 250555 250555 . . . alleles " T G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193155.1 samtools variation 251196 251196 . . . alleles " G C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193155.1 samtools variation 294978 294978 . . . alleles " G A"; frequencies " 0.214814814814815 0.785185185185185"; depth 135 ; unknown ; synonymous GL193155.1 samtools variation 318954 318954 . . . alleles " G A"; frequencies " 0.745762711864407 0.254237288135593"; depth 59 ; unknown ; N/A GL193155.1 samtools variation 335412 335412 . . . alleles " T A"; frequencies " 0.69811320754717 0.30188679245283"; depth 159 ; unknown ; N/A GL193155.1 samtools variation 335817 335817 . . . alleles " G A"; frequencies " 0.608695652173913 0.391304347826087"; depth 46 ; unknown ; N/A GL193155.1 samtools variation 388037 388037 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL193155.1 samtools variation 390757 390757 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193155.1 samtools variation 392829 392829 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193155.1 samtools variation 412399 412399 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL193155.1 samtools variation 437135 437135 . . . alleles " A G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL193155.1 samtools variation 456382 456382 . . . alleles " C G"; frequencies " 0.679245283018868 0.320754716981132"; depth 53 ; unknown ; N/A GL193155.1 samtools variation 456432 456432 . . . alleles " A C"; frequencies " 0.615384615384615 0.384615384615385"; depth 39 ; known ; N/A GL193155.1 samtools variation 461145 461145 . . . alleles " G A"; frequencies " 0.664179104477612 0.335820895522388"; depth 134 ; unknown ; synonymous GL193155.1 samtools variation 474237 474237 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193155.1 samtools variation 477950 477950 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193155.1 samtools variation 482490 482490 . . . alleles " T C"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL193155.1 samtools variation 482586 482586 . . . alleles " T A"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; unknown ; N/A GL193155.1 samtools variation 483166 483166 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193155.1 samtools variation 483551 483551 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193155.1 samtools variation 484550 484550 . . . alleles " A G"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL193155.1 samtools variation 485890 485890 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL193155.1 samtools variation 486059 486059 . . . alleles " A G"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL193155.1 samtools variation 486222 486222 . . . alleles " T C"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL193155.1 samtools variation 486247 486247 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL193155.1 samtools variation 486429 486429 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193155.1 samtools variation 490160 490160 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193155.1 samtools variation 492126 492126 . . . alleles " A G"; frequencies " 0.644628099173554 0.355371900826446"; depth 121 ; unknown ; synonymous GL193155.1 samtools variation 494091 494091 . . . alleles " C G"; frequencies " 0.590277777777778 0.409722222222222"; depth 144 ; unknown ; N/A GL193155.1 samtools variation 494205 494205 . . . alleles " C T"; frequencies " 0.699300699300699 0.300699300699301"; depth 143 ; unknown ; N/A GL193155.1 samtools variation 494675 494675 . . . alleles " C G"; frequencies " 0.721518987341772 0.278481012658228"; depth 158 ; known ; N/A GL193155.1 samtools variation 494778 494778 . . . alleles " A G"; frequencies " 0.778481012658228 0.221518987341772"; depth 158 ; unknown ; N/A GL193155.1 samtools variation 576681 576681 . . . alleles " T C"; frequencies " 0.262295081967213 0.737704918032787"; depth 61 ; unknown ; synonymous GL193155.1 samtools variation 586124 586124 . . . alleles " C T"; frequencies " 0.701612903225806 0.298387096774194"; depth 124 ; unknown ; N/A GL193155.1 samtools variation 601405 601405 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; unknown ; N/A GL193155.1 samtools variation 602405 602405 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193155.1 samtools variation 603752 603752 . . . alleles " C T"; frequencies " 0.677966101694915 0.322033898305085"; depth 59 ; unknown ; N/A GL193155.1 samtools variation 604188 604188 . . . alleles " A G"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; known ; N/A GL193155.1 samtools variation 604783 604783 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 77 ; unknown ; N/A GL193155.1 samtools variation 605019 605019 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193155.1 samtools variation 607134 607134 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193155.1 samtools variation 608062 608062 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193155.1 samtools variation 608246 608246 . . . alleles " T C"; frequencies " 0.640378548895899 0.359621451104101"; depth 317 ; unknown ; synonymous GL193155.1 samtools variation 608638 608638 . . . alleles " C G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193155.1 samtools variation 609438 609438 . . . alleles " C T"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL193155.1 samtools variation 609439 609439 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL193155.1 samtools variation 609927 609927 . . . alleles " C T"; frequencies " 0.667605633802817 0.332394366197183"; depth 355 ; unknown ; synonymous GL193155.1 samtools variation 617221 617221 . . . alleles " C A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193155.1 samtools variation 661417 661417 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 24 ; unknown ; synonymous GL193155.1 samtools variation 664033 664033 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL193155.1 samtools variation 673751 673751 . . . alleles " A C"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193155.1 samtools variation 732962 732962 . . . alleles " C T"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL193155.1 samtools variation 737722 737722 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193155.1 samtools variation 793653 793653 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193155.1 samtools variation 820332 820332 . . . alleles " C T"; frequencies " 0.655172413793103 0.344827586206897"; depth 116 ; unknown ; N/A GL193155.1 samtools variation 820742 820742 . . . alleles " G A"; frequencies " 0.534246575342466 0.465753424657534"; depth 73 ; unknown ; N/A GL193155.1 samtools variation 821655 821655 . . . alleles " G A"; frequencies " 0.723076923076923 0.276923076923077"; depth 65 ; unknown ; N/A GL193155.1 samtools variation 824083 824083 . . . alleles " A G"; frequencies " 0.334524660471766 0.664760543245175"; depth 1399 ; known ; N/A GL193155.1 samtools variation 831273 831273 . . . alleles " C A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193155.1 samtools variation 833760 833760 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL193155.1 samtools variation 839450 839450 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; N/A GL193155.1 samtools variation 872988 872988 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193155.1 samtools variation 890087 890087 . . . alleles " C T"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; known ; N/A GL193156.1 samtools variation 22869 22869 . . . alleles " T C"; frequencies " 0.795918367346939 0.204081632653061"; depth 49 ; unknown ; synonymous GL193156.1 samtools variation 31305 31305 . . . alleles " C G"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; unknown ; N/A GL193156.1 samtools variation 32448 32448 . . . alleles " G C"; frequencies " 0.548780487804878 0.451219512195122"; depth 82 ; unknown ; non-synonymous GL193156.1 samtools variation 32474 32474 . . . alleles " A G"; frequencies " 0.366197183098592 0.633802816901408"; depth 71 ; known ; non-synonymous GL193156.1 samtools variation 32491 32491 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 81 ; known ; non-synonymous GL193156.1 samtools variation 32585 32585 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; non-synonymous GL193156.1 samtools variation 70502 70502 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193156.1 samtools variation 70531 70531 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193156.1 samtools variation 71378 71378 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193156.1 samtools variation 76785 76785 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193156.1 samtools variation 111950 111950 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193156.1 samtools variation 179788 179788 . . . alleles " C T"; frequencies " 0.74 0.26"; depth 50 ; unknown ; N/A GL193156.1 samtools variation 180829 180829 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193156.1 samtools variation 181555 181555 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193156.1 samtools variation 183365 183365 . . . alleles " G A"; frequencies " 0.327868852459016 0.672131147540984"; depth 61 ; unknown ; N/A GL193156.1 samtools variation 183587 183587 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 55 ; known ; N/A GL193156.1 samtools variation 183782 183782 . . . alleles " G A"; frequencies " 0.406015037593985 0.593984962406015"; depth 133 ; known ; N/A GL193156.1 samtools variation 184789 184789 . . . alleles " G A"; frequencies " 0.711864406779661 0.288135593220339"; depth 59 ; known ; N/A GL193156.1 samtools variation 185122 185122 . . . alleles " A G"; frequencies " 0.763440860215054 0.236559139784946"; depth 93 ; known ; N/A GL193156.1 samtools variation 189027 189027 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; synonymous GL193156.1 samtools variation 607275 607275 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193156.1 samtools variation 609260 609260 . . . alleles " T G"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL193156.1 samtools variation 612237 612237 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193156.1 samtools variation 613714 613714 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193156.1 samtools variation 628300 628300 . . . alleles " A T"; frequencies " 0.242857142857143 0.757142857142857"; depth 70 ; known ; N/A GL193156.1 samtools variation 634693 634693 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193156.1 samtools variation 635531 635531 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193156.1 samtools variation 635536 635536 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 24 ; known ; N/A GL193156.1 samtools variation 637063 637063 . . . alleles " G A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193156.1 samtools variation 739448 739448 . . . alleles " C A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193156.1 samtools variation 743563 743563 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193156.1 samtools variation 762104 762104 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193156.1 samtools variation 762120 762120 . . . alleles " T A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193156.1 samtools variation 763170 763170 . . . alleles " G T"; frequencies " 0.230769230769231 0.769230769230769"; depth 39 ; known ; N/A GL193156.1 samtools variation 763694 763694 . . . alleles " A T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193156.1 samtools variation 766751 766751 . . . alleles " A C"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; known ; N/A GL193156.1 samtools variation 770245 770245 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL193156.1 samtools variation 770254 770254 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL193156.1 samtools variation 770376 770376 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; N/A GL193156.1 samtools variation 771460 771460 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; known ; N/A GL193156.1 samtools variation 773841 773841 . . . alleles " C T"; frequencies " 0.716417910447761 0.283582089552239"; depth 67 ; unknown ; N/A GL193156.1 samtools variation 774164 774164 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL193156.1 samtools variation 774681 774681 . . . alleles " A G"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL193156.1 samtools variation 776989 776989 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193156.1 samtools variation 778423 778423 . . . alleles " C G"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; unknown ; N/A GL193156.1 samtools variation 778902 778902 . . . alleles " A C"; frequencies " 0.71875 0.28125"; depth 160 ; unknown ; N/A GL193156.1 samtools variation 779090 779090 . . . alleles " C T"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL193156.1 samtools variation 779507 779507 . . . alleles " C G"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; known ; N/A GL193156.1 samtools variation 780614 780614 . . . alleles " A C"; frequencies " 0.618556701030928 0.381443298969072"; depth 97 ; known ; N/A GL193156.1 samtools variation 781074 781074 . . . alleles " C A"; frequencies " 0.747967479674797 0.252032520325203"; depth 123 ; known ; N/A GL193156.1 samtools variation 781114 781114 . . . alleles " T C"; frequencies " 0.314814814814815 0.685185185185185"; depth 108 ; known ; N/A GL193156.1 samtools variation 795374 795374 . . . alleles " C T"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL193157.1 samtools variation 1763 1763 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL193157.1 samtools variation 2128 2128 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193157.1 samtools variation 3173 3173 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193157.1 samtools variation 50615 50615 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL193157.1 samtools variation 82077 82077 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193157.1 samtools variation 82488 82488 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; non-synonymous GL193157.1 samtools variation 83180 83180 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; synonymous GL193157.1 samtools variation 83336 83336 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; known ; non-synonymous GL193157.1 samtools variation 83879 83879 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; synonymous GL193158.1 samtools variation 222516 222516 . . . alleles " G C"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193158.1 samtools variation 226152 226152 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL193158.1 samtools variation 251489 251489 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; known ; non-synonymous GL193158.1 samtools variation 260121 260121 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; synonymous GL193158.1 samtools variation 283879 283879 . . . alleles " T C"; frequencies " 0.475609756097561 0.524390243902439"; depth 82 ; known ; synonymous GL193158.1 samtools variation 284383 284383 . . . alleles " T C"; frequencies " 0.640350877192982 0.359649122807018"; depth 114 ; known ; synonymous GL193158.1 samtools variation 285989 285989 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193158.1 samtools variation 286013 286013 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193158.1 samtools variation 286058 286058 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193158.1 samtools variation 286076 286076 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL193158.1 samtools variation 286469 286469 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193158.1 samtools variation 289817 289817 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193158.1 samtools variation 326219 326219 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193158.1 samtools variation 326632 326632 . . . alleles " G A"; frequencies " 0.316666666666667 0.683333333333333"; depth 60 ; known ; N/A GL193158.1 samtools variation 327633 327633 . . . alleles " T A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193158.1 samtools variation 340286 340286 . . . alleles " G A"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; known ; N/A GL193158.1 samtools variation 342863 342863 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193158.1 samtools variation 343137 343137 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL193158.1 samtools variation 343144 343144 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL193158.1 samtools variation 343194 343194 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL193158.1 samtools variation 513779 513779 . . . alleles " T C"; frequencies " 0.622641509433962 0.377358490566038"; depth 53 ; unknown ; N/A GL193158.1 samtools variation 547074 547074 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193158.1 samtools variation 547312 547312 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193159.1 samtools variation 28755 28755 . . . alleles " A G"; frequencies " 0.371428571428571 0.628571428571429"; depth 35 ; known ; N/A GL193159.1 samtools variation 31241 31241 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193159.1 samtools variation 41303 41303 . . . alleles " T G"; frequencies " 0.4292343387471 0.566125290023202"; depth 431 ; known ; synonymous GL193159.1 samtools variation 100856 100856 . . . alleles " G T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193159.1 samtools variation 116874 116874 . . . alleles " C T"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; N/A GL193159.1 samtools variation 138540 138540 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193159.1 samtools variation 439785 439785 . . . alleles " A G"; frequencies " 0.465116279069767 0.534883720930233"; depth 43 ; known ; N/A GL193159.1 samtools variation 446646 446646 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193159.1 samtools variation 852256 852256 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL193159.1 samtools variation 854662 854662 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL193159.1 samtools variation 871384 871384 . . . alleles " T G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; synonymous GL193159.1 samtools variation 900915 900915 . . . alleles " T G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; non-synonymous GL193160.1 samtools variation 205101 205101 . . . alleles " G A"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; known ; non-synonymous GL193160.1 samtools variation 208741 208741 . . . alleles " A G"; frequencies " 0.582089552238806 0.417910447761194"; depth 67 ; known ; non-synonymous GL193160.1 samtools variation 211492 211492 . . . alleles " C T"; frequencies " 0.546875 0.453125"; depth 64 ; known ; non-synonymous GL193160.1 samtools variation 217625 217625 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL193160.1 samtools variation 222992 222992 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL193160.1 samtools variation 235813 235813 . . . alleles " A T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL193160.1 samtools variation 236454 236454 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193160.1 samtools variation 237721 237721 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193160.1 samtools variation 238755 238755 . . . alleles " G A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL193160.1 samtools variation 238852 238852 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL193160.1 samtools variation 239643 239643 . . . alleles " G T"; frequencies " 0.5625 0.3125"; depth 16 ; known ; N/A GL193160.1 samtools variation 246362 246362 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 57 ; known ; N/A GL193160.1 samtools variation 246611 246611 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193160.1 samtools variation 248025 248025 . . . alleles " A C"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; known ; N/A GL193160.1 samtools variation 248324 248324 . . . alleles " G A"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL193160.1 samtools variation 248826 248826 . . . alleles " A G"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; known ; synonymous GL193160.1 samtools variation 248871 248871 . . . alleles " A G"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; known ; synonymous GL193160.1 samtools variation 248937 248937 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL193160.1 samtools variation 249098 249098 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL193160.1 samtools variation 253097 253097 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 30 ; known ; synonymous GL193160.1 samtools variation 261717 261717 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193160.1 samtools variation 467819 467819 . . . alleles " C G"; frequencies " 0.530612244897959 0.469387755102041"; depth 49 ; known ; N/A GL193160.1 samtools variation 523324 523324 . . . alleles " C T"; frequencies " 0.776315789473684 0.223684210526316"; depth 76 ; known ; synonymous GL193160.1 samtools variation 526017 526017 . . . alleles " T C"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193160.1 samtools variation 528621 528621 . . . alleles " G T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193160.1 samtools variation 592736 592736 . . . alleles " G A"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; N/A GL193160.1 samtools variation 593020 593020 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL193160.1 samtools variation 593042 593042 . . . alleles " C A"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL193160.1 samtools variation 595648 595648 . . . alleles " C G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193160.1 samtools variation 599325 599325 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; N/A GL193160.1 samtools variation 600316 600316 . . . alleles " A G"; frequencies " 0.774509803921569 0.225490196078431"; depth 102 ; unknown ; N/A GL193160.1 samtools variation 739437 739437 . . . alleles " T C"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL193160.1 samtools variation 793912 793912 . . . alleles " G A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL193160.1 samtools variation 795294 795294 . . . alleles " A T"; frequencies " 0.597222222222222 0.40162037037037"; depth 864 ; unknown ; N/A GL193160.1 samtools variation 846049 846049 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 35 ; unknown ; N/A GL193162.1 samtools variation 806582 806582 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193162.1 samtools variation 806807 806807 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193162.1 samtools variation 815332 815332 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193162.1 samtools variation 815363 815363 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193163.1 samtools variation 214011 214011 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; non-synonymous GL193163.1 samtools variation 276411 276411 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 135 ; unknown ; N/A GL193163.1 samtools variation 276425 276425 . . . alleles " G C"; frequencies " 0.433070866141732 0.566929133858268"; depth 127 ; unknown ; N/A GL193163.1 samtools variation 277232 277232 . . . alleles " T G"; frequencies " 0.407407407407407 0.592592592592593"; depth 54 ; unknown ; N/A GL193163.1 samtools variation 278142 278142 . . . alleles " T C"; frequencies " 0.326530612244898 0.673469387755102"; depth 49 ; unknown ; N/A GL193163.1 samtools variation 278211 278211 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 49 ; unknown ; N/A GL193163.1 samtools variation 278364 278364 . . . alleles " G A"; frequencies " 0.516129032258065 0.483870967741935"; depth 62 ; unknown ; N/A GL193163.1 samtools variation 278561 278561 . . . alleles " G A"; frequencies " 0.49438202247191 0.50561797752809"; depth 89 ; unknown ; N/A GL193163.1 samtools variation 279142 279142 . . . alleles " T C"; frequencies " 0.324324324324324 0.675675675675676"; depth 37 ; unknown ; N/A GL193163.1 samtools variation 366026 366026 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193163.1 samtools variation 367475 367475 . . . alleles " T A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193163.1 samtools variation 371502 371502 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; non-synonymous GL193163.1 samtools variation 374625 374625 . . . alleles " C T"; frequencies " 0.627604166666667 0.372395833333333"; depth 384 ; unknown ; N/A GL193163.1 samtools variation 440836 440836 . . . alleles " G A"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193163.1 samtools variation 449041 449041 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193163.1 samtools variation 450597 450597 . . . alleles " C T"; frequencies " 0.324324324324324 0.675675675675676"; depth 74 ; unknown ; N/A GL193163.1 samtools variation 489632 489632 . . . alleles " A T"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; N/A GL193163.1 samtools variation 527089 527089 . . . alleles " T C"; frequencies " 0.234375 0.765625"; depth 64 ; known ; N/A GL193163.1 samtools variation 527657 527657 . . . alleles " C G"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; unknown ; N/A GL193163.1 samtools variation 536362 536362 . . . alleles " C T"; frequencies " 0.716216216216216 0.283783783783784"; depth 74 ; unknown ; N/A GL193163.1 samtools variation 536874 536874 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193163.1 samtools variation 543034 543034 . . . alleles " C T"; frequencies " 0.481481481481481 0.518518518518518"; depth 54 ; unknown ; N/A GL193163.1 samtools variation 606219 606219 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 68 ; unknown ; N/A GL193163.1 samtools variation 606287 606287 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL193163.1 samtools variation 683002 683002 . . . alleles " C T"; frequencies " 0.777142857142857 0.222857142857143"; depth 175 ; unknown ; N/A GL193163.1 samtools variation 723082 723082 . . . alleles " C T"; frequencies " 0.55076495132128 0.44923504867872"; depth 1438 ; unknown ; synonymous GL193163.1 samtools variation 725007 725007 . . . alleles " G A"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL193163.1 samtools variation 731544 731544 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL193163.1 samtools variation 792931 792931 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL193163.1 samtools variation 795026 795026 . . . alleles " A T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL193163.1 samtools variation 814902 814902 . . . alleles " T A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193163.1 samtools variation 826310 826310 . . . alleles " A G"; frequencies " 0.685534591194969 0.314465408805031"; depth 159 ; unknown ; N/A GL193164.1 samtools variation 317181 317181 . . . alleles " T C"; frequencies " 0.316666666666667 0.683333333333333"; depth 60 ; known ; N/A GL193164.1 samtools variation 317986 317986 . . . alleles " T C"; frequencies " 0.703703703703704 0.296296296296296"; depth 54 ; known ; synonymous GL193164.1 samtools variation 318959 318959 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193164.1 samtools variation 363780 363780 . . . alleles " C G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL193164.1 samtools variation 363810 363810 . . . alleles " A C"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL193164.1 samtools variation 366144 366144 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL193164.1 samtools variation 380026 380026 . . . alleles " G A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193164.1 samtools variation 381366 381366 . . . alleles " G A"; frequencies " 0.46875 0.53125"; depth 32 ; known ; N/A GL193164.1 samtools variation 381781 381781 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; known ; N/A GL193164.1 samtools variation 382342 382342 . . . alleles " A C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL193164.1 samtools variation 385394 385394 . . . alleles " T C"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL193164.1 samtools variation 386525 386525 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 40 ; known ; N/A GL193164.1 samtools variation 387978 387978 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193164.1 samtools variation 390192 390192 . . . alleles " T C"; frequencies " 0.690140845070423 0.30784708249497"; depth 497 ; known ; synonymous GL193164.1 samtools variation 390334 390334 . . . alleles " C T"; frequencies " 0.710982658959538 0.289017341040462"; depth 346 ; known ; N/A GL193164.1 samtools variation 390378 390378 . . . alleles " T C"; frequencies " 0.232558139534884 0.767441860465116"; depth 258 ; known ; N/A GL193164.1 samtools variation 390641 390641 . . . alleles " G A"; frequencies " 0.244705882352941 0.755294117647059"; depth 425 ; known ; N/A GL193164.1 samtools variation 391026 391026 . . . alleles " G A"; frequencies " 0.716814159292035 0.283185840707965"; depth 113 ; known ; N/A GL193164.1 samtools variation 391156 391156 . . . alleles " G A"; frequencies " 0.551440329218107 0.448559670781893"; depth 243 ; known ; N/A GL193164.1 samtools variation 391198 391198 . . . alleles " C T"; frequencies " 0.612676056338028 0.387323943661972"; depth 142 ; unknown ; N/A GL193164.1 samtools variation 391202 391202 . . . alleles " C T"; frequencies " 0.598684210526316 0.401315789473684"; depth 152 ; unknown ; N/A GL193164.1 samtools variation 404858 404858 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193164.1 samtools variation 443752 443752 . . . alleles " T C"; frequencies " 0.798780487804878 0.201219512195122"; depth 328 ; unknown ; synonymous GL193164.1 samtools variation 443854 443854 . . . alleles " C T"; frequencies " 0.794444444444444 0.205555555555556"; depth 180 ; unknown ; synonymous GL193164.1 samtools variation 444366 444366 . . . alleles " G T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193164.1 samtools variation 524398 524398 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 63 ; unknown ; N/A GL193164.1 samtools variation 537291 537291 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; N/A GL193164.1 samtools variation 537324 537324 . . . alleles " G A"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193164.1 samtools variation 542176 542176 . . . alleles " T C"; frequencies " 0.520833333333333 0.479166666666667"; depth 48 ; unknown ; N/A GL193164.1 samtools variation 543392 543392 . . . alleles " T G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL193164.1 samtools variation 543411 543411 . . . alleles " T A"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL193164.1 samtools variation 726219 726219 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193164.1 samtools variation 737179 737179 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193166.1 samtools variation 69150 69150 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL193166.1 samtools variation 73338 73338 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193167.1 samtools variation 267198 267198 . . . alleles " A T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193167.1 samtools variation 390859 390859 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL193167.1 samtools variation 408447 408447 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193167.1 samtools variation 418347 418347 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL193167.1 samtools variation 431939 431939 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193167.1 samtools variation 444133 444133 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193167.1 samtools variation 526993 526993 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 57 ; known ; N/A GL193167.1 samtools variation 528141 528141 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193167.1 samtools variation 567854 567854 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193167.1 samtools variation 607200 607200 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 253 ; unknown ; N/A GL193167.1 samtools variation 607559 607559 . . . alleles " G C"; frequencies " 0.46046511627907 0.53953488372093"; depth 215 ; unknown ; N/A GL193167.1 samtools variation 683797 683797 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193167.1 samtools variation 690561 690561 . . . alleles " G C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL193167.1 samtools variation 691236 691236 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193167.1 samtools variation 691513 691513 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL193167.1 samtools variation 691555 691555 . . . alleles " A G"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; known ; N/A GL193167.1 samtools variation 744750 744750 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 22 ; known ; synonymous GL193167.1 samtools variation 744852 744852 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; known ; synonymous GL193167.1 samtools variation 791154 791154 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193167.1 samtools variation 811623 811623 . . . alleles " G A"; frequencies " 0.536842105263158 0.463157894736842"; depth 190 ; known ; synonymous GL193167.1 samtools variation 840568 840568 . . . alleles " G T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193170.1 samtools variation 219198 219198 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; synonymous GL193170.1 samtools variation 221254 221254 . . . alleles " G A"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; non-synonymous GL193170.1 samtools variation 493816 493816 . . . alleles " C A"; frequencies " 0.653846153846154 0.346153846153846"; depth 52 ; unknown ; N/A GL193170.1 samtools variation 494113 494113 . . . alleles " G C"; frequencies " 0.252173913043478 0.747826086956522"; depth 115 ; unknown ; N/A GL193170.1 samtools variation 494580 494580 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193170.1 samtools variation 495766 495766 . . . alleles " A G"; frequencies " 0.340909090909091 0.659090909090909"; depth 44 ; unknown ; N/A GL193170.1 samtools variation 495883 495883 . . . alleles " G T"; frequencies " 0.658227848101266 0.341772151898734"; depth 79 ; unknown ; synonymous GL193170.1 samtools variation 505007 505007 . . . alleles " C T"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; synonymous GL193170.1 samtools variation 595384 595384 . . . alleles " G T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; non-synonymous GL193170.1 samtools variation 608711 608711 . . . alleles " G A"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; synonymous GL193170.1 samtools variation 610077 610077 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL193170.1 samtools variation 612461 612461 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 156 ; unknown ; N/A GL193170.1 samtools variation 614140 614140 . . . alleles " C A"; frequencies " 0.76056338028169 0.23943661971831"; depth 142 ; known ; N/A GL193170.1 samtools variation 621647 621647 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL193170.1 samtools variation 631374 631374 . . . alleles " G A"; frequencies " 0.247933884297521 0.752066115702479"; depth 121 ; known ; N/A GL193170.1 samtools variation 642817 642817 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 30 ; unknown ; non-synonymous GL193170.1 samtools variation 647291 647291 . . . alleles " C A"; frequencies " 0.295774647887324 0.704225352112676"; depth 71 ; unknown ; N/A GL193170.1 samtools variation 647364 647364 . . . alleles " C T"; frequencies " 0.296875 0.703125"; depth 64 ; unknown ; N/A GL193170.1 samtools variation 647459 647459 . . . alleles " G A"; frequencies " 0.298969072164948 0.701030927835051"; depth 97 ; unknown ; N/A GL193170.1 samtools variation 647586 647586 . . . alleles " A C"; frequencies " 0.557692307692308 0.442307692307692"; depth 52 ; unknown ; N/A GL193170.1 samtools variation 649485 649485 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193170.1 samtools variation 650560 650560 . . . alleles " A G"; frequencies " 0.392156862745098 0.607843137254902"; depth 204 ; known ; non-synonymous GL193170.1 samtools variation 657635 657635 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193170.1 samtools variation 661150 661150 . . . alleles " C G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193170.1 samtools variation 662506 662506 . . . alleles " G A"; frequencies " 0.531914893617021 0.468085106382979"; depth 47 ; unknown ; N/A GL193170.1 samtools variation 662701 662701 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL193170.1 samtools variation 664059 664059 . . . alleles " C T"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL193170.1 samtools variation 664460 664460 . . . alleles " G A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL193170.1 samtools variation 664510 664510 . . . alleles " T C"; frequencies " 0.557692307692308 0.442307692307692"; depth 52 ; unknown ; N/A GL193170.1 samtools variation 664602 664602 . . . alleles " C G"; frequencies " 0.553191489361702 0.446808510638298"; depth 47 ; unknown ; N/A GL193170.1 samtools variation 664657 664657 . . . alleles " A G"; frequencies " 0.612244897959184 0.387755102040816"; depth 49 ; unknown ; N/A GL193170.1 samtools variation 664671 664671 . . . alleles " A G"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL193170.1 samtools variation 665126 665126 . . . alleles " T G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193170.1 samtools variation 665282 665282 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; N/A GL193170.1 samtools variation 665498 665498 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; synonymous GL193170.1 samtools variation 670888 670888 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193170.1 samtools variation 672445 672445 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193170.1 samtools variation 672464 672464 . . . alleles " T A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193170.1 samtools variation 673326 673326 . . . alleles " G C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL193170.1 samtools variation 678060 678060 . . . alleles " A G"; frequencies " 0.76878612716763 0.23121387283237"; depth 173 ; unknown ; N/A GL193170.1 samtools variation 683079 683079 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193170.1 samtools variation 691935 691935 . . . alleles " A G"; frequencies " 0.747368421052632 0.252631578947368"; depth 190 ; unknown ; synonymous GL193170.1 samtools variation 718906 718906 . . . alleles " G A"; frequencies " 0.717821782178218 0.282178217821782"; depth 202 ; unknown ; N/A GL193170.1 samtools variation 719860 719860 . . . alleles " T C"; frequencies " 0.477825464949928 0.522174535050071"; depth 699 ; known ; non-synonymous GL193170.1 samtools variation 720628 720628 . . . alleles " C G"; frequencies " 0.590909090909091 0.409090909090909"; depth 132 ; unknown ; non-synonymous GL193170.1 samtools variation 722095 722095 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193170.1 samtools variation 722338 722338 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193170.1 samtools variation 723983 723983 . . . alleles " C T"; frequencies " 0.727477477477477 0.272522522522523"; depth 444 ; unknown ; synonymous GL193170.1 samtools variation 725648 725648 . . . alleles " C T"; frequencies " 0.590163934426229 0.409836065573771"; depth 61 ; unknown ; N/A GL193170.1 samtools variation 728533 728533 . . . alleles " G A"; frequencies " 0.549019607843137 0.450980392156863"; depth 102 ; unknown ; synonymous GL193170.1 samtools variation 728608 728608 . . . alleles " G A"; frequencies " 0.514285714285714 0.485714285714286"; depth 70 ; unknown ; synonymous GL193170.1 samtools variation 728671 728671 . . . alleles " G A"; frequencies " 0.587719298245614 0.412280701754386"; depth 114 ; unknown ; synonymous GL193170.1 samtools variation 730147 730147 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193170.1 samtools variation 732342 732342 . . . alleles " C T"; frequencies " 0.508021390374332 0.491978609625668"; depth 187 ; unknown ; non-synonymous GL193170.1 samtools variation 732735 732735 . . . alleles " C T"; frequencies " 0.73 0.27"; depth 100 ; unknown ; non-synonymous GL193170.1 samtools variation 739019 739019 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 104 ; unknown ; synonymous GL193170.1 samtools variation 748495 748495 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193170.1 samtools variation 864530 864530 . . . alleles " C T"; frequencies " 0.4640434192673 0.5359565807327"; depth 737 ; unknown ; N/A GL193170.1 samtools variation 865581 865581 . . . alleles " G A"; frequencies " 0.760233918128655 0.239766081871345"; depth 171 ; unknown ; N/A GL193170.1 samtools variation 865779 865779 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 75 ; unknown ; N/A GL193170.1 samtools variation 865801 865801 . . . alleles " T C"; frequencies " 0.569230769230769 0.430769230769231"; depth 65 ; unknown ; N/A GL193170.1 samtools variation 865829 865829 . . . alleles " T C"; frequencies " 0.754716981132076 0.245283018867925"; depth 53 ; unknown ; N/A GL193170.1 samtools variation 866076 866076 . . . alleles " T C"; frequencies " 0.542372881355932 0.457627118644068"; depth 59 ; unknown ; N/A GL193170.1 samtools variation 868254 868254 . . . alleles " C G"; frequencies " 0.453488372093023 0.543604651162791"; depth 344 ; unknown ; N/A GL193170.1 samtools variation 868473 868473 . . . alleles " C T"; frequencies " 0.381818181818182 0.618181818181818"; depth 55 ; known ; synonymous GL193170.1 samtools variation 869528 869528 . . . alleles " A G"; frequencies " 0.560975609756098 0.439024390243902"; depth 123 ; unknown ; N/A GL193170.1 samtools variation 869791 869791 . . . alleles " C A"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL193170.1 samtools variation 874181 874181 . . . alleles " A G"; frequencies " 0.386363636363636 0.613636363636364"; depth 44 ; known ; N/A GL193170.1 samtools variation 874268 874268 . . . alleles " T A"; frequencies " 0.333333333333333 0.666666666666667"; depth 39 ; known ; N/A GL193170.1 samtools variation 874391 874391 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL193170.1 samtools variation 874459 874459 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL193170.1 samtools variation 874477 874477 . . . alleles " A G"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL193170.1 samtools variation 874686 874686 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL193170.1 samtools variation 874902 874902 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; known ; N/A GL193170.1 samtools variation 875198 875198 . . . alleles " A G"; frequencies " 0.73469387755102 0.26530612244898"; depth 49 ; known ; N/A GL193170.1 samtools variation 875231 875231 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL193170.1 samtools variation 875773 875773 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL193170.1 samtools variation 875801 875801 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL193170.1 samtools variation 876150 876150 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193170.1 samtools variation 876524 876524 . . . alleles " C A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193170.1 samtools variation 876642 876642 . . . alleles " A G"; frequencies " 0.28125 0.71875"; depth 32 ; known ; N/A GL193173.1 samtools variation 316345 316345 . . . alleles " T G"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; synonymous GL193173.1 samtools variation 329314 329314 . . . alleles " G C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL193173.1 samtools variation 330247 330247 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193173.1 samtools variation 331242 331242 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193173.1 samtools variation 335545 335545 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193173.1 samtools variation 336041 336041 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193173.1 samtools variation 341212 341212 . . . alleles " G T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193173.1 samtools variation 346172 346172 . . . alleles " G C"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL193173.1 samtools variation 346726 346726 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 50 ; unknown ; N/A GL193173.1 samtools variation 355260 355260 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193173.1 samtools variation 356462 356462 . . . alleles " T C"; frequencies " 0.748878923766816 0.251121076233184"; depth 223 ; unknown ; synonymous GL193173.1 samtools variation 357618 357618 . . . alleles " G C"; frequencies " 0.247863247863248 0.752136752136752"; depth 117 ; known ; non-synonymous GL193173.1 samtools variation 357835 357835 . . . alleles " T C"; frequencies " 0.589285714285714 0.410714285714286"; depth 112 ; known ; non-synonymous GL193173.1 samtools variation 361659 361659 . . . alleles " A G"; frequencies " 0.726190476190476 0.273809523809524"; depth 84 ; unknown ; N/A GL193173.1 samtools variation 361783 361783 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL193173.1 samtools variation 362268 362268 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 92 ; known ; N/A GL193173.1 samtools variation 362327 362327 . . . alleles " A G"; frequencies " 0.311688311688312 0.688311688311688"; depth 77 ; known ; N/A GL193173.1 samtools variation 362455 362455 . . . alleles " T C"; frequencies " 0.68 0.32"; depth 75 ; known ; N/A GL193173.1 samtools variation 362542 362542 . . . alleles " T C"; frequencies " 0.410714285714286 0.589285714285714"; depth 56 ; known ; N/A GL193173.1 samtools variation 362607 362607 . . . alleles " G A"; frequencies " 0.409090909090909 0.590909090909091"; depth 88 ; known ; N/A GL193173.1 samtools variation 362651 362651 . . . alleles " A G"; frequencies " 0.426966292134831 0.573033707865168"; depth 89 ; known ; N/A GL193173.1 samtools variation 379839 379839 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL193173.1 samtools variation 380666 380666 . . . alleles " G C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193173.1 samtools variation 383042 383042 . . . alleles " T C"; frequencies " 0.526132404181185 0.473867595818815"; depth 287 ; known ; non-synonymous GL193173.1 samtools variation 384317 384317 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193173.1 samtools variation 392205 392205 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193173.1 samtools variation 392245 392245 . . . alleles " T A"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL193173.1 samtools variation 398823 398823 . . . alleles " C A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193174.1 samtools variation 284687 284687 . . . alleles " G T"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; synonymous GL193175.1 samtools variation 296025 296025 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193175.1 samtools variation 296834 296834 . . . alleles " T C"; frequencies " 0.688888888888889 0.311111111111111"; depth 45 ; unknown ; N/A GL193175.1 samtools variation 297632 297632 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193175.1 samtools variation 310554 310554 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193175.1 samtools variation 327742 327742 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193175.1 samtools variation 338410 338410 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193175.1 samtools variation 347666 347666 . . . alleles " T C"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; known ; N/A GL193175.1 samtools variation 347777 347777 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; known ; N/A GL193175.1 samtools variation 348155 348155 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193175.1 samtools variation 348544 348544 . . . alleles " G A"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; known ; N/A GL193175.1 samtools variation 348935 348935 . . . alleles " T C"; frequencies " 0.530612244897959 0.469387755102041"; depth 49 ; known ; N/A GL193175.1 samtools variation 349263 349263 . . . alleles " C T"; frequencies " 0.682539682539683 0.317460317460317"; depth 63 ; unknown ; N/A GL193175.1 samtools variation 349619 349619 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; known ; N/A GL193175.1 samtools variation 349672 349672 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL193175.1 samtools variation 350203 350203 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL193175.1 samtools variation 369893 369893 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL193175.1 samtools variation 369898 369898 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193175.1 samtools variation 369923 369923 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL193175.1 samtools variation 384709 384709 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193175.1 samtools variation 434508 434508 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193175.1 samtools variation 504777 504777 . . . alleles " G A"; frequencies " 0.68609022556391 0.31390977443609"; depth 532 ; known ; synonymous GL193175.1 samtools variation 505849 505849 . . . alleles " G C"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; known ; N/A GL193175.1 samtools variation 506759 506759 . . . alleles " G A"; frequencies " 0.232073011734029 0.767926988265971"; depth 767 ; known ; N/A GL193175.1 samtools variation 519481 519481 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193175.1 samtools variation 519484 519484 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL193176.1 samtools variation 427323 427323 . . . alleles " A G"; frequencies " 0.52027027027027 0.47972972972973"; depth 148 ; unknown ; N/A GL193176.1 samtools variation 427549 427549 . . . alleles " T C"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; N/A GL193176.1 samtools variation 429375 429375 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193177.1 samtools variation 277838 277838 . . . alleles " T C"; frequencies " 0.73015873015873 0.26984126984127"; depth 63 ; unknown ; synonymous GL193177.1 samtools variation 290882 290882 . . . alleles " C A"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; non-synonymous GL193177.1 samtools variation 294467 294467 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 30 ; unknown ; synonymous GL193177.1 samtools variation 297491 297491 . . . alleles " G C"; frequencies " 0.697674418604651 0.302325581395349"; depth 43 ; unknown ; non-synonymous GL193177.1 samtools variation 584530 584530 . . . alleles " A G"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; known ; N/A GL193179.1 samtools variation 100816 100816 . . . alleles " G A"; frequencies " 0.418918918918919 0.581081081081081"; depth 148 ; known ; synonymous GL193179.1 samtools variation 102924 102924 . . . alleles " T C"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; known ; non-synonymous GL193179.1 samtools variation 103692 103692 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; known ; non-synonymous GL193179.1 samtools variation 106110 106110 . . . alleles " C A"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; known ; non-synonymous GL193180.1 samtools variation 405154 405154 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; synonymous GL193180.1 samtools variation 406024 406024 . . . alleles " C G"; frequencies " 0.48695652173913 0.51304347826087"; depth 115 ; unknown ; synonymous GL193180.1 samtools variation 427429 427429 . . . alleles " C A"; frequencies " 0.633333333333333 0.366666666666667"; depth 60 ; unknown ; N/A GL193180.1 samtools variation 428335 428335 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193180.1 samtools variation 428616 428616 . . . alleles " G C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193180.1 samtools variation 430874 430874 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL193180.1 samtools variation 431106 431106 . . . alleles " T C"; frequencies " 0.639344262295082 0.360655737704918"; depth 122 ; unknown ; N/A GL193180.1 samtools variation 431143 431143 . . . alleles " T G"; frequencies " 0.680327868852459 0.319672131147541"; depth 122 ; unknown ; N/A GL193180.1 samtools variation 431196 431196 . . . alleles " C A"; frequencies " 0.606837606837607 0.393162393162393"; depth 117 ; unknown ; N/A GL193180.1 samtools variation 431695 431695 . . . alleles " C G"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; unknown ; N/A GL193180.1 samtools variation 432933 432933 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL193180.1 samtools variation 432942 432942 . . . alleles " G A"; frequencies " 0.658536585365854 0.341463414634146"; depth 41 ; unknown ; N/A GL193180.1 samtools variation 436647 436647 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193182.1 samtools variation 480365 480365 . . . alleles " T C"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; known ; N/A GL193182.1 samtools variation 480791 480791 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193182.1 samtools variation 482563 482563 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193182.1 samtools variation 485393 485393 . . . alleles " T A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL193182.1 samtools variation 488169 488169 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL193182.1 samtools variation 488193 488193 . . . alleles " A G"; frequencies " 0.36 0.64"; depth 25 ; known ; N/A GL193182.1 samtools variation 488499 488499 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193182.1 samtools variation 489438 489438 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193182.1 samtools variation 489494 489494 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL193182.1 samtools variation 489900 489900 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL193182.1 samtools variation 490558 490558 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193182.1 samtools variation 492593 492593 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193182.1 samtools variation 494018 494018 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; unknown ; synonymous GL193182.1 samtools variation 494268 494268 . . . alleles " C T"; frequencies " 0.338461538461538 0.661538461538462"; depth 65 ; known ; N/A GL193182.1 samtools variation 497385 497385 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193182.1 samtools variation 497493 497493 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193182.1 samtools variation 497607 497607 . . . alleles " C A"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL193182.1 samtools variation 498850 498850 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 48 ; known ; N/A GL193182.1 samtools variation 499622 499622 . . . alleles " G A"; frequencies " 0.609375 0.390625"; depth 64 ; unknown ; N/A GL193182.1 samtools variation 503784 503784 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193182.1 samtools variation 505882 505882 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193182.1 samtools variation 539152 539152 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; non-synonymous GL193182.1 samtools variation 539274 539274 . . . alleles " T C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; synonymous GL193182.1 samtools variation 539325 539325 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL193182.1 samtools variation 544931 544931 . . . alleles " A G"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; synonymous GL193182.1 samtools variation 556371 556371 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193182.1 samtools variation 562623 562623 . . . alleles " T C"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193182.1 samtools variation 562704 562704 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL193182.1 samtools variation 563488 563488 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193182.1 samtools variation 563532 563532 . . . alleles " G A"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL193184.1 samtools variation 28555 28555 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; synonymous GL193184.1 samtools variation 458963 458963 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 60 ; known ; N/A GL193185.1 samtools variation 12656 12656 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193185.1 samtools variation 18580 18580 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193185.1 samtools variation 19196 19196 . . . alleles " C T"; frequencies " 0.388349514563107 0.601941747572815"; depth 103 ; unknown ; synonymous GL193185.1 samtools variation 251004 251004 . . . alleles " A G"; frequencies " 0.408450704225352 0.591549295774648"; depth 142 ; unknown ; synonymous GL193185.1 samtools variation 290793 290793 . . . alleles " G A"; frequencies " 0.647577092511013 0.352422907488987"; depth 227 ; unknown ; non-synonymous GL193185.1 samtools variation 293633 293633 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL193185.1 samtools variation 303339 303339 . . . alleles " C T"; frequencies " 0.469135802469136 0.530864197530864"; depth 81 ; unknown ; synonymous GL193185.1 samtools variation 303384 303384 . . . alleles " G C"; frequencies " 0.441176470588235 0.558823529411765"; depth 68 ; unknown ; non-synonymous GL193185.1 samtools variation 311878 311878 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 102 ; unknown ; non-synonymous GL193185.1 samtools variation 326267 326267 . . . alleles " A G"; frequencies " 0.355263157894737 0.644736842105263"; depth 76 ; unknown ; synonymous GL193186.1 samtools variation 445947 445947 . . . alleles " C G"; frequencies " 0.772413793103448 0.227586206896552"; depth 145 ; unknown ; non-synonymous GL193186.1 samtools variation 447092 447092 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193186.1 samtools variation 447998 447998 . . . alleles " G A"; frequencies " 0.776223776223776 0.223776223776224"; depth 143 ; unknown ; non-synonymous GL193186.1 samtools variation 451180 451180 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193186.1 samtools variation 454904 454904 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193186.1 samtools variation 456152 456152 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193187.1 samtools variation 492075 492075 . . . alleles " C A"; frequencies " 0.2 0.8"; depth 40 ; unknown ; N/A GL193187.1 samtools variation 497560 497560 . . . alleles " T C"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; N/A GL193187.1 samtools variation 550814 550814 . . . alleles " A G"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL193187.1 samtools variation 551787 551787 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193187.1 samtools variation 563259 563259 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193187.1 samtools variation 574876 574876 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL193187.1 samtools variation 658226 658226 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 90 ; unknown ; non-synonymous GL193187.1 samtools variation 695092 695092 . . . alleles " C T"; frequencies " 0.674698795180723 0.325301204819277"; depth 83 ; unknown ; non-synonymous GL193187.1 samtools variation 700815 700815 . . . alleles " T C"; frequencies " 0.563218390804598 0.436781609195402"; depth 87 ; unknown ; synonymous GL193187.1 samtools variation 704533 704533 . . . alleles " A G"; frequencies " 0.763005780346821 0.236994219653179"; depth 173 ; unknown ; synonymous GL193187.1 samtools variation 704552 704552 . . . alleles " A G"; frequencies " 0.765714285714286 0.234285714285714"; depth 175 ; unknown ; non-synonymous GL193187.1 samtools variation 710370 710370 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193187.1 samtools variation 715692 715692 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193187.1 samtools variation 715705 715705 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193187.1 samtools variation 718835 718835 . . . alleles " G A"; frequencies " 0.417391304347826 0.582608695652174"; depth 230 ; unknown ; synonymous GL193187.1 samtools variation 883915 883915 . . . alleles " T C"; frequencies " 0.285714285714286 0.642857142857143"; depth 14 ; known ; N/A GL193188.1 samtools variation 1528 1528 . . . alleles " A C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193188.1 samtools variation 20882 20882 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193188.1 samtools variation 51051 51051 . . . alleles " C T"; frequencies " 0.619926199261993 0.380073800738007"; depth 271 ; unknown ; non-synonymous GL193188.1 samtools variation 56316 56316 . . . alleles " C T"; frequencies " 0.619289340101523 0.380710659898477"; depth 197 ; unknown ; synonymous GL193188.1 samtools variation 58158 58158 . . . alleles " C G"; frequencies " 0.777777777777778 0.222222222222222"; depth 54 ; unknown ; N/A GL193188.1 samtools variation 58248 58248 . . . alleles " G A"; frequencies " 0.626373626373626 0.373626373626374"; depth 91 ; unknown ; N/A GL193188.1 samtools variation 61118 61118 . . . alleles " G C"; frequencies " 0.215686274509804 0.784313725490196"; depth 357 ; unknown ; non-synonymous GL193188.1 samtools variation 63307 63307 . . . alleles " A G"; frequencies " 0.657407407407407 0.342592592592593"; depth 108 ; known ; N/A GL193188.1 samtools variation 78465 78465 . . . alleles " G A"; frequencies " 0.795394154118689 0.202834366696191"; depth 1129 ; unknown ; synonymous GL193188.1 samtools variation 79050 79050 . . . alleles " T C"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; N/A GL193188.1 samtools variation 80204 80204 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 52 ; known ; N/A GL193188.1 samtools variation 83169 83169 . . . alleles " A G"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; unknown ; N/A GL193188.1 samtools variation 84013 84013 . . . alleles " T A"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; N/A GL193188.1 samtools variation 84054 84054 . . . alleles " G A"; frequencies " 0.239130434782609 0.760869565217391"; depth 46 ; known ; N/A GL193188.1 samtools variation 92225 92225 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; known ; N/A GL193188.1 samtools variation 94071 94071 . . . alleles " A T"; frequencies " 0.477477477477477 0.522522522522523"; depth 111 ; known ; N/A GL193188.1 samtools variation 94453 94453 . . . alleles " C T"; frequencies " 0.797297297297297 0.202702702702703"; depth 74 ; unknown ; N/A GL193188.1 samtools variation 95814 95814 . . . alleles " G C"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL193188.1 samtools variation 102565 102565 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; N/A GL193188.1 samtools variation 102595 102595 . . . alleles " C G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL193188.1 samtools variation 102707 102707 . . . alleles " A G"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; known ; N/A GL193188.1 samtools variation 103428 103428 . . . alleles " A G"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; known ; N/A GL193188.1 samtools variation 104777 104777 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193188.1 samtools variation 108847 108847 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193188.1 samtools variation 109290 109290 . . . alleles " C A"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL193188.1 samtools variation 109631 109631 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL193188.1 samtools variation 109736 109736 . . . alleles " C T"; frequencies " 0.430348258706468 0.569651741293532"; depth 402 ; known ; non-synonymous GL193188.1 samtools variation 113679 113679 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193188.1 samtools variation 115764 115764 . . . alleles " T C"; frequencies " 0.282051282051282 0.717948717948718"; depth 78 ; known ; N/A GL193188.1 samtools variation 119997 119997 . . . alleles " A G"; frequencies " 0.489795918367347 0.510204081632653"; depth 98 ; unknown ; N/A GL193188.1 samtools variation 167160 167160 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193188.1 samtools variation 174167 174167 . . . alleles " G A"; frequencies " 0.255813953488372 0.744186046511628"; depth 43 ; known ; N/A GL193188.1 samtools variation 178411 178411 . . . alleles " T C"; frequencies " 0.653846153846154 0.346153846153846"; depth 52 ; unknown ; N/A GL193188.1 samtools variation 179827 179827 . . . alleles " A G"; frequencies " 0.607361963190184 0.392638036809816"; depth 163 ; known ; N/A GL193188.1 samtools variation 181661 181661 . . . alleles " C T"; frequencies " 0.300847457627119 0.699152542372881"; depth 236 ; known ; non-synonymous GL193188.1 samtools variation 181692 181692 . . . alleles " A G"; frequencies " 0.255972696245734 0.744027303754266"; depth 293 ; known ; synonymous GL193188.1 samtools variation 181697 181697 . . . alleles " T C"; frequencies " 0.238970588235294 0.761029411764706"; depth 272 ; unknown ; non-synonymous GL193188.1 samtools variation 182664 182664 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193188.1 samtools variation 225210 225210 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193188.1 samtools variation 234218 234218 . . . alleles " C A"; frequencies " 0.631578947368421 0.368421052631579"; depth 57 ; unknown ; N/A GL193188.1 samtools variation 240830 240830 . . . alleles " G A"; frequencies " 0.6796875 0.3203125"; depth 128 ; unknown ; synonymous GL193188.1 samtools variation 250819 250819 . . . alleles " A G"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL193188.1 samtools variation 250828 250828 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193188.1 samtools variation 251065 251065 . . . alleles " T C"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL193188.1 samtools variation 253111 253111 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; synonymous GL193188.1 samtools variation 505925 505925 . . . alleles " T C"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; known ; N/A GL193188.1 samtools variation 507296 507296 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193188.1 samtools variation 507860 507860 . . . alleles " G A"; frequencies " 0.788732394366197 0.211267605633803"; depth 71 ; known ; N/A GL193188.1 samtools variation 543369 543369 . . . alleles " C T"; frequencies " 0.660714285714286 0.339285714285714"; depth 56 ; known ; synonymous GL193188.1 samtools variation 543874 543874 . . . alleles " A G"; frequencies " 0.302083333333333 0.697916666666667"; depth 96 ; known ; synonymous GL193188.1 samtools variation 596198 596198 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL193188.1 samtools variation 620406 620406 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193188.1 samtools variation 622400 622400 . . . alleles " G C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193188.1 samtools variation 622816 622816 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL193188.1 samtools variation 622830 622830 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL193188.1 samtools variation 623747 623747 . . . alleles " G T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193188.1 samtools variation 624526 624526 . . . alleles " A T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193188.1 samtools variation 626057 626057 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL193188.1 samtools variation 672161 672161 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193188.1 samtools variation 683013 683013 . . . alleles " T C"; frequencies " 0.327503974562798 0.670906200317965"; depth 629 ; known ; N/A GL193188.1 samtools variation 686725 686725 . . . alleles " G A"; frequencies " 0.444816053511706 0.555183946488294"; depth 299 ; unknown ; synonymous GL193188.1 samtools variation 688569 688569 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL193188.1 samtools variation 690941 690941 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193188.1 samtools variation 691586 691586 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL193188.1 samtools variation 697424 697424 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 28 ; unknown ; N/A GL193188.1 samtools variation 697857 697857 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193188.1 samtools variation 702488 702488 . . . alleles " G A"; frequencies " 0.244897959183673 0.755102040816326"; depth 147 ; known ; N/A GL193188.1 samtools variation 705495 705495 . . . alleles " T A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193188.1 samtools variation 718406 718406 . . . alleles " C G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL193188.1 samtools variation 720871 720871 . . . alleles " C T"; frequencies " 0.691489361702128 0.308510638297872"; depth 94 ; unknown ; N/A GL193188.1 samtools variation 757796 757796 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193188.1 samtools variation 770896 770896 . . . alleles " G A"; frequencies " 0.696428571428571 0.303571428571429"; depth 56 ; known ; N/A GL193188.1 samtools variation 771848 771848 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; known ; N/A GL193188.1 samtools variation 771858 771858 . . . alleles " T C"; frequencies " 0.673076923076923 0.326923076923077"; depth 52 ; known ; N/A GL193188.1 samtools variation 772050 772050 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; known ; synonymous GL193188.1 samtools variation 772407 772407 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; known ; synonymous GL193188.1 samtools variation 772893 772893 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193188.1 samtools variation 784137 784137 . . . alleles " C T"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL193188.1 samtools variation 785521 785521 . . . alleles " T C"; frequencies " 0.664596273291925 0.335403726708075"; depth 161 ; known ; synonymous GL193188.1 samtools variation 785649 785649 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193188.1 samtools variation 786346 786346 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 57 ; known ; N/A GL193188.1 samtools variation 787747 787747 . . . alleles " A C"; frequencies " 0.525641025641026 0.474358974358974"; depth 78 ; known ; N/A GL193188.1 samtools variation 798703 798703 . . . alleles " G A"; frequencies " 0.554744525547445 0.445255474452555"; depth 137 ; unknown ; synonymous GL193188.1 samtools variation 801116 801116 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL193188.1 samtools variation 801444 801444 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193188.1 samtools variation 803294 803294 . . . alleles " G A"; frequencies " 0.355769230769231 0.644230769230769"; depth 208 ; known ; synonymous GL193188.1 samtools variation 803839 803839 . . . alleles " C A"; frequencies " 0.595744680851064 0.404255319148936"; depth 94 ; unknown ; non-synonymous GL193188.1 samtools variation 804267 804267 . . . alleles " A G"; frequencies " 0.785185185185185 0.214814814814815"; depth 135 ; unknown ; N/A GL193188.1 samtools variation 804655 804655 . . . alleles " T C"; frequencies " 0.657894736842105 0.342105263157895"; depth 418 ; unknown ; N/A GL193188.1 samtools variation 804873 804873 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 90 ; known ; N/A GL193188.1 samtools variation 805528 805528 . . . alleles " G A"; frequencies " 0.492957746478873 0.507042253521127"; depth 71 ; known ; synonymous GL193188.1 samtools variation 807944 807944 . . . alleles " A G"; frequencies " 0.548780487804878 0.445121951219512"; depth 164 ; unknown ; non-synonymous GL193188.1 samtools variation 808305 808305 . . . alleles " A G"; frequencies " 0.533039647577093 0.466960352422908"; depth 227 ; unknown ; synonymous GL193188.1 samtools variation 809047 809047 . . . alleles " C T"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; unknown ; N/A GL193188.1 samtools variation 809494 809494 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193188.1 samtools variation 809949 809949 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL193188.1 samtools variation 840189 840189 . . . alleles " C T"; frequencies " 0.229253112033195 0.770746887966805"; depth 964 ; known ; non-synonymous GL193188.1 samtools variation 840554 840554 . . . alleles " A T"; frequencies " 0.298136645962733 0.695652173913043"; depth 161 ; unknown ; synonymous GL193188.1 samtools variation 840569 840569 . . . alleles " G T"; frequencies " 0.214723926380368 0.785276073619632"; depth 163 ; unknown ; synonymous GL193188.1 samtools variation 841289 841289 . . . alleles " T C"; frequencies " 0.762091503267974 0.237908496732026"; depth 765 ; known ; N/A GL193188.1 samtools variation 841358 841358 . . . alleles " G T"; frequencies " 0.775609756097561 0.224390243902439"; depth 615 ; known ; N/A GL193188.1 samtools variation 841682 841682 . . . alleles " A C"; frequencies " 0.697892271662763 0.302107728337237"; depth 427 ; unknown ; N/A GL193188.1 samtools variation 861988 861988 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; synonymous GL193188.1 samtools variation 876274 876274 . . . alleles " C T"; frequencies " 0.230169050715215 0.769830949284785"; depth 769 ; known ; N/A GL193188.1 samtools variation 879217 879217 . . . alleles " C A"; frequencies " 0.798701298701299 0.201298701298701"; depth 154 ; known ; N/A GL193188.1 samtools variation 879290 879290 . . . alleles " A T"; frequencies " 0.787037037037037 0.212962962962963"; depth 108 ; known ; N/A GL193190.1 samtools variation 1184 1184 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193190.1 samtools variation 17847 17847 . . . alleles " T C"; frequencies " 0.258333333333333 0.741666666666667"; depth 120 ; known ; synonymous GL193190.1 samtools variation 18492 18492 . . . alleles " C T"; frequencies " 0.702702702702703 0.297297297297297"; depth 222 ; unknown ; synonymous GL193190.1 samtools variation 18528 18528 . . . alleles " T C"; frequencies " 0.243386243386243 0.756613756613757"; depth 189 ; known ; synonymous GL193190.1 samtools variation 30767 30767 . . . alleles " T C"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL193190.1 samtools variation 32149 32149 . . . alleles " T G"; frequencies " 0.378787878787879 0.621212121212121"; depth 132 ; known ; N/A GL193190.1 samtools variation 32279 32279 . . . alleles " G A"; frequencies " 0.495798319327731 0.504201680672269"; depth 119 ; known ; N/A GL193190.1 samtools variation 38776 38776 . . . alleles " C A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193190.1 samtools variation 93403 93403 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; N/A GL193190.1 samtools variation 93828 93828 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193190.1 samtools variation 98974 98974 . . . alleles " T G"; frequencies " 0.487179487179487 0.512820512820513"; depth 117 ; known ; synonymous GL193190.1 samtools variation 99331 99331 . . . alleles " A G"; frequencies " 0.253164556962025 0.746835443037975"; depth 79 ; known ; synonymous GL193190.1 samtools variation 205213 205213 . . . alleles " C T"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL193190.1 samtools variation 206102 206102 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193190.1 samtools variation 295987 295987 . . . alleles " T G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; synonymous GL193191.1 samtools variation 204335 204335 . . . alleles " C T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL193191.1 samtools variation 307880 307880 . . . alleles " A T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193191.1 samtools variation 501418 501418 . . . alleles " C A"; frequencies " 0.476190476190476 0.523809523809524"; depth 63 ; unknown ; N/A GL193191.1 samtools variation 807282 807282 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193191.1 samtools variation 811960 811960 . . . alleles " C T"; frequencies " 0.258620689655172 0.741379310344828"; depth 116 ; known ; N/A GL193192.1 samtools variation 415185 415185 . . . alleles " A C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193192.1 samtools variation 424468 424468 . . . alleles " A G"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL193192.1 samtools variation 429527 429527 . . . alleles " C T"; frequencies " 0.22264631043257 0.774809160305344"; depth 786 ; known ; N/A GL193192.1 samtools variation 432134 432134 . . . alleles " C T"; frequencies " 0.35781041388518 0.64218958611482"; depth 749 ; known ; N/A GL193192.1 samtools variation 432486 432486 . . . alleles " T C"; frequencies " 0.654961832061069 0.345038167938931"; depth 655 ; unknown ; N/A GL193192.1 samtools variation 432830 432830 . . . alleles " G A"; frequencies " 0.344827586206897 0.655172413793103"; depth 145 ; known ; N/A GL193192.1 samtools variation 433398 433398 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 161 ; known ; N/A GL193192.1 samtools variation 435922 435922 . . . alleles " C A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL193192.1 samtools variation 496326 496326 . . . alleles " C T"; frequencies " 0.525423728813559 0.474576271186441"; depth 118 ; unknown ; N/A GL193192.1 samtools variation 497033 497033 . . . alleles " C T"; frequencies " 0.42 0.58"; depth 100 ; known ; N/A GL193192.1 samtools variation 497327 497327 . . . alleles " A G"; frequencies " 0.348837209302326 0.651162790697674"; depth 43 ; known ; N/A GL193192.1 samtools variation 501143 501143 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193192.1 samtools variation 513709 513709 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193192.1 samtools variation 516515 516515 . . . alleles " C G"; frequencies " 0.415730337078652 0.584269662921348"; depth 89 ; known ; synonymous GL193192.1 samtools variation 516539 516539 . . . alleles " C T"; frequencies " 0.784090909090909 0.215909090909091"; depth 88 ; unknown ; synonymous GL193192.1 samtools variation 516796 516796 . . . alleles " T G"; frequencies " 0.513513513513513 0.486486486486487"; depth 37 ; known ; N/A GL193192.1 samtools variation 697129 697129 . . . alleles " C T"; frequencies " 0.527777777777778 0.472222222222222"; depth 72 ; unknown ; N/A GL193192.1 samtools variation 697130 697130 . . . alleles " T G"; frequencies " 0.547945205479452 0.452054794520548"; depth 73 ; unknown ; N/A GL193192.1 samtools variation 703104 703104 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193192.1 samtools variation 774660 774660 . . . alleles " G A"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; known ; N/A GL193192.1 samtools variation 780299 780299 . . . alleles " C T"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; known ; N/A GL193192.1 samtools variation 780351 780351 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; known ; N/A GL193192.1 samtools variation 781004 781004 . . . alleles " T C"; frequencies " 0.227979274611399 0.772020725388601"; depth 193 ; known ; N/A GL193192.1 samtools variation 782400 782400 . . . alleles " A G"; frequencies " 0.247311827956989 0.752688172043011"; depth 93 ; known ; N/A GL193192.1 samtools variation 782487 782487 . . . alleles " G A"; frequencies " 0.307984790874525 0.692015209125475"; depth 263 ; unknown ; N/A GL193192.1 samtools variation 782638 782638 . . . alleles " C G"; frequencies " 0.232142857142857 0.767857142857143"; depth 56 ; known ; N/A GL193192.1 samtools variation 782718 782718 . . . alleles " T C"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; known ; N/A GL193192.1 samtools variation 783053 783053 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL193192.1 samtools variation 783714 783714 . . . alleles " T G"; frequencies " 0.477272727272727 0.522727272727273"; depth 44 ; known ; N/A GL193192.1 samtools variation 783909 783909 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL193192.1 samtools variation 784028 784028 . . . alleles " G C"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL193192.1 samtools variation 784426 784426 . . . alleles " A G"; frequencies " 0.431372549019608 0.568627450980392"; depth 51 ; unknown ; N/A GL193192.1 samtools variation 784428 784428 . . . alleles " T C"; frequencies " 0.42 0.58"; depth 50 ; unknown ; N/A GL193192.1 samtools variation 784492 784492 . . . alleles " A G"; frequencies " 0.425925925925926 0.574074074074074"; depth 54 ; unknown ; N/A GL193192.1 samtools variation 784633 784633 . . . alleles " G T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL193192.1 samtools variation 784687 784687 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193192.1 samtools variation 784793 784793 . . . alleles " C T"; frequencies " 0.263157894736842 0.736842105263158"; depth 57 ; unknown ; N/A GL193192.1 samtools variation 785322 785322 . . . alleles " G T"; frequencies " 0.222222222222222 0.777777777777778"; depth 36 ; unknown ; N/A GL193192.1 samtools variation 785573 785573 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 56 ; known ; N/A GL193192.1 samtools variation 786497 786497 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; unknown ; N/A GL193192.1 samtools variation 786500 786500 . . . alleles " T C"; frequencies " 0.217391304347826 0.782608695652174"; depth 46 ; known ; N/A GL193192.1 samtools variation 786598 786598 . . . alleles " C T"; frequencies " 0.387755102040816 0.612244897959184"; depth 49 ; unknown ; N/A GL193192.1 samtools variation 786854 786854 . . . alleles " G T"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; known ; N/A GL193192.1 samtools variation 787114 787114 . . . alleles " G A"; frequencies " 0.435 0.565"; depth 200 ; unknown ; N/A GL193192.1 samtools variation 787237 787237 . . . alleles " C T"; frequencies " 0.662921348314607 0.337078651685393"; depth 89 ; known ; N/A GL193192.1 samtools variation 787454 787454 . . . alleles " C T"; frequencies " 0.434210526315789 0.565789473684211"; depth 152 ; unknown ; N/A GL193192.1 samtools variation 787553 787553 . . . alleles " G A"; frequencies " 0.359281437125749 0.640718562874252"; depth 167 ; unknown ; N/A GL193192.1 samtools variation 787687 787687 . . . alleles " G A"; frequencies " 0.329268292682927 0.670731707317073"; depth 82 ; unknown ; N/A GL193192.1 samtools variation 791772 791772 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193192.1 samtools variation 792570 792570 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193192.1 samtools variation 831858 831858 . . . alleles " C T"; frequencies " 0.222222222222222 0.777777777777778"; depth 63 ; known ; N/A GL193192.1 samtools variation 831860 831860 . . . alleles " C T"; frequencies " 0.774193548387097 0.225806451612903"; depth 62 ; unknown ; N/A GL193192.1 samtools variation 832423 832423 . . . alleles " A G"; frequencies " 0.606060606060606 0.393939393939394"; depth 99 ; known ; N/A GL193192.1 samtools variation 833271 833271 . . . alleles " G A"; frequencies " 0.754385964912281 0.245614035087719"; depth 57 ; unknown ; N/A GL193192.1 samtools variation 833344 833344 . . . alleles " G A"; frequencies " 0.735483870967742 0.264516129032258"; depth 310 ; unknown ; N/A GL193192.1 samtools variation 834094 834094 . . . alleles " G A"; frequencies " 0.743055555555556 0.256944444444444"; depth 144 ; unknown ; N/A GL193192.1 samtools variation 835750 835750 . . . alleles " C A"; frequencies " 0.49438202247191 0.50561797752809"; depth 89 ; unknown ; non-synonymous GL193192.1 samtools variation 835928 835928 . . . alleles " G A"; frequencies " 0.764227642276423 0.235772357723577"; depth 123 ; unknown ; synonymous GL193192.1 samtools variation 836018 836018 . . . alleles " C T"; frequencies " 0.740088105726872 0.259911894273128"; depth 227 ; unknown ; synonymous GL193192.1 samtools variation 836246 836246 . . . alleles " C T"; frequencies " 0.726681127982646 0.27114967462039"; depth 461 ; unknown ; N/A GL193192.1 samtools variation 838244 838244 . . . alleles " A G"; frequencies " 0.430769230769231 0.569230769230769"; depth 65 ; unknown ; N/A GL193192.1 samtools variation 840753 840753 . . . alleles " T C"; frequencies " 0.353846153846154 0.646153846153846"; depth 130 ; unknown ; N/A GL193192.1 samtools variation 841020 841020 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193192.1 samtools variation 841461 841461 . . . alleles " T G"; frequencies " 0.491379310344828 0.508620689655172"; depth 232 ; known ; N/A GL193192.1 samtools variation 841701 841701 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 78 ; unknown ; N/A GL193192.1 samtools variation 841728 841728 . . . alleles " C T"; frequencies " 0.53030303030303 0.46969696969697"; depth 66 ; known ; N/A GL193192.1 samtools variation 842189 842189 . . . alleles " G A"; frequencies " 0.45679012345679 0.54320987654321"; depth 81 ; unknown ; non-synonymous GL193192.1 samtools variation 842355 842355 . . . alleles " C T"; frequencies " 0.459459459459459 0.540540540540541"; depth 37 ; unknown ; N/A GL193192.1 samtools variation 842567 842567 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193192.1 samtools variation 842608 842608 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193192.1 samtools variation 843170 843170 . . . alleles " C A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193192.1 samtools variation 843187 843187 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL193192.1 samtools variation 844560 844560 . . . alleles " G T"; frequencies " 0.586538461538462 0.413461538461538"; depth 104 ; unknown ; N/A GL193194.1 samtools variation 290889 290889 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193194.1 samtools variation 292474 292474 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL193194.1 samtools variation 293096 293096 . . . alleles " T C"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; known ; N/A GL193194.1 samtools variation 293146 293146 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 30 ; known ; N/A GL193194.1 samtools variation 295566 295566 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL193194.1 samtools variation 300821 300821 . . . alleles " G A"; frequencies " 0.789333333333333 0.210666666666667"; depth 375 ; unknown ; N/A GL193194.1 samtools variation 301473 301473 . . . alleles " C G"; frequencies " 0.783333333333333 0.216666666666667"; depth 60 ; unknown ; N/A GL193194.1 samtools variation 302651 302651 . . . alleles " C T"; frequencies " 0.56140350877193 0.43859649122807"; depth 57 ; unknown ; N/A GL193194.1 samtools variation 302900 302900 . . . alleles " G C"; frequencies " 0.721649484536082 0.278350515463918"; depth 97 ; unknown ; N/A GL193194.1 samtools variation 303255 303255 . . . alleles " G A"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; unknown ; N/A GL193194.1 samtools variation 303611 303611 . . . alleles " T C"; frequencies " 0.542857142857143 0.457142857142857"; depth 70 ; unknown ; N/A GL193194.1 samtools variation 303762 303762 . . . alleles " G C"; frequencies " 0.742424242424242 0.257575757575758"; depth 66 ; unknown ; N/A GL193194.1 samtools variation 303794 303794 . . . alleles " T C"; frequencies " 0.659574468085106 0.340425531914894"; depth 94 ; unknown ; N/A GL193194.1 samtools variation 304026 304026 . . . alleles " G C"; frequencies " 0.692607003891051 0.307392996108949"; depth 257 ; unknown ; N/A GL193194.1 samtools variation 304158 304158 . . . alleles " A C"; frequencies " 0.440298507462687 0.559701492537313"; depth 134 ; unknown ; N/A GL193194.1 samtools variation 304957 304957 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193194.1 samtools variation 305469 305469 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193194.1 samtools variation 307463 307463 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 48 ; unknown ; N/A GL193194.1 samtools variation 308605 308605 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL193194.1 samtools variation 309490 309490 . . . alleles " T G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193194.1 samtools variation 311176 311176 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193194.1 samtools variation 335429 335429 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193194.1 samtools variation 336226 336226 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193194.1 samtools variation 336837 336837 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193194.1 samtools variation 359349 359349 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193194.1 samtools variation 359964 359964 . . . alleles " T G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193194.1 samtools variation 360285 360285 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193194.1 samtools variation 363052 363052 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193194.1 samtools variation 365022 365022 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193194.1 samtools variation 365505 365505 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193194.1 samtools variation 380691 380691 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193194.1 samtools variation 381092 381092 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193194.1 samtools variation 381817 381817 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193194.1 samtools variation 384970 384970 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193194.1 samtools variation 385665 385665 . . . alleles " C A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193194.1 samtools variation 388164 388164 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; unknown ; N/A GL193194.1 samtools variation 418048 418048 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193194.1 samtools variation 419898 419898 . . . alleles " G A"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; unknown ; N/A GL193194.1 samtools variation 420971 420971 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193194.1 samtools variation 432361 432361 . . . alleles " T G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193194.1 samtools variation 485221 485221 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193194.1 samtools variation 487402 487402 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193194.1 samtools variation 488881 488881 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193194.1 samtools variation 488973 488973 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL193194.1 samtools variation 489671 489671 . . . alleles " C T"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; known ; N/A GL193194.1 samtools variation 489741 489741 . . . alleles " C T"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; known ; N/A GL193194.1 samtools variation 490621 490621 . . . alleles " C T"; frequencies " 0.32 0.68"; depth 25 ; known ; N/A GL193194.1 samtools variation 490648 490648 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL193194.1 samtools variation 491121 491121 . . . alleles " C T"; frequencies " 0.21875 0.78125"; depth 32 ; known ; N/A GL193194.1 samtools variation 491243 491243 . . . alleles " T C"; frequencies " 0.433333333333333 0.566666666666667"; depth 60 ; known ; N/A GL193194.1 samtools variation 491272 491272 . . . alleles " G T"; frequencies " 0.547169811320755 0.452830188679245"; depth 53 ; known ; N/A GL193194.1 samtools variation 521222 521222 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193194.1 samtools variation 530419 530419 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193194.1 samtools variation 534108 534108 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL193194.1 samtools variation 706123 706123 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193194.1 samtools variation 710091 710091 . . . alleles " G C"; frequencies " 0.473684210526316 0.526315789473684"; depth 57 ; known ; N/A GL193194.1 samtools variation 710290 710290 . . . alleles " T C"; frequencies " 0.60431654676259 0.39568345323741"; depth 139 ; known ; N/A GL193194.1 samtools variation 711030 711030 . . . alleles " T A"; frequencies " 0.48936170212766 0.51063829787234"; depth 47 ; known ; N/A GL193194.1 samtools variation 711925 711925 . . . alleles " C T"; frequencies " 0.283333333333333 0.716666666666667"; depth 60 ; known ; N/A GL193194.1 samtools variation 712550 712550 . . . alleles " A T"; frequencies " 0.46 0.54"; depth 50 ; known ; N/A GL193194.1 samtools variation 712661 712661 . . . alleles " C A"; frequencies " 0.46551724137931 0.53448275862069"; depth 58 ; known ; N/A GL193194.1 samtools variation 713286 713286 . . . alleles " A G"; frequencies " 0.5 0.476190476190476"; depth 42 ; known ; non-synonymous GL193195.1 samtools variation 140831 140831 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 46 ; unknown ; N/A GL193195.1 samtools variation 149903 149903 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193195.1 samtools variation 212842 212842 . . . alleles " C T"; frequencies " 0.525 0.475"; depth 40 ; unknown ; synonymous GL193195.1 samtools variation 671418 671418 . . . alleles " G C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193195.1 samtools variation 734617 734617 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 60 ; unknown ; synonymous GL193195.1 samtools variation 802998 802998 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193195.1 samtools variation 803303 803303 . . . alleles " T C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL193195.1 samtools variation 804240 804240 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193196.1 samtools variation 165842 165842 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193196.1 samtools variation 166108 166108 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193196.1 samtools variation 166397 166397 . . . alleles " C A"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL193196.1 samtools variation 166904 166904 . . . alleles " G C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193196.1 samtools variation 458847 458847 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL193196.1 samtools variation 458937 458937 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193196.1 samtools variation 458956 458956 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193196.1 samtools variation 466225 466225 . . . alleles " G A"; frequencies " 0.346938775510204 0.653061224489796"; depth 98 ; known ; N/A GL193197.1 samtools variation 614586 614586 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; synonymous GL193197.1 samtools variation 710970 710970 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; non-synonymous GL193198.1 samtools variation 310076 310076 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL193198.1 samtools variation 559267 559267 . . . alleles " G A"; frequencies " 0.672862453531598 0.327137546468401"; depth 538 ; unknown ; N/A GL193198.1 samtools variation 572157 572157 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193198.1 samtools variation 581657 581657 . . . alleles " G A"; frequencies " 0.631067961165049 0.368932038834951"; depth 309 ; unknown ; N/A GL193202.1 samtools variation 30616 30616 . . . alleles " T G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; synonymous GL193202.1 samtools variation 30740 30740 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193202.1 samtools variation 30809 30809 . . . alleles " A G"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL193202.1 samtools variation 30851 30851 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL193202.1 samtools variation 76986 76986 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL193202.1 samtools variation 84215 84215 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193202.1 samtools variation 86242 86242 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193202.1 samtools variation 91139 91139 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193202.1 samtools variation 101908 101908 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193202.1 samtools variation 101909 101909 . . . alleles " G T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193202.1 samtools variation 111977 111977 . . . alleles " T C"; frequencies " 0.784013605442177 0.215986394557823"; depth 588 ; unknown ; N/A GL193202.1 samtools variation 120856 120856 . . . alleles " C T"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL193202.1 samtools variation 121311 121311 . . . alleles " A C"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL193202.1 samtools variation 121534 121534 . . . alleles " C G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL193202.1 samtools variation 122892 122892 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL193202.1 samtools variation 141266 141266 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193202.1 samtools variation 141576 141576 . . . alleles " G A"; frequencies " 0.45 0.55"; depth 40 ; unknown ; non-synonymous GL193202.1 samtools variation 205517 205517 . . . alleles " G A"; frequencies " 0.605434782608696 0.394565217391304"; depth 920 ; unknown ; synonymous GL193202.1 samtools variation 253483 253483 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 44 ; unknown ; N/A GL193202.1 samtools variation 253519 253519 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; N/A GL193202.1 samtools variation 253605 253605 . . . alleles " T A"; frequencies " 0.629032258064516 0.370967741935484"; depth 62 ; unknown ; N/A GL193202.1 samtools variation 255976 255976 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193202.1 samtools variation 256403 256403 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193202.1 samtools variation 256414 256414 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193202.1 samtools variation 424711 424711 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL193202.1 samtools variation 424923 424923 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; synonymous GL193202.1 samtools variation 463365 463365 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193202.1 samtools variation 464126 464126 . . . alleles " A T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193202.1 samtools variation 484992 484992 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193202.1 samtools variation 690644 690644 . . . alleles " G C"; frequencies " 0.681818181818182 0.318181818181818"; depth 88 ; unknown ; N/A GL193202.1 samtools variation 690731 690731 . . . alleles " C T"; frequencies " 0.478991596638655 0.521008403361345"; depth 119 ; unknown ; N/A GL193202.1 samtools variation 690921 690921 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 60 ; unknown ; N/A GL193202.1 samtools variation 691013 691013 . . . alleles " C T"; frequencies " 0.753623188405797 0.246376811594203"; depth 69 ; unknown ; N/A GL193202.1 samtools variation 695463 695463 . . . alleles " G A"; frequencies " 0.714776632302406 0.285223367697594"; depth 291 ; unknown ; synonymous GL193202.1 samtools variation 718364 718364 . . . alleles " G C"; frequencies " 0.626506024096386 0.373493975903614"; depth 83 ; unknown ; N/A GL193202.1 samtools variation 718429 718429 . . . alleles " C T"; frequencies " 0.793388429752066 0.206611570247934"; depth 121 ; unknown ; N/A GL193202.1 samtools variation 745115 745115 . . . alleles " A G"; frequencies " 0.324175824175824 0.675824175824176"; depth 182 ; unknown ; N/A GL193202.1 samtools variation 745320 745320 . . . alleles " C T"; frequencies " 0.798192771084337 0.201807228915663"; depth 332 ; unknown ; N/A GL193202.1 samtools variation 745390 745390 . . . alleles " A G"; frequencies " 0.758771929824561 0.241228070175439"; depth 228 ; unknown ; N/A GL193202.1 samtools variation 750360 750360 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 225 ; unknown ; N/A GL193202.1 samtools variation 751630 751630 . . . alleles " G A"; frequencies " 0.508771929824561 0.491228070175439"; depth 57 ; unknown ; N/A GL193202.1 samtools variation 757148 757148 . . . alleles " G A"; frequencies " 0.772151898734177 0.227848101265823"; depth 79 ; unknown ; N/A GL193202.1 samtools variation 758835 758835 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193202.1 samtools variation 759115 759115 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193203.1 samtools variation 55384 55384 . . . alleles " A G"; frequencies " 0.705426356589147 0.294573643410853"; depth 129 ; unknown ; N/A GL193203.1 samtools variation 293054 293054 . . . alleles " A T"; frequencies " 0.635658914728682 0.364341085271318"; depth 129 ; known ; non-synonymous GL193203.1 samtools variation 298942 298942 . . . alleles " G A"; frequencies " 0.397163120567376 0.602836879432624"; depth 141 ; known ; synonymous GL193203.1 samtools variation 387470 387470 . . . alleles " G C"; frequencies " 0.695121951219512 0.304878048780488"; depth 82 ; unknown ; N/A GL193203.1 samtools variation 391713 391713 . . . alleles " C T"; frequencies " 0.64 0.36"; depth 25 ; unknown ; synonymous GL193203.1 samtools variation 392069 392069 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193203.1 samtools variation 532114 532114 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; synonymous GL193203.1 samtools variation 672474 672474 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; synonymous GL193203.1 samtools variation 748255 748255 . . . alleles " A T"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL193203.1 samtools variation 748319 748319 . . . alleles " T C"; frequencies " 0.775862068965517 0.224137931034483"; depth 58 ; known ; N/A GL193203.1 samtools variation 748603 748603 . . . alleles " T G"; frequencies " 0.571428571428571 0.428571428571429"; depth 56 ; known ; N/A GL193203.1 samtools variation 772525 772525 . . . alleles " A G"; frequencies " 0.26984126984127 0.73015873015873"; depth 63 ; unknown ; N/A GL193203.1 samtools variation 869668 869668 . . . alleles " A C"; frequencies " 0.78125 0.21875"; depth 64 ; known ; non-synonymous GL193204.1 samtools variation 10699 10699 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; synonymous GL193204.1 samtools variation 11173 11173 . . . alleles " G A"; frequencies " 0.465116279069767 0.534883720930233"; depth 43 ; known ; synonymous GL193204.1 samtools variation 113812 113812 . . . alleles " C T"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; known ; N/A GL193204.1 samtools variation 115458 115458 . . . alleles " G A"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; known ; non-synonymous GL193204.1 samtools variation 127533 127533 . . . alleles " C T"; frequencies " 0.246679316888046 0.753320683111954"; depth 527 ; known ; N/A GL193204.1 samtools variation 127873 127873 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 217 ; known ; N/A GL193204.1 samtools variation 128470 128470 . . . alleles " G C"; frequencies " 0.788501026694045 0.211498973305955"; depth 487 ; known ; N/A GL193204.1 samtools variation 128617 128617 . . . alleles " G C"; frequencies " 0.743833017077799 0.256166982922201"; depth 527 ; known ; non-synonymous GL193204.1 samtools variation 130004 130004 . . . alleles " G C"; frequencies " 0.753846153846154 0.246153846153846"; depth 195 ; unknown ; N/A GL193204.1 samtools variation 148884 148884 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL193204.1 samtools variation 152648 152648 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193204.1 samtools variation 155542 155542 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193204.1 samtools variation 156401 156401 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL193204.1 samtools variation 157986 157986 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193204.1 samtools variation 160229 160229 . . . alleles " T A"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193204.1 samtools variation 166244 166244 . . . alleles " T C"; frequencies " 0.268041237113402 0.731958762886598"; depth 97 ; unknown ; N/A GL193204.1 samtools variation 170129 170129 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 54 ; unknown ; N/A GL193204.1 samtools variation 174085 174085 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193204.1 samtools variation 178172 178172 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 32 ; known ; N/A GL193204.1 samtools variation 178775 178775 . . . alleles " T C"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL193204.1 samtools variation 182325 182325 . . . alleles " T C"; frequencies " 0.689655172413793 0.310344827586207"; depth 58 ; known ; synonymous GL193204.1 samtools variation 188641 188641 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193204.1 samtools variation 188668 188668 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL193204.1 samtools variation 222534 222534 . . . alleles " G A"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; known ; N/A GL193204.1 samtools variation 222658 222658 . . . alleles " A T"; frequencies " 0.612903225806452 0.387096774193548"; depth 62 ; unknown ; N/A GL193204.1 samtools variation 222659 222659 . . . alleles " C A"; frequencies " 0.612903225806452 0.387096774193548"; depth 62 ; unknown ; N/A GL193204.1 samtools variation 240401 240401 . . . alleles " C G"; frequencies " 0.78125 0.21875"; depth 32 ; known ; non-synonymous GL193204.1 samtools variation 243178 243178 . . . alleles " C A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; non-synonymous GL193204.1 samtools variation 258767 258767 . . . alleles " C T"; frequencies " 0.776119402985075 0.223880597014925"; depth 67 ; unknown ; N/A GL193204.1 samtools variation 258770 258770 . . . alleles " C G"; frequencies " 0.779220779220779 0.220779220779221"; depth 77 ; unknown ; N/A GL193204.1 samtools variation 323309 323309 . . . alleles " G A"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL193204.1 samtools variation 323561 323561 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL193204.1 samtools variation 324149 324149 . . . alleles " C A"; frequencies " 0.414634146341463 0.585365853658537"; depth 82 ; known ; N/A GL193204.1 samtools variation 325217 325217 . . . alleles " G A"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; unknown ; N/A GL193204.1 samtools variation 326323 326323 . . . alleles " A G"; frequencies " 0.793650793650794 0.206349206349206"; depth 63 ; unknown ; N/A GL193204.1 samtools variation 327465 327465 . . . alleles " G A"; frequencies " 0.635036496350365 0.364963503649635"; depth 137 ; unknown ; N/A GL193204.1 samtools variation 327799 327799 . . . alleles " T C"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; known ; N/A GL193204.1 samtools variation 334968 334968 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193204.1 samtools variation 344213 344213 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 96 ; unknown ; synonymous GL193204.1 samtools variation 344285 344285 . . . alleles " C A"; frequencies " 0.442857142857143 0.557142857142857"; depth 70 ; known ; synonymous GL193204.1 samtools variation 344459 344459 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 36 ; unknown ; synonymous GL193204.1 samtools variation 344741 344741 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 48 ; unknown ; synonymous GL193204.1 samtools variation 344813 344813 . . . alleles " T C"; frequencies " 0.450980392156863 0.549019607843137"; depth 51 ; known ; synonymous GL193204.1 samtools variation 427082 427082 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; known ; synonymous GL193204.1 samtools variation 433298 433298 . . . alleles " G C"; frequencies " 0.701298701298701 0.298701298701299"; depth 154 ; known ; non-synonymous GL193204.1 samtools variation 483341 483341 . . . alleles " C G"; frequencies " 0.763948497854077 0.236051502145923"; depth 233 ; unknown ; N/A GL193204.1 samtools variation 485164 485164 . . . alleles " C G"; frequencies " 0.60655737704918 0.39344262295082"; depth 61 ; unknown ; non-synonymous GL193204.1 samtools variation 485168 485168 . . . alleles " G C"; frequencies " 0.516129032258065 0.483870967741935"; depth 62 ; unknown ; synonymous GL193204.1 samtools variation 486087 486087 . . . alleles " G A"; frequencies " 0.741258741258741 0.258741258741259"; depth 286 ; known ; synonymous GL193204.1 samtools variation 558119 558119 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193204.1 samtools variation 582809 582809 . . . alleles " C T"; frequencies " 0.209150326797386 0.790849673202614"; depth 153 ; unknown ; synonymous GL193204.1 samtools variation 582945 582945 . . . alleles " C T"; frequencies " 0.783088235294118 0.216911764705882"; depth 272 ; unknown ; non-synonymous GL193204.1 samtools variation 588947 588947 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193204.1 samtools variation 678593 678593 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; N/A GL193204.1 samtools variation 679194 679194 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193204.1 samtools variation 680264 680264 . . . alleles " C A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193204.1 samtools variation 680462 680462 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 33 ; unknown ; N/A GL193204.1 samtools variation 681086 681086 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL193206.1 samtools variation 459058 459058 . . . alleles " G A"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; N/A GL193206.1 samtools variation 474469 474469 . . . alleles " T C"; frequencies " 0.760683760683761 0.239316239316239"; depth 117 ; unknown ; non-synonymous GL193206.1 samtools variation 486164 486164 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193206.1 samtools variation 487039 487039 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193206.1 samtools variation 487067 487067 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193206.1 samtools variation 497244 497244 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193206.1 samtools variation 497266 497266 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193206.1 samtools variation 498058 498058 . . . alleles " C T"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL193206.1 samtools variation 545554 545554 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193206.1 samtools variation 546222 546222 . . . alleles " T C"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; known ; N/A GL193206.1 samtools variation 547163 547163 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL193206.1 samtools variation 612702 612702 . . . alleles " G C"; frequencies " 0.674157303370786 0.325842696629214"; depth 89 ; unknown ; N/A GL193206.1 samtools variation 689606 689606 . . . alleles " T C"; frequencies " 0.241379310344828 0.758620689655172"; depth 29 ; known ; non-synonymous GL193206.1 samtools variation 728507 728507 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; synonymous GL193206.1 samtools variation 763211 763211 . . . alleles " C T"; frequencies " 0.74025974025974 0.25974025974026"; depth 77 ; known ; synonymous GL193206.1 samtools variation 767176 767176 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; synonymous GL193206.1 samtools variation 775137 775137 . . . alleles " A G"; frequencies " 0.53448275862069 0.46551724137931"; depth 58 ; known ; synonymous GL193206.1 samtools variation 776488 776488 . . . alleles " G A"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; known ; synonymous GL193206.1 samtools variation 790328 790328 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193206.1 samtools variation 795243 795243 . . . alleles " T C"; frequencies " 0.568421052631579 0.431578947368421"; depth 95 ; unknown ; non-synonymous GL193206.1 samtools variation 848372 848372 . . . alleles " G A"; frequencies " 0.482142857142857 0.517857142857143"; depth 112 ; known ; synonymous GL193206.1 samtools variation 856275 856275 . . . alleles " C G"; frequencies " 0.734042553191489 0.265957446808511"; depth 94 ; unknown ; non-synonymous GL193206.1 samtools variation 856343 856343 . . . alleles " A G"; frequencies " 0.725806451612903 0.274193548387097"; depth 62 ; unknown ; non-synonymous GL193206.1 samtools variation 856437 856437 . . . alleles " G C"; frequencies " 0.689189189189189 0.310810810810811"; depth 74 ; unknown ; non-synonymous GL193207.1 samtools variation 73298 73298 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193207.1 samtools variation 180805 180805 . . . alleles " T A"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL193207.1 samtools variation 181283 181283 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193207.1 samtools variation 181284 181284 . . . alleles " T A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193207.1 samtools variation 205574 205574 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 54 ; unknown ; N/A GL193207.1 samtools variation 209962 209962 . . . alleles " G C"; frequencies " 0.410958904109589 0.589041095890411"; depth 73 ; unknown ; N/A GL193207.1 samtools variation 215266 215266 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 72 ; unknown ; N/A GL193207.1 samtools variation 215703 215703 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193207.1 samtools variation 216457 216457 . . . alleles " C A"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL193207.1 samtools variation 217649 217649 . . . alleles " C T"; frequencies " 0.566225165562914 0.433774834437086"; depth 302 ; unknown ; N/A GL193207.1 samtools variation 225954 225954 . . . alleles " G A"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL193207.1 samtools variation 370737 370737 . . . alleles " A G"; frequencies " 0.21011673151751 0.78988326848249"; depth 257 ; known ; N/A GL193207.1 samtools variation 371775 371775 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 545 ; unknown ; N/A GL193207.1 samtools variation 372541 372541 . . . alleles " A G"; frequencies " 0.724590163934426 0.275409836065574"; depth 305 ; known ; N/A GL193207.1 samtools variation 372591 372591 . . . alleles " G A"; frequencies " 0.621875 0.378125"; depth 320 ; unknown ; N/A GL193207.1 samtools variation 374315 374315 . . . alleles " T A"; frequencies " 0.727272727272727 0.272727272727273"; depth 55 ; unknown ; N/A GL193207.1 samtools variation 374429 374429 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL193207.1 samtools variation 374518 374518 . . . alleles " A G"; frequencies " 0.720588235294118 0.279411764705882"; depth 68 ; unknown ; N/A GL193207.1 samtools variation 374525 374525 . . . alleles " C T"; frequencies " 0.794117647058823 0.205882352941176"; depth 68 ; unknown ; N/A GL193207.1 samtools variation 374597 374597 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 85 ; unknown ; N/A GL193207.1 samtools variation 375386 375386 . . . alleles " T C"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL193207.1 samtools variation 375990 375990 . . . alleles " C A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193207.1 samtools variation 376276 376276 . . . alleles " C T"; frequencies " 0.686746987951807 0.313253012048193"; depth 83 ; unknown ; N/A GL193207.1 samtools variation 376433 376433 . . . alleles " G A"; frequencies " 0.703125 0.296875"; depth 64 ; unknown ; N/A GL193207.1 samtools variation 377764 377764 . . . alleles " A C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193207.1 samtools variation 377822 377822 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193207.1 samtools variation 377930 377930 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193207.1 samtools variation 377938 377938 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193207.1 samtools variation 379189 379189 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 40 ; unknown ; N/A GL193207.1 samtools variation 380580 380580 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193207.1 samtools variation 381033 381033 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193207.1 samtools variation 382124 382124 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193207.1 samtools variation 382168 382168 . . . alleles " C G"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; unknown ; N/A GL193207.1 samtools variation 398131 398131 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193207.1 samtools variation 398155 398155 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193208.1 samtools variation 126112 126112 . . . alleles " G A"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL193208.1 samtools variation 173486 173486 . . . alleles " T C"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; synonymous GL193208.1 samtools variation 173677 173677 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; synonymous GL193208.1 samtools variation 174679 174679 . . . alleles " A G"; frequencies " 0.745762711864407 0.254237288135593"; depth 59 ; unknown ; synonymous GL193208.1 samtools variation 175212 175212 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; synonymous GL193208.1 samtools variation 176104 176104 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; non-synonymous GL193208.1 samtools variation 179086 179086 . . . alleles " G A"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; known ; non-synonymous GL193208.1 samtools variation 183875 183875 . . . alleles " C T"; frequencies " 0.798561151079137 0.201438848920863"; depth 139 ; unknown ; synonymous GL193208.1 samtools variation 306656 306656 . . . alleles " T A"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193208.1 samtools variation 306685 306685 . . . alleles " G A"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL193208.1 samtools variation 307681 307681 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193208.1 samtools variation 312305 312305 . . . alleles " C T"; frequencies " 0.626506024096386 0.373493975903614"; depth 83 ; unknown ; N/A GL193208.1 samtools variation 312621 312621 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL193208.1 samtools variation 336200 336200 . . . alleles " G A"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; synonymous GL193208.1 samtools variation 343432 343432 . . . alleles " A G"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; synonymous GL193208.1 samtools variation 547375 547375 . . . alleles " A G"; frequencies " 0.786666666666667 0.213333333333333"; depth 75 ; unknown ; synonymous GL193208.1 samtools variation 558919 558919 . . . alleles " G A"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL193209.1 samtools variation 21543 21543 . . . alleles " C T"; frequencies " 0.471698113207547 0.528301886792453"; depth 53 ; unknown ; N/A GL193209.1 samtools variation 25718 25718 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL193209.1 samtools variation 25947 25947 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 28 ; known ; N/A GL193209.1 samtools variation 25979 25979 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193209.1 samtools variation 26278 26278 . . . alleles " G A"; frequencies " 0.52962962962963 0.47037037037037"; depth 270 ; unknown ; N/A GL193209.1 samtools variation 27203 27203 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 76 ; unknown ; N/A GL193209.1 samtools variation 32219 32219 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193209.1 samtools variation 43086 43086 . . . alleles " A T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193209.1 samtools variation 45458 45458 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL193209.1 samtools variation 50761 50761 . . . alleles " G T"; frequencies " 0.675324675324675 0.324675324675325"; depth 77 ; known ; N/A GL193209.1 samtools variation 50843 50843 . . . alleles " C A"; frequencies " 0.341176470588235 0.658823529411765"; depth 85 ; unknown ; N/A GL193209.1 samtools variation 50880 50880 . . . alleles " G T"; frequencies " 0.396039603960396 0.603960396039604"; depth 101 ; unknown ; N/A GL193209.1 samtools variation 51033 51033 . . . alleles " C A"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL193209.1 samtools variation 95195 95195 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193209.1 samtools variation 98535 98535 . . . alleles " A G"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; unknown ; N/A GL193209.1 samtools variation 98601 98601 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 42 ; unknown ; N/A GL193209.1 samtools variation 98697 98697 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL193209.1 samtools variation 99228 99228 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL193209.1 samtools variation 99355 99355 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193209.1 samtools variation 99836 99836 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193209.1 samtools variation 99880 99880 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193209.1 samtools variation 101554 101554 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193209.1 samtools variation 101555 101555 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193209.1 samtools variation 102086 102086 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193209.1 samtools variation 102293 102293 . . . alleles " C G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL193209.1 samtools variation 102295 102295 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL193209.1 samtools variation 107818 107818 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193209.1 samtools variation 117308 117308 . . . alleles " T A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193209.1 samtools variation 122144 122144 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193209.1 samtools variation 122697 122697 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193209.1 samtools variation 123178 123178 . . . alleles " T C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL193209.1 samtools variation 127509 127509 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193209.1 samtools variation 128756 128756 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193209.1 samtools variation 128757 128757 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193209.1 samtools variation 133833 133833 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193209.1 samtools variation 134871 134871 . . . alleles " G A"; frequencies " 0.496551724137931 0.503448275862069"; depth 145 ; known ; non-synonymous GL193209.1 samtools variation 311919 311919 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193209.1 samtools variation 312052 312052 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193209.1 samtools variation 312054 312054 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193209.1 samtools variation 327895 327895 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193209.1 samtools variation 328682 328682 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL193209.1 samtools variation 330531 330531 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193209.1 samtools variation 362735 362735 . . . alleles " A C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193209.1 samtools variation 365008 365008 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193209.1 samtools variation 367056 367056 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193209.1 samtools variation 367517 367517 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193209.1 samtools variation 368194 368194 . . . alleles " G A"; frequencies " 0.675 0.325"; depth 80 ; unknown ; synonymous GL193209.1 samtools variation 368239 368239 . . . alleles " T C"; frequencies " 0.644736842105263 0.355263157894737"; depth 76 ; unknown ; synonymous GL193209.1 samtools variation 368687 368687 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193209.1 samtools variation 370823 370823 . . . alleles " G A"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL193209.1 samtools variation 370950 370950 . . . alleles " G T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193209.1 samtools variation 374550 374550 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193209.1 samtools variation 377957 377957 . . . alleles " G C"; frequencies " 0.409448818897638 0.590551181102362"; depth 127 ; unknown ; N/A GL193209.1 samtools variation 378213 378213 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 45 ; unknown ; N/A GL193210.1 samtools variation 704305 704305 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193210.1 samtools variation 724612 724612 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; known ; N/A GL193212.1 samtools variation 333278 333278 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; synonymous GL193213.1 samtools variation 759234 759234 . . . alleles " A G"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL193213.1 samtools variation 762086 762086 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193214.1 samtools variation 259260 259260 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193214.1 samtools variation 287206 287206 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL193214.1 samtools variation 289758 289758 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193214.1 samtools variation 293248 293248 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193214.1 samtools variation 310071 310071 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193214.1 samtools variation 337539 337539 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193214.1 samtools variation 360778 360778 . . . alleles " G A"; frequencies " 0.447058823529412 0.552941176470588"; depth 85 ; unknown ; N/A GL193214.1 samtools variation 361664 361664 . . . alleles " T C"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL193214.1 samtools variation 362215 362215 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL193214.1 samtools variation 392823 392823 . . . alleles " C T"; frequencies " 0.374045801526718 0.625954198473282"; depth 131 ; unknown ; N/A GL193214.1 samtools variation 394028 394028 . . . alleles " G A"; frequencies " 0.365853658536585 0.634146341463415"; depth 41 ; unknown ; synonymous GL193214.1 samtools variation 402287 402287 . . . alleles " G C"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL193214.1 samtools variation 410419 410419 . . . alleles " G T"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL193214.1 samtools variation 416243 416243 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL193214.1 samtools variation 422736 422736 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193214.1 samtools variation 423382 423382 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 38 ; unknown ; N/A GL193214.1 samtools variation 436676 436676 . . . alleles " G T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193214.1 samtools variation 464543 464543 . . . alleles " A G"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; known ; N/A GL193214.1 samtools variation 661545 661545 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 66 ; known ; synonymous GL193214.1 samtools variation 663699 663699 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 57 ; known ; non-synonymous GL193214.1 samtools variation 670213 670213 . . . alleles " A G"; frequencies " 0.69620253164557 0.30379746835443"; depth 158 ; known ; N/A GL193214.1 samtools variation 688804 688804 . . . alleles " G A"; frequencies " 0.277777777777778 0.722222222222222"; depth 126 ; known ; synonymous GL193214.1 samtools variation 696534 696534 . . . alleles " A C"; frequencies " 0.65625 0.34375"; depth 192 ; known ; N/A GL193214.1 samtools variation 735018 735018 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193214.1 samtools variation 735291 735291 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL193214.1 samtools variation 736029 736029 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193214.1 samtools variation 736030 736030 . . . alleles " T G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193214.1 samtools variation 736047 736047 . . . alleles " C A"; frequencies " 0.44 0.56"; depth 25 ; known ; N/A GL193214.1 samtools variation 738798 738798 . . . alleles " A G"; frequencies " 0.699507389162562 0.300492610837438"; depth 203 ; known ; N/A GL193214.1 samtools variation 740728 740728 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; synonymous GL193214.1 samtools variation 752647 752647 . . . alleles " G C"; frequencies " 0.343434343434343 0.656565656565657"; depth 99 ; known ; synonymous GL193214.1 samtools variation 759334 759334 . . . alleles " G C"; frequencies " 0.793103448275862 0.206896551724138"; depth 58 ; unknown ; synonymous GL193214.1 samtools variation 789390 789390 . . . alleles " T C"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL193214.1 samtools variation 797185 797185 . . . alleles " A G"; frequencies " 0.319148936170213 0.680851063829787"; depth 47 ; unknown ; N/A GL193214.1 samtools variation 807505 807505 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 28 ; known ; N/A GL193214.1 samtools variation 813702 813702 . . . alleles " T A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193215.1 samtools variation 112996 112996 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL193215.1 samtools variation 113187 113187 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL193215.1 samtools variation 114132 114132 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 30 ; known ; N/A GL193215.1 samtools variation 114147 114147 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; N/A GL193215.1 samtools variation 114298 114298 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL193215.1 samtools variation 114354 114354 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193215.1 samtools variation 116053 116053 . . . alleles " A G"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; unknown ; N/A GL193215.1 samtools variation 130774 130774 . . . alleles " G C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL193215.1 samtools variation 131580 131580 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL193215.1 samtools variation 173324 173324 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193215.1 samtools variation 264894 264894 . . . alleles " A G"; frequencies " 0.262857142857143 0.737142857142857"; depth 175 ; known ; N/A GL193215.1 samtools variation 267157 267157 . . . alleles " T A"; frequencies " 0.672131147540984 0.327868852459016"; depth 61 ; unknown ; N/A GL193215.1 samtools variation 305941 305941 . . . alleles " A G"; frequencies " 0.774509803921569 0.225490196078431"; depth 102 ; known ; N/A GL193215.1 samtools variation 305989 305989 . . . alleles " C T"; frequencies " 0.458333333333333 0.541666666666667"; depth 72 ; known ; N/A GL193215.1 samtools variation 306005 306005 . . . alleles " T G"; frequencies " 0.416666666666667 0.583333333333333"; depth 96 ; known ; N/A GL193215.1 samtools variation 306454 306454 . . . alleles " G C"; frequencies " 0.784615384615385 0.215384615384615"; depth 195 ; known ; N/A GL193215.1 samtools variation 306543 306543 . . . alleles " T C"; frequencies " 0.222826086956522 0.777173913043478"; depth 184 ; known ; N/A GL193215.1 samtools variation 307127 307127 . . . alleles " G C"; frequencies " 0.777777777777778 0.222222222222222"; depth 63 ; known ; N/A GL193215.1 samtools variation 307346 307346 . . . alleles " A C"; frequencies " 0.246808510638298 0.753191489361702"; depth 470 ; known ; non-synonymous GL193215.1 samtools variation 307705 307705 . . . alleles " G A"; frequencies " 0.56953642384106 0.43046357615894"; depth 151 ; unknown ; N/A GL193215.1 samtools variation 307881 307881 . . . alleles " T C"; frequencies " 0.732558139534884 0.267441860465116"; depth 86 ; known ; N/A GL193215.1 samtools variation 317241 317241 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; known ; N/A GL193215.1 samtools variation 318018 318018 . . . alleles " G A"; frequencies " 0.61139896373057 0.38860103626943"; depth 193 ; unknown ; synonymous GL193215.1 samtools variation 319168 319168 . . . alleles " A G"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; N/A GL193215.1 samtools variation 319695 319695 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL193215.1 samtools variation 321479 321479 . . . alleles " A C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193215.1 samtools variation 349790 349790 . . . alleles " T C"; frequencies " 0.215277777777778 0.784722222222222"; depth 144 ; unknown ; N/A GL193215.1 samtools variation 444114 444114 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; non-synonymous GL193215.1 samtools variation 486535 486535 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193215.1 samtools variation 491803 491803 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193215.1 samtools variation 498072 498072 . . . alleles " C G"; frequencies " 0.301775147928994 0.698224852071006"; depth 169 ; unknown ; non-synonymous GL193215.1 samtools variation 503122 503122 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 254 ; unknown ; synonymous GL193215.1 samtools variation 530683 530683 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; synonymous GL193215.1 samtools variation 539379 539379 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193215.1 samtools variation 544409 544409 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL193215.1 samtools variation 553933 553933 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193215.1 samtools variation 561965 561965 . . . alleles " G A"; frequencies " 0.420512820512821 0.57948717948718"; depth 195 ; known ; N/A GL193215.1 samtools variation 579820 579820 . . . alleles " C T"; frequencies " 0.794183445190157 0.205816554809843"; depth 447 ; unknown ; non-synonymous GL193215.1 samtools variation 583593 583593 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 156 ; unknown ; N/A GL193215.1 samtools variation 584036 584036 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 65 ; unknown ; N/A GL193215.1 samtools variation 584614 584614 . . . alleles " C G"; frequencies " 0.796610169491525 0.203389830508475"; depth 59 ; unknown ; N/A GL193215.1 samtools variation 585385 585385 . . . alleles " A G"; frequencies " 0.671641791044776 0.328358208955224"; depth 134 ; unknown ; N/A GL193215.1 samtools variation 604932 604932 . . . alleles " G C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL193215.1 samtools variation 621221 621221 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL193215.1 samtools variation 625634 625634 . . . alleles " C T"; frequencies " 0.32 0.68"; depth 25 ; known ; N/A GL193215.1 samtools variation 625707 625707 . . . alleles " C T"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; known ; N/A GL193215.1 samtools variation 626097 626097 . . . alleles " C A"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; N/A GL193215.1 samtools variation 626545 626545 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL193215.1 samtools variation 627015 627015 . . . alleles " A G"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; known ; N/A GL193215.1 samtools variation 627709 627709 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 57 ; unknown ; N/A GL193215.1 samtools variation 721456 721456 . . . alleles " C T"; frequencies " 0.236842105263158 0.763157894736842"; depth 114 ; unknown ; N/A GL193215.1 samtools variation 803489 803489 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193216.1 samtools variation 77987 77987 . . . alleles " A G"; frequencies " 0.688888888888889 0.311111111111111"; depth 45 ; unknown ; synonymous GL193216.1 samtools variation 78527 78527 . . . alleles " A G"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; synonymous GL193216.1 samtools variation 92989 92989 . . . alleles " G T"; frequencies " 0.549618320610687 0.450381679389313"; depth 131 ; unknown ; N/A GL193216.1 samtools variation 94746 94746 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL193216.1 samtools variation 94786 94786 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193216.1 samtools variation 95343 95343 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL193216.1 samtools variation 95512 95512 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193216.1 samtools variation 95641 95641 . . . alleles " C T"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; known ; N/A GL193216.1 samtools variation 95788 95788 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; known ; N/A GL193216.1 samtools variation 193484 193484 . . . alleles " T C"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL193216.1 samtools variation 219382 219382 . . . alleles " T C"; frequencies " 0.27027027027027 0.72972972972973"; depth 111 ; unknown ; non-synonymous GL193216.1 samtools variation 219392 219392 . . . alleles " T C"; frequencies " 0.612068965517241 0.387931034482759"; depth 116 ; unknown ; synonymous GL193216.1 samtools variation 464447 464447 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; known ; synonymous GL193216.1 samtools variation 465616 465616 . . . alleles " C T"; frequencies " 0.642384105960265 0.357615894039735"; depth 151 ; unknown ; non-synonymous GL193216.1 samtools variation 494701 494701 . . . alleles " C A"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; known ; non-synonymous GL193216.1 samtools variation 499688 499688 . . . alleles " G A"; frequencies " 0.689189189189189 0.310810810810811"; depth 74 ; unknown ; non-synonymous GL193216.1 samtools variation 508742 508742 . . . alleles " C G"; frequencies " 0.73972602739726 0.26027397260274"; depth 219 ; unknown ; N/A GL193217.1 samtools variation 117510 117510 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL193217.1 samtools variation 117517 117517 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL193217.1 samtools variation 119632 119632 . . . alleles " T A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193217.1 samtools variation 121412 121412 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 80 ; unknown ; N/A GL193217.1 samtools variation 123041 123041 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL193217.1 samtools variation 126835 126835 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193217.1 samtools variation 127549 127549 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 40 ; unknown ; N/A GL193217.1 samtools variation 127651 127651 . . . alleles " G A"; frequencies " 0.533333333333333 0.444444444444444"; depth 45 ; unknown ; N/A GL193217.1 samtools variation 128155 128155 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193217.1 samtools variation 128976 128976 . . . alleles " A G"; frequencies " 0.527777777777778 0.472222222222222"; depth 72 ; unknown ; N/A GL193217.1 samtools variation 129072 129072 . . . alleles " C G"; frequencies " 0.543478260869565 0.456521739130435"; depth 92 ; unknown ; N/A GL193217.1 samtools variation 129133 129133 . . . alleles " A G"; frequencies " 0.342105263157895 0.657894736842105"; depth 38 ; unknown ; N/A GL193217.1 samtools variation 129178 129178 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 32 ; unknown ; N/A GL193217.1 samtools variation 129738 129738 . . . alleles " G A"; frequencies " 0.492307692307692 0.507692307692308"; depth 65 ; unknown ; N/A GL193217.1 samtools variation 129826 129826 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL193217.1 samtools variation 129999 129999 . . . alleles " A G"; frequencies " 0.40625 0.59375"; depth 32 ; unknown ; N/A GL193217.1 samtools variation 130099 130099 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193217.1 samtools variation 130340 130340 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193217.1 samtools variation 130421 130421 . . . alleles " A G"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL193217.1 samtools variation 130483 130483 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL193217.1 samtools variation 131314 131314 . . . alleles " T C"; frequencies " 0.508771929824561 0.491228070175439"; depth 57 ; unknown ; N/A GL193217.1 samtools variation 131354 131354 . . . alleles " G A"; frequencies " 0.532258064516129 0.467741935483871"; depth 62 ; unknown ; N/A GL193217.1 samtools variation 132449 132449 . . . alleles " G A"; frequencies " 0.524390243902439 0.475609756097561"; depth 82 ; unknown ; N/A GL193217.1 samtools variation 132580 132580 . . . alleles " G C"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL193217.1 samtools variation 132704 132704 . . . alleles " G A"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL193217.1 samtools variation 132962 132962 . . . alleles " A G"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL193217.1 samtools variation 133065 133065 . . . alleles " C T"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL193217.1 samtools variation 133348 133348 . . . alleles " A G"; frequencies " 0.617977528089888 0.382022471910112"; depth 89 ; unknown ; N/A GL193217.1 samtools variation 133629 133629 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 81 ; unknown ; N/A GL193217.1 samtools variation 133675 133675 . . . alleles " A C"; frequencies " 0.551724137931034 0.448275862068966"; depth 87 ; unknown ; N/A GL193217.1 samtools variation 146258 146258 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193217.1 samtools variation 146271 146271 . . . alleles " C A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL193217.1 samtools variation 150678 150678 . . . alleles " C A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193217.1 samtools variation 153519 153519 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193217.1 samtools variation 153527 153527 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193217.1 samtools variation 159540 159540 . . . alleles " G A"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193217.1 samtools variation 179735 179735 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193217.1 samtools variation 182613 182613 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193217.1 samtools variation 182628 182628 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193217.1 samtools variation 182747 182747 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193217.1 samtools variation 185780 185780 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193217.1 samtools variation 186331 186331 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193217.1 samtools variation 188289 188289 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193217.1 samtools variation 190937 190937 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193217.1 samtools variation 191833 191833 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193217.1 samtools variation 192107 192107 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193217.1 samtools variation 198346 198346 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; known ; N/A GL193217.1 samtools variation 217066 217066 . . . alleles " G C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL193217.1 samtools variation 217193 217193 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193217.1 samtools variation 221006 221006 . . . alleles " T C"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; unknown ; N/A GL193217.1 samtools variation 221074 221074 . . . alleles " T C"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; unknown ; N/A GL193217.1 samtools variation 221104 221104 . . . alleles " G C"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; N/A GL193217.1 samtools variation 221200 221200 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193217.1 samtools variation 221203 221203 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193217.1 samtools variation 221962 221962 . . . alleles " G T"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; unknown ; N/A GL193217.1 samtools variation 221963 221963 . . . alleles " T G"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; unknown ; N/A GL193217.1 samtools variation 222100 222100 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 44 ; unknown ; N/A GL193217.1 samtools variation 229310 229310 . . . alleles " A C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193218.1 samtools variation 34735 34735 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193218.1 samtools variation 54152 54152 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL193218.1 samtools variation 116731 116731 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193218.1 samtools variation 129116 129116 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193218.1 samtools variation 131374 131374 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193218.1 samtools variation 463668 463668 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193218.1 samtools variation 467014 467014 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193218.1 samtools variation 502988 502988 . . . alleles " G A"; frequencies " 0.215384615384615 0.784615384615385"; depth 65 ; known ; synonymous GL193218.1 samtools variation 570392 570392 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL193218.1 samtools variation 616170 616170 . . . alleles " C A"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL193218.1 samtools variation 662321 662321 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; synonymous GL193218.1 samtools variation 762329 762329 . . . alleles " A T"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL193219.1 samtools variation 119794 119794 . . . alleles " A G"; frequencies " 0.607142857142857 0.392857142857143"; depth 56 ; unknown ; N/A GL193219.1 samtools variation 549771 549771 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193219.1 samtools variation 560405 560405 . . . alleles " G T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL193219.1 samtools variation 562682 562682 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193219.1 samtools variation 563680 563680 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193219.1 samtools variation 612419 612419 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193219.1 samtools variation 612999 612999 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193219.1 samtools variation 657598 657598 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; non-synonymous GL193219.1 samtools variation 676666 676666 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193219.1 samtools variation 677989 677989 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193219.1 samtools variation 833674 833674 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193220.1 samtools variation 80791 80791 . . . alleles " C T"; frequencies " 0.573770491803279 0.426229508196721"; depth 61 ; known ; N/A GL193220.1 samtools variation 85359 85359 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193220.1 samtools variation 88059 88059 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; known ; N/A GL193220.1 samtools variation 100547 100547 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193220.1 samtools variation 224544 224544 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 48 ; unknown ; N/A GL193220.1 samtools variation 237386 237386 . . . alleles " A G"; frequencies " 0.325 0.675"; depth 40 ; known ; N/A GL193220.1 samtools variation 237650 237650 . . . alleles " G T"; frequencies " 0.547619047619048 0.452380952380952"; depth 42 ; unknown ; N/A GL193220.1 samtools variation 311340 311340 . . . alleles " A G"; frequencies " 0.389705882352941 0.610294117647059"; depth 136 ; known ; N/A GL193220.1 samtools variation 321190 321190 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL193220.1 samtools variation 322688 322688 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193220.1 samtools variation 324780 324780 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193220.1 samtools variation 326245 326245 . . . alleles " G C"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL193220.1 samtools variation 326250 326250 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL193220.1 samtools variation 352083 352083 . . . alleles " T C"; frequencies " 0.49236641221374 0.50763358778626"; depth 262 ; unknown ; synonymous GL193220.1 samtools variation 355085 355085 . . . alleles " T C"; frequencies " 0.482142857142857 0.517857142857143"; depth 392 ; unknown ; N/A GL193220.1 samtools variation 355441 355441 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193220.1 samtools variation 355467 355467 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193220.1 samtools variation 355880 355880 . . . alleles " T C"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL193220.1 samtools variation 357199 357199 . . . alleles " T C"; frequencies " 0.366197183098592 0.633802816901408"; depth 71 ; unknown ; N/A GL193220.1 samtools variation 357634 357634 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193220.1 samtools variation 358071 358071 . . . alleles " C A"; frequencies " 0.528 0.472"; depth 125 ; unknown ; N/A GL193220.1 samtools variation 358175 358175 . . . alleles " A T"; frequencies " 0.310344827586207 0.689655172413793"; depth 87 ; known ; N/A GL193220.1 samtools variation 358222 358222 . . . alleles " C A"; frequencies " 0.630434782608696 0.369565217391304"; depth 46 ; unknown ; N/A GL193220.1 samtools variation 358296 358296 . . . alleles " G A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193220.1 samtools variation 358556 358556 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193220.1 samtools variation 359528 359528 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193220.1 samtools variation 361231 361231 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193220.1 samtools variation 365713 365713 . . . alleles " C T"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL193220.1 samtools variation 366147 366147 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193220.1 samtools variation 368218 368218 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193220.1 samtools variation 375159 375159 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193220.1 samtools variation 382864 382864 . . . alleles " C A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193220.1 samtools variation 488277 488277 . . . alleles " C A"; frequencies " 0.794642857142857 0.205357142857143"; depth 112 ; unknown ; N/A GL193220.1 samtools variation 488278 488278 . . . alleles " T A"; frequencies " 0.780952380952381 0.219047619047619"; depth 105 ; unknown ; N/A GL193221.1 samtools variation 532656 532656 . . . alleles " G A"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; N/A GL193221.1 samtools variation 655055 655055 . . . alleles " C A"; frequencies " 0.753623188405797 0.246376811594203"; depth 69 ; unknown ; N/A GL193221.1 samtools variation 779056 779056 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193221.1 samtools variation 781007 781007 . . . alleles " G A"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL193221.1 samtools variation 781156 781156 . . . alleles " G C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193221.1 samtools variation 783984 783984 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193222.1 samtools variation 200257 200257 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; synonymous GL193222.1 samtools variation 202231 202231 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193222.1 samtools variation 239378 239378 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; non-synonymous GL193222.1 samtools variation 243320 243320 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193222.1 samtools variation 283142 283142 . . . alleles " C T"; frequencies " 0.210526315789474 0.789473684210526"; depth 38 ; unknown ; synonymous GL193222.1 samtools variation 293884 293884 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL193222.1 samtools variation 295274 295274 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193222.1 samtools variation 295721 295721 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193222.1 samtools variation 295811 295811 . . . alleles " C T"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL193222.1 samtools variation 362397 362397 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; known ; synonymous GL193222.1 samtools variation 362540 362540 . . . alleles " C T"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; non-synonymous GL193222.1 samtools variation 363149 363149 . . . alleles " G C"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; non-synonymous GL193222.1 samtools variation 403689 403689 . . . alleles " A T"; frequencies " 0.258064516129032 0.741935483870968"; depth 62 ; known ; N/A GL193222.1 samtools variation 403761 403761 . . . alleles " G A"; frequencies " 0.232394366197183 0.767605633802817"; depth 142 ; known ; N/A GL193222.1 samtools variation 403883 403883 . . . alleles " C T"; frequencies " 0.71830985915493 0.28169014084507"; depth 71 ; known ; N/A GL193222.1 samtools variation 410591 410591 . . . alleles " C A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL193222.1 samtools variation 489287 489287 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193222.1 samtools variation 489288 489288 . . . alleles " A T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193222.1 samtools variation 490421 490421 . . . alleles " C T"; frequencies " 0.275 0.725"; depth 80 ; unknown ; N/A GL193222.1 samtools variation 491497 491497 . . . alleles " C T"; frequencies " 0.612244897959184 0.387755102040816"; depth 147 ; unknown ; N/A GL193222.1 samtools variation 492040 492040 . . . alleles " C T"; frequencies " 0.795774647887324 0.204225352112676"; depth 142 ; unknown ; N/A GL193222.1 samtools variation 492042 492042 . . . alleles " C T"; frequencies " 0.590604026845638 0.409395973154362"; depth 149 ; unknown ; N/A GL193222.1 samtools variation 492090 492090 . . . alleles " G A"; frequencies " 0.543589743589744 0.456410256410256"; depth 195 ; unknown ; N/A GL193222.1 samtools variation 492100 492100 . . . alleles " G A"; frequencies " 0.573248407643312 0.426751592356688"; depth 157 ; unknown ; N/A GL193222.1 samtools variation 492201 492201 . . . alleles " C T"; frequencies " 0.514285714285714 0.485714285714286"; depth 105 ; unknown ; N/A GL193222.1 samtools variation 492376 492376 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 57 ; unknown ; N/A GL193222.1 samtools variation 492698 492698 . . . alleles " T C"; frequencies " 0.551020408163265 0.448979591836735"; depth 49 ; unknown ; N/A GL193222.1 samtools variation 493441 493441 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; N/A GL193222.1 samtools variation 493460 493460 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL193222.1 samtools variation 493514 493514 . . . alleles " T A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193222.1 samtools variation 494130 494130 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193222.1 samtools variation 494359 494359 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193223.1 samtools variation 3471 3471 . . . alleles " G A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; synonymous GL193224.1 samtools variation 50257 50257 . . . alleles " T A"; frequencies " 0.767123287671233 0.232876712328767"; depth 73 ; unknown ; N/A GL193224.1 samtools variation 97208 97208 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL193224.1 samtools variation 99814 99814 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193224.1 samtools variation 115169 115169 . . . alleles " T C"; frequencies " 0.493827160493827 0.506172839506173"; depth 81 ; unknown ; N/A GL193224.1 samtools variation 192690 192690 . . . alleles " C T"; frequencies " 0.355555555555556 0.644444444444444"; depth 45 ; known ; N/A GL193224.1 samtools variation 275302 275302 . . . alleles " A T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL193224.1 samtools variation 318044 318044 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; non-synonymous GL193224.1 samtools variation 740847 740847 . . . alleles " C T"; frequencies " 0.788235294117647 0.211764705882353"; depth 85 ; known ; N/A GL193225.1 samtools variation 334213 334213 . . . alleles " A G"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; known ; N/A GL193225.1 samtools variation 352612 352612 . . . alleles " T C"; frequencies " 0.594936708860759 0.405063291139241"; depth 79 ; known ; non-synonymous GL193225.1 samtools variation 366716 366716 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; known ; N/A GL193225.1 samtools variation 573990 573990 . . . alleles " C T"; frequencies " 0.481818181818182 0.518181818181818"; depth 110 ; known ; N/A GL193226.1 samtools variation 36991 36991 . . . alleles " T G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193226.1 samtools variation 43487 43487 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL193226.1 samtools variation 43975 43975 . . . alleles " T G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL193226.1 samtools variation 51365 51365 . . . alleles " T C"; frequencies " 0.525139664804469 0.474860335195531"; depth 358 ; known ; N/A GL193226.1 samtools variation 52518 52518 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193226.1 samtools variation 52992 52992 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 40 ; known ; N/A GL193226.1 samtools variation 53554 53554 . . . alleles " C T"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; known ; N/A GL193226.1 samtools variation 60728 60728 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193226.1 samtools variation 124595 124595 . . . alleles " C A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193226.1 samtools variation 125476 125476 . . . alleles " T C"; frequencies " 0.439393939393939 0.560606060606061"; depth 66 ; unknown ; synonymous GL193226.1 samtools variation 129115 129115 . . . alleles " A C"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; unknown ; N/A GL193226.1 samtools variation 129143 129143 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL193226.1 samtools variation 130654 130654 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193226.1 samtools variation 317147 317147 . . . alleles " T C"; frequencies " 0.20353982300885 0.79646017699115"; depth 113 ; known ; synonymous GL193226.1 samtools variation 317189 317189 . . . alleles " A G"; frequencies " 0.704545454545455 0.295454545454545"; depth 88 ; known ; synonymous GL193226.1 samtools variation 326695 326695 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193226.1 samtools variation 326756 326756 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL193226.1 samtools variation 330924 330924 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193226.1 samtools variation 371579 371579 . . . alleles " T A"; frequencies " 0.576923076923077 0.423076923076923"; depth 52 ; known ; N/A GL193226.1 samtools variation 371636 371636 . . . alleles " A G"; frequencies " 0.406593406593407 0.593406593406593"; depth 91 ; known ; N/A GL193226.1 samtools variation 371716 371716 . . . alleles " A G"; frequencies " 0.404761904761905 0.595238095238095"; depth 42 ; known ; N/A GL193226.1 samtools variation 372149 372149 . . . alleles " T C"; frequencies " 0.522727272727273 0.477272727272727"; depth 88 ; known ; N/A GL193226.1 samtools variation 372486 372486 . . . alleles " T C"; frequencies " 0.577464788732394 0.422535211267606"; depth 71 ; known ; N/A GL193226.1 samtools variation 372509 372509 . . . alleles " T C"; frequencies " 0.4125 0.5875"; depth 80 ; known ; N/A GL193226.1 samtools variation 373442 373442 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 33 ; known ; synonymous GL193226.1 samtools variation 373514 373514 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 36 ; known ; synonymous GL193226.1 samtools variation 373692 373692 . . . alleles " G A"; frequencies " 0.672727272727273 0.327272727272727"; depth 55 ; known ; non-synonymous GL193226.1 samtools variation 373701 373701 . . . alleles " G A"; frequencies " 0.672413793103448 0.327586206896552"; depth 58 ; known ; non-synonymous GL193226.1 samtools variation 373901 373901 . . . alleles " G A"; frequencies " 0.597014925373134 0.402985074626866"; depth 67 ; known ; synonymous GL193226.1 samtools variation 373907 373907 . . . alleles " T C"; frequencies " 0.597014925373134 0.402985074626866"; depth 67 ; known ; synonymous GL193226.1 samtools variation 458234 458234 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL193226.1 samtools variation 458809 458809 . . . alleles " C T"; frequencies " 0.426829268292683 0.573170731707317"; depth 82 ; unknown ; N/A GL193226.1 samtools variation 458938 458938 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 44 ; known ; N/A GL193226.1 samtools variation 458958 458958 . . . alleles " T C"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL193226.1 samtools variation 459171 459171 . . . alleles " T G"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; known ; N/A GL193226.1 samtools variation 656231 656231 . . . alleles " G A"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; known ; N/A GL193226.1 samtools variation 762936 762936 . . . alleles " T C"; frequencies " 0.447761194029851 0.552238805970149"; depth 67 ; known ; synonymous GL193226.1 samtools variation 764900 764900 . . . alleles " G C"; frequencies " 0.691176470588235 0.308823529411765"; depth 68 ; unknown ; N/A GL193226.1 samtools variation 764963 764963 . . . alleles " T A"; frequencies " 0.744444444444444 0.255555555555556"; depth 90 ; unknown ; N/A GL193226.1 samtools variation 773016 773016 . . . alleles " T C"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL193226.1 samtools variation 773563 773563 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 58 ; unknown ; N/A GL193226.1 samtools variation 774895 774895 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL193226.1 samtools variation 775269 775269 . . . alleles " C G"; frequencies " 0.212121212121212 0.787878787878788"; depth 33 ; known ; N/A GL193226.1 samtools variation 775813 775813 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL193226.1 samtools variation 775816 775816 . . . alleles " A T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193227.1 samtools variation 24689 24689 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193227.1 samtools variation 25824 25824 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193227.1 samtools variation 26177 26177 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL193227.1 samtools variation 35631 35631 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL193227.1 samtools variation 37646 37646 . . . alleles " C A"; frequencies " 0.736842105263158 0.263157894736842"; depth 76 ; unknown ; N/A GL193227.1 samtools variation 112668 112668 . . . alleles " C G"; frequencies " 0.640287769784173 0.359712230215827"; depth 556 ; unknown ; synonymous GL193227.1 samtools variation 113163 113163 . . . alleles " A T"; frequencies " 0.604347826086956 0.395652173913043"; depth 230 ; unknown ; N/A GL193227.1 samtools variation 115114 115114 . . . alleles " T C"; frequencies " 0.391257995735608 0.608528784648188"; depth 4690 ; known ; synonymous GL193227.1 samtools variation 115415 115415 . . . alleles " T C"; frequencies " 0.37384140061792 0.62615859938208"; depth 971 ; known ; N/A GL193227.1 samtools variation 115823 115823 . . . alleles " A G"; frequencies " 0.705 0.295"; depth 200 ; unknown ; N/A GL193227.1 samtools variation 122889 122889 . . . alleles " T C"; frequencies " 0.51676698194325 0.48323301805675"; depth 3489 ; known ; synonymous GL193228.1 samtools variation 101890 101890 . . . alleles " C T"; frequencies " 0.326923076923077 0.673076923076923"; depth 52 ; known ; synonymous GL193228.1 samtools variation 155290 155290 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193228.1 samtools variation 169329 169329 . . . alleles " A G"; frequencies " 0.352112676056338 0.647887323943662"; depth 71 ; unknown ; N/A GL193228.1 samtools variation 203095 203095 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193228.1 samtools variation 205848 205848 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 147 ; unknown ; N/A GL193228.1 samtools variation 388897 388897 . . . alleles " A T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL193228.1 samtools variation 391858 391858 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193228.1 samtools variation 401755 401755 . . . alleles " G A"; frequencies " 0.394736842105263 0.605263157894737"; depth 38 ; unknown ; N/A GL193228.1 samtools variation 456274 456274 . . . alleles " T C"; frequencies " 0.646153846153846 0.353846153846154"; depth 65 ; known ; N/A GL193228.1 samtools variation 579767 579767 . . . alleles " T C"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; known ; non-synonymous GL193228.1 samtools variation 600756 600756 . . . alleles " C A"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; known ; synonymous GL193228.1 samtools variation 606802 606802 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193228.1 samtools variation 607670 607670 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL193228.1 samtools variation 618537 618537 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193228.1 samtools variation 626003 626003 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 81 ; unknown ; synonymous GL193228.1 samtools variation 656895 656895 . . . alleles " C G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193228.1 samtools variation 738674 738674 . . . alleles " T A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193228.1 samtools variation 752725 752725 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193228.1 samtools variation 779920 779920 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; known ; synonymous GL193228.1 samtools variation 785108 785108 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 51 ; known ; synonymous GL193232.1 samtools variation 492428 492428 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193232.1 samtools variation 499358 499358 . . . alleles " G A"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL193232.1 samtools variation 598601 598601 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; synonymous GL193232.1 samtools variation 740658 740658 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; known ; N/A GL193232.1 samtools variation 741302 741302 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL193232.1 samtools variation 817557 817557 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193233.1 samtools variation 83099 83099 . . . alleles " G T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193233.1 samtools variation 148746 148746 . . . alleles " C T"; frequencies " 0.770538243626062 0.22851746931067"; depth 1059 ; unknown ; non-synonymous GL193233.1 samtools variation 152750 152750 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193233.1 samtools variation 153258 153258 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193233.1 samtools variation 157799 157799 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193233.1 samtools variation 159549 159549 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193233.1 samtools variation 182497 182497 . . . alleles " T C"; frequencies " 0.509259259259259 0.490740740740741"; depth 108 ; unknown ; N/A GL193233.1 samtools variation 229514 229514 . . . alleles " C T"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL193233.1 samtools variation 281238 281238 . . . alleles " T C"; frequencies " 0.798850574712644 0.201149425287356"; depth 174 ; unknown ; N/A GL193233.1 samtools variation 284273 284273 . . . alleles " T C"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; unknown ; N/A GL193233.1 samtools variation 290698 290698 . . . alleles " G T"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL193233.1 samtools variation 306967 306967 . . . alleles " C T"; frequencies " 0.236111111111111 0.763888888888889"; depth 72 ; unknown ; N/A GL193235.1 samtools variation 54633 54633 . . . alleles " A T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193240.1 samtools variation 483678 483678 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 44 ; unknown ; non-synonymous GL193240.1 samtools variation 724747 724747 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193240.1 samtools variation 780632 780632 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193240.1 samtools variation 784244 784244 . . . alleles " A T"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193240.1 samtools variation 784875 784875 . . . alleles " C T"; frequencies " 0.797872340425532 0.202127659574468"; depth 94 ; unknown ; N/A GL193240.1 samtools variation 786929 786929 . . . alleles " A T"; frequencies " 0.639004149377593 0.360995850622407"; depth 241 ; unknown ; N/A GL193240.1 samtools variation 787251 787251 . . . alleles " C T"; frequencies " 0.278195488721804 0.721804511278195"; depth 133 ; known ; N/A GL193240.1 samtools variation 787658 787658 . . . alleles " G T"; frequencies " 0.264367816091954 0.735632183908046"; depth 261 ; known ; N/A GL193240.1 samtools variation 788069 788069 . . . alleles " A G"; frequencies " 0.688888888888889 0.311111111111111"; depth 45 ; unknown ; N/A GL193240.1 samtools variation 788631 788631 . . . alleles " G A"; frequencies " 0.353535353535354 0.646464646464647"; depth 99 ; unknown ; N/A GL193240.1 samtools variation 789127 789127 . . . alleles " C T"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; known ; N/A GL193240.1 samtools variation 789718 789718 . . . alleles " G A"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; known ; N/A GL193240.1 samtools variation 791298 791298 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL193240.1 samtools variation 797432 797432 . . . alleles " G A"; frequencies " 0.234042553191489 0.765957446808511"; depth 47 ; known ; N/A GL193240.1 samtools variation 804011 804011 . . . alleles " C T"; frequencies " 0.342857142857143 0.657142857142857"; depth 35 ; known ; N/A GL193240.1 samtools variation 805277 805277 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193240.1 samtools variation 805571 805571 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193240.1 samtools variation 805635 805635 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193240.1 samtools variation 808948 808948 . . . alleles " G A"; frequencies " 0.641509433962264 0.358490566037736"; depth 106 ; known ; synonymous GL193240.1 samtools variation 833310 833310 . . . alleles " T C"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; known ; N/A GL193243.1 samtools variation 154778 154778 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL193243.1 samtools variation 155600 155600 . . . alleles " A G"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; unknown ; synonymous GL193243.1 samtools variation 197077 197077 . . . alleles " C T"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193243.1 samtools variation 197241 197241 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193243.1 samtools variation 208044 208044 . . . alleles " C T"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL193243.1 samtools variation 208155 208155 . . . alleles " A G"; frequencies " 0.576271186440678 0.423728813559322"; depth 59 ; unknown ; N/A GL193243.1 samtools variation 209035 209035 . . . alleles " T C"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL193243.1 samtools variation 212840 212840 . . . alleles " T C"; frequencies " 0.641509433962264 0.358490566037736"; depth 53 ; unknown ; synonymous GL193243.1 samtools variation 294813 294813 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193243.1 samtools variation 608345 608345 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; non-synonymous GL193243.1 samtools variation 608382 608382 . . . alleles " T G"; frequencies " 0.35 0.65"; depth 20 ; known ; non-synonymous GL193243.1 samtools variation 608391 608391 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; known ; synonymous GL193243.1 samtools variation 632375 632375 . . . alleles " A G"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; synonymous GL193243.1 samtools variation 660088 660088 . . . alleles " G A"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; synonymous GL193243.1 samtools variation 776936 776936 . . . alleles " T A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193243.1 samtools variation 784956 784956 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; known ; N/A GL193243.1 samtools variation 819530 819530 . . . alleles " G T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193243.1 samtools variation 821154 821154 . . . alleles " G T"; frequencies " 0.737704918032787 0.262295081967213"; depth 61 ; unknown ; N/A GL193243.1 samtools variation 821918 821918 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL193243.1 samtools variation 822067 822067 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193243.1 samtools variation 822844 822844 . . . alleles " T C"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL193243.1 samtools variation 823554 823554 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL193243.1 samtools variation 823562 823562 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL193243.1 samtools variation 823779 823779 . . . alleles " A G"; frequencies " 0.472222222222222 0.527777777777778"; depth 36 ; unknown ; N/A GL193243.1 samtools variation 824687 824687 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 50 ; unknown ; N/A GL193244.1 samtools variation 114191 114191 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193244.1 samtools variation 120281 120281 . . . alleles " C A"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL193244.1 samtools variation 122433 122433 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193244.1 samtools variation 136605 136605 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193244.1 samtools variation 163610 163610 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; synonymous GL193244.1 samtools variation 191087 191087 . . . alleles " G C"; frequencies " 0.28125 0.71875"; depth 32 ; known ; non-synonymous GL193244.1 samtools variation 218024 218024 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193244.1 samtools variation 220554 220554 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; known ; N/A GL193244.1 samtools variation 243046 243046 . . . alleles " T C"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; synonymous GL193244.1 samtools variation 792031 792031 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 45 ; known ; N/A GL193244.1 samtools variation 800392 800392 . . . alleles " T C"; frequencies " 0.581395348837209 0.418604651162791"; depth 43 ; unknown ; N/A GL193244.1 samtools variation 801254 801254 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 36 ; known ; N/A GL193244.1 samtools variation 802649 802649 . . . alleles " C T"; frequencies " 0.480769230769231 0.519230769230769"; depth 52 ; known ; N/A GL193244.1 samtools variation 815063 815063 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL193244.1 samtools variation 816595 816595 . . . alleles " C T"; frequencies " 0.669642857142857 0.330357142857143"; depth 224 ; unknown ; N/A GL193244.1 samtools variation 818376 818376 . . . alleles " A G"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; known ; N/A GL193244.1 samtools variation 818410 818410 . . . alleles " G A"; frequencies " 0.62 0.38"; depth 50 ; unknown ; N/A GL193244.1 samtools variation 818510 818510 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 57 ; known ; N/A GL193244.1 samtools variation 818521 818521 . . . alleles " T C"; frequencies " 0.671641791044776 0.328358208955224"; depth 67 ; unknown ; N/A GL193244.1 samtools variation 821293 821293 . . . alleles " C T"; frequencies " 0.746268656716418 0.253731343283582"; depth 67 ; unknown ; N/A GL193244.1 samtools variation 822704 822704 . . . alleles " G C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193244.1 samtools variation 823364 823364 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; N/A GL193244.1 samtools variation 824393 824393 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL193244.1 samtools variation 824401 824401 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL193244.1 samtools variation 827769 827769 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193244.1 samtools variation 830773 830773 . . . alleles " G C"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL193244.1 samtools variation 831690 831690 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL193246.1 samtools variation 79346 79346 . . . alleles " A T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193246.1 samtools variation 161040 161040 . . . alleles " T C"; frequencies " 0.523076923076923 0.476923076923077"; depth 65 ; unknown ; N/A GL193246.1 samtools variation 161164 161164 . . . alleles " T A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193246.1 samtools variation 164006 164006 . . . alleles " C T"; frequencies " 0.683168316831683 0.316831683168317"; depth 101 ; known ; N/A GL193246.1 samtools variation 165801 165801 . . . alleles " A G"; frequencies " 0.394230769230769 0.605769230769231"; depth 208 ; unknown ; N/A GL193246.1 samtools variation 166291 166291 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193246.1 samtools variation 177096 177096 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193246.1 samtools variation 177298 177298 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193246.1 samtools variation 177357 177357 . . . alleles " A G"; frequencies " 0.76 0.24"; depth 50 ; unknown ; N/A GL193246.1 samtools variation 177536 177536 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; known ; N/A GL193246.1 samtools variation 178431 178431 . . . alleles " T C"; frequencies " 0.322033898305085 0.677966101694915"; depth 59 ; known ; N/A GL193246.1 samtools variation 178731 178731 . . . alleles " C G"; frequencies " 0.689393939393939 0.310606060606061"; depth 132 ; known ; N/A GL193246.1 samtools variation 179488 179488 . . . alleles " A G"; frequencies " 0.761467889908257 0.238532110091743"; depth 109 ; unknown ; N/A GL193246.1 samtools variation 184583 184583 . . . alleles " A G"; frequencies " 0.2625 0.7375"; depth 80 ; known ; synonymous GL193246.1 samtools variation 198704 198704 . . . alleles " A G"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; non-synonymous GL193246.1 samtools variation 199246 199246 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 70 ; unknown ; synonymous GL193246.1 samtools variation 199555 199555 . . . alleles " A G"; frequencies " 0.486486486486487 0.513513513513513"; depth 37 ; unknown ; synonymous GL193246.1 samtools variation 219796 219796 . . . alleles " T A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; synonymous GL193246.1 samtools variation 248506 248506 . . . alleles " A G"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; unknown ; synonymous GL193246.1 samtools variation 263581 263581 . . . alleles " G C"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; synonymous GL193246.1 samtools variation 360668 360668 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193246.1 samtools variation 368184 368184 . . . alleles " C A"; frequencies " 0.30379746835443 0.69620253164557"; depth 79 ; known ; N/A GL193246.1 samtools variation 370699 370699 . . . alleles " A G"; frequencies " 0.206193649549196 0.793806350450804"; depth 2551 ; unknown ; synonymous GL193246.1 samtools variation 373003 373003 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193246.1 samtools variation 411212 411212 . . . alleles " T C"; frequencies " 0.427083333333333 0.572916666666667"; depth 96 ; unknown ; synonymous GL193246.1 samtools variation 413361 413361 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 99 ; unknown ; synonymous GL193246.1 samtools variation 446829 446829 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193246.1 samtools variation 778806 778806 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193246.1 samtools variation 782496 782496 . . . alleles " A T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193246.1 samtools variation 786103 786103 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193246.1 samtools variation 786118 786118 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193246.1 samtools variation 788924 788924 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193246.1 samtools variation 788955 788955 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL193246.1 samtools variation 789024 789024 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL193246.1 samtools variation 789697 789697 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193246.1 samtools variation 796680 796680 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 80 ; unknown ; N/A GL193246.1 samtools variation 798731 798731 . . . alleles " A G"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; N/A GL193246.1 samtools variation 800265 800265 . . . alleles " C T"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL193246.1 samtools variation 800335 800335 . . . alleles " A G"; frequencies " 0.45 0.55"; depth 40 ; unknown ; N/A GL193246.1 samtools variation 800492 800492 . . . alleles " C T"; frequencies " 0.568181818181818 0.431818181818182"; depth 44 ; unknown ; N/A GL193246.1 samtools variation 800784 800784 . . . alleles " T C"; frequencies " 0.635514018691589 0.364485981308411"; depth 107 ; unknown ; N/A GL193246.1 samtools variation 800811 800811 . . . alleles " G T"; frequencies " 0.673469387755102 0.326530612244898"; depth 49 ; unknown ; N/A GL193246.1 samtools variation 800939 800939 . . . alleles " G A"; frequencies " 0.709876543209877 0.290123456790123"; depth 162 ; unknown ; N/A GL193246.1 samtools variation 801210 801210 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 56 ; unknown ; synonymous GL193246.1 samtools variation 802380 802380 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193246.1 samtools variation 802391 802391 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193246.1 samtools variation 803189 803189 . . . alleles " T C"; frequencies " 0.650943396226415 0.349056603773585"; depth 212 ; unknown ; synonymous GL193246.1 samtools variation 809017 809017 . . . alleles " C T"; frequencies " 0.656 0.344"; depth 125 ; unknown ; non-synonymous GL193246.1 samtools variation 809024 809024 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 124 ; unknown ; synonymous GL193246.1 samtools variation 811815 811815 . . . alleles " C G"; frequencies " 0.35036496350365 0.64963503649635"; depth 137 ; unknown ; synonymous GL193246.1 samtools variation 812938 812938 . . . alleles " C T"; frequencies " 0.354330708661417 0.645669291338583"; depth 127 ; unknown ; synonymous GL193246.1 samtools variation 813479 813479 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193246.1 samtools variation 813539 813539 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 51 ; unknown ; N/A GL193246.1 samtools variation 813656 813656 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL193246.1 samtools variation 814461 814461 . . . alleles " T C"; frequencies " 0.242647058823529 0.757352941176471"; depth 272 ; unknown ; N/A GL193246.1 samtools variation 814675 814675 . . . alleles " C A"; frequencies " 0.53469387755102 0.46530612244898"; depth 245 ; unknown ; N/A GL193246.1 samtools variation 815814 815814 . . . alleles " T C"; frequencies " 0.242214532871972 0.757785467128028"; depth 289 ; unknown ; N/A GL193246.1 samtools variation 815876 815876 . . . alleles " T C"; frequencies " 0.222672064777328 0.777327935222672"; depth 247 ; unknown ; N/A GL193247.1 samtools variation 251710 251710 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; synonymous GL193247.1 samtools variation 251734 251734 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; synonymous GL193248.1 samtools variation 321386 321386 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193248.1 samtools variation 337437 337437 . . . alleles " A G"; frequencies " 0.775862068965517 0.224137931034483"; depth 58 ; unknown ; non-synonymous GL193248.1 samtools variation 820550 820550 . . . alleles " A G"; frequencies " 0.770676691729323 0.229323308270677"; depth 266 ; unknown ; synonymous GL193249.1 samtools variation 100524 100524 . . . alleles " T G"; frequencies " 0.534883720930233 0.465116279069767"; depth 43 ; unknown ; N/A GL193249.1 samtools variation 100541 100541 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; unknown ; N/A GL193249.1 samtools variation 183083 183083 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193249.1 samtools variation 213058 213058 . . . alleles " G A"; frequencies " 0.490196078431373 0.509803921568627"; depth 51 ; unknown ; synonymous GL193249.1 samtools variation 243539 243539 . . . alleles " G A"; frequencies " 0.706896551724138 0.293103448275862"; depth 174 ; unknown ; non-synonymous GL193249.1 samtools variation 262990 262990 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 76 ; unknown ; N/A GL193249.1 samtools variation 264850 264850 . . . alleles " A G"; frequencies " 0.288 0.712"; depth 125 ; unknown ; N/A GL193249.1 samtools variation 265691 265691 . . . alleles " C T"; frequencies " 0.646258503401361 0.353741496598639"; depth 147 ; unknown ; non-synonymous GL193249.1 samtools variation 266810 266810 . . . alleles " T A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193249.1 samtools variation 270942 270942 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL193249.1 samtools variation 270979 270979 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL193249.1 samtools variation 272033 272033 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193249.1 samtools variation 272102 272102 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193249.1 samtools variation 288279 288279 . . . alleles " C A"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; unknown ; N/A GL193249.1 samtools variation 309092 309092 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193249.1 samtools variation 311247 311247 . . . alleles " C T"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; N/A GL193249.1 samtools variation 315024 315024 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193249.1 samtools variation 362999 362999 . . . alleles " C T"; frequencies " 0.682795698924731 0.317204301075269"; depth 186 ; unknown ; N/A GL193249.1 samtools variation 363239 363239 . . . alleles " C T"; frequencies " 0.711594202898551 0.288405797101449"; depth 690 ; unknown ; N/A GL193249.1 samtools variation 363244 363244 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 707 ; unknown ; N/A GL193249.1 samtools variation 364093 364093 . . . alleles " C T"; frequencies " 0.723684210526316 0.276315789473684"; depth 76 ; unknown ; N/A GL193249.1 samtools variation 364138 364138 . . . alleles " G A"; frequencies " 0.704545454545455 0.295454545454545"; depth 88 ; unknown ; N/A GL193249.1 samtools variation 364147 364147 . . . alleles " G A"; frequencies " 0.34375 0.65625"; depth 96 ; unknown ; N/A GL193249.1 samtools variation 364258 364258 . . . alleles " A G"; frequencies " 0.748062015503876 0.251937984496124"; depth 258 ; unknown ; N/A GL193249.1 samtools variation 364378 364378 . . . alleles " T C"; frequencies " 0.434285714285714 0.565714285714286"; depth 175 ; unknown ; N/A GL193249.1 samtools variation 364390 364390 . . . alleles " A G"; frequencies " 0.777173913043478 0.222826086956522"; depth 184 ; unknown ; N/A GL193249.1 samtools variation 364429 364429 . . . alleles " G A"; frequencies " 0.742489270386266 0.257510729613734"; depth 233 ; unknown ; N/A GL193249.1 samtools variation 364497 364497 . . . alleles " A G"; frequencies " 0.363128491620112 0.636871508379888"; depth 537 ; unknown ; N/A GL193249.1 samtools variation 364602 364602 . . . alleles " A T"; frequencies " 0.367609254498715 0.632390745501285"; depth 389 ; unknown ; N/A GL193249.1 samtools variation 366631 366631 . . . alleles " C T"; frequencies " 0.448717948717949 0.551282051282051"; depth 78 ; unknown ; N/A GL193249.1 samtools variation 366692 366692 . . . alleles " T C"; frequencies " 0.381443298969072 0.618556701030928"; depth 97 ; unknown ; N/A GL193249.1 samtools variation 367205 367205 . . . alleles " G A"; frequencies " 0.794871794871795 0.205128205128205"; depth 117 ; unknown ; N/A GL193249.1 samtools variation 368643 368643 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 126 ; unknown ; synonymous GL193249.1 samtools variation 385306 385306 . . . alleles " T C"; frequencies " 0.581967213114754 0.418032786885246"; depth 122 ; unknown ; synonymous GL193249.1 samtools variation 388476 388476 . . . alleles " T A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193249.1 samtools variation 389454 389454 . . . alleles " G C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL193249.1 samtools variation 389845 389845 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193249.1 samtools variation 390328 390328 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; N/A GL193249.1 samtools variation 390566 390566 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193249.1 samtools variation 391400 391400 . . . alleles " A G"; frequencies " 0.683544303797468 0.316455696202532"; depth 237 ; unknown ; non-synonymous GL193249.1 samtools variation 392212 392212 . . . alleles " C T"; frequencies " 0.494505494505495 0.505494505494505"; depth 182 ; unknown ; synonymous GL193249.1 samtools variation 392301 392301 . . . alleles " C T"; frequencies " 0.563218390804598 0.436781609195402"; depth 261 ; unknown ; non-synonymous GL193249.1 samtools variation 392383 392383 . . . alleles " C T"; frequencies " 0.556213017751479 0.443786982248521"; depth 169 ; unknown ; synonymous GL193249.1 samtools variation 416568 416568 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 54 ; unknown ; synonymous GL193249.1 samtools variation 417072 417072 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193249.1 samtools variation 418426 418426 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193249.1 samtools variation 418816 418816 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL193249.1 samtools variation 739874 739874 . . . alleles " A T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193249.1 samtools variation 827530 827530 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 96 ; unknown ; synonymous GL193251.1 samtools variation 229349 229349 . . . alleles " C T"; frequencies " 0.635593220338983 0.364406779661017"; depth 118 ; unknown ; N/A GL193251.1 samtools variation 229451 229451 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 90 ; unknown ; N/A GL193251.1 samtools variation 229664 229664 . . . alleles " C T"; frequencies " 0.580246913580247 0.407407407407407"; depth 81 ; unknown ; N/A GL193251.1 samtools variation 229949 229949 . . . alleles " G C"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL193251.1 samtools variation 230017 230017 . . . alleles " C T"; frequencies " 0.456521739130435 0.543478260869565"; depth 46 ; unknown ; N/A GL193251.1 samtools variation 230234 230234 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 54 ; unknown ; N/A GL193251.1 samtools variation 265258 265258 . . . alleles " T A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193251.1 samtools variation 266146 266146 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193251.1 samtools variation 347555 347555 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 52 ; known ; N/A GL193251.1 samtools variation 347824 347824 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; N/A GL193251.1 samtools variation 347910 347910 . . . alleles " A C"; frequencies " 0.421052631578947 0.578947368421053"; depth 38 ; known ; N/A GL193251.1 samtools variation 348745 348745 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 48 ; known ; N/A GL193251.1 samtools variation 348869 348869 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193251.1 samtools variation 350419 350419 . . . alleles " G T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193251.1 samtools variation 350428 350428 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193251.1 samtools variation 353185 353185 . . . alleles " C A"; frequencies " 0.557823129251701 0.442176870748299"; depth 147 ; known ; N/A GL193251.1 samtools variation 353685 353685 . . . alleles " C T"; frequencies " 0.774647887323944 0.225352112676056"; depth 142 ; unknown ; N/A GL193251.1 samtools variation 387923 387923 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL193251.1 samtools variation 398401 398401 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193251.1 samtools variation 398521 398521 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193251.1 samtools variation 412605 412605 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193251.1 samtools variation 422100 422100 . . . alleles " G T"; frequencies " 0.22093023255814 0.779069767441861"; depth 86 ; known ; non-synonymous GL193251.1 samtools variation 439636 439636 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 63 ; known ; synonymous GL193251.1 samtools variation 457314 457314 . . . alleles " C T"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL193251.1 samtools variation 574642 574642 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193251.1 samtools variation 574957 574957 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 40 ; unknown ; N/A GL193251.1 samtools variation 574974 574974 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 45 ; known ; N/A GL193251.1 samtools variation 576259 576259 . . . alleles " T C"; frequencies " 0.404761904761905 0.595238095238095"; depth 42 ; unknown ; N/A GL193251.1 samtools variation 579104 579104 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 45 ; unknown ; synonymous GL193251.1 samtools variation 581035 581035 . . . alleles " G T"; frequencies " 0.208333333333333 0.791666666666667"; depth 48 ; known ; non-synonymous GL193251.1 samtools variation 581048 581048 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 48 ; known ; synonymous GL193251.1 samtools variation 587282 587282 . . . alleles " A G"; frequencies " 0.264705882352941 0.735294117647059"; depth 34 ; unknown ; synonymous GL193251.1 samtools variation 588883 588883 . . . alleles " C T"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; known ; synonymous GL193251.1 samtools variation 590933 590933 . . . alleles " G C"; frequencies " 0.72 0.28"; depth 50 ; known ; non-synonymous GL193251.1 samtools variation 590967 590967 . . . alleles " A T"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; known ; non-synonymous GL193251.1 samtools variation 590995 590995 . . . alleles " T C"; frequencies " 0.627906976744186 0.372093023255814"; depth 43 ; unknown ; non-synonymous GL193252.1 samtools variation 1047 1047 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193252.1 samtools variation 83275 83275 . . . alleles " G T"; frequencies " 0.40625 0.59375"; depth 32 ; unknown ; N/A GL193252.1 samtools variation 327678 327678 . . . alleles " C T"; frequencies " 0.781818181818182 0.218181818181818"; depth 55 ; unknown ; N/A GL193252.1 samtools variation 327903 327903 . . . alleles " T C"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; N/A GL193252.1 samtools variation 327915 327915 . . . alleles " G C"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL193252.1 samtools variation 328349 328349 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193252.1 samtools variation 329604 329604 . . . alleles " A G"; frequencies " 0.689473684210526 0.310526315789474"; depth 190 ; unknown ; N/A GL193252.1 samtools variation 354065 354065 . . . alleles " G A"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL193252.1 samtools variation 354099 354099 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL193252.1 samtools variation 354662 354662 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193252.1 samtools variation 479903 479903 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193252.1 samtools variation 504261 504261 . . . alleles " G A"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; synonymous GL193252.1 samtools variation 509167 509167 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193252.1 samtools variation 734194 734194 . . . alleles " T A"; frequencies " 0.441860465116279 0.558139534883721"; depth 43 ; unknown ; N/A GL193254.1 samtools variation 97828 97828 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193254.1 samtools variation 97860 97860 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL193254.1 samtools variation 112306 112306 . . . alleles " T G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL193254.1 samtools variation 118749 118749 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193254.1 samtools variation 137592 137592 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193254.1 samtools variation 172924 172924 . . . alleles " C T"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; unknown ; synonymous GL193254.1 samtools variation 282329 282329 . . . alleles " C T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; synonymous GL193254.1 samtools variation 282428 282428 . . . alleles " A C"; frequencies " 0.558139534883721 0.441860465116279"; depth 43 ; unknown ; synonymous GL193254.1 samtools variation 289714 289714 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 40 ; unknown ; N/A GL193256.1 samtools variation 7714 7714 . . . alleles " A T"; frequencies " 0.452991452991453 0.547008547008547"; depth 117 ; known ; non-synonymous GL193256.1 samtools variation 21588 21588 . . . alleles " T C"; frequencies " 0.490384615384615 0.509615384615385"; depth 104 ; unknown ; N/A GL193256.1 samtools variation 21717 21717 . . . alleles " G T"; frequencies " 0.435294117647059 0.564705882352941"; depth 85 ; known ; N/A GL193256.1 samtools variation 21864 21864 . . . alleles " G T"; frequencies " 0.38 0.62"; depth 50 ; known ; N/A GL193256.1 samtools variation 22089 22089 . . . alleles " C T"; frequencies " 0.27027027027027 0.72972972972973"; depth 37 ; known ; N/A GL193256.1 samtools variation 133608 133608 . . . alleles " G C"; frequencies " 0.504 0.496"; depth 125 ; unknown ; N/A GL193256.1 samtools variation 280664 280664 . . . alleles " G A"; frequencies " 0.776119402985075 0.223880597014925"; depth 67 ; unknown ; non-synonymous GL193256.1 samtools variation 289589 289589 . . . alleles " C G"; frequencies " 0.754098360655738 0.245901639344262"; depth 61 ; unknown ; synonymous GL193256.1 samtools variation 517366 517366 . . . alleles " A C"; frequencies " 0.658333333333333 0.341666666666667"; depth 120 ; unknown ; N/A GL193258.1 samtools variation 158414 158414 . . . alleles " T C"; frequencies " 0.594594594594595 0.405405405405405"; depth 37 ; unknown ; synonymous GL193258.1 samtools variation 272769 272769 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193258.1 samtools variation 578106 578106 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; N/A GL193258.1 samtools variation 579371 579371 . . . alleles " G A"; frequencies " 0.552795031055901 0.447204968944099"; depth 161 ; known ; N/A GL193258.1 samtools variation 593900 593900 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; known ; N/A GL193258.1 samtools variation 594149 594149 . . . alleles " C A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193258.1 samtools variation 611852 611852 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193258.1 samtools variation 612916 612916 . . . alleles " A C"; frequencies " 0.341176470588235 0.658823529411765"; depth 85 ; known ; N/A GL193258.1 samtools variation 614943 614943 . . . alleles " T C"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; known ; N/A GL193258.1 samtools variation 615040 615040 . . . alleles " A G"; frequencies " 0.255813953488372 0.744186046511628"; depth 86 ; known ; non-synonymous GL193258.1 samtools variation 620881 620881 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; known ; N/A GL193258.1 samtools variation 621214 621214 . . . alleles " C T"; frequencies " 0.797169811320755 0.202830188679245"; depth 212 ; known ; non-synonymous GL193258.1 samtools variation 622257 622257 . . . alleles " C T"; frequencies " 0.728155339805825 0.271844660194175"; depth 103 ; known ; synonymous GL193258.1 samtools variation 622326 622326 . . . alleles " T C"; frequencies " 0.252427184466019 0.747572815533981"; depth 103 ; known ; synonymous GL193258.1 samtools variation 626298 626298 . . . alleles " T C"; frequencies " 0.766917293233083 0.233082706766917"; depth 133 ; known ; synonymous GL193258.1 samtools variation 627186 627186 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193258.1 samtools variation 627527 627527 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193258.1 samtools variation 633109 633109 . . . alleles " G T"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL193258.1 samtools variation 635754 635754 . . . alleles " G A"; frequencies " 0.777385159010601 0.222614840989399"; depth 283 ; unknown ; N/A GL193258.1 samtools variation 636223 636223 . . . alleles " C T"; frequencies " 0.778443113772455 0.221556886227545"; depth 167 ; unknown ; N/A GL193258.1 samtools variation 637296 637296 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; N/A GL193258.1 samtools variation 720122 720122 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193258.1 samtools variation 720617 720617 . . . alleles " G A"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; non-synonymous GL193258.1 samtools variation 721962 721962 . . . alleles " C A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193258.1 samtools variation 723334 723334 . . . alleles " T C"; frequencies " 0.660377358490566 0.339622641509434"; depth 53 ; unknown ; synonymous GL193258.1 samtools variation 729299 729299 . . . alleles " G A"; frequencies " 0.78494623655914 0.21505376344086"; depth 93 ; unknown ; synonymous GL193258.1 samtools variation 738807 738807 . . . alleles " G A"; frequencies " 0.663366336633663 0.336633663366337"; depth 101 ; unknown ; non-synonymous GL193258.1 samtools variation 739248 739248 . . . alleles " A G"; frequencies " 0.732558139534884 0.267441860465116"; depth 86 ; unknown ; non-synonymous GL193258.1 samtools variation 781615 781615 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; synonymous GL193258.1 samtools variation 787107 787107 . . . alleles " G A"; frequencies " 0.472222222222222 0.527777777777778"; depth 36 ; unknown ; N/A GL193258.1 samtools variation 787137 787137 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL193258.1 samtools variation 788817 788817 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193258.1 samtools variation 789084 789084 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL193259.1 samtools variation 270591 270591 . . . alleles " T A"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL193259.1 samtools variation 487042 487042 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 69 ; unknown ; synonymous GL193259.1 samtools variation 487117 487117 . . . alleles " C T"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; synonymous GL193259.1 samtools variation 488405 488405 . . . alleles " T C"; frequencies " 0.315068493150685 0.684931506849315"; depth 73 ; unknown ; non-synonymous GL193259.1 samtools variation 490944 490944 . . . alleles " T C"; frequencies " 0.378048780487805 0.621951219512195"; depth 82 ; unknown ; synonymous GL193259.1 samtools variation 492145 492145 . . . alleles " C G"; frequencies " 0.48780487804878 0.51219512195122"; depth 41 ; unknown ; synonymous GL193259.1 samtools variation 492160 492160 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 36 ; unknown ; synonymous GL193259.1 samtools variation 522927 522927 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193259.1 samtools variation 523720 523720 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193259.1 samtools variation 523800 523800 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 25 ; known ; N/A GL193259.1 samtools variation 524233 524233 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 39 ; known ; N/A GL193259.1 samtools variation 524721 524721 . . . alleles " C T"; frequencies " 0.745454545454545 0.254545454545455"; depth 55 ; unknown ; N/A GL193259.1 samtools variation 525298 525298 . . . alleles " T C"; frequencies " 0.779816513761468 0.220183486238532"; depth 109 ; unknown ; N/A GL193259.1 samtools variation 525871 525871 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 55 ; unknown ; N/A GL193259.1 samtools variation 553541 553541 . . . alleles " G A"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; known ; non-synonymous GL193259.1 samtools variation 599380 599380 . . . alleles " C T"; frequencies " 0.204545454545455 0.795454545454545"; depth 44 ; known ; N/A GL193259.1 samtools variation 599471 599471 . . . alleles " A G"; frequencies " 0.261904761904762 0.738095238095238"; depth 42 ; known ; N/A GL193260.1 samtools variation 502574 502574 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; N/A GL193260.1 samtools variation 524107 524107 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193260.1 samtools variation 561528 561528 . . . alleles " T C"; frequencies " 0.568965517241379 0.431034482758621"; depth 58 ; unknown ; N/A GL193260.1 samtools variation 575158 575158 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193260.1 samtools variation 752463 752463 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193260.1 samtools variation 759108 759108 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193260.1 samtools variation 760601 760601 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 63 ; known ; N/A GL193260.1 samtools variation 761626 761626 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193260.1 samtools variation 762105 762105 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL193260.1 samtools variation 763510 763510 . . . alleles " C A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193260.1 samtools variation 763522 763522 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193260.1 samtools variation 764703 764703 . . . alleles " C T"; frequencies " 0.785103785103785 0.214896214896215"; depth 819 ; unknown ; synonymous GL193260.1 samtools variation 765864 765864 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL193260.1 samtools variation 804657 804657 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193262.1 samtools variation 252749 252749 . . . alleles " C A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193262.1 samtools variation 253213 253213 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193262.1 samtools variation 253522 253522 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193262.1 samtools variation 254417 254417 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193262.1 samtools variation 282258 282258 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; non-synonymous GL193262.1 samtools variation 282371 282371 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; synonymous GL193262.1 samtools variation 763884 763884 . . . alleles " G A"; frequencies " 0.627388535031847 0.372611464968153"; depth 314 ; known ; synonymous GL193262.1 samtools variation 785619 785619 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193262.1 samtools variation 788227 788227 . . . alleles " T C"; frequencies " 0.658163265306122 0.341836734693878"; depth 196 ; unknown ; N/A GL193263.1 samtools variation 1936 1936 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 288 ; known ; N/A GL193263.1 samtools variation 2477 2477 . . . alleles " G A"; frequencies " 0.539915966386555 0.460084033613445"; depth 476 ; known ; N/A GL193263.1 samtools variation 2642 2642 . . . alleles " C G"; frequencies " 0.561822125813449 0.438177874186551"; depth 461 ; known ; N/A GL193263.1 samtools variation 6871 6871 . . . alleles " T A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL193263.1 samtools variation 7906 7906 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL193263.1 samtools variation 8558 8558 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193263.1 samtools variation 30321 30321 . . . alleles " G T"; frequencies " 0.725 0.275"; depth 40 ; unknown ; N/A GL193263.1 samtools variation 30393 30393 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL193263.1 samtools variation 30463 30463 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; known ; N/A GL193263.1 samtools variation 46300 46300 . . . alleles " A C"; frequencies " 0.3 0.7"; depth 30 ; known ; N/A GL193263.1 samtools variation 53515 53515 . . . alleles " C G"; frequencies " 0.646341463414634 0.353658536585366"; depth 82 ; known ; N/A GL193263.1 samtools variation 53923 53923 . . . alleles " T C"; frequencies " 0.784172661870504 0.215827338129496"; depth 278 ; unknown ; N/A GL193263.1 samtools variation 78371 78371 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 85 ; known ; N/A GL193263.1 samtools variation 80849 80849 . . . alleles " T A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193263.1 samtools variation 80991 80991 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL193263.1 samtools variation 81017 81017 . . . alleles " T G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193263.1 samtools variation 81073 81073 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193263.1 samtools variation 88853 88853 . . . alleles " A C"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; known ; N/A GL193263.1 samtools variation 99145 99145 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193263.1 samtools variation 99533 99533 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; known ; non-synonymous GL193263.1 samtools variation 105727 105727 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193263.1 samtools variation 112071 112071 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL193263.1 samtools variation 112815 112815 . . . alleles " C T"; frequencies " 0.506024096385542 0.493975903614458"; depth 83 ; known ; N/A GL193263.1 samtools variation 114516 114516 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL193263.1 samtools variation 119738 119738 . . . alleles " A C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193263.1 samtools variation 121522 121522 . . . alleles " G A"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; unknown ; N/A GL193263.1 samtools variation 124148 124148 . . . alleles " T C"; frequencies " 0.754385964912281 0.245614035087719"; depth 57 ; unknown ; N/A GL193263.1 samtools variation 124346 124346 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193263.1 samtools variation 127573 127573 . . . alleles " C A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL193263.1 samtools variation 127861 127861 . . . alleles " A T"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL193263.1 samtools variation 142166 142166 . . . alleles " C T"; frequencies " 0.620087336244541 0.379912663755459"; depth 1374 ; unknown ; synonymous GL193263.1 samtools variation 148769 148769 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 68 ; unknown ; N/A GL193263.1 samtools variation 158124 158124 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193263.1 samtools variation 202168 202168 . . . alleles " T A"; frequencies " 0.532710280373832 0.467289719626168"; depth 107 ; unknown ; N/A GL193263.1 samtools variation 208687 208687 . . . alleles " C A"; frequencies " 0.633720930232558 0.366279069767442"; depth 172 ; unknown ; N/A GL193263.1 samtools variation 210418 210418 . . . alleles " G A"; frequencies " 0.21875 0.765625"; depth 64 ; known ; N/A GL193263.1 samtools variation 210878 210878 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 35 ; known ; N/A GL193263.1 samtools variation 212012 212012 . . . alleles " T C"; frequencies " 0.796610169491525 0.203389830508475"; depth 59 ; unknown ; N/A GL193263.1 samtools variation 215211 215211 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 25 ; known ; N/A GL193263.1 samtools variation 222040 222040 . . . alleles " A G"; frequencies " 0.787104622871046 0.212895377128954"; depth 822 ; known ; N/A GL193263.1 samtools variation 222222 222222 . . . alleles " T C"; frequencies " 0.492783505154639 0.507216494845361"; depth 485 ; known ; N/A GL193263.1 samtools variation 222516 222516 . . . alleles " A G"; frequencies " 0.727941176470588 0.272058823529412"; depth 136 ; known ; N/A GL193263.1 samtools variation 352080 352080 . . . alleles " A T"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; known ; synonymous GL193263.1 samtools variation 360028 360028 . . . alleles " G T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193263.1 samtools variation 365340 365340 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL193263.1 samtools variation 365810 365810 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL193263.1 samtools variation 366090 366090 . . . alleles " T C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193263.1 samtools variation 367861 367861 . . . alleles " C A"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL193263.1 samtools variation 368529 368529 . . . alleles " C G"; frequencies " 0.337662337662338 0.662337662337662"; depth 77 ; known ; N/A GL193263.1 samtools variation 370568 370568 . . . alleles " A T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193263.1 samtools variation 371975 371975 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL193263.1 samtools variation 385546 385546 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL193263.1 samtools variation 386137 386137 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193263.1 samtools variation 388375 388375 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193263.1 samtools variation 389773 389773 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193263.1 samtools variation 396287 396287 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193263.1 samtools variation 396289 396289 . . . alleles " A C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193263.1 samtools variation 399424 399424 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193263.1 samtools variation 421431 421431 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193263.1 samtools variation 424659 424659 . . . alleles " A C"; frequencies " 0.43956043956044 0.56043956043956"; depth 91 ; unknown ; non-synonymous GL193263.1 samtools variation 434651 434651 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL193263.1 samtools variation 456344 456344 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193263.1 samtools variation 477516 477516 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193263.1 samtools variation 479750 479750 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193263.1 samtools variation 481633 481633 . . . alleles " C A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193263.1 samtools variation 497097 497097 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193263.1 samtools variation 497897 497897 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193263.1 samtools variation 501634 501634 . . . alleles " C G"; frequencies " 0.786516853932584 0.213483146067416"; depth 89 ; unknown ; N/A GL193263.1 samtools variation 502681 502681 . . . alleles " T C"; frequencies " 0.685714285714286 0.314285714285714"; depth 105 ; unknown ; N/A GL193263.1 samtools variation 503406 503406 . . . alleles " T G"; frequencies " 0.505050505050505 0.494949494949495"; depth 99 ; known ; N/A GL193263.1 samtools variation 515290 515290 . . . alleles " C T"; frequencies " 0.550161812297735 0.449838187702265"; depth 618 ; known ; N/A GL193263.1 samtools variation 585055 585055 . . . alleles " T C"; frequencies " 0.517857142857143 0.482142857142857"; depth 56 ; known ; non-synonymous GL193265.1 samtools variation 182692 182692 . . . alleles " T C"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; unknown ; N/A GL193265.1 samtools variation 192035 192035 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL193265.1 samtools variation 195773 195773 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL193265.1 samtools variation 212055 212055 . . . alleles " C T"; frequencies " 0.717356687898089 0.282643312101911"; depth 1256 ; unknown ; N/A GL193265.1 samtools variation 213933 213933 . . . alleles " T G"; frequencies " 0.380952380952381 0.619047619047619"; depth 42 ; unknown ; N/A GL193265.1 samtools variation 214020 214020 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193265.1 samtools variation 214835 214835 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193265.1 samtools variation 222432 222432 . . . alleles " T A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193265.1 samtools variation 222732 222732 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193265.1 samtools variation 223475 223475 . . . alleles " T C"; frequencies " 0.328947368421053 0.671052631578947"; depth 76 ; known ; N/A GL193265.1 samtools variation 225279 225279 . . . alleles " G C"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; N/A GL193265.1 samtools variation 226245 226245 . . . alleles " G A"; frequencies " 0.756643356643357 0.243356643356643"; depth 715 ; unknown ; synonymous GL193265.1 samtools variation 227701 227701 . . . alleles " G A"; frequencies " 0.734989648033126 0.265010351966874"; depth 483 ; unknown ; synonymous GL193265.1 samtools variation 232219 232219 . . . alleles " G C"; frequencies " 0.356041131105398 0.643958868894602"; depth 778 ; unknown ; synonymous GL193265.1 samtools variation 238859 238859 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193265.1 samtools variation 240732 240732 . . . alleles " G T"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL193265.1 samtools variation 240740 240740 . . . alleles " T C"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; unknown ; N/A GL193265.1 samtools variation 256299 256299 . . . alleles " C T"; frequencies " 0.705263157894737 0.294736842105263"; depth 190 ; unknown ; non-synonymous GL193265.1 samtools variation 428665 428665 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193265.1 samtools variation 428949 428949 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 108 ; unknown ; N/A GL193265.1 samtools variation 432547 432547 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193265.1 samtools variation 442648 442648 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193265.1 samtools variation 442823 442823 . . . alleles " C A"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193265.1 samtools variation 443453 443453 . . . alleles " G A"; frequencies " 0.579601990049751 0.420398009950249"; depth 402 ; known ; synonymous GL193265.1 samtools variation 443578 443578 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193265.1 samtools variation 443591 443591 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193265.1 samtools variation 447986 447986 . . . alleles " C T"; frequencies " 0.245283018867925 0.754716981132076"; depth 106 ; unknown ; synonymous GL193265.1 samtools variation 448012 448012 . . . alleles " G A"; frequencies " 0.222222222222222 0.777777777777778"; depth 108 ; known ; synonymous GL193265.1 samtools variation 449277 449277 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193265.1 samtools variation 513365 513365 . . . alleles " G A"; frequencies " 0.568181818181818 0.431818181818182"; depth 44 ; unknown ; N/A GL193265.1 samtools variation 514234 514234 . . . alleles " A C"; frequencies " 0.392405063291139 0.607594936708861"; depth 79 ; known ; N/A GL193265.1 samtools variation 514691 514691 . . . alleles " T C"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; N/A GL193265.1 samtools variation 514695 514695 . . . alleles " T C"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; N/A GL193265.1 samtools variation 515195 515195 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193265.1 samtools variation 515978 515978 . . . alleles " G A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193265.1 samtools variation 516329 516329 . . . alleles " A G"; frequencies " 0.743016759776536 0.256983240223464"; depth 179 ; unknown ; N/A GL193265.1 samtools variation 516350 516350 . . . alleles " C T"; frequencies " 0.748538011695906 0.251461988304094"; depth 171 ; unknown ; N/A GL193265.1 samtools variation 516449 516449 . . . alleles " T C"; frequencies " 0.747368421052632 0.252631578947368"; depth 95 ; unknown ; N/A GL193265.1 samtools variation 516991 516991 . . . alleles " G A"; frequencies " 0.780542986425339 0.219457013574661"; depth 442 ; unknown ; N/A GL193265.1 samtools variation 517184 517184 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193265.1 samtools variation 517275 517275 . . . alleles " C T"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; unknown ; N/A GL193265.1 samtools variation 517297 517297 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 64 ; unknown ; N/A GL193265.1 samtools variation 518429 518429 . . . alleles " G C"; frequencies " 0.593193717277487 0.406806282722513"; depth 1910 ; unknown ; N/A GL193265.1 samtools variation 518470 518470 . . . alleles " T G"; frequencies " 0.577812018489985 0.422187981510015"; depth 1947 ; unknown ; N/A GL193265.1 samtools variation 518612 518612 . . . alleles " A G"; frequencies " 0.559808612440191 0.440191387559809"; depth 1045 ; unknown ; N/A GL193265.1 samtools variation 519026 519026 . . . alleles " A G"; frequencies " 0.605304212168487 0.394695787831513"; depth 1282 ; unknown ; N/A GL193265.1 samtools variation 519071 519071 . . . alleles " G C"; frequencies " 0.590892531876138 0.408743169398907"; depth 2745 ; unknown ; N/A GL193265.1 samtools variation 519571 519571 . . . alleles " T G"; frequencies " 0.550144927536232 0.449275362318841"; depth 1725 ; unknown ; N/A GL193265.1 samtools variation 519743 519743 . . . alleles " A C"; frequencies " 0.417821782178218 0.581188118811881"; depth 1010 ; unknown ; N/A GL193265.1 samtools variation 519806 519806 . . . alleles " T G"; frequencies " 0.446732318710833 0.553267681289167"; depth 1117 ; unknown ; N/A GL193265.1 samtools variation 519989 519989 . . . alleles " T C"; frequencies " 0.404334828101644 0.595665171898356"; depth 1338 ; unknown ; N/A GL193265.1 samtools variation 520152 520152 . . . alleles " A G"; frequencies " 0.459940652818991 0.540059347181009"; depth 337 ; unknown ; N/A GL193265.1 samtools variation 521022 521022 . . . alleles " C T"; frequencies " 0.711111111111111 0.288888888888889"; depth 90 ; unknown ; N/A GL193265.1 samtools variation 521078 521078 . . . alleles " A C"; frequencies " 0.695121951219512 0.304878048780488"; depth 82 ; unknown ; N/A GL193265.1 samtools variation 521838 521838 . . . alleles " G T"; frequencies " 0.736842105263158 0.263157894736842"; depth 76 ; unknown ; N/A GL193265.1 samtools variation 522093 522093 . . . alleles " A G"; frequencies " 0.69047619047619 0.30952380952381"; depth 210 ; unknown ; N/A GL193265.1 samtools variation 522394 522394 . . . alleles " C T"; frequencies " 0.703296703296703 0.296703296703297"; depth 91 ; unknown ; N/A GL193265.1 samtools variation 523240 523240 . . . alleles " G A"; frequencies " 0.470319634703196 0.529680365296804"; depth 219 ; known ; N/A GL193265.1 samtools variation 525055 525055 . . . alleles " A C"; frequencies " 0.732352941176471 0.267647058823529"; depth 340 ; unknown ; N/A GL193265.1 samtools variation 534128 534128 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193265.1 samtools variation 538036 538036 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL193265.1 samtools variation 539555 539555 . . . alleles " T C"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL193265.1 samtools variation 541769 541769 . . . alleles " G C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL193265.1 samtools variation 542064 542064 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193265.1 samtools variation 542078 542078 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL193265.1 samtools variation 544752 544752 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193265.1 samtools variation 544753 544753 . . . alleles " C G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193265.1 samtools variation 545569 545569 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193265.1 samtools variation 545570 545570 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193265.1 samtools variation 545691 545691 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193265.1 samtools variation 545839 545839 . . . alleles " G A"; frequencies " 0.35 0.65"; depth 40 ; known ; N/A GL193265.1 samtools variation 545865 545865 . . . alleles " C T"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; unknown ; N/A GL193265.1 samtools variation 547277 547277 . . . alleles " T C"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; known ; N/A GL193265.1 samtools variation 556431 556431 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193265.1 samtools variation 568192 568192 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL193265.1 samtools variation 586420 586420 . . . alleles " C T"; frequencies " 0.641509433962264 0.358490566037736"; depth 53 ; unknown ; N/A GL193265.1 samtools variation 586884 586884 . . . alleles " T G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL193265.1 samtools variation 641735 641735 . . . alleles " A C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193266.1 samtools variation 647100 647100 . . . alleles " A G"; frequencies " 0.287878787878788 0.712121212121212"; depth 66 ; unknown ; N/A GL193267.1 samtools variation 771 771 . . . alleles " A T"; frequencies " 0.551020408163265 0.448979591836735"; depth 49 ; known ; N/A GL193267.1 samtools variation 17902 17902 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; synonymous GL193267.1 samtools variation 317167 317167 . . . alleles " A G"; frequencies " 0.241379310344828 0.758620689655172"; depth 87 ; known ; synonymous GL193267.1 samtools variation 321092 321092 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 28 ; known ; synonymous GL193267.1 samtools variation 337629 337629 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 152 ; unknown ; N/A GL193267.1 samtools variation 340043 340043 . . . alleles " A G"; frequencies " 0.56 0.44"; depth 25 ; known ; N/A GL193267.1 samtools variation 347104 347104 . . . alleles " A C"; frequencies " 0.565217391304348 0.434782608695652"; depth 92 ; known ; synonymous GL193267.1 samtools variation 351565 351565 . . . alleles " C T"; frequencies " 0.670391061452514 0.329608938547486"; depth 179 ; unknown ; synonymous GL193267.1 samtools variation 372196 372196 . . . alleles " G A"; frequencies " 0.426229508196721 0.573770491803279"; depth 305 ; known ; N/A GL193267.1 samtools variation 372653 372653 . . . alleles " G A"; frequencies " 0.317152103559871 0.682847896440129"; depth 309 ; known ; N/A GL193267.1 samtools variation 379321 379321 . . . alleles " T C"; frequencies " 0.761904761904762 0.238095238095238"; depth 105 ; unknown ; N/A GL193267.1 samtools variation 381852 381852 . . . alleles " T C"; frequencies " 0.676328502415459 0.323671497584541"; depth 414 ; unknown ; synonymous GL193267.1 samtools variation 383477 383477 . . . alleles " G C"; frequencies " 0.682110682110682 0.317889317889318"; depth 777 ; unknown ; non-synonymous GL193267.1 samtools variation 385677 385677 . . . alleles " C T"; frequencies " 0.722826086956522 0.277173913043478"; depth 184 ; unknown ; non-synonymous GL193267.1 samtools variation 385980 385980 . . . alleles " C G"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL193267.1 samtools variation 386092 386092 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 320 ; known ; N/A GL193267.1 samtools variation 389297 389297 . . . alleles " C A"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL193267.1 samtools variation 395599 395599 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 25 ; known ; synonymous GL193267.1 samtools variation 404221 404221 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL193267.1 samtools variation 404316 404316 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL193267.1 samtools variation 405377 405377 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 65 ; known ; N/A GL193267.1 samtools variation 408593 408593 . . . alleles " C T"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; known ; N/A GL193267.1 samtools variation 426188 426188 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193267.1 samtools variation 427462 427462 . . . alleles " G T"; frequencies " 0.757575757575758 0.242424242424242"; depth 66 ; unknown ; N/A GL193267.1 samtools variation 427723 427723 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 77 ; unknown ; N/A GL193267.1 samtools variation 427781 427781 . . . alleles " G A"; frequencies " 0.576470588235294 0.423529411764706"; depth 85 ; unknown ; N/A GL193267.1 samtools variation 429816 429816 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193267.1 samtools variation 430114 430114 . . . alleles " G A"; frequencies " 0.393617021276596 0.606382978723404"; depth 94 ; unknown ; synonymous GL193267.1 samtools variation 434162 434162 . . . alleles " G A"; frequencies " 0.732558139534884 0.267441860465116"; depth 86 ; known ; synonymous GL193267.1 samtools variation 435729 435729 . . . alleles " A T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193267.1 samtools variation 435883 435883 . . . alleles " A G"; frequencies " 0.76271186440678 0.23728813559322"; depth 59 ; unknown ; N/A GL193267.1 samtools variation 440581 440581 . . . alleles " T C"; frequencies " 0.356435643564356 0.643564356435644"; depth 303 ; known ; synonymous GL193267.1 samtools variation 443659 443659 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193267.1 samtools variation 444516 444516 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193267.1 samtools variation 447430 447430 . . . alleles " G A"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; known ; N/A GL193267.1 samtools variation 447472 447472 . . . alleles " C T"; frequencies " 0.456140350877193 0.543859649122807"; depth 114 ; known ; N/A GL193267.1 samtools variation 447514 447514 . . . alleles " C T"; frequencies " 0.785185185185185 0.214814814814815"; depth 135 ; unknown ; N/A GL193267.1 samtools variation 447758 447758 . . . alleles " T C"; frequencies " 0.56 0.44"; depth 50 ; known ; N/A GL193267.1 samtools variation 447833 447833 . . . alleles " A G"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; N/A GL193267.1 samtools variation 447865 447865 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193267.1 samtools variation 453760 453760 . . . alleles " C G"; frequencies " 0.637931034482759 0.362068965517241"; depth 58 ; unknown ; N/A GL193267.1 samtools variation 456008 456008 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 38 ; unknown ; N/A GL193267.1 samtools variation 456079 456079 . . . alleles " C T"; frequencies " 0.537037037037037 0.462962962962963"; depth 54 ; unknown ; N/A GL193267.1 samtools variation 457685 457685 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193267.1 samtools variation 458486 458486 . . . alleles " G A"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; N/A GL193267.1 samtools variation 458545 458545 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 32 ; unknown ; N/A GL193267.1 samtools variation 459401 459401 . . . alleles " A G"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; N/A GL193267.1 samtools variation 459424 459424 . . . alleles " A T"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; N/A GL193267.1 samtools variation 459464 459464 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193267.1 samtools variation 459630 459630 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL193267.1 samtools variation 459805 459805 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193267.1 samtools variation 461830 461830 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL193267.1 samtools variation 462023 462023 . . . alleles " G T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193267.1 samtools variation 462152 462152 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193267.1 samtools variation 462934 462934 . . . alleles " C G"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; unknown ; N/A GL193267.1 samtools variation 463408 463408 . . . alleles " C T"; frequencies " 0.241379310344828 0.758620689655172"; depth 203 ; unknown ; synonymous GL193267.1 samtools variation 463810 463810 . . . alleles " T C"; frequencies " 0.531413612565445 0.468586387434555"; depth 382 ; unknown ; N/A GL193267.1 samtools variation 483453 483453 . . . alleles " A T"; frequencies " 0.638418079096045 0.350282485875706"; depth 177 ; known ; non-synonymous GL193267.1 samtools variation 483526 483526 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 42 ; unknown ; synonymous GL193267.1 samtools variation 483701 483701 . . . alleles " G A"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; unknown ; N/A GL193267.1 samtools variation 507058 507058 . . . alleles " G A"; frequencies " 0.709497206703911 0.290502793296089"; depth 179 ; unknown ; N/A GL193267.1 samtools variation 515959 515959 . . . alleles " C T"; frequencies " 0.351351351351351 0.648648648648649"; depth 37 ; unknown ; N/A GL193267.1 samtools variation 518740 518740 . . . alleles " G T"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL193267.1 samtools variation 524917 524917 . . . alleles " G A"; frequencies " 0.726190476190476 0.273809523809524"; depth 168 ; unknown ; N/A GL193267.1 samtools variation 546266 546266 . . . alleles " C G"; frequencies " 0.749407863571767 0.250592136428233"; depth 2111 ; unknown ; non-synonymous GL193267.1 samtools variation 578790 578790 . . . alleles " C T"; frequencies " 0.524054982817869 0.475945017182131"; depth 582 ; unknown ; synonymous GL193267.1 samtools variation 583648 583648 . . . alleles " G T"; frequencies " 0.444672131147541 0.422131147540984"; depth 488 ; unknown ; non-synonymous GL193267.1 samtools variation 584419 584419 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 110 ; unknown ; synonymous GL193267.1 samtools variation 585463 585463 . . . alleles " A G"; frequencies " 0.606741573033708 0.393258426966292"; depth 356 ; unknown ; synonymous GL193267.1 samtools variation 587809 587809 . . . alleles " A G"; frequencies " 0.625242718446602 0.372815533980583"; depth 515 ; unknown ; synonymous GL193267.1 samtools variation 588203 588203 . . . alleles " G A"; frequencies " 0.726277372262774 0.273722627737226"; depth 548 ; unknown ; N/A GL193267.1 samtools variation 588428 588428 . . . alleles " G A"; frequencies " 0.668161434977579 0.331838565022422"; depth 223 ; unknown ; non-synonymous GL193267.1 samtools variation 591016 591016 . . . alleles " G A"; frequencies " 0.637010676156584 0.362989323843416"; depth 843 ; unknown ; synonymous GL193267.1 samtools variation 591041 591041 . . . alleles " G A"; frequencies " 0.739080459770115 0.260919540229885"; depth 870 ; unknown ; non-synonymous GL193267.1 samtools variation 593093 593093 . . . alleles " G A"; frequencies " 0.566 0.434"; depth 500 ; unknown ; non-synonymous GL193267.1 samtools variation 593347 593347 . . . alleles " C T"; frequencies " 0.657534246575342 0.342465753424658"; depth 803 ; unknown ; synonymous GL193267.1 samtools variation 711455 711455 . . . alleles " A G"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; synonymous GL193269.1 samtools variation 507585 507585 . . . alleles " G A"; frequencies " 0.31390134529148 0.68609865470852"; depth 223 ; unknown ; N/A GL193269.1 samtools variation 507786 507786 . . . alleles " C T"; frequencies " 0.494117647058824 0.505882352941176"; depth 85 ; unknown ; N/A GL193269.1 samtools variation 580946 580946 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193269.1 samtools variation 581521 581521 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193269.1 samtools variation 617736 617736 . . . alleles " T G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193269.1 samtools variation 617761 617761 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193269.1 samtools variation 773031 773031 . . . alleles " T G"; frequencies " 0.767045454545455 0.232954545454545"; depth 176 ; unknown ; non-synonymous GL193270.1 samtools variation 130211 130211 . . . alleles " G A"; frequencies " 0.719354838709677 0.280645161290323"; depth 310 ; unknown ; N/A GL193270.1 samtools variation 137698 137698 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193270.1 samtools variation 137699 137699 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193270.1 samtools variation 146086 146086 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 204 ; known ; N/A GL193270.1 samtools variation 147136 147136 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193270.1 samtools variation 173547 173547 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 30 ; known ; N/A GL193270.1 samtools variation 420645 420645 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193270.1 samtools variation 447799 447799 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193270.1 samtools variation 448234 448234 . . . alleles " A T"; frequencies " 0.417721518987342 0.582278481012658"; depth 79 ; known ; synonymous GL193270.1 samtools variation 448802 448802 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; non-synonymous GL193270.1 samtools variation 449396 449396 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL193270.1 samtools variation 457279 457279 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL193270.1 samtools variation 491893 491893 . . . alleles " C T"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL193272.1 samtools variation 244648 244648 . . . alleles " G T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193272.1 samtools variation 401594 401594 . . . alleles " C T"; frequencies " 0.525423728813559 0.474576271186441"; depth 177 ; unknown ; N/A GL193272.1 samtools variation 419816 419816 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193273.1 samtools variation 108394 108394 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193273.1 samtools variation 220399 220399 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193273.1 samtools variation 243725 243725 . . . alleles " T C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193273.1 samtools variation 470788 470788 . . . alleles " G A"; frequencies " 0.796116504854369 0.203883495145631"; depth 103 ; unknown ; non-synonymous GL193274.1 samtools variation 789798 789798 . . . alleles " C T"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL193274.1 samtools variation 790039 790039 . . . alleles " G A"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL193276.1 samtools variation 132037 132037 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 42 ; known ; N/A GL193276.1 samtools variation 132100 132100 . . . alleles " G A"; frequencies " 0.604166666666667 0.395833333333333"; depth 48 ; known ; N/A GL193276.1 samtools variation 132120 132120 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; known ; N/A GL193276.1 samtools variation 132353 132353 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193276.1 samtools variation 132479 132479 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL193276.1 samtools variation 132617 132617 . . . alleles " T C"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; known ; N/A GL193276.1 samtools variation 133793 133793 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193276.1 samtools variation 134031 134031 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL193276.1 samtools variation 134373 134373 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193276.1 samtools variation 134415 134415 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193276.1 samtools variation 134756 134756 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL193276.1 samtools variation 135318 135318 . . . alleles " G C"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; known ; N/A GL193276.1 samtools variation 136619 136619 . . . alleles " G T"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; known ; N/A GL193276.1 samtools variation 136884 136884 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193276.1 samtools variation 136962 136962 . . . alleles " A G"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; known ; N/A GL193276.1 samtools variation 137030 137030 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL193276.1 samtools variation 137449 137449 . . . alleles " G T"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; known ; N/A GL193276.1 samtools variation 137538 137538 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; known ; N/A GL193276.1 samtools variation 138235 138235 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193276.1 samtools variation 138403 138403 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; known ; N/A GL193276.1 samtools variation 138739 138739 . . . alleles " C T"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; known ; N/A GL193276.1 samtools variation 270557 270557 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 50 ; known ; non-synonymous GL193276.1 samtools variation 293843 293843 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 35 ; known ; synonymous GL193276.1 samtools variation 373303 373303 . . . alleles " C T"; frequencies " 0.635135135135135 0.364864864864865"; depth 74 ; unknown ; non-synonymous GL193276.1 samtools variation 373379 373379 . . . alleles " G A"; frequencies " 0.477941176470588 0.522058823529412"; depth 136 ; unknown ; synonymous GL193276.1 samtools variation 386278 386278 . . . alleles " G A"; frequencies " 0.771084337349398 0.228915662650602"; depth 166 ; known ; N/A GL193276.1 samtools variation 396423 396423 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193276.1 samtools variation 440463 440463 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193276.1 samtools variation 446648 446648 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 40 ; unknown ; N/A GL193276.1 samtools variation 752416 752416 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193276.1 samtools variation 753358 753358 . . . alleles " A G"; frequencies " 0.36734693877551 0.63265306122449"; depth 49 ; known ; N/A GL193276.1 samtools variation 767052 767052 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 49 ; unknown ; N/A GL193276.1 samtools variation 767855 767855 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL193277.1 samtools variation 61242 61242 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193277.1 samtools variation 135075 135075 . . . alleles " A G"; frequencies " 0.537142857142857 0.462857142857143"; depth 175 ; unknown ; N/A GL193277.1 samtools variation 378576 378576 . . . alleles " T C"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; unknown ; N/A GL193277.1 samtools variation 379819 379819 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL193277.1 samtools variation 393411 393411 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193277.1 samtools variation 431044 431044 . . . alleles " G A"; frequencies " 0.754098360655738 0.245901639344262"; depth 61 ; unknown ; synonymous GL193277.1 samtools variation 449940 449940 . . . alleles " A G"; frequencies " 0.531914893617021 0.468085106382979"; depth 47 ; unknown ; synonymous GL193277.1 samtools variation 480188 480188 . . . alleles " G T"; frequencies " 0.775 0.225"; depth 40 ; unknown ; non-synonymous GL193277.1 samtools variation 480273 480273 . . . alleles " G T"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; unknown ; non-synonymous GL193277.1 samtools variation 483435 483435 . . . alleles " T A"; frequencies " 0.551020408163265 0.448979591836735"; depth 49 ; unknown ; non-synonymous GL193278.1 samtools variation 517884 517884 . . . alleles " G A"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL193279.1 samtools variation 276952 276952 . . . alleles " C T"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL193279.1 samtools variation 321696 321696 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193279.1 samtools variation 334082 334082 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 45 ; known ; N/A GL193279.1 samtools variation 588562 588562 . . . alleles " C G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; synonymous GL193279.1 samtools variation 598462 598462 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL193279.1 samtools variation 784819 784819 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 20 ; unknown ; synonymous GL193280.1 samtools variation 448893 448893 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL193280.1 samtools variation 449045 449045 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL193280.1 samtools variation 449267 449267 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193280.1 samtools variation 450157 450157 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193280.1 samtools variation 450169 450169 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193280.1 samtools variation 460259 460259 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 24 ; known ; N/A GL193280.1 samtools variation 460305 460305 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 62 ; known ; N/A GL193280.1 samtools variation 460321 460321 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 80 ; known ; N/A GL193280.1 samtools variation 460362 460362 . . . alleles " T C"; frequencies " 0.741379310344828 0.258620689655172"; depth 58 ; known ; N/A GL193280.1 samtools variation 460416 460416 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 98 ; unknown ; N/A GL193280.1 samtools variation 460562 460562 . . . alleles " C A"; frequencies " 0.266666666666667 0.733333333333333"; depth 120 ; known ; N/A GL193280.1 samtools variation 462013 462013 . . . alleles " A T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; N/A GL193280.1 samtools variation 462022 462022 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; N/A GL193280.1 samtools variation 490753 490753 . . . alleles " G A"; frequencies " 0.601092896174863 0.398907103825137"; depth 183 ; unknown ; synonymous GL193280.1 samtools variation 491429 491429 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193280.1 samtools variation 798412 798412 . . . alleles " C T"; frequencies " 0.641509433962264 0.358490566037736"; depth 106 ; known ; N/A GL193281.1 samtools variation 137379 137379 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193281.1 samtools variation 146388 146388 . . . alleles " A T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193281.1 samtools variation 154374 154374 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193281.1 samtools variation 364966 364966 . . . alleles " T C"; frequencies " 0.401673640167364 0.598326359832636"; depth 239 ; known ; synonymous GL193281.1 samtools variation 394565 394565 . . . alleles " C T"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL193281.1 samtools variation 398739 398739 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193281.1 samtools variation 408878 408878 . . . alleles " G A"; frequencies " 0.664804469273743 0.335195530726257"; depth 358 ; unknown ; N/A GL193281.1 samtools variation 692035 692035 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193281.1 samtools variation 693348 693348 . . . alleles " G T"; frequencies " 0.307692307692308 0.615384615384615"; depth 13 ; known ; N/A GL193281.1 samtools variation 696961 696961 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193281.1 samtools variation 698579 698579 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193281.1 samtools variation 699912 699912 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL193281.1 samtools variation 700739 700739 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL193281.1 samtools variation 703278 703278 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL193281.1 samtools variation 704340 704340 . . . alleles " G A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193281.1 samtools variation 706061 706061 . . . alleles " A G"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL193281.1 samtools variation 707964 707964 . . . alleles " A C"; frequencies " 0.569230769230769 0.430769230769231"; depth 65 ; unknown ; N/A GL193281.1 samtools variation 708229 708229 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193281.1 samtools variation 708662 708662 . . . alleles " C T"; frequencies " 0.525 0.475"; depth 40 ; unknown ; N/A GL193281.1 samtools variation 714191 714191 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193281.1 samtools variation 715977 715977 . . . alleles " A G"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; known ; N/A GL193281.1 samtools variation 717279 717279 . . . alleles " C T"; frequencies " 0.32258064516129 0.67741935483871"; depth 62 ; known ; N/A GL193283.1 samtools variation 355077 355077 . . . alleles " G A"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; known ; N/A GL193283.1 samtools variation 372418 372418 . . . alleles " T G"; frequencies " 0.642857142857143 0.357142857142857"; depth 70 ; unknown ; non-synonymous GL193283.1 samtools variation 372834 372834 . . . alleles " T C"; frequencies " 0.546762589928058 0.453237410071942"; depth 139 ; known ; synonymous GL193283.1 samtools variation 375844 375844 . . . alleles " C T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; known ; N/A GL193283.1 samtools variation 450407 450407 . . . alleles " C G"; frequencies " 0.205882352941176 0.794117647058823"; depth 34 ; unknown ; N/A GL193283.1 samtools variation 454306 454306 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193283.1 samtools variation 747334 747334 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 56 ; known ; non-synonymous GL193283.1 samtools variation 749039 749039 . . . alleles " G A"; frequencies " 0.788306451612903 0.211693548387097"; depth 496 ; unknown ; non-synonymous GL193283.1 samtools variation 749191 749191 . . . alleles " G A"; frequencies " 0.798214285714286 0.201785714285714"; depth 560 ; unknown ; non-synonymous GL193283.1 samtools variation 759792 759792 . . . alleles " A C"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; known ; N/A GL193283.1 samtools variation 770516 770516 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193283.1 samtools variation 770871 770871 . . . alleles " G A"; frequencies " 0.208333333333333 0.791666666666667"; depth 48 ; known ; N/A GL193283.1 samtools variation 778830 778830 . . . alleles " G A"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; N/A GL193283.1 samtools variation 778933 778933 . . . alleles " G A"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL193283.1 samtools variation 783207 783207 . . . alleles " T C"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL193283.1 samtools variation 786325 786325 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL193283.1 samtools variation 787444 787444 . . . alleles " C T"; frequencies " 0.541009463722397 0.458990536277603"; depth 634 ; known ; N/A GL193285.1 samtools variation 209047 209047 . . . alleles " G A"; frequencies " 0.689189189189189 0.310810810810811"; depth 148 ; unknown ; synonymous GL193286.1 samtools variation 659682 659682 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193286.1 samtools variation 660470 660470 . . . alleles " G A"; frequencies " 0.309859154929577 0.690140845070423"; depth 142 ; known ; N/A GL193286.1 samtools variation 662157 662157 . . . alleles " G T"; frequencies " 0.735849056603774 0.264150943396226"; depth 53 ; known ; N/A GL193286.1 samtools variation 663221 663221 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193286.1 samtools variation 672095 672095 . . . alleles " G A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL193286.1 samtools variation 686726 686726 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193286.1 samtools variation 687669 687669 . . . alleles " G A"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; unknown ; N/A GL193286.1 samtools variation 717913 717913 . . . alleles " T C"; frequencies " 0.459459459459459 0.540540540540541"; depth 37 ; known ; N/A GL193286.1 samtools variation 720674 720674 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL193286.1 samtools variation 721774 721774 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL193287.1 samtools variation 55304 55304 . . . alleles " T A"; frequencies " 0.210526315789474 0.789473684210526"; depth 95 ; known ; N/A GL193287.1 samtools variation 55666 55666 . . . alleles " T C"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; known ; N/A GL193287.1 samtools variation 56624 56624 . . . alleles " C T"; frequencies " 0.704697986577181 0.295302013422819"; depth 149 ; unknown ; N/A GL193287.1 samtools variation 57143 57143 . . . alleles " C G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193287.1 samtools variation 543002 543002 . . . alleles " C T"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; known ; synonymous GL193287.1 samtools variation 553998 553998 . . . alleles " T G"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL193289.1 samtools variation 244840 244840 . . . alleles " C T"; frequencies " 0.339285714285714 0.660714285714286"; depth 56 ; unknown ; N/A GL193289.1 samtools variation 256405 256405 . . . alleles " C T"; frequencies " 0.576470588235294 0.423529411764706"; depth 85 ; unknown ; non-synonymous GL193289.1 samtools variation 260288 260288 . . . alleles " G A"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL193289.1 samtools variation 261616 261616 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193289.1 samtools variation 263300 263300 . . . alleles " A G"; frequencies " 0.465753424657534 0.534246575342466"; depth 73 ; unknown ; N/A GL193289.1 samtools variation 625847 625847 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 32 ; unknown ; non-synonymous GL193290.1 samtools variation 673652 673652 . . . alleles " A C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; non-synonymous GL193290.1 samtools variation 683870 683870 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL193290.1 samtools variation 685037 685037 . . . alleles " T C"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193290.1 samtools variation 744019 744019 . . . alleles " T C"; frequencies " 0.27906976744186 0.720930232558139"; depth 43 ; unknown ; synonymous GL193290.1 samtools variation 744522 744522 . . . alleles " G A"; frequencies " 0.709677419354839 0.290322580645161"; depth 62 ; known ; N/A GL193290.1 samtools variation 744610 744610 . . . alleles " A C"; frequencies " 0.288135593220339 0.711864406779661"; depth 59 ; known ; N/A GL193291.1 samtools variation 110631 110631 . . . alleles " T C"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL193291.1 samtools variation 112891 112891 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193291.1 samtools variation 191871 191871 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 50 ; known ; synonymous GL193291.1 samtools variation 217531 217531 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL193291.1 samtools variation 218164 218164 . . . alleles " C T"; frequencies " 0.34375 0.65625"; depth 32 ; known ; N/A GL193291.1 samtools variation 218484 218484 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193291.1 samtools variation 225374 225374 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193291.1 samtools variation 233062 233062 . . . alleles " T A"; frequencies " 0.266666666666667 0.733333333333333"; depth 60 ; known ; N/A GL193291.1 samtools variation 234667 234667 . . . alleles " T C"; frequencies " 0.282608695652174 0.717391304347826"; depth 46 ; known ; N/A GL193291.1 samtools variation 251679 251679 . . . alleles " A G"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; unknown ; N/A GL193292.1 samtools variation 41676 41676 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193292.1 samtools variation 44121 44121 . . . alleles " C A"; frequencies " 0.2 0.793939393939394"; depth 165 ; known ; N/A GL193292.1 samtools variation 44937 44937 . . . alleles " G T"; frequencies " 0.694158075601375 0.305841924398625"; depth 291 ; known ; N/A GL193292.1 samtools variation 45163 45163 . . . alleles " C A"; frequencies " 0.780864197530864 0.219135802469136"; depth 648 ; unknown ; N/A GL193292.1 samtools variation 45186 45186 . . . alleles " T A"; frequencies " 0.685483870967742 0.314516129032258"; depth 496 ; unknown ; N/A GL193292.1 samtools variation 46005 46005 . . . alleles " G T"; frequencies " 0.300469483568075 0.699530516431925"; depth 213 ; known ; non-synonymous GL193292.1 samtools variation 46536 46536 . . . alleles " A G"; frequencies " 0.51219512195122 0.48780487804878"; depth 41 ; unknown ; N/A GL193292.1 samtools variation 48054 48054 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193292.1 samtools variation 48056 48056 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL193292.1 samtools variation 50428 50428 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193292.1 samtools variation 56972 56972 . . . alleles " C T"; frequencies " 0.24031007751938 0.75968992248062"; depth 129 ; known ; synonymous GL193292.1 samtools variation 57449 57449 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 63 ; known ; synonymous GL193292.1 samtools variation 69253 69253 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; N/A GL193292.1 samtools variation 69444 69444 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193292.1 samtools variation 82819 82819 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193292.1 samtools variation 93930 93930 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193292.1 samtools variation 116116 116116 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193292.1 samtools variation 121284 121284 . . . alleles " G T"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL193292.1 samtools variation 122795 122795 . . . alleles " C G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193292.1 samtools variation 145470 145470 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193292.1 samtools variation 145471 145471 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193292.1 samtools variation 169380 169380 . . . alleles " A C"; frequencies " 0.491228070175439 0.508771929824561"; depth 456 ; unknown ; non-synonymous GL193292.1 samtools variation 169459 169459 . . . alleles " C T"; frequencies " 0.566951566951567 0.43019943019943"; depth 351 ; unknown ; synonymous GL193292.1 samtools variation 169573 169573 . . . alleles " G A"; frequencies " 0.627376425855513 0.372623574144487"; depth 263 ; unknown ; synonymous GL193292.1 samtools variation 169934 169934 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193292.1 samtools variation 171852 171852 . . . alleles " C G"; frequencies " 0.343137254901961 0.656862745098039"; depth 102 ; known ; non-synonymous GL193292.1 samtools variation 172133 172133 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193292.1 samtools variation 172253 172253 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193292.1 samtools variation 172256 172256 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193292.1 samtools variation 172732 172732 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; known ; N/A GL193292.1 samtools variation 172839 172839 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193292.1 samtools variation 173176 173176 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193292.1 samtools variation 173245 173245 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193292.1 samtools variation 174084 174084 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL193292.1 samtools variation 174136 174136 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193292.1 samtools variation 181154 181154 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 68 ; unknown ; non-synonymous GL193292.1 samtools variation 190315 190315 . . . alleles " T G"; frequencies " 0.705882352941177 0.294117647058824"; depth 51 ; unknown ; N/A GL193292.1 samtools variation 190363 190363 . . . alleles " A G"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL193292.1 samtools variation 190502 190502 . . . alleles " G C"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; N/A GL193292.1 samtools variation 190521 190521 . . . alleles " T C"; frequencies " 0.627906976744186 0.372093023255814"; depth 43 ; unknown ; N/A GL193292.1 samtools variation 190836 190836 . . . alleles " T C"; frequencies " 0.455696202531646 0.544303797468354"; depth 79 ; unknown ; N/A GL193292.1 samtools variation 191704 191704 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 75 ; known ; N/A GL193292.1 samtools variation 191847 191847 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 54 ; unknown ; N/A GL193292.1 samtools variation 191939 191939 . . . alleles " C T"; frequencies " 0.377777777777778 0.622222222222222"; depth 45 ; unknown ; N/A GL193292.1 samtools variation 192177 192177 . . . alleles " A G"; frequencies " 0.205128205128205 0.794871794871795"; depth 39 ; known ; N/A GL193292.1 samtools variation 192617 192617 . . . alleles " G A"; frequencies " 0.365853658536585 0.634146341463415"; depth 41 ; known ; N/A GL193292.1 samtools variation 195412 195412 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL193292.1 samtools variation 195935 195935 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193292.1 samtools variation 626826 626826 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; synonymous GL193292.1 samtools variation 781530 781530 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193293.1 samtools variation 159834 159834 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; synonymous GL193293.1 samtools variation 164516 164516 . . . alleles " T C"; frequencies " 0.510791366906475 0.489208633093525"; depth 139 ; unknown ; synonymous GL193293.1 samtools variation 165788 165788 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193294.1 samtools variation 23547 23547 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193294.1 samtools variation 25898 25898 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; known ; synonymous GL193294.1 samtools variation 30662 30662 . . . alleles " G A"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; known ; synonymous GL193294.1 samtools variation 585411 585411 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL193295.1 samtools variation 99042 99042 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; known ; N/A GL193295.1 samtools variation 101368 101368 . . . alleles " C T"; frequencies " 0.254237288135593 0.745762711864407"; depth 59 ; unknown ; non-synonymous GL193295.1 samtools variation 101372 101372 . . . alleles " G T"; frequencies " 0.254237288135593 0.745762711864407"; depth 59 ; unknown ; synonymous GL193295.1 samtools variation 126239 126239 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193295.1 samtools variation 126283 126283 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193295.1 samtools variation 189985 189985 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 20 ; unknown ; synonymous GL193295.1 samtools variation 262180 262180 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; known ; N/A GL193295.1 samtools variation 268106 268106 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; N/A GL193295.1 samtools variation 268115 268115 . . . alleles " C A"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL193295.1 samtools variation 385037 385037 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193295.1 samtools variation 404321 404321 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193295.1 samtools variation 404661 404661 . . . alleles " C T"; frequencies " 0.742857142857143 0.228571428571429"; depth 35 ; unknown ; synonymous GL193295.1 samtools variation 411598 411598 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 60 ; unknown ; N/A GL193295.1 samtools variation 412042 412042 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193295.1 samtools variation 413196 413196 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193295.1 samtools variation 454552 454552 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193295.1 samtools variation 787706 787706 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193295.1 samtools variation 789391 789391 . . . alleles " T C"; frequencies " 0.225 0.775"; depth 40 ; unknown ; N/A GL193300.1 samtools variation 78357 78357 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; synonymous GL193300.1 samtools variation 90148 90148 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193300.1 samtools variation 101371 101371 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL193300.1 samtools variation 106794 106794 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193300.1 samtools variation 128750 128750 . . . alleles " G T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193300.1 samtools variation 128751 128751 . . . alleles " G C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193300.1 samtools variation 151775 151775 . . . alleles " G T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; synonymous GL193300.1 samtools variation 308174 308174 . . . alleles " G A"; frequencies " 0.6953125 0.3046875"; depth 128 ; unknown ; N/A GL193300.1 samtools variation 308932 308932 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 180 ; unknown ; N/A GL193300.1 samtools variation 312485 312485 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193300.1 samtools variation 312930 312930 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193300.1 samtools variation 314515 314515 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193300.1 samtools variation 338227 338227 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 56 ; known ; synonymous GL193300.1 samtools variation 578078 578078 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193300.1 samtools variation 602161 602161 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 55 ; unknown ; synonymous GL193300.1 samtools variation 603565 603565 . . . alleles " T G"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; synonymous GL193300.1 samtools variation 603610 603610 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 51 ; unknown ; synonymous GL193300.1 samtools variation 621411 621411 . . . alleles " A G"; frequencies " 0.306122448979592 0.693877551020408"; depth 49 ; unknown ; synonymous GL193300.1 samtools variation 624470 624470 . . . alleles " G T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; synonymous GL193300.1 samtools variation 628382 628382 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; synonymous GL193300.1 samtools variation 745494 745494 . . . alleles " A G"; frequencies " 0.361111111111111 0.638888888888889"; depth 36 ; unknown ; N/A GL193301.1 samtools variation 24930 24930 . . . alleles " G A"; frequencies " 0.759398496240602 0.240601503759398"; depth 266 ; unknown ; N/A GL193301.1 samtools variation 25027 25027 . . . alleles " G A"; frequencies " 0.734597156398104 0.265402843601896"; depth 211 ; unknown ; N/A GL193301.1 samtools variation 28342 28342 . . . alleles " G C"; frequencies " 0.204545454545455 0.795454545454545"; depth 44 ; known ; N/A GL193301.1 samtools variation 217998 217998 . . . alleles " G A"; frequencies " 0.520547945205479 0.479452054794521"; depth 73 ; unknown ; synonymous GL193301.1 samtools variation 234430 234430 . . . alleles " A G"; frequencies " 0.426204819277108 0.573795180722892"; depth 664 ; unknown ; N/A GL193301.1 samtools variation 236035 236035 . . . alleles " T C"; frequencies " 0.418262150220913 0.581737849779087"; depth 679 ; unknown ; non-synonymous GL193301.1 samtools variation 236179 236179 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193301.1 samtools variation 236201 236201 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193301.1 samtools variation 236272 236272 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL193301.1 samtools variation 236970 236970 . . . alleles " T C"; frequencies " 0.393811533052039 0.606188466947961"; depth 711 ; unknown ; synonymous GL193301.1 samtools variation 237158 237158 . . . alleles " A G"; frequencies " 0.339425587467363 0.660574412532637"; depth 383 ; unknown ; non-synonymous GL193301.1 samtools variation 237189 237189 . . . alleles " C T"; frequencies " 0.763097949886105 0.236902050113895"; depth 439 ; unknown ; synonymous GL193301.1 samtools variation 238535 238535 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193301.1 samtools variation 239783 239783 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193301.1 samtools variation 264332 264332 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193301.1 samtools variation 264397 264397 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL193301.1 samtools variation 266118 266118 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193301.1 samtools variation 267777 267777 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193301.1 samtools variation 270696 270696 . . . alleles " T A"; frequencies " 0.748815165876777 0.251184834123223"; depth 211 ; unknown ; N/A GL193301.1 samtools variation 270730 270730 . . . alleles " C T"; frequencies " 0.690104166666667 0.309895833333333"; depth 384 ; known ; N/A GL193301.1 samtools variation 271458 271458 . . . alleles " G T"; frequencies " 0.466071428571429 0.532142857142857"; depth 560 ; known ; synonymous GL193301.1 samtools variation 272558 272558 . . . alleles " C A"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL193301.1 samtools variation 273222 273222 . . . alleles " G T"; frequencies " 0.754716981132076 0.245283018867925"; depth 53 ; unknown ; N/A GL193301.1 samtools variation 274591 274591 . . . alleles " C G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL193301.1 samtools variation 274690 274690 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193301.1 samtools variation 275266 275266 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL193301.1 samtools variation 275269 275269 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL193301.1 samtools variation 276198 276198 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193301.1 samtools variation 282028 282028 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; N/A GL193301.1 samtools variation 282357 282357 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193301.1 samtools variation 282750 282750 . . . alleles " C A"; frequencies " 0.4 0.428571428571429"; depth 35 ; known ; N/A GL193301.1 samtools variation 283027 283027 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL193301.1 samtools variation 283038 283038 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193301.1 samtools variation 283142 283142 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193301.1 samtools variation 283481 283481 . . . alleles " A G"; frequencies " 0.756756756756757 0.243243243243243"; depth 74 ; known ; N/A GL193301.1 samtools variation 283758 283758 . . . alleles " C T"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; known ; N/A GL193301.1 samtools variation 285589 285589 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193301.1 samtools variation 287331 287331 . . . alleles " C T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL193301.1 samtools variation 289395 289395 . . . alleles " A G"; frequencies " 0.387610619469027 0.612389380530973"; depth 565 ; known ; synonymous GL193301.1 samtools variation 289422 289422 . . . alleles " G A"; frequencies " 0.398863636363636 0.601136363636364"; depth 880 ; known ; synonymous GL193301.1 samtools variation 291186 291186 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193301.1 samtools variation 293508 293508 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193301.1 samtools variation 314749 314749 . . . alleles " C T"; frequencies " 0.549019607843137 0.450980392156863"; depth 51 ; known ; N/A GL193301.1 samtools variation 315389 315389 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL193301.1 samtools variation 315395 315395 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 24 ; known ; N/A GL193301.1 samtools variation 337175 337175 . . . alleles " C T"; frequencies " 0.71875 0.28125"; depth 64 ; unknown ; non-synonymous GL193301.1 samtools variation 337760 337760 . . . alleles " T C"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; non-synonymous GL193301.1 samtools variation 338874 338874 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; synonymous GL193303.1 samtools variation 59014 59014 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193303.1 samtools variation 59203 59203 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193303.1 samtools variation 59573 59573 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL193303.1 samtools variation 59614 59614 . . . alleles " G A"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL193303.1 samtools variation 202950 202950 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193303.1 samtools variation 203893 203893 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193303.1 samtools variation 203920 203920 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193303.1 samtools variation 206505 206505 . . . alleles " C A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193303.1 samtools variation 227598 227598 . . . alleles " G A"; frequencies " 0.589285714285714 0.410714285714286"; depth 56 ; unknown ; N/A GL193303.1 samtools variation 230061 230061 . . . alleles " T C"; frequencies " 0.527027027027027 0.472972972972973"; depth 74 ; known ; N/A GL193303.1 samtools variation 230282 230282 . . . alleles " G A"; frequencies " 0.673076923076923 0.326923076923077"; depth 52 ; unknown ; N/A GL193303.1 samtools variation 684059 684059 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193303.1 samtools variation 684436 684436 . . . alleles " G C"; frequencies " 0.663366336633663 0.336633663366337"; depth 101 ; unknown ; N/A GL193303.1 samtools variation 693141 693141 . . . alleles " A G"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL193304.1 samtools variation 36492 36492 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL193304.1 samtools variation 53802 53802 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193304.1 samtools variation 57609 57609 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193304.1 samtools variation 64193 64193 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL193304.1 samtools variation 86307 86307 . . . alleles " C T"; frequencies " 0.798245614035088 0.201754385964912"; depth 228 ; unknown ; synonymous GL193304.1 samtools variation 92010 92010 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL193304.1 samtools variation 94155 94155 . . . alleles " G A"; frequencies " 0.594936708860759 0.405063291139241"; depth 79 ; unknown ; N/A GL193304.1 samtools variation 94214 94214 . . . alleles " T G"; frequencies " 0.573333333333333 0.413333333333333"; depth 75 ; unknown ; N/A GL193304.1 samtools variation 94266 94266 . . . alleles " G A"; frequencies " 0.773584905660377 0.226415094339623"; depth 106 ; unknown ; N/A GL193304.1 samtools variation 94593 94593 . . . alleles " C T"; frequencies " 0.775 0.225"; depth 40 ; unknown ; N/A GL193304.1 samtools variation 95358 95358 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193304.1 samtools variation 97027 97027 . . . alleles " G A"; frequencies " 0.629139072847682 0.364238410596026"; depth 151 ; unknown ; N/A GL193304.1 samtools variation 111217 111217 . . . alleles " T C"; frequencies " 0.234159779614325 0.765840220385675"; depth 363 ; known ; N/A GL193304.1 samtools variation 112565 112565 . . . alleles " A G"; frequencies " 0.799054373522459 0.200945626477541"; depth 423 ; unknown ; N/A GL193304.1 samtools variation 114622 114622 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193304.1 samtools variation 119976 119976 . . . alleles " T C"; frequencies " 0.78839590443686 0.21160409556314"; depth 293 ; unknown ; non-synonymous GL193304.1 samtools variation 146419 146419 . . . alleles " T C"; frequencies " 0.646408839779006 0.353591160220994"; depth 181 ; unknown ; N/A GL193304.1 samtools variation 518863 518863 . . . alleles " G A"; frequencies " 0.448979591836735 0.551020408163265"; depth 98 ; unknown ; non-synonymous GL193304.1 samtools variation 522441 522441 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL193304.1 samtools variation 522465 522465 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193304.1 samtools variation 522509 522509 . . . alleles " T A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193304.1 samtools variation 640128 640128 . . . alleles " T A"; frequencies " 0.731404958677686 0.268595041322314"; depth 242 ; unknown ; synonymous GL193304.1 samtools variation 734558 734558 . . . alleles " G C"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; known ; N/A GL193304.1 samtools variation 735644 735644 . . . alleles " A C"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL193305.1 samtools variation 227930 227930 . . . alleles " G A"; frequencies " 0.491803278688525 0.508196721311475"; depth 61 ; unknown ; non-synonymous GL193305.1 samtools variation 227964 227964 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 57 ; known ; synonymous GL193305.1 samtools variation 228000 228000 . . . alleles " C T"; frequencies " 0.542857142857143 0.457142857142857"; depth 70 ; unknown ; synonymous GL193305.1 samtools variation 228755 228755 . . . alleles " G A"; frequencies " 0.763779527559055 0.236220472440945"; depth 127 ; unknown ; non-synonymous GL193305.1 samtools variation 247979 247979 . . . alleles " C A"; frequencies " 0.508196721311475 0.491803278688525"; depth 183 ; known ; non-synonymous GL193305.1 samtools variation 251621 251621 . . . alleles " A G"; frequencies " 0.298507462686567 0.701492537313433"; depth 134 ; known ; non-synonymous GL193305.1 samtools variation 403613 403613 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL193305.1 samtools variation 512686 512686 . . . alleles " C T"; frequencies " 0.790123456790123 0.209876543209877"; depth 81 ; known ; N/A GL193305.1 samtools variation 513129 513129 . . . alleles " G A"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; unknown ; N/A GL193305.1 samtools variation 513266 513266 . . . alleles " G T"; frequencies " 0.767123287671233 0.232876712328767"; depth 73 ; unknown ; N/A GL193305.1 samtools variation 513373 513373 . . . alleles " G T"; frequencies " 0.660550458715596 0.339449541284404"; depth 109 ; unknown ; N/A GL193305.1 samtools variation 513909 513909 . . . alleles " T C"; frequencies " 0.431372549019608 0.568627450980392"; depth 51 ; known ; N/A GL193305.1 samtools variation 514973 514973 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193305.1 samtools variation 515833 515833 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193305.1 samtools variation 515905 515905 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193305.1 samtools variation 515913 515913 . . . alleles " A T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL193305.1 samtools variation 562735 562735 . . . alleles " G A"; frequencies " 0.613333333333333 0.386666666666667"; depth 75 ; unknown ; synonymous GL193305.1 samtools variation 565454 565454 . . . alleles " T C"; frequencies " 0.308823529411765 0.691176470588235"; depth 68 ; known ; synonymous GL193305.1 samtools variation 565534 565534 . . . alleles " C G"; frequencies " 0.585106382978723 0.414893617021277"; depth 94 ; known ; non-synonymous GL193305.1 samtools variation 680267 680267 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; known ; N/A GL193305.1 samtools variation 689362 689362 . . . alleles " T C"; frequencies " 0.276923076923077 0.723076923076923"; depth 130 ; known ; N/A GL193305.1 samtools variation 690842 690842 . . . alleles " C G"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; N/A GL193305.1 samtools variation 691577 691577 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL193305.1 samtools variation 691819 691819 . . . alleles " C T"; frequencies " 0.241379310344828 0.758620689655172"; depth 29 ; known ; N/A GL193305.1 samtools variation 695350 695350 . . . alleles " G C"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL193305.1 samtools variation 695639 695639 . . . alleles " A G"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL193305.1 samtools variation 702893 702893 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193305.1 samtools variation 703634 703634 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193305.1 samtools variation 703673 703673 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193305.1 samtools variation 704598 704598 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193305.1 samtools variation 704713 704713 . . . alleles " T G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193305.1 samtools variation 704908 704908 . . . alleles " G A"; frequencies " 0.305555555555556 0.694444444444444"; depth 36 ; known ; N/A GL193305.1 samtools variation 705245 705245 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL193305.1 samtools variation 705249 705249 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL193305.1 samtools variation 705576 705576 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193305.1 samtools variation 711891 711891 . . . alleles " T C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; known ; N/A GL193305.1 samtools variation 712930 712930 . . . alleles " A G"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; known ; N/A GL193305.1 samtools variation 714244 714244 . . . alleles " C T"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; known ; N/A GL193309.1 samtools variation 270175 270175 . . . alleles " T C"; frequencies " 0.593023255813954 0.406976744186047"; depth 86 ; unknown ; N/A GL193309.1 samtools variation 270401 270401 . . . alleles " T C"; frequencies " 0.655677655677656 0.344322344322344"; depth 273 ; unknown ; N/A GL193309.1 samtools variation 270509 270509 . . . alleles " A C"; frequencies " 0.642857142857143 0.357142857142857"; depth 210 ; unknown ; N/A GL193309.1 samtools variation 270710 270710 . . . alleles " C T"; frequencies " 0.688775510204082 0.311224489795918"; depth 196 ; unknown ; N/A GL193309.1 samtools variation 270849 270849 . . . alleles " G A"; frequencies " 0.694029850746269 0.305970149253731"; depth 134 ; unknown ; N/A GL193309.1 samtools variation 272402 272402 . . . alleles " A G"; frequencies " 0.694915254237288 0.305084745762712"; depth 118 ; unknown ; N/A GL193309.1 samtools variation 272595 272595 . . . alleles " G T"; frequencies " 0.644444444444444 0.355555555555556"; depth 135 ; unknown ; N/A GL193309.1 samtools variation 273244 273244 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL193309.1 samtools variation 273251 273251 . . . alleles " G A"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL193309.1 samtools variation 273676 273676 . . . alleles " C A"; frequencies " 0.582417582417582 0.417582417582418"; depth 182 ; unknown ; N/A GL193309.1 samtools variation 273844 273844 . . . alleles " C T"; frequencies " 0.592356687898089 0.407643312101911"; depth 157 ; unknown ; N/A GL193309.1 samtools variation 273890 273890 . . . alleles " T A"; frequencies " 0.64375 0.35625"; depth 160 ; unknown ; N/A GL193309.1 samtools variation 306446 306446 . . . alleles " G A"; frequencies " 0.411167512690355 0.588832487309645"; depth 197 ; unknown ; synonymous GL193309.1 samtools variation 455951 455951 . . . alleles " C A"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; N/A GL193309.1 samtools variation 457851 457851 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193309.1 samtools variation 464122 464122 . . . alleles " C T"; frequencies " 0.623188405797101 0.36231884057971"; depth 69 ; unknown ; synonymous GL193309.1 samtools variation 467224 467224 . . . alleles " A G"; frequencies " 0.645161290322581 0.354838709677419"; depth 186 ; unknown ; synonymous GL193309.1 samtools variation 467456 467456 . . . alleles " T A"; frequencies " 0.566964285714286 0.433035714285714"; depth 224 ; unknown ; non-synonymous GL193309.1 samtools variation 468555 468555 . . . alleles " G A"; frequencies " 0.711340206185567 0.288659793814433"; depth 97 ; unknown ; N/A GL193309.1 samtools variation 468741 468741 . . . alleles " A G"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL193309.1 samtools variation 468807 468807 . . . alleles " T A"; frequencies " 0.641025641025641 0.358974358974359"; depth 78 ; unknown ; N/A GL193309.1 samtools variation 468917 468917 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 154 ; unknown ; N/A GL193309.1 samtools variation 469167 469167 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 46 ; unknown ; N/A GL193309.1 samtools variation 482776 482776 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193309.1 samtools variation 484582 484582 . . . alleles " C A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; synonymous GL193309.1 samtools variation 748355 748355 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193309.1 samtools variation 761087 761087 . . . alleles " T C"; frequencies " 0.357798165137615 0.642201834862385"; depth 109 ; known ; N/A GL193310.1 samtools variation 109030 109030 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; synonymous GL193310.1 samtools variation 460187 460187 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; synonymous GL193311.1 samtools variation 46288 46288 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; non-synonymous GL193311.1 samtools variation 53398 53398 . . . alleles " C G"; frequencies " 0.69811320754717 0.30188679245283"; depth 53 ; unknown ; synonymous GL193311.1 samtools variation 53425 53425 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 70 ; unknown ; synonymous GL193311.1 samtools variation 53917 53917 . . . alleles " G T"; frequencies " 0.726495726495726 0.273504273504274"; depth 117 ; unknown ; non-synonymous GL193311.1 samtools variation 63634 63634 . . . alleles " G A"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; unknown ; synonymous GL193311.1 samtools variation 65405 65405 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193311.1 samtools variation 65444 65444 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL193311.1 samtools variation 65493 65493 . . . alleles " G A"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193311.1 samtools variation 238021 238021 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193311.1 samtools variation 238099 238099 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193311.1 samtools variation 425219 425219 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193311.1 samtools variation 425325 425325 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193311.1 samtools variation 425353 425353 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193311.1 samtools variation 425485 425485 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193311.1 samtools variation 425831 425831 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193311.1 samtools variation 425950 425950 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193311.1 samtools variation 428725 428725 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193311.1 samtools variation 428794 428794 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193311.1 samtools variation 431672 431672 . . . alleles " G A"; frequencies " 0.43859649122807 0.56140350877193"; depth 57 ; known ; N/A GL193311.1 samtools variation 433495 433495 . . . alleles " T C"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; known ; N/A GL193311.1 samtools variation 434547 434547 . . . alleles " G C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL193311.1 samtools variation 437233 437233 . . . alleles " A C"; frequencies " 0.47093023255814 0.529069767441861"; depth 344 ; known ; N/A GL193311.1 samtools variation 437476 437476 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 132 ; unknown ; N/A GL193311.1 samtools variation 437477 437477 . . . alleles " A G"; frequencies " 0.386363636363636 0.613636363636364"; depth 132 ; unknown ; N/A GL193311.1 samtools variation 438140 438140 . . . alleles " A G"; frequencies " 0.591414944356121 0.408585055643879"; depth 629 ; known ; synonymous GL193311.1 samtools variation 515478 515478 . . . alleles " C G"; frequencies " 0.794520547945205 0.205479452054795"; depth 146 ; unknown ; synonymous GL193311.1 samtools variation 517271 517271 . . . alleles " A G"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; unknown ; N/A GL193311.1 samtools variation 518172 518172 . . . alleles " C T"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL193311.1 samtools variation 520211 520211 . . . alleles " C T"; frequencies " 0.783333333333333 0.216666666666667"; depth 60 ; unknown ; N/A GL193311.1 samtools variation 521468 521468 . . . alleles " C A"; frequencies " 0.575 0.425"; depth 40 ; known ; N/A GL193311.1 samtools variation 605606 605606 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193311.1 samtools variation 609519 609519 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; synonymous GL193311.1 samtools variation 611939 611939 . . . alleles " C T"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; synonymous GL193311.1 samtools variation 614676 614676 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; non-synonymous GL193311.1 samtools variation 652042 652042 . . . alleles " A G"; frequencies " 0.219512195121951 0.780487804878049"; depth 41 ; known ; N/A GL193311.1 samtools variation 653744 653744 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL193311.1 samtools variation 654081 654081 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193311.1 samtools variation 657612 657612 . . . alleles " A C"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; unknown ; N/A GL193311.1 samtools variation 657775 657775 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL193311.1 samtools variation 661231 661231 . . . alleles " A T"; frequencies " 0.724770642201835 0.275229357798165"; depth 109 ; known ; N/A GL193311.1 samtools variation 721934 721934 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; known ; N/A GL193314.1 samtools variation 2751 2751 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193314.1 samtools variation 581849 581849 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 39 ; known ; synonymous GL193314.1 samtools variation 608416 608416 . . . alleles " G A"; frequencies " 0.574468085106383 0.425531914893617"; depth 47 ; unknown ; N/A GL193314.1 samtools variation 610909 610909 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193314.1 samtools variation 612904 612904 . . . alleles " A G"; frequencies " 0.647058823529412 0.323529411764706"; depth 34 ; unknown ; synonymous GL193314.1 samtools variation 653272 653272 . . . alleles " G C"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL193314.1 samtools variation 653330 653330 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL193314.1 samtools variation 654139 654139 . . . alleles " A G"; frequencies " 0.415607985480944 0.584392014519056"; depth 551 ; unknown ; synonymous GL193314.1 samtools variation 654207 654207 . . . alleles " C T"; frequencies " 0.358870967741935 0.641129032258065"; depth 248 ; unknown ; non-synonymous GL193314.1 samtools variation 661113 661113 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 42 ; unknown ; N/A GL193314.1 samtools variation 662048 662048 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193314.1 samtools variation 663075 663075 . . . alleles " T G"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL193314.1 samtools variation 666079 666079 . . . alleles " G A"; frequencies " 0.382352941176471 0.617647058823529"; depth 136 ; known ; N/A GL193314.1 samtools variation 666502 666502 . . . alleles " G A"; frequencies " 0.417293233082707 0.582706766917293"; depth 266 ; known ; N/A GL193314.1 samtools variation 667239 667239 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL193314.1 samtools variation 667249 667249 . . . alleles " T A"; frequencies " 0.333333333333333 0.666666666666667"; depth 96 ; known ; N/A GL193315.1 samtools variation 344670 344670 . . . alleles " G A"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL193315.1 samtools variation 345016 345016 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193315.1 samtools variation 345150 345150 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193315.1 samtools variation 345316 345316 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193315.1 samtools variation 346827 346827 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193315.1 samtools variation 348337 348337 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193315.1 samtools variation 348357 348357 . . . alleles " C G"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193315.1 samtools variation 353036 353036 . . . alleles " T A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL193315.1 samtools variation 353050 353050 . . . alleles " G A"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL193315.1 samtools variation 354455 354455 . . . alleles " C T"; frequencies " 0.41304347826087 0.58695652173913"; depth 46 ; unknown ; N/A GL193315.1 samtools variation 360552 360552 . . . alleles " T C"; frequencies " 0.382352941176471 0.617647058823529"; depth 34 ; unknown ; N/A GL193315.1 samtools variation 361121 361121 . . . alleles " T A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193315.1 samtools variation 372588 372588 . . . alleles " A G"; frequencies " 0.667763157894737 0.332236842105263"; depth 304 ; unknown ; synonymous GL193315.1 samtools variation 378694 378694 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193315.1 samtools variation 381143 381143 . . . alleles " T C"; frequencies " 0.662121212121212 0.337878787878788"; depth 660 ; unknown ; non-synonymous GL193315.1 samtools variation 392594 392594 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL193315.1 samtools variation 392660 392660 . . . alleles " A G"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL193315.1 samtools variation 397793 397793 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 90 ; unknown ; N/A GL193317.1 samtools variation 129175 129175 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193317.1 samtools variation 237538 237538 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; synonymous GL193317.1 samtools variation 260506 260506 . . . alleles " T C"; frequencies " 0.673469387755102 0.326530612244898"; depth 49 ; unknown ; synonymous GL193317.1 samtools variation 285583 285583 . . . alleles " T C"; frequencies " 0.553846153846154 0.446153846153846"; depth 65 ; unknown ; synonymous GL193317.1 samtools variation 389852 389852 . . . alleles " G C"; frequencies " 0.623931623931624 0.376068376068376"; depth 117 ; known ; N/A GL193317.1 samtools variation 391510 391510 . . . alleles " A G"; frequencies " 0.451219512195122 0.548780487804878"; depth 82 ; unknown ; N/A GL193317.1 samtools variation 409782 409782 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; unknown ; N/A GL193317.1 samtools variation 432726 432726 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193319.1 samtools variation 3058 3058 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193319.1 samtools variation 4573 4573 . . . alleles " C T"; frequencies " 0.736363636363636 0.263636363636364"; depth 110 ; known ; synonymous GL193319.1 samtools variation 4710 4710 . . . alleles " G T"; frequencies " 0.676767676767677 0.323232323232323"; depth 99 ; known ; N/A GL193319.1 samtools variation 155655 155655 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 177 ; known ; synonymous GL193319.1 samtools variation 156585 156585 . . . alleles " C T"; frequencies " 0.621621621621622 0.378378378378378"; depth 74 ; known ; synonymous GL193319.1 samtools variation 158002 158002 . . . alleles " T C"; frequencies " 0.424242424242424 0.575757575757576"; depth 132 ; known ; synonymous GL193319.1 samtools variation 166472 166472 . . . alleles " G C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL193319.1 samtools variation 166546 166546 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193319.1 samtools variation 170622 170622 . . . alleles " C T"; frequencies " 0.314285714285714 0.685714285714286"; depth 35 ; known ; N/A GL193319.1 samtools variation 181169 181169 . . . alleles " A G"; frequencies " 0.509113001215067 0.490886998784933"; depth 823 ; unknown ; N/A GL193319.1 samtools variation 184609 184609 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL193319.1 samtools variation 210932 210932 . . . alleles " G A"; frequencies " 0.371134020618557 0.628865979381443"; depth 388 ; unknown ; N/A GL193319.1 samtools variation 213200 213200 . . . alleles " G A"; frequencies " 0.441326530612245 0.558673469387755"; depth 392 ; unknown ; non-synonymous GL193319.1 samtools variation 216658 216658 . . . alleles " A G"; frequencies " 0.22508038585209 0.77491961414791"; depth 311 ; unknown ; synonymous GL193319.1 samtools variation 218629 218629 . . . alleles " C T"; frequencies " 0.590361445783133 0.409638554216867"; depth 83 ; known ; non-synonymous GL193319.1 samtools variation 218735 218735 . . . alleles " A G"; frequencies " 0.320197044334975 0.679802955665025"; depth 203 ; known ; synonymous GL193319.1 samtools variation 218989 218989 . . . alleles " C A"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; unknown ; N/A GL193319.1 samtools variation 219347 219347 . . . alleles " A C"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL193319.1 samtools variation 221611 221611 . . . alleles " A G"; frequencies " 0.216783216783217 0.783216783216783"; depth 143 ; known ; synonymous GL193319.1 samtools variation 222184 222184 . . . alleles " A G"; frequencies " 0.207792207792208 0.792207792207792"; depth 77 ; known ; synonymous GL193319.1 samtools variation 222500 222500 . . . alleles " T C"; frequencies " 0.382978723404255 0.617021276595745"; depth 47 ; known ; N/A GL193319.1 samtools variation 222705 222705 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193319.1 samtools variation 223758 223758 . . . alleles " T C"; frequencies " 0.773809523809524 0.226190476190476"; depth 84 ; known ; non-synonymous GL193319.1 samtools variation 223903 223903 . . . alleles " G A"; frequencies " 0.21264367816092 0.78735632183908"; depth 174 ; unknown ; synonymous GL193319.1 samtools variation 224015 224015 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 60 ; known ; non-synonymous GL193319.1 samtools variation 224233 224233 . . . alleles " G A"; frequencies " 0.31 0.69"; depth 100 ; known ; synonymous GL193319.1 samtools variation 233895 233895 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193319.1 samtools variation 237474 237474 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL193319.1 samtools variation 305422 305422 . . . alleles " C T"; frequencies " 0.674157303370786 0.325842696629214"; depth 89 ; known ; synonymous GL193319.1 samtools variation 312646 312646 . . . alleles " G C"; frequencies " 0.384615384615385 0.615384615384615"; depth 52 ; unknown ; N/A GL193319.1 samtools variation 314333 314333 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; non-synonymous GL193319.1 samtools variation 315906 315906 . . . alleles " G C"; frequencies " 0.285714285714286 0.714285714285714"; depth 42 ; known ; N/A GL193319.1 samtools variation 319362 319362 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193319.1 samtools variation 320833 320833 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; known ; N/A GL193319.1 samtools variation 323443 323443 . . . alleles " C A"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; unknown ; N/A GL193319.1 samtools variation 325550 325550 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193319.1 samtools variation 336404 336404 . . . alleles " C T"; frequencies " 0.508771929824561 0.491228070175439"; depth 57 ; unknown ; non-synonymous GL193319.1 samtools variation 337450 337450 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 30 ; known ; N/A GL193319.1 samtools variation 340324 340324 . . . alleles " A G"; frequencies " 0.346938775510204 0.653061224489796"; depth 147 ; unknown ; non-synonymous GL193319.1 samtools variation 439551 439551 . . . alleles " C T"; frequencies " 0.431192660550459 0.568807339449541"; depth 109 ; unknown ; synonymous GL193319.1 samtools variation 443588 443588 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193319.1 samtools variation 454107 454107 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193319.1 samtools variation 458136 458136 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL193319.1 samtools variation 471262 471262 . . . alleles " G C"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL193319.1 samtools variation 476689 476689 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; unknown ; N/A GL193319.1 samtools variation 485805 485805 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL193319.1 samtools variation 486491 486491 . . . alleles " G C"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL193319.1 samtools variation 487647 487647 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 92 ; unknown ; N/A GL193319.1 samtools variation 503351 503351 . . . alleles " C T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL193319.1 samtools variation 520289 520289 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; synonymous GL193319.1 samtools variation 524781 524781 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL193319.1 samtools variation 536228 536228 . . . alleles " G C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL193319.1 samtools variation 558162 558162 . . . alleles " C G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193319.1 samtools variation 562323 562323 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193319.1 samtools variation 567680 567680 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; known ; N/A GL193319.1 samtools variation 567927 567927 . . . alleles " C T"; frequencies " 0.710743801652893 0.289256198347107"; depth 121 ; unknown ; N/A GL193319.1 samtools variation 568487 568487 . . . alleles " G A"; frequencies " 0.403508771929825 0.596491228070175"; depth 57 ; known ; N/A GL193319.1 samtools variation 569303 569303 . . . alleles " T C"; frequencies " 0.563517915309446 0.436482084690554"; depth 307 ; unknown ; synonymous GL193319.1 samtools variation 602268 602268 . . . alleles " G A"; frequencies " 0.426470588235294 0.573529411764706"; depth 68 ; known ; synonymous GL193319.1 samtools variation 603428 603428 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL193319.1 samtools variation 606507 606507 . . . alleles " G C"; frequencies " 0.752631578947368 0.247368421052632"; depth 190 ; unknown ; N/A GL193319.1 samtools variation 747018 747018 . . . alleles " A G"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; N/A GL193319.1 samtools variation 749450 749450 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL193319.1 samtools variation 750306 750306 . . . alleles " A T"; frequencies " 0.21875 0.78125"; depth 32 ; known ; N/A GL193319.1 samtools variation 761705 761705 . . . alleles " A G"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL193319.1 samtools variation 763474 763474 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 60 ; known ; N/A GL193319.1 samtools variation 765779 765779 . . . alleles " A G"; frequencies " 0.289855072463768 0.710144927536232"; depth 69 ; known ; synonymous GL193321.1 samtools variation 147824 147824 . . . alleles " A G"; frequencies " 0.691176470588235 0.308823529411765"; depth 68 ; unknown ; N/A GL193321.1 samtools variation 188213 188213 . . . alleles " G C"; frequencies " 0.7875 0.2125"; depth 80 ; unknown ; N/A GL193321.1 samtools variation 200981 200981 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193321.1 samtools variation 204153 204153 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL193321.1 samtools variation 222378 222378 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL193321.1 samtools variation 223067 223067 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193321.1 samtools variation 231818 231818 . . . alleles " C T"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL193321.1 samtools variation 249148 249148 . . . alleles " G C"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL193321.1 samtools variation 331391 331391 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193321.1 samtools variation 336685 336685 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193321.1 samtools variation 336760 336760 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193321.1 samtools variation 338440 338440 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193321.1 samtools variation 406082 406082 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193321.1 samtools variation 419411 419411 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193321.1 samtools variation 425514 425514 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193321.1 samtools variation 425587 425587 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193321.1 samtools variation 427719 427719 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL193321.1 samtools variation 437886 437886 . . . alleles " T G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193321.1 samtools variation 437973 437973 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193321.1 samtools variation 448540 448540 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL193321.1 samtools variation 462744 462744 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL193321.1 samtools variation 463034 463034 . . . alleles " A T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193321.1 samtools variation 693758 693758 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 69 ; known ; N/A GL193321.1 samtools variation 697725 697725 . . . alleles " A G"; frequencies " 0.682926829268293 0.317073170731707"; depth 123 ; unknown ; synonymous GL193321.1 samtools variation 753191 753191 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 58 ; unknown ; N/A GL193322.1 samtools variation 144540 144540 . . . alleles " A G"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; known ; synonymous GL193322.1 samtools variation 200499 200499 . . . alleles " A G"; frequencies " 0.787234042553192 0.212765957446809"; depth 47 ; unknown ; synonymous GL193322.1 samtools variation 207292 207292 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193322.1 samtools variation 272865 272865 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193322.1 samtools variation 378986 378986 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 68 ; unknown ; non-synonymous GL193322.1 samtools variation 379015 379015 . . . alleles " C T"; frequencies " 0.507936507936508 0.492063492063492"; depth 63 ; unknown ; non-synonymous GL193322.1 samtools variation 379289 379289 . . . alleles " G C"; frequencies " 0.722222222222222 0.277777777777778"; depth 54 ; unknown ; synonymous GL193322.1 samtools variation 379391 379391 . . . alleles " C T"; frequencies " 0.798076923076923 0.201923076923077"; depth 104 ; unknown ; synonymous GL193322.1 samtools variation 379421 379421 . . . alleles " T C"; frequencies " 0.394736842105263 0.605263157894737"; depth 114 ; unknown ; synonymous GL193322.1 samtools variation 380858 380858 . . . alleles " C T"; frequencies " 0.56 0.44"; depth 100 ; unknown ; N/A GL193322.1 samtools variation 382453 382453 . . . alleles " A G"; frequencies " 0.753246753246753 0.246753246753247"; depth 77 ; known ; N/A GL193322.1 samtools variation 382999 382999 . . . alleles " A G"; frequencies " 0.292134831460674 0.707865168539326"; depth 89 ; known ; N/A GL193322.1 samtools variation 419854 419854 . . . alleles " C T"; frequencies " 0.781609195402299 0.218390804597701"; depth 87 ; unknown ; N/A GL193322.1 samtools variation 423817 423817 . . . alleles " C T"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; known ; N/A GL193322.1 samtools variation 423996 423996 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 85 ; unknown ; N/A GL193322.1 samtools variation 424278 424278 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 84 ; known ; N/A GL193322.1 samtools variation 424522 424522 . . . alleles " T A"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL193324.1 samtools variation 99455 99455 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; unknown ; N/A GL193324.1 samtools variation 99522 99522 . . . alleles " G T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193324.1 samtools variation 111656 111656 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 70 ; unknown ; synonymous GL193324.1 samtools variation 153043 153043 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193324.1 samtools variation 153867 153867 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL193324.1 samtools variation 154201 154201 . . . alleles " T A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL193324.1 samtools variation 154683 154683 . . . alleles " C T"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL193324.1 samtools variation 155852 155852 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL193324.1 samtools variation 156225 156225 . . . alleles " A G"; frequencies " 0.395348837209302 0.604651162790698"; depth 43 ; unknown ; N/A GL193324.1 samtools variation 214429 214429 . . . alleles " G A"; frequencies " 0.52317880794702 0.47682119205298"; depth 151 ; unknown ; N/A GL193324.1 samtools variation 214693 214693 . . . alleles " A G"; frequencies " 0.579710144927536 0.420289855072464"; depth 138 ; unknown ; N/A GL193324.1 samtools variation 215790 215790 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193324.1 samtools variation 219004 219004 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193324.1 samtools variation 219018 219018 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193324.1 samtools variation 219022 219022 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193324.1 samtools variation 219875 219875 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL193324.1 samtools variation 219882 219882 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193324.1 samtools variation 220474 220474 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193324.1 samtools variation 220499 220499 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193324.1 samtools variation 220985 220985 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193324.1 samtools variation 222055 222055 . . . alleles " A G"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL193324.1 samtools variation 233091 233091 . . . alleles " T C"; frequencies " 0.315315315315315 0.684684684684685"; depth 111 ; unknown ; synonymous GL193324.1 samtools variation 233221 233221 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193324.1 samtools variation 233271 233271 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL193324.1 samtools variation 233413 233413 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193324.1 samtools variation 236145 236145 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193324.1 samtools variation 236937 236937 . . . alleles " C T"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; N/A GL193324.1 samtools variation 245353 245353 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 50 ; unknown ; non-synonymous GL193324.1 samtools variation 252574 252574 . . . alleles " A G"; frequencies " 0.255102040816327 0.744897959183674"; depth 98 ; unknown ; non-synonymous GL193324.1 samtools variation 253072 253072 . . . alleles " C T"; frequencies " 0.343283582089552 0.656716417910448"; depth 67 ; unknown ; non-synonymous GL193324.1 samtools variation 253847 253847 . . . alleles " T C"; frequencies " 0.765432098765432 0.234567901234568"; depth 81 ; unknown ; non-synonymous GL193324.1 samtools variation 285196 285196 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 25 ; known ; non-synonymous GL193324.1 samtools variation 285266 285266 . . . alleles " C T"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; synonymous GL193324.1 samtools variation 285396 285396 . . . alleles " C T"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; known ; N/A GL193324.1 samtools variation 285486 285486 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 70 ; unknown ; N/A GL193324.1 samtools variation 285955 285955 . . . alleles " C T"; frequencies " 0.694915254237288 0.305084745762712"; depth 59 ; unknown ; N/A GL193324.1 samtools variation 314727 314727 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193324.1 samtools variation 331968 331968 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 66 ; unknown ; N/A GL193324.1 samtools variation 332212 332212 . . . alleles " T C"; frequencies " 0.592307692307692 0.407692307692308"; depth 130 ; known ; N/A GL193324.1 samtools variation 409517 409517 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 187 ; known ; synonymous GL193324.1 samtools variation 409595 409595 . . . alleles " A G"; frequencies " 0.568627450980392 0.431372549019608"; depth 102 ; known ; synonymous GL193324.1 samtools variation 410664 410664 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193324.1 samtools variation 410999 410999 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193324.1 samtools variation 411522 411522 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 50 ; known ; N/A GL193324.1 samtools variation 412149 412149 . . . alleles " C T"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; known ; N/A GL193324.1 samtools variation 412163 412163 . . . alleles " C T"; frequencies " 0.425 0.575"; depth 40 ; known ; N/A GL193324.1 samtools variation 413416 413416 . . . alleles " G A"; frequencies " 0.447154471544715 0.552845528455285"; depth 123 ; known ; synonymous GL193324.1 samtools variation 413505 413505 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193324.1 samtools variation 415084 415084 . . . alleles " T G"; frequencies " 0.72 0.28"; depth 25 ; known ; N/A GL193324.1 samtools variation 415427 415427 . . . alleles " A G"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; known ; N/A GL193324.1 samtools variation 415565 415565 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193324.1 samtools variation 415636 415636 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193324.1 samtools variation 415637 415637 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193324.1 samtools variation 415854 415854 . . . alleles " A T"; frequencies " 0.546666666666667 0.453333333333333"; depth 225 ; known ; synonymous GL193324.1 samtools variation 418702 418702 . . . alleles " G A"; frequencies " 0.54140127388535 0.45859872611465"; depth 157 ; known ; N/A GL193324.1 samtools variation 422139 422139 . . . alleles " G A"; frequencies " 0.340659340659341 0.659340659340659"; depth 91 ; known ; N/A GL193326.1 samtools variation 486 486 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193326.1 samtools variation 1968 1968 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193326.1 samtools variation 2736 2736 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193326.1 samtools variation 4578 4578 . . . alleles " C T"; frequencies " 0.317307692307692 0.682692307692308"; depth 104 ; known ; synonymous GL193326.1 samtools variation 64286 64286 . . . alleles " G A"; frequencies " 0.630769230769231 0.369230769230769"; depth 130 ; known ; synonymous GL193326.1 samtools variation 65537 65537 . . . alleles " G C"; frequencies " 0.520325203252033 0.479674796747967"; depth 123 ; unknown ; synonymous GL193326.1 samtools variation 68213 68213 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 76 ; known ; N/A GL193326.1 samtools variation 68445 68445 . . . alleles " C T"; frequencies " 0.489655172413793 0.510344827586207"; depth 145 ; unknown ; N/A GL193326.1 samtools variation 240798 240798 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 42 ; known ; synonymous GL193326.1 samtools variation 251794 251794 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; known ; N/A GL193326.1 samtools variation 252279 252279 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193326.1 samtools variation 252824 252824 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193326.1 samtools variation 252892 252892 . . . alleles " T C"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; known ; N/A GL193326.1 samtools variation 253741 253741 . . . alleles " G A"; frequencies " 0.380952380952381 0.619047619047619"; depth 126 ; unknown ; N/A GL193326.1 samtools variation 253948 253948 . . . alleles " G A"; frequencies " 0.493975903614458 0.506024096385542"; depth 83 ; known ; N/A GL193326.1 samtools variation 254450 254450 . . . alleles " C T"; frequencies " 0.525925925925926 0.474074074074074"; depth 135 ; known ; N/A GL193326.1 samtools variation 254536 254536 . . . alleles " C G"; frequencies " 0.491525423728814 0.508474576271186"; depth 118 ; known ; N/A GL193326.1 samtools variation 254555 254555 . . . alleles " C T"; frequencies " 0.520408163265306 0.479591836734694"; depth 98 ; known ; N/A GL193326.1 samtools variation 254847 254847 . . . alleles " G T"; frequencies " 0.383928571428571 0.616071428571429"; depth 112 ; known ; N/A GL193326.1 samtools variation 257272 257272 . . . alleles " G C"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL193326.1 samtools variation 257451 257451 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193326.1 samtools variation 282549 282549 . . . alleles " G A"; frequencies " 0.663366336633663 0.326732673267327"; depth 101 ; unknown ; synonymous GL193326.1 samtools variation 295926 295926 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193326.1 samtools variation 299443 299443 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 40 ; unknown ; synonymous GL193326.1 samtools variation 302860 302860 . . . alleles " G A"; frequencies " 0.484848484848485 0.515151515151515"; depth 66 ; unknown ; N/A GL193326.1 samtools variation 304043 304043 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193326.1 samtools variation 305407 305407 . . . alleles " G A"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL193326.1 samtools variation 311602 311602 . . . alleles " G A"; frequencies " 0.403225806451613 0.596774193548387"; depth 62 ; known ; non-synonymous GL193326.1 samtools variation 312837 312837 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; known ; N/A GL193326.1 samtools variation 313478 313478 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 24 ; known ; N/A GL193326.1 samtools variation 323508 323508 . . . alleles " C T"; frequencies " 0.354166666666667 0.645833333333333"; depth 48 ; known ; synonymous GL193326.1 samtools variation 336718 336718 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193326.1 samtools variation 355226 355226 . . . alleles " G C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193326.1 samtools variation 355476 355476 . . . alleles " C G"; frequencies " 0.797619047619048 0.202380952380952"; depth 84 ; unknown ; non-synonymous GL193326.1 samtools variation 355776 355776 . . . alleles " G A"; frequencies " 0.496503496503497 0.503496503496504"; depth 143 ; known ; non-synonymous GL193326.1 samtools variation 356668 356668 . . . alleles " T G"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; non-synonymous GL193326.1 samtools variation 356686 356686 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; non-synonymous GL193326.1 samtools variation 357833 357833 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL193326.1 samtools variation 357853 357853 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL193326.1 samtools variation 357867 357867 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL193326.1 samtools variation 367529 367529 . . . alleles " A G"; frequencies " 0.513513513513513 0.486486486486487"; depth 74 ; known ; N/A GL193326.1 samtools variation 455571 455571 . . . alleles " C A"; frequencies " 0.626666666666667 0.373333333333333"; depth 75 ; known ; N/A GL193326.1 samtools variation 455610 455610 . . . alleles " A G"; frequencies " 0.419354838709677 0.580645161290323"; depth 93 ; known ; N/A GL193326.1 samtools variation 456005 456005 . . . alleles " A G"; frequencies " 0.725806451612903 0.274193548387097"; depth 62 ; known ; N/A GL193326.1 samtools variation 456061 456061 . . . alleles " G A"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; known ; N/A GL193326.1 samtools variation 456306 456306 . . . alleles " G A"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; N/A GL193326.1 samtools variation 457503 457503 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193326.1 samtools variation 457510 457510 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193326.1 samtools variation 457922 457922 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193326.1 samtools variation 458336 458336 . . . alleles " A G"; frequencies " 0.204301075268817 0.795698924731183"; depth 93 ; unknown ; synonymous GL193326.1 samtools variation 469788 469788 . . . alleles " G A"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; unknown ; synonymous GL193326.1 samtools variation 471680 471680 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; synonymous GL193326.1 samtools variation 471703 471703 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; synonymous GL193326.1 samtools variation 477554 477554 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 45 ; unknown ; synonymous GL193326.1 samtools variation 681452 681452 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 145 ; unknown ; N/A GL193326.1 samtools variation 681743 681743 . . . alleles " A G"; frequencies " 0.642424242424242 0.357575757575758"; depth 165 ; unknown ; N/A GL193326.1 samtools variation 751762 751762 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL193326.1 samtools variation 751823 751823 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193326.1 samtools variation 752083 752083 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193326.1 samtools variation 752150 752150 . . . alleles " G A"; frequencies " 0.58695652173913 0.41304347826087"; depth 46 ; unknown ; N/A GL193326.1 samtools variation 752201 752201 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193326.1 samtools variation 752282 752282 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193326.1 samtools variation 752547 752547 . . . alleles " G T"; frequencies " 0.648936170212766 0.351063829787234"; depth 94 ; unknown ; synonymous GL193326.1 samtools variation 754428 754428 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193326.1 samtools variation 755135 755135 . . . alleles " A C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL193326.1 samtools variation 755437 755437 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 25 ; unknown ; N/A GL193326.1 samtools variation 759164 759164 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193326.1 samtools variation 759417 759417 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193326.1 samtools variation 761502 761502 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193326.1 samtools variation 761787 761787 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193327.1 samtools variation 305993 305993 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL193330.1 samtools variation 81026 81026 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193330.1 samtools variation 105958 105958 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193330.1 samtools variation 107044 107044 . . . alleles " T G"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL193330.1 samtools variation 121708 121708 . . . alleles " C G"; frequencies " 0.43956043956044 0.56043956043956"; depth 91 ; unknown ; non-synonymous GL193330.1 samtools variation 184095 184095 . . . alleles " A G"; frequencies " 0.596774193548387 0.403225806451613"; depth 62 ; unknown ; N/A GL193330.1 samtools variation 184168 184168 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 42 ; unknown ; N/A GL193331.1 samtools variation 462244 462244 . . . alleles " C T"; frequencies " 0.432835820895522 0.567164179104478"; depth 67 ; known ; synonymous GL193331.1 samtools variation 468526 468526 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 56 ; known ; N/A GL193331.1 samtools variation 468628 468628 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL193331.1 samtools variation 473192 473192 . . . alleles " A G"; frequencies " 0.574468085106383 0.425531914893617"; depth 47 ; unknown ; N/A GL193331.1 samtools variation 532632 532632 . . . alleles " G A"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL193331.1 samtools variation 540321 540321 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; synonymous GL193331.1 samtools variation 637793 637793 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193331.1 samtools variation 639344 639344 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193331.1 samtools variation 640932 640932 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193331.1 samtools variation 642082 642082 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193331.1 samtools variation 642782 642782 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193331.1 samtools variation 643028 643028 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193331.1 samtools variation 645843 645843 . . . alleles " G T"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL193331.1 samtools variation 654303 654303 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193331.1 samtools variation 681056 681056 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193331.1 samtools variation 690122 690122 . . . alleles " G T"; frequencies " 0.584905660377358 0.415094339622642"; depth 53 ; known ; N/A GL193331.1 samtools variation 691394 691394 . . . alleles " A C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL193331.1 samtools variation 691748 691748 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 50 ; known ; N/A GL193331.1 samtools variation 708556 708556 . . . alleles " G T"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL193331.1 samtools variation 708772 708772 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL193331.1 samtools variation 711087 711087 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193331.1 samtools variation 713738 713738 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193331.1 samtools variation 718404 718404 . . . alleles " A G"; frequencies " 0.29585798816568 0.70414201183432"; depth 169 ; known ; N/A GL193331.1 samtools variation 720646 720646 . . . alleles " C T"; frequencies " 0.752688172043011 0.247311827956989"; depth 186 ; unknown ; N/A GL193331.1 samtools variation 721300 721300 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 90 ; unknown ; N/A GL193332.1 samtools variation 211354 211354 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193332.1 samtools variation 212350 212350 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193332.1 samtools variation 212383 212383 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193332.1 samtools variation 233113 233113 . . . alleles " A C"; frequencies " 0.583710407239819 0.416289592760181"; depth 221 ; unknown ; synonymous GL193332.1 samtools variation 236883 236883 . . . alleles " T C"; frequencies " 0.635416666666667 0.364583333333333"; depth 96 ; unknown ; synonymous GL193332.1 samtools variation 288924 288924 . . . alleles " C T"; frequencies " 0.40625 0.59375"; depth 32 ; known ; N/A GL193332.1 samtools variation 313289 313289 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 64 ; unknown ; N/A GL193332.1 samtools variation 329288 329288 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193332.1 samtools variation 329379 329379 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193332.1 samtools variation 329438 329438 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193332.1 samtools variation 329456 329456 . . . alleles " C T"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL193334.1 samtools variation 151155 151155 . . . alleles " G T"; frequencies " 0.586206896551724 0.413793103448276"; depth 58 ; unknown ; N/A GL193334.1 samtools variation 178765 178765 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL193334.1 samtools variation 179237 179237 . . . alleles " G T"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL193334.1 samtools variation 180363 180363 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193334.1 samtools variation 184714 184714 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193334.1 samtools variation 186804 186804 . . . alleles " A G"; frequencies " 0.711538461538462 0.288461538461538"; depth 52 ; unknown ; N/A GL193334.1 samtools variation 191925 191925 . . . alleles " C T"; frequencies " 0.362068965517241 0.637931034482759"; depth 58 ; known ; N/A GL193334.1 samtools variation 192113 192113 . . . alleles " C G"; frequencies " 0.5625 0.4375"; depth 32 ; known ; N/A GL193334.1 samtools variation 192617 192617 . . . alleles " T C"; frequencies " 0.315508021390374 0.684491978609626"; depth 187 ; known ; N/A GL193334.1 samtools variation 206122 206122 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193334.1 samtools variation 209686 209686 . . . alleles " A C"; frequencies " 0.360655737704918 0.639344262295082"; depth 61 ; known ; N/A GL193334.1 samtools variation 210279 210279 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193334.1 samtools variation 210295 210295 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL193334.1 samtools variation 210714 210714 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193334.1 samtools variation 231147 231147 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193334.1 samtools variation 232837 232837 . . . alleles " T C"; frequencies " 0.725146198830409 0.274853801169591"; depth 342 ; unknown ; non-synonymous GL193334.1 samtools variation 239218 239218 . . . alleles " A G"; frequencies " 0.482352941176471 0.517647058823529"; depth 85 ; unknown ; non-synonymous GL193334.1 samtools variation 251440 251440 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL193334.1 samtools variation 275076 275076 . . . alleles " T G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193334.1 samtools variation 278918 278918 . . . alleles " G C"; frequencies " 0.285245901639344 0.714754098360656"; depth 305 ; unknown ; synonymous GL193334.1 samtools variation 278969 278969 . . . alleles " T C"; frequencies " 0.304166666666667 0.695833333333333"; depth 240 ; unknown ; synonymous GL193334.1 samtools variation 283460 283460 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193334.1 samtools variation 297190 297190 . . . alleles " A T"; frequencies " 0.395522388059701 0.597014925373134"; depth 134 ; unknown ; synonymous GL193334.1 samtools variation 309496 309496 . . . alleles " C T"; frequencies " 0.298850574712644 0.701149425287356"; depth 87 ; known ; synonymous GL193334.1 samtools variation 436164 436164 . . . alleles " C G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193334.1 samtools variation 437229 437229 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193334.1 samtools variation 440919 440919 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193334.1 samtools variation 440937 440937 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193334.1 samtools variation 444122 444122 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL193334.1 samtools variation 452164 452164 . . . alleles " C T"; frequencies " 0.776315789473684 0.219298245614035"; depth 228 ; unknown ; synonymous GL193334.1 samtools variation 454815 454815 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193334.1 samtools variation 455000 455000 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193334.1 samtools variation 455024 455024 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193334.1 samtools variation 455196 455196 . . . alleles " A G"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL193334.1 samtools variation 455616 455616 . . . alleles " C T"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; unknown ; N/A GL193334.1 samtools variation 455644 455644 . . . alleles " A G"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL193334.1 samtools variation 455696 455696 . . . alleles " A G"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; unknown ; N/A GL193334.1 samtools variation 456471 456471 . . . alleles " T C"; frequencies " 0.239669421487603 0.760330578512397"; depth 242 ; known ; synonymous GL193334.1 samtools variation 456556 456556 . . . alleles " T G"; frequencies " 0.411255411255411 0.588744588744589"; depth 231 ; unknown ; non-synonymous GL193334.1 samtools variation 458457 458457 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193334.1 samtools variation 458486 458486 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193334.1 samtools variation 459740 459740 . . . alleles " A G"; frequencies " 0.37603305785124 0.62396694214876"; depth 242 ; unknown ; non-synonymous GL193334.1 samtools variation 459789 459789 . . . alleles " C T"; frequencies " 0.773148148148148 0.226851851851852"; depth 216 ; known ; synonymous GL193334.1 samtools variation 459897 459897 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL193334.1 samtools variation 461883 461883 . . . alleles " C T"; frequencies " 0.705035971223022 0.294964028776978"; depth 278 ; unknown ; synonymous GL193334.1 samtools variation 461898 461898 . . . alleles " A G"; frequencies " 0.703703703703704 0.296296296296296"; depth 270 ; unknown ; synonymous GL193334.1 samtools variation 462040 462040 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193334.1 samtools variation 467878 467878 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193334.1 samtools variation 471511 471511 . . . alleles " G A"; frequencies " 0.212624584717608 0.787375415282392"; depth 301 ; unknown ; synonymous GL193334.1 samtools variation 617418 617418 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 72 ; unknown ; synonymous GL193334.1 samtools variation 617448 617448 . . . alleles " T G"; frequencies " 0.375 0.625"; depth 64 ; known ; synonymous GL193334.1 samtools variation 635620 635620 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193334.1 samtools variation 644555 644555 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193334.1 samtools variation 645393 645393 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193334.1 samtools variation 646046 646046 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193334.1 samtools variation 646236 646236 . . . alleles " C A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193334.1 samtools variation 647201 647201 . . . alleles " T C"; frequencies " 0.728 0.272"; depth 125 ; unknown ; N/A GL193334.1 samtools variation 647286 647286 . . . alleles " A G"; frequencies " 0.675925925925926 0.324074074074074"; depth 108 ; unknown ; N/A GL193334.1 samtools variation 647404 647404 . . . alleles " T C"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; known ; N/A GL193334.1 samtools variation 647426 647426 . . . alleles " A G"; frequencies " 0.644067796610169 0.355932203389831"; depth 59 ; unknown ; N/A GL193334.1 samtools variation 647616 647616 . . . alleles " T C"; frequencies " 0.706666666666667 0.293333333333333"; depth 150 ; unknown ; N/A GL193334.1 samtools variation 647850 647850 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 192 ; unknown ; N/A GL193334.1 samtools variation 647875 647875 . . . alleles " T C"; frequencies " 0.661870503597122 0.338129496402878"; depth 139 ; unknown ; N/A GL193334.1 samtools variation 648008 648008 . . . alleles " C T"; frequencies " 0.590361445783133 0.409638554216867"; depth 83 ; unknown ; N/A GL193334.1 samtools variation 648099 648099 . . . alleles " T C"; frequencies " 0.561904761904762 0.438095238095238"; depth 105 ; unknown ; N/A GL193334.1 samtools variation 648106 648106 . . . alleles " G C"; frequencies " 0.549019607843137 0.450980392156863"; depth 102 ; unknown ; N/A GL193334.1 samtools variation 648174 648174 . . . alleles " A G"; frequencies " 0.627118644067797 0.372881355932203"; depth 59 ; unknown ; N/A GL193335.1 samtools variation 13173 13173 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193335.1 samtools variation 13690 13690 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL193335.1 samtools variation 13747 13747 . . . alleles " C G"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL193335.1 samtools variation 17424 17424 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193335.1 samtools variation 18589 18589 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL193335.1 samtools variation 28393 28393 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193335.1 samtools variation 52195 52195 . . . alleles " G T"; frequencies " 0.74 0.26"; depth 550 ; unknown ; N/A GL193335.1 samtools variation 61473 61473 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193335.1 samtools variation 77052 77052 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL193335.1 samtools variation 84515 84515 . . . alleles " T C"; frequencies " 0.230263157894737 0.769736842105263"; depth 152 ; known ; N/A GL193335.1 samtools variation 507471 507471 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; known ; N/A GL193335.1 samtools variation 509155 509155 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 35 ; known ; N/A GL193339.1 samtools variation 352294 352294 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; synonymous GL193339.1 samtools variation 357450 357450 . . . alleles " G A"; frequencies " 0.586666666666667 0.413333333333333"; depth 75 ; known ; synonymous GL193339.1 samtools variation 357747 357747 . . . alleles " C T"; frequencies " 0.512820512820513 0.487179487179487"; depth 39 ; known ; N/A GL193339.1 samtools variation 358083 358083 . . . alleles " T C"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL193339.1 samtools variation 358209 358209 . . . alleles " T C"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; N/A GL193339.1 samtools variation 359110 359110 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 42 ; known ; synonymous GL193339.1 samtools variation 360318 360318 . . . alleles " G C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193339.1 samtools variation 360836 360836 . . . alleles " A G"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL193339.1 samtools variation 363912 363912 . . . alleles " T G"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; non-synonymous GL193339.1 samtools variation 363929 363929 . . . alleles " T A"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; non-synonymous GL193339.1 samtools variation 364462 364462 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL193339.1 samtools variation 364503 364503 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193339.1 samtools variation 367257 367257 . . . alleles " A G"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; known ; synonymous GL193339.1 samtools variation 538548 538548 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193339.1 samtools variation 539654 539654 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193339.1 samtools variation 540389 540389 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL193341.1 samtools variation 75441 75441 . . . alleles " C T"; frequencies " 0.706666666666667 0.293333333333333"; depth 75 ; unknown ; N/A GL193341.1 samtools variation 75743 75743 . . . alleles " G A"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL193341.1 samtools variation 147204 147204 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; synonymous GL193341.1 samtools variation 178488 178488 . . . alleles " G A"; frequencies " 0.462962962962963 0.537037037037037"; depth 54 ; unknown ; synonymous GL193341.1 samtools variation 182405 182405 . . . alleles " T G"; frequencies " 0.444444444444444 0.555555555555556"; depth 99 ; unknown ; non-synonymous GL193341.1 samtools variation 182436 182436 . . . alleles " C T"; frequencies " 0.485294117647059 0.514705882352941"; depth 136 ; unknown ; non-synonymous GL193341.1 samtools variation 187082 187082 . . . alleles " G A"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL193341.1 samtools variation 187420 187420 . . . alleles " C G"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL193341.1 samtools variation 338217 338217 . . . alleles " C G"; frequencies " 0.256410256410256 0.743589743589744"; depth 39 ; unknown ; N/A GL193341.1 samtools variation 338616 338616 . . . alleles " G A"; frequencies " 0.731034482758621 0.268965517241379"; depth 435 ; unknown ; N/A GL193341.1 samtools variation 338627 338627 . . . alleles " T G"; frequencies " 0.713625866050808 0.286374133949192"; depth 433 ; unknown ; N/A GL193341.1 samtools variation 338750 338750 . . . alleles " C T"; frequencies " 0.456989247311828 0.543010752688172"; depth 186 ; unknown ; N/A GL193341.1 samtools variation 351063 351063 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL193341.1 samtools variation 351194 351194 . . . alleles " T C"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; unknown ; N/A GL193341.1 samtools variation 351203 351203 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 42 ; unknown ; N/A GL193341.1 samtools variation 351399 351399 . . . alleles " T G"; frequencies " 0.486486486486487 0.513513513513513"; depth 37 ; unknown ; N/A GL193341.1 samtools variation 355910 355910 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193341.1 samtools variation 362922 362922 . . . alleles " C T"; frequencies " 0.658227848101266 0.341772151898734"; depth 158 ; unknown ; N/A GL193341.1 samtools variation 363674 363674 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193341.1 samtools variation 364176 364176 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193341.1 samtools variation 372235 372235 . . . alleles " C T"; frequencies " 0.549450549450549 0.450549450549451"; depth 91 ; unknown ; synonymous GL193341.1 samtools variation 372632 372632 . . . alleles " T C"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; unknown ; N/A GL193341.1 samtools variation 421045 421045 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193341.1 samtools variation 425259 425259 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL193341.1 samtools variation 427214 427214 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193341.1 samtools variation 432445 432445 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193341.1 samtools variation 433593 433593 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL193341.1 samtools variation 435473 435473 . . . alleles " T A"; frequencies " 0.382978723404255 0.617021276595745"; depth 47 ; unknown ; N/A GL193341.1 samtools variation 638734 638734 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 57 ; unknown ; synonymous GL193341.1 samtools variation 641611 641611 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193341.1 samtools variation 641849 641849 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193341.1 samtools variation 642828 642828 . . . alleles " C T"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; synonymous GL193341.1 samtools variation 643016 643016 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193341.1 samtools variation 645330 645330 . . . alleles " C A"; frequencies " 0.523809523809524 0.476190476190476"; depth 42 ; unknown ; N/A GL193341.1 samtools variation 645991 645991 . . . alleles " T C"; frequencies " 0.685483870967742 0.314516129032258"; depth 124 ; unknown ; N/A GL193341.1 samtools variation 646243 646243 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 60 ; unknown ; N/A GL193341.1 samtools variation 646299 646299 . . . alleles " G C"; frequencies " 0.483870967741935 0.516129032258065"; depth 62 ; unknown ; N/A GL193341.1 samtools variation 663448 663448 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193341.1 samtools variation 691444 691444 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL193341.1 samtools variation 691583 691583 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 50 ; unknown ; N/A GL193341.1 samtools variation 691861 691861 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193341.1 samtools variation 692334 692334 . . . alleles " C T"; frequencies " 0.365853658536585 0.634146341463415"; depth 41 ; unknown ; N/A GL193341.1 samtools variation 694478 694478 . . . alleles " T A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193341.1 samtools variation 694484 694484 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193341.1 samtools variation 695021 695021 . . . alleles " T G"; frequencies " 0.336448598130841 0.663551401869159"; depth 107 ; unknown ; N/A GL193341.1 samtools variation 695148 695148 . . . alleles " T C"; frequencies " 0.781609195402299 0.218390804597701"; depth 87 ; unknown ; non-synonymous GL193341.1 samtools variation 696787 696787 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193341.1 samtools variation 697097 697097 . . . alleles " G A"; frequencies " 0.490566037735849 0.509433962264151"; depth 53 ; unknown ; synonymous GL193341.1 samtools variation 699874 699874 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 140 ; unknown ; synonymous GL193341.1 samtools variation 699899 699899 . . . alleles " A G"; frequencies " 0.540540540540541 0.459459459459459"; depth 111 ; unknown ; non-synonymous GL193341.1 samtools variation 707980 707980 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; non-synonymous GL193341.1 samtools variation 712122 712122 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193341.1 samtools variation 712248 712248 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193341.1 samtools variation 720527 720527 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; N/A GL193341.1 samtools variation 727421 727421 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193341.1 samtools variation 728218 728218 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; unknown ; N/A GL193341.1 samtools variation 728546 728546 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL193341.1 samtools variation 728665 728665 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 20 ; unknown ; non-synonymous GL193341.1 samtools variation 729934 729934 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; unknown ; non-synonymous GL193341.1 samtools variation 730671 730671 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; unknown ; synonymous GL193341.1 samtools variation 730690 730690 . . . alleles " T C"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; non-synonymous GL193341.1 samtools variation 733284 733284 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; synonymous GL193341.1 samtools variation 741426 741426 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193341.1 samtools variation 741531 741531 . . . alleles " A C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; non-synonymous GL193341.1 samtools variation 741642 741642 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 78 ; unknown ; synonymous GL193341.1 samtools variation 743530 743530 . . . alleles " T G"; frequencies " 0.45 0.55"; depth 20 ; unknown ; synonymous GL193341.1 samtools variation 743586 743586 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; known ; non-synonymous GL193341.1 samtools variation 743674 743674 . . . alleles " C T"; frequencies " 0.716981132075472 0.283018867924528"; depth 106 ; unknown ; synonymous GL193341.1 samtools variation 744206 744206 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 56 ; unknown ; synonymous GL193341.1 samtools variation 744230 744230 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 25 ; unknown ; non-synonymous GL193341.1 samtools variation 744440 744440 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; synonymous GL193341.1 samtools variation 744455 744455 . . . alleles " G A"; frequencies " 0.68 0.28"; depth 25 ; unknown ; synonymous GL193341.1 samtools variation 746379 746379 . . . alleles " C T"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; known ; non-synonymous GL193342.1 samtools variation 384919 384919 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 112 ; known ; synonymous GL193342.1 samtools variation 391949 391949 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193342.1 samtools variation 403474 403474 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193342.1 samtools variation 404344 404344 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193342.1 samtools variation 405303 405303 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193342.1 samtools variation 413496 413496 . . . alleles " G A"; frequencies " 0.74390243902439 0.25609756097561"; depth 82 ; unknown ; N/A GL193342.1 samtools variation 416568 416568 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193342.1 samtools variation 417608 417608 . . . alleles " G T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193342.1 samtools variation 421652 421652 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193342.1 samtools variation 421821 421821 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193342.1 samtools variation 421903 421903 . . . alleles " G A"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL193342.1 samtools variation 423563 423563 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193342.1 samtools variation 427723 427723 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193342.1 samtools variation 429438 429438 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL193342.1 samtools variation 429481 429481 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL193342.1 samtools variation 429808 429808 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193342.1 samtools variation 432081 432081 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193342.1 samtools variation 432469 432469 . . . alleles " G A"; frequencies " 0.614035087719298 0.385964912280702"; depth 57 ; unknown ; N/A GL193342.1 samtools variation 432660 432660 . . . alleles " G A"; frequencies " 0.721238938053097 0.278761061946903"; depth 226 ; unknown ; N/A GL193342.1 samtools variation 432763 432763 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 185 ; unknown ; N/A GL193342.1 samtools variation 432900 432900 . . . alleles " A G"; frequencies " 0.517241379310345 0.482758620689655"; depth 58 ; unknown ; N/A GL193342.1 samtools variation 433502 433502 . . . alleles " T C"; frequencies " 0.432203389830508 0.567796610169492"; depth 118 ; unknown ; N/A GL193342.1 samtools variation 434173 434173 . . . alleles " T G"; frequencies " 0.73015873015873 0.26984126984127"; depth 63 ; unknown ; N/A GL193342.1 samtools variation 434603 434603 . . . alleles " T C"; frequencies " 0.666666666666667 0.3"; depth 30 ; unknown ; N/A GL193342.1 samtools variation 435192 435192 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL193342.1 samtools variation 435575 435575 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193342.1 samtools variation 435674 435674 . . . alleles " C G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193342.1 samtools variation 437626 437626 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; N/A GL193342.1 samtools variation 437797 437797 . . . alleles " A G"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; unknown ; N/A GL193342.1 samtools variation 437841 437841 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 40 ; unknown ; N/A GL193342.1 samtools variation 437859 437859 . . . alleles " C T"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL193342.1 samtools variation 437949 437949 . . . alleles " G T"; frequencies " 0.681818181818182 0.318181818181818"; depth 44 ; unknown ; N/A GL193342.1 samtools variation 445228 445228 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193342.1 samtools variation 457629 457629 . . . alleles " G A"; frequencies " 0.622641509433962 0.377358490566038"; depth 53 ; unknown ; synonymous GL193342.1 samtools variation 457964 457964 . . . alleles " C T"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; non-synonymous GL193342.1 samtools variation 458190 458190 . . . alleles " C G"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; synonymous GL193342.1 samtools variation 501358 501358 . . . alleles " A G"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; unknown ; N/A GL193342.1 samtools variation 504102 504102 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL193342.1 samtools variation 504713 504713 . . . alleles " A G"; frequencies " 0.527131782945736 0.472868217054264"; depth 129 ; unknown ; N/A GL193342.1 samtools variation 504743 504743 . . . alleles " G A"; frequencies " 0.41875 0.58125"; depth 160 ; unknown ; N/A GL193342.1 samtools variation 505273 505273 . . . alleles " G A"; frequencies " 0.741721854304636 0.258278145695364"; depth 151 ; unknown ; N/A GL193342.1 samtools variation 511440 511440 . . . alleles " C A"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL193342.1 samtools variation 516372 516372 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193342.1 samtools variation 516614 516614 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193342.1 samtools variation 529225 529225 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; known ; N/A GL193342.1 samtools variation 529332 529332 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193342.1 samtools variation 530797 530797 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193342.1 samtools variation 537746 537746 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193342.1 samtools variation 541152 541152 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 45 ; known ; N/A GL193342.1 samtools variation 541524 541524 . . . alleles " G C"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL193342.1 samtools variation 543184 543184 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193342.1 samtools variation 543211 543211 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193342.1 samtools variation 562912 562912 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193342.1 samtools variation 596956 596956 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; N/A GL193342.1 samtools variation 597174 597174 . . . alleles " A G"; frequencies " 0.283018867924528 0.716981132075472"; depth 53 ; unknown ; N/A GL193342.1 samtools variation 610522 610522 . . . alleles " T G"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL193342.1 samtools variation 613509 613509 . . . alleles " C A"; frequencies " 0.698961937716263 0.301038062283737"; depth 289 ; unknown ; N/A GL193342.1 samtools variation 614336 614336 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 78 ; unknown ; N/A GL193342.1 samtools variation 614485 614485 . . . alleles " C T"; frequencies " 0.783505154639175 0.216494845360825"; depth 97 ; unknown ; N/A GL193342.1 samtools variation 614554 614554 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 87 ; unknown ; N/A GL193342.1 samtools variation 614856 614856 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL193342.1 samtools variation 619155 619155 . . . alleles " A G"; frequencies " 0.719626168224299 0.280373831775701"; depth 107 ; unknown ; N/A GL193342.1 samtools variation 619698 619698 . . . alleles " C T"; frequencies " 0.797101449275362 0.202898550724638"; depth 69 ; unknown ; synonymous GL193342.1 samtools variation 624930 624930 . . . alleles " G A"; frequencies " 0.747474747474748 0.252525252525253"; depth 99 ; unknown ; synonymous GL193342.1 samtools variation 628005 628005 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193342.1 samtools variation 631462 631462 . . . alleles " A G"; frequencies " 0.705714285714286 0.294285714285714"; depth 350 ; unknown ; N/A GL193342.1 samtools variation 631711 631711 . . . alleles " T C"; frequencies " 0.765765765765766 0.22972972972973"; depth 222 ; unknown ; N/A GL193342.1 samtools variation 639248 639248 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; synonymous GL193342.1 samtools variation 643660 643660 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; synonymous GL193342.1 samtools variation 713506 713506 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193342.1 samtools variation 741228 741228 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 10 ; known ; non-synonymous GL193343.1 samtools variation 1784 1784 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193343.1 samtools variation 1812 1812 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193343.1 samtools variation 3915 3915 . . . alleles " G T"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; known ; N/A GL193343.1 samtools variation 4080 4080 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193343.1 samtools variation 7610 7610 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193343.1 samtools variation 20405 20405 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193343.1 samtools variation 29950 29950 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193343.1 samtools variation 52630 52630 . . . alleles " C G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193343.1 samtools variation 53690 53690 . . . alleles " G A"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL193343.1 samtools variation 56029 56029 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193343.1 samtools variation 56057 56057 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193343.1 samtools variation 69678 69678 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193343.1 samtools variation 70281 70281 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193343.1 samtools variation 71377 71377 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193343.1 samtools variation 71541 71541 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193343.1 samtools variation 76530 76530 . . . alleles " A G"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL193343.1 samtools variation 90734 90734 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193343.1 samtools variation 98520 98520 . . . alleles " T A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193343.1 samtools variation 101245 101245 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL193343.1 samtools variation 111897 111897 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193343.1 samtools variation 113795 113795 . . . alleles " G T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193343.1 samtools variation 114002 114002 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193343.1 samtools variation 143292 143292 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL193343.1 samtools variation 157051 157051 . . . alleles " C T"; frequencies " 0.662650602409639 0.337349397590361"; depth 83 ; unknown ; synonymous GL193343.1 samtools variation 164557 164557 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193343.1 samtools variation 166139 166139 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193343.1 samtools variation 167707 167707 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193343.1 samtools variation 172095 172095 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL193343.1 samtools variation 172521 172521 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193343.1 samtools variation 172994 172994 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; known ; N/A GL193343.1 samtools variation 182367 182367 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193343.1 samtools variation 187305 187305 . . . alleles " C T"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL193343.1 samtools variation 191486 191486 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL193343.1 samtools variation 193857 193857 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193343.1 samtools variation 204821 204821 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL193343.1 samtools variation 205898 205898 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL193343.1 samtools variation 232142 232142 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; known ; N/A GL193343.1 samtools variation 237951 237951 . . . alleles " G C"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; N/A GL193343.1 samtools variation 256545 256545 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL193343.1 samtools variation 256902 256902 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193343.1 samtools variation 307152 307152 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; synonymous GL193343.1 samtools variation 307383 307383 . . . alleles " G A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; synonymous GL193343.1 samtools variation 307982 307982 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193343.1 samtools variation 345583 345583 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL193344.1 samtools variation 5003 5003 . . . alleles " T A"; frequencies " 0.323321554770318 0.676678445229682"; depth 566 ; unknown ; N/A GL193344.1 samtools variation 7613 7613 . . . alleles " T A"; frequencies " 0.224137931034483 0.775862068965517"; depth 58 ; unknown ; N/A GL193344.1 samtools variation 7982 7982 . . . alleles " G A"; frequencies " 0.34020618556701 0.65979381443299"; depth 97 ; unknown ; N/A GL193344.1 samtools variation 8162 8162 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL193344.1 samtools variation 9469 9469 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 52 ; unknown ; N/A GL193344.1 samtools variation 10560 10560 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193344.1 samtools variation 10862 10862 . . . alleles " G A"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL193344.1 samtools variation 14553 14553 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL193344.1 samtools variation 15696 15696 . . . alleles " A T"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; unknown ; N/A GL193344.1 samtools variation 16646 16646 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 34 ; unknown ; N/A GL193344.1 samtools variation 17549 17549 . . . alleles " A G"; frequencies " 0.730769230769231 0.269230769230769"; depth 52 ; unknown ; N/A GL193344.1 samtools variation 19127 19127 . . . alleles " A G"; frequencies " 0.425 0.575"; depth 40 ; unknown ; N/A GL193344.1 samtools variation 19134 19134 . . . alleles " G A"; frequencies " 0.45 0.55"; depth 40 ; unknown ; N/A GL193344.1 samtools variation 19966 19966 . . . alleles " A G"; frequencies " 0.28 0.72"; depth 25 ; unknown ; N/A GL193344.1 samtools variation 19991 19991 . . . alleles " A G"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; unknown ; N/A GL193345.1 samtools variation 26160 26160 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193345.1 samtools variation 55976 55976 . . . alleles " G A"; frequencies " 0.701219512195122 0.298780487804878"; depth 164 ; unknown ; synonymous GL193345.1 samtools variation 61457 61457 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193345.1 samtools variation 69274 69274 . . . alleles " A T"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL193345.1 samtools variation 69972 69972 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193345.1 samtools variation 257584 257584 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; unknown ; N/A GL193345.1 samtools variation 257597 257597 . . . alleles " T G"; frequencies " 0.566666666666667 0.433333333333333"; depth 90 ; unknown ; N/A GL193345.1 samtools variation 259926 259926 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; non-synonymous GL193345.1 samtools variation 272689 272689 . . . alleles " T C"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; unknown ; non-synonymous GL193346.1 samtools variation 523507 523507 . . . alleles " C G"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL193346.1 samtools variation 534103 534103 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; unknown ; N/A GL193346.1 samtools variation 561183 561183 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193346.1 samtools variation 561908 561908 . . . alleles " T G"; frequencies " 0.709090909090909 0.290909090909091"; depth 110 ; unknown ; N/A GL193346.1 samtools variation 561931 561931 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 105 ; unknown ; N/A GL193346.1 samtools variation 596952 596952 . . . alleles " C T"; frequencies " 0.795497185741088 0.204502814258912"; depth 533 ; unknown ; synonymous GL193346.1 samtools variation 601027 601027 . . . alleles " C T"; frequencies " 0.346666666666667 0.653333333333333"; depth 75 ; unknown ; N/A GL193346.1 samtools variation 601387 601387 . . . alleles " C T"; frequencies " 0.590909090909091 0.409090909090909"; depth 44 ; unknown ; N/A GL193346.1 samtools variation 601618 601618 . . . alleles " C T"; frequencies " 0.729032258064516 0.270967741935484"; depth 155 ; unknown ; N/A GL193346.1 samtools variation 605932 605932 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193346.1 samtools variation 607614 607614 . . . alleles " T C"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; unknown ; N/A GL193346.1 samtools variation 607652 607652 . . . alleles " C A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193346.1 samtools variation 607677 607677 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 36 ; unknown ; N/A GL193346.1 samtools variation 610771 610771 . . . alleles " C T"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; N/A GL193346.1 samtools variation 610816 610816 . . . alleles " C T"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; N/A GL193346.1 samtools variation 612226 612226 . . . alleles " G A"; frequencies " 0.481400437636761 0.518599562363239"; depth 457 ; unknown ; synonymous GL193346.1 samtools variation 614614 614614 . . . alleles " T C"; frequencies " 0.483940042826552 0.516059957173448"; depth 467 ; unknown ; synonymous GL193346.1 samtools variation 621333 621333 . . . alleles " T C"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL193346.1 samtools variation 624549 624549 . . . alleles " G A"; frequencies " 0.745410036719706 0.254589963280294"; depth 817 ; unknown ; synonymous GL193346.1 samtools variation 627745 627745 . . . alleles " A C"; frequencies " 0.764705882352941 0.215686274509804"; depth 51 ; unknown ; N/A GL193346.1 samtools variation 630796 630796 . . . alleles " A G"; frequencies " 0.700688073394495 0.299311926605505"; depth 872 ; unknown ; synonymous GL193346.1 samtools variation 631082 631082 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193346.1 samtools variation 631749 631749 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193346.1 samtools variation 632289 632289 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193346.1 samtools variation 632935 632935 . . . alleles " G A"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL193346.1 samtools variation 637018 637018 . . . alleles " T C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193346.1 samtools variation 637104 637104 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193346.1 samtools variation 657836 657836 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 54 ; unknown ; N/A GL193346.1 samtools variation 658307 658307 . . . alleles " C T"; frequencies " 0.41747572815534 0.58252427184466"; depth 103 ; unknown ; N/A GL193346.1 samtools variation 658544 658544 . . . alleles " C T"; frequencies " 0.699029126213592 0.300970873786408"; depth 103 ; unknown ; N/A GL193348.1 samtools variation 123521 123521 . . . alleles " T C"; frequencies " 0.222307104660046 0.776928953399542"; depth 1309 ; known ; non-synonymous GL193348.1 samtools variation 165275 165275 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193348.1 samtools variation 166335 166335 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193348.1 samtools variation 191854 191854 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL193348.1 samtools variation 272548 272548 . . . alleles " C T"; frequencies " 0.21875 0.78125"; depth 128 ; known ; N/A GL193348.1 samtools variation 277385 277385 . . . alleles " C T"; frequencies " 0.776859504132231 0.223140495867769"; depth 121 ; unknown ; non-synonymous GL193348.1 samtools variation 277398 277398 . . . alleles " G A"; frequencies " 0.775 0.225"; depth 160 ; unknown ; synonymous GL193348.1 samtools variation 340429 340429 . . . alleles " A C"; frequencies " 0.277777777777778 0.722222222222222"; depth 36 ; known ; N/A GL193348.1 samtools variation 342759 342759 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193348.1 samtools variation 445057 445057 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; synonymous GL193348.1 samtools variation 501803 501803 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; non-synonymous GL193348.1 samtools variation 528116 528116 . . . alleles " A G"; frequencies " 0.52 0.48"; depth 25 ; unknown ; synonymous GL193349.1 samtools variation 68485 68485 . . . alleles " C T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL193349.1 samtools variation 306557 306557 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; synonymous GL193349.1 samtools variation 309537 309537 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; synonymous GL193349.1 samtools variation 310193 310193 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; non-synonymous GL193349.1 samtools variation 310392 310392 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; synonymous GL193349.1 samtools variation 310617 310617 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; synonymous GL193349.1 samtools variation 310714 310714 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; non-synonymous GL193349.1 samtools variation 310851 310851 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; synonymous GL193349.1 samtools variation 310885 310885 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; non-synonymous GL193349.1 samtools variation 310921 310921 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; non-synonymous GL193349.1 samtools variation 359974 359974 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; non-synonymous GL193349.1 samtools variation 360239 360239 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; known ; N/A GL193349.1 samtools variation 360607 360607 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; known ; N/A GL193349.1 samtools variation 363958 363958 . . . alleles " C A"; frequencies " 0.733870967741935 0.266129032258065"; depth 124 ; known ; N/A GL193349.1 samtools variation 675322 675322 . . . alleles " G A"; frequencies " 0.755905511811024 0.244094488188976"; depth 127 ; known ; N/A GL193351.1 samtools variation 299133 299133 . . . alleles " T C"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; non-synonymous GL193351.1 samtools variation 353144 353144 . . . alleles " A T"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; known ; N/A GL193351.1 samtools variation 353290 353290 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL193351.1 samtools variation 353382 353382 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL193351.1 samtools variation 403705 403705 . . . alleles " G T"; frequencies " 0.592233009708738 0.407766990291262"; depth 103 ; unknown ; synonymous GL193352.1 samtools variation 539238 539238 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; synonymous GL193352.1 samtools variation 681283 681283 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193352.1 samtools variation 685048 685048 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193352.1 samtools variation 689330 689330 . . . alleles " G A"; frequencies " 0.693160813308688 0.306839186691312"; depth 541 ; unknown ; N/A GL193352.1 samtools variation 692450 692450 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 95 ; unknown ; N/A GL193352.1 samtools variation 696280 696280 . . . alleles " G T"; frequencies " 0.707920792079208 0.292079207920792"; depth 202 ; unknown ; non-synonymous GL193352.1 samtools variation 715836 715836 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193353.1 samtools variation 14879 14879 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193353.1 samtools variation 15186 15186 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193353.1 samtools variation 15198 15198 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193353.1 samtools variation 15987 15987 . . . alleles " C T"; frequencies " 0.52156862745098 0.47843137254902"; depth 255 ; unknown ; synonymous GL193353.1 samtools variation 16390 16390 . . . alleles " A T"; frequencies " 0.507042253521127 0.48943661971831"; depth 284 ; unknown ; synonymous GL193353.1 samtools variation 16453 16453 . . . alleles " A G"; frequencies " 0.54228855721393 0.45771144278607"; depth 201 ; unknown ; synonymous GL193353.1 samtools variation 16596 16596 . . . alleles " A G"; frequencies " 0.339285714285714 0.660714285714286"; depth 56 ; unknown ; N/A GL193353.1 samtools variation 17398 17398 . . . alleles " G T"; frequencies " 0.475206611570248 0.524793388429752"; depth 484 ; unknown ; synonymous GL193353.1 samtools variation 20993 20993 . . . alleles " C G"; frequencies " 0.451282051282051 0.548717948717949"; depth 195 ; unknown ; N/A GL193353.1 samtools variation 20994 20994 . . . alleles " A G"; frequencies " 0.459183673469388 0.540816326530612"; depth 196 ; unknown ; N/A GL193353.1 samtools variation 21110 21110 . . . alleles " T C"; frequencies " 0.443243243243243 0.556756756756757"; depth 555 ; unknown ; N/A GL193353.1 samtools variation 21130 21130 . . . alleles " A G"; frequencies " 0.431906614785992 0.568093385214008"; depth 514 ; unknown ; N/A GL193353.1 samtools variation 21416 21416 . . . alleles " G A"; frequencies " 0.361930294906166 0.638069705093834"; depth 373 ; unknown ; N/A GL193353.1 samtools variation 21634 21634 . . . alleles " G A"; frequencies " 0.702127659574468 0.297872340425532"; depth 94 ; unknown ; N/A GL193353.1 samtools variation 39954 39954 . . . alleles " C T"; frequencies " 0.670454545454545 0.329545454545455"; depth 88 ; unknown ; synonymous GL193353.1 samtools variation 40023 40023 . . . alleles " G A"; frequencies " 0.516666666666667 0.483333333333333"; depth 120 ; unknown ; synonymous GL193353.1 samtools variation 42652 42652 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193353.1 samtools variation 42722 42722 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL193353.1 samtools variation 43826 43826 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 240 ; unknown ; non-synonymous GL193353.1 samtools variation 43846 43846 . . . alleles " G A"; frequencies " 0.626459143968872 0.373540856031128"; depth 257 ; unknown ; synonymous GL193353.1 samtools variation 43957 43957 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193353.1 samtools variation 44642 44642 . . . alleles " T C"; frequencies " 0.65530303030303 0.34469696969697"; depth 264 ; unknown ; synonymous GL193353.1 samtools variation 44651 44651 . . . alleles " T C"; frequencies " 0.656826568265683 0.343173431734317"; depth 271 ; unknown ; synonymous GL193353.1 samtools variation 45302 45302 . . . alleles " C T"; frequencies " 0.705 0.295"; depth 200 ; unknown ; synonymous GL193353.1 samtools variation 56683 56683 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193353.1 samtools variation 56800 56800 . . . alleles " T G"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL193353.1 samtools variation 57490 57490 . . . alleles " T A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193353.1 samtools variation 57509 57509 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193353.1 samtools variation 58519 58519 . . . alleles " C T"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL193353.1 samtools variation 59985 59985 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193353.1 samtools variation 60432 60432 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193353.1 samtools variation 60590 60590 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193353.1 samtools variation 60646 60646 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL193353.1 samtools variation 61298 61298 . . . alleles " T C"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; unknown ; N/A GL193353.1 samtools variation 61513 61513 . . . alleles " C T"; frequencies " 0.7109375 0.2890625"; depth 128 ; unknown ; synonymous GL193353.1 samtools variation 61531 61531 . . . alleles " A G"; frequencies " 0.630057803468208 0.369942196531792"; depth 173 ; unknown ; synonymous GL193353.1 samtools variation 61637 61637 . . . alleles " G A"; frequencies " 0.509803921568627 0.490196078431373"; depth 51 ; unknown ; N/A GL193353.1 samtools variation 61751 61751 . . . alleles " T A"; frequencies " 0.679245283018868 0.320754716981132"; depth 159 ; unknown ; N/A GL193353.1 samtools variation 61805 61805 . . . alleles " G A"; frequencies " 0.593886462882096 0.406113537117904"; depth 229 ; unknown ; N/A GL193353.1 samtools variation 61876 61876 . . . alleles " G A"; frequencies " 0.731707317073171 0.268292682926829"; depth 123 ; unknown ; N/A GL193353.1 samtools variation 310264 310264 . . . alleles " T G"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL193353.1 samtools variation 310287 310287 . . . alleles " T C"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; known ; N/A GL193353.1 samtools variation 310537 310537 . . . alleles " A C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193353.1 samtools variation 310786 310786 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193353.1 samtools variation 311186 311186 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193353.1 samtools variation 311381 311381 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; known ; N/A GL193353.1 samtools variation 311437 311437 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL193353.1 samtools variation 312191 312191 . . . alleles " C T"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; known ; N/A GL193353.1 samtools variation 312216 312216 . . . alleles " T C"; frequencies " 0.333333333333333 0.636363636363636"; depth 33 ; known ; N/A GL193353.1 samtools variation 312229 312229 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 38 ; known ; N/A GL193353.1 samtools variation 312382 312382 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL193353.1 samtools variation 313039 313039 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 30 ; known ; N/A GL193353.1 samtools variation 313130 313130 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL193353.1 samtools variation 313604 313604 . . . alleles " G A"; frequencies " 0.472222222222222 0.527777777777778"; depth 36 ; unknown ; synonymous GL193353.1 samtools variation 313676 313676 . . . alleles " C G"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; known ; synonymous GL193353.1 samtools variation 313985 313985 . . . alleles " G A"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; known ; synonymous GL193353.1 samtools variation 314057 314057 . . . alleles " G A"; frequencies " 0.358974358974359 0.641025641025641"; depth 39 ; known ; synonymous GL193353.1 samtools variation 325627 325627 . . . alleles " G A"; frequencies " 0.635838150289017 0.364161849710983"; depth 346 ; unknown ; N/A GL193353.1 samtools variation 326436 326436 . . . alleles " G A"; frequencies " 0.565217391304348 0.434782608695652"; depth 92 ; unknown ; N/A GL193353.1 samtools variation 326780 326780 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 46 ; unknown ; N/A GL193353.1 samtools variation 326903 326903 . . . alleles " C G"; frequencies " 0.657142857142857 0.342857142857143"; depth 105 ; unknown ; N/A GL193353.1 samtools variation 327877 327877 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; unknown ; N/A GL193353.1 samtools variation 328340 328340 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 42 ; known ; N/A GL193353.1 samtools variation 328447 328447 . . . alleles " G C"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL193353.1 samtools variation 328728 328728 . . . alleles " A C"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; unknown ; N/A GL193353.1 samtools variation 328729 328729 . . . alleles " T C"; frequencies " 0.40625 0.59375"; depth 32 ; unknown ; N/A GL193353.1 samtools variation 329061 329061 . . . alleles " G A"; frequencies " 0.66 0.34"; depth 50 ; known ; N/A GL193353.1 samtools variation 329103 329103 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 72 ; known ; N/A GL193353.1 samtools variation 329131 329131 . . . alleles " C T"; frequencies " 0.617283950617284 0.382716049382716"; depth 81 ; unknown ; N/A GL193353.1 samtools variation 329205 329205 . . . alleles " A G"; frequencies " 0.657142857142857 0.342857142857143"; depth 70 ; known ; N/A GL193353.1 samtools variation 329230 329230 . . . alleles " G A"; frequencies " 0.60655737704918 0.39344262295082"; depth 61 ; known ; N/A GL193353.1 samtools variation 329270 329270 . . . alleles " A G"; frequencies " 0.346938775510204 0.653061224489796"; depth 49 ; known ; N/A GL193353.1 samtools variation 329352 329352 . . . alleles " A G"; frequencies " 0.697247706422018 0.302752293577982"; depth 109 ; known ; N/A GL193353.1 samtools variation 329384 329384 . . . alleles " A G"; frequencies " 0.41304347826087 0.58695652173913"; depth 138 ; known ; N/A GL193353.1 samtools variation 344621 344621 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 52 ; known ; N/A GL193353.1 samtools variation 349031 349031 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193353.1 samtools variation 349038 349038 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193353.1 samtools variation 352515 352515 . . . alleles " G A"; frequencies " 0.36231884057971 0.63768115942029"; depth 138 ; known ; N/A GL193353.1 samtools variation 354092 354092 . . . alleles " T C"; frequencies " 0.304347826086957 0.695652173913043"; depth 46 ; known ; N/A GL193353.1 samtools variation 381457 381457 . . . alleles " T A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL193353.1 samtools variation 383761 383761 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193353.1 samtools variation 387628 387628 . . . alleles " C T"; frequencies " 0.52112676056338 0.47887323943662"; depth 71 ; unknown ; N/A GL193353.1 samtools variation 387786 387786 . . . alleles " G A"; frequencies " 0.298245614035088 0.701754385964912"; depth 57 ; unknown ; N/A GL193353.1 samtools variation 388045 388045 . . . alleles " T C"; frequencies " 0.39344262295082 0.60655737704918"; depth 61 ; unknown ; N/A GL193353.1 samtools variation 397593 397593 . . . alleles " A G"; frequencies " 0.520833333333333 0.479166666666667"; depth 48 ; unknown ; synonymous GL193353.1 samtools variation 397613 397613 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 48 ; unknown ; non-synonymous GL193353.1 samtools variation 397665 397665 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; synonymous GL193353.1 samtools variation 398738 398738 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193353.1 samtools variation 399973 399973 . . . alleles " C T"; frequencies " 0.729166666666667 0.270833333333333"; depth 96 ; unknown ; synonymous GL193353.1 samtools variation 400497 400497 . . . alleles " G A"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL193353.1 samtools variation 401116 401116 . . . alleles " G C"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL193353.1 samtools variation 407481 407481 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193353.1 samtools variation 497442 497442 . . . alleles " C G"; frequencies " 0.511111111111111 0.488888888888889"; depth 45 ; unknown ; non-synonymous GL193353.1 samtools variation 498341 498341 . . . alleles " T C"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; synonymous GL193353.1 samtools variation 502746 502746 . . . alleles " C A"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; unknown ; N/A GL193353.1 samtools variation 502951 502951 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; unknown ; N/A GL193353.1 samtools variation 503464 503464 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 66 ; unknown ; N/A GL193353.1 samtools variation 590647 590647 . . . alleles " G A"; frequencies " 0.441666666666667 0.558333333333333"; depth 120 ; known ; N/A GL193353.1 samtools variation 590690 590690 . . . alleles " G A"; frequencies " 0.668508287292818 0.331491712707182"; depth 181 ; unknown ; N/A GL193353.1 samtools variation 600113 600113 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193353.1 samtools variation 616242 616242 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193353.1 samtools variation 616321 616321 . . . alleles " A C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193353.1 samtools variation 699902 699902 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193353.1 samtools variation 700864 700864 . . . alleles " T C"; frequencies " 0.216216216216216 0.783783783783784"; depth 74 ; known ; N/A GL193353.1 samtools variation 701998 701998 . . . alleles " A C"; frequencies " 0.708333333333333 0.291666666666667"; depth 48 ; unknown ; N/A GL193353.1 samtools variation 702176 702176 . . . alleles " G A"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; unknown ; N/A GL193353.1 samtools variation 712351 712351 . . . alleles " G A"; frequencies " 0.518987341772152 0.481012658227848"; depth 79 ; known ; synonymous GL193354.1 samtools variation 13890 13890 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193354.1 samtools variation 13954 13954 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193354.1 samtools variation 14447 14447 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL193354.1 samtools variation 14834 14834 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL193354.1 samtools variation 15644 15644 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193354.1 samtools variation 40145 40145 . . . alleles " T A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193354.1 samtools variation 45895 45895 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL193354.1 samtools variation 45938 45938 . . . alleles " C G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193358.1 samtools variation 39769 39769 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193358.1 samtools variation 41897 41897 . . . alleles " G A"; frequencies " 0.704918032786885 0.295081967213115"; depth 61 ; unknown ; synonymous GL193358.1 samtools variation 48839 48839 . . . alleles " G C"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; non-synonymous GL193358.1 samtools variation 81309 81309 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193358.1 samtools variation 81476 81476 . . . alleles " A G"; frequencies " 0.28125 0.71875"; depth 32 ; known ; N/A GL193358.1 samtools variation 87659 87659 . . . alleles " T C"; frequencies " 0.631970260223048 0.368029739776952"; depth 269 ; known ; N/A GL193358.1 samtools variation 95331 95331 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL193358.1 samtools variation 118649 118649 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL193358.1 samtools variation 118672 118672 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL193358.1 samtools variation 118771 118771 . . . alleles " C G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL193358.1 samtools variation 119966 119966 . . . alleles " T C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; N/A GL193358.1 samtools variation 120141 120141 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193358.1 samtools variation 120338 120338 . . . alleles " T C"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; N/A GL193358.1 samtools variation 123062 123062 . . . alleles " G A"; frequencies " 0.540540540540541 0.459459459459459"; depth 37 ; unknown ; synonymous GL193358.1 samtools variation 132530 132530 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193358.1 samtools variation 133456 133456 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL193358.1 samtools variation 133482 133482 . . . alleles " T C"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL193358.1 samtools variation 133637 133637 . . . alleles " A G"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; unknown ; N/A GL193358.1 samtools variation 159210 159210 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193358.1 samtools variation 160173 160173 . . . alleles " T C"; frequencies " 0.595238095238095 0.404761904761905"; depth 42 ; unknown ; N/A GL193358.1 samtools variation 160491 160491 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 25 ; known ; N/A GL193358.1 samtools variation 160596 160596 . . . alleles " T G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193358.1 samtools variation 164093 164093 . . . alleles " C T"; frequencies " 0.767942583732057 0.232057416267943"; depth 418 ; unknown ; synonymous GL193358.1 samtools variation 174456 174456 . . . alleles " G A"; frequencies " 0.520642201834862 0.479357798165138"; depth 436 ; unknown ; synonymous GL193358.1 samtools variation 175681 175681 . . . alleles " C T"; frequencies " 0.559322033898305 0.440677966101695"; depth 59 ; known ; N/A GL193358.1 samtools variation 210492 210492 . . . alleles " A G"; frequencies " 0.658959537572254 0.341040462427746"; depth 173 ; known ; N/A GL193358.1 samtools variation 214926 214926 . . . alleles " A G"; frequencies " 0.575 0.425"; depth 40 ; known ; N/A GL193358.1 samtools variation 217976 217976 . . . alleles " C T"; frequencies " 0.434782608695652 0.565217391304348"; depth 69 ; known ; non-synonymous GL193358.1 samtools variation 232558 232558 . . . alleles " A C"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; N/A GL193358.1 samtools variation 237122 237122 . . . alleles " C T"; frequencies " 0.46875 0.53125"; depth 64 ; unknown ; N/A GL193358.1 samtools variation 240348 240348 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193358.1 samtools variation 240695 240695 . . . alleles " C T"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; unknown ; N/A GL193358.1 samtools variation 241523 241523 . . . alleles " G A"; frequencies " 0.612903225806452 0.236559139784946"; depth 93 ; known ; N/A GL193358.1 samtools variation 241620 241620 . . . alleles " G A"; frequencies " 0.676 0.324"; depth 250 ; unknown ; N/A GL193358.1 samtools variation 242080 242080 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193358.1 samtools variation 242205 242205 . . . alleles " T C"; frequencies " 0.759398496240602 0.240601503759398"; depth 133 ; unknown ; N/A GL193358.1 samtools variation 242279 242279 . . . alleles " A C"; frequencies " 0.740740740740741 0.259259259259259"; depth 108 ; known ; N/A GL193358.1 samtools variation 243911 243911 . . . alleles " C T"; frequencies " 0.79826464208243 0.20173535791757"; depth 461 ; unknown ; N/A GL193358.1 samtools variation 244349 244349 . . . alleles " G A"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL193358.1 samtools variation 245910 245910 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193358.1 samtools variation 247454 247454 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193358.1 samtools variation 247774 247774 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193358.1 samtools variation 248583 248583 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193358.1 samtools variation 248756 248756 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193358.1 samtools variation 252107 252107 . . . alleles " G T"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL193358.1 samtools variation 252592 252592 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; N/A GL193358.1 samtools variation 252598 252598 . . . alleles " A C"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; N/A GL193358.1 samtools variation 254129 254129 . . . alleles " A T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; non-synonymous GL193358.1 samtools variation 266774 266774 . . . alleles " C T"; frequencies " 0.784810126582278 0.215189873417722"; depth 79 ; unknown ; N/A GL193358.1 samtools variation 270943 270943 . . . alleles " T G"; frequencies " 0.783132530120482 0.216867469879518"; depth 83 ; known ; synonymous GL193358.1 samtools variation 277032 277032 . . . alleles " C T"; frequencies " 0.705636743215031 0.294363256784969"; depth 479 ; unknown ; synonymous GL193358.1 samtools variation 347277 347277 . . . alleles " T C"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; synonymous GL193358.1 samtools variation 391570 391570 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193358.1 samtools variation 402058 402058 . . . alleles " C T"; frequencies " 0.432432432432432 0.567567567567568"; depth 37 ; unknown ; synonymous GL193358.1 samtools variation 402740 402740 . . . alleles " T C"; frequencies " 0.479166666666667 0.520833333333333"; depth 192 ; known ; N/A GL193358.1 samtools variation 402774 402774 . . . alleles " A G"; frequencies " 0.652892561983471 0.347107438016529"; depth 363 ; unknown ; N/A GL193358.1 samtools variation 416271 416271 . . . alleles " C T"; frequencies " 0.623188405797101 0.376811594202899"; depth 69 ; unknown ; non-synonymous GL193358.1 samtools variation 417208 417208 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL193358.1 samtools variation 419007 419007 . . . alleles " G C"; frequencies " 0.469101123595506 0.530898876404494"; depth 356 ; known ; N/A GL193358.1 samtools variation 419109 419109 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193358.1 samtools variation 420653 420653 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193358.1 samtools variation 468340 468340 . . . alleles " G T"; frequencies " 0.470588235294118 0.529411764705882"; depth 51 ; unknown ; synonymous GL193358.1 samtools variation 468394 468394 . . . alleles " T C"; frequencies " 0.446153846153846 0.553846153846154"; depth 65 ; unknown ; synonymous GL193358.1 samtools variation 473071 473071 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193358.1 samtools variation 475548 475548 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193358.1 samtools variation 477133 477133 . . . alleles " C A"; frequencies " 0.265486725663717 0.734513274336283"; depth 113 ; known ; non-synonymous GL193358.1 samtools variation 480694 480694 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 32 ; unknown ; N/A GL193358.1 samtools variation 528698 528698 . . . alleles " T C"; frequencies " 0.27710843373494 0.72289156626506"; depth 83 ; known ; N/A GL193358.1 samtools variation 529199 529199 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL193358.1 samtools variation 531386 531386 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193358.1 samtools variation 563415 563415 . . . alleles " G T"; frequencies " 0.695652173913043 0.304347826086957"; depth 69 ; unknown ; synonymous GL193358.1 samtools variation 589137 589137 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193358.1 samtools variation 589202 589202 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193358.1 samtools variation 589750 589750 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193358.1 samtools variation 589794 589794 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; N/A GL193358.1 samtools variation 590005 590005 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193358.1 samtools variation 590501 590501 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193358.1 samtools variation 591340 591340 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193358.1 samtools variation 591343 591343 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193358.1 samtools variation 617081 617081 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL193358.1 samtools variation 617546 617546 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193358.1 samtools variation 617787 617787 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193358.1 samtools variation 655457 655457 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193358.1 samtools variation 655497 655497 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193358.1 samtools variation 656684 656684 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193359.1 samtools variation 21881 21881 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193361.1 samtools variation 15838 15838 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193361.1 samtools variation 15843 15843 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193361.1 samtools variation 77461 77461 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193361.1 samtools variation 79804 79804 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL193361.1 samtools variation 87666 87666 . . . alleles " C T"; frequencies " 0.328467153284672 0.671532846715328"; depth 137 ; known ; N/A GL193361.1 samtools variation 132060 132060 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; known ; N/A GL193361.1 samtools variation 132281 132281 . . . alleles " G C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL193361.1 samtools variation 175538 175538 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193361.1 samtools variation 190085 190085 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193361.1 samtools variation 196864 196864 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL193361.1 samtools variation 196932 196932 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193361.1 samtools variation 219550 219550 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL193361.1 samtools variation 445325 445325 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL193361.1 samtools variation 445785 445785 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193361.1 samtools variation 446178 446178 . . . alleles " C T"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL193361.1 samtools variation 447020 447020 . . . alleles " C A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL193361.1 samtools variation 447364 447364 . . . alleles " A G"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; known ; N/A GL193361.1 samtools variation 447934 447934 . . . alleles " C T"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; known ; N/A GL193361.1 samtools variation 448481 448481 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193361.1 samtools variation 448484 448484 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193361.1 samtools variation 449045 449045 . . . alleles " A G"; frequencies " 0.581632653061224 0.418367346938776"; depth 196 ; known ; N/A GL193361.1 samtools variation 449221 449221 . . . alleles " G A"; frequencies " 0.419642857142857 0.580357142857143"; depth 112 ; known ; N/A GL193361.1 samtools variation 451411 451411 . . . alleles " A G"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; known ; N/A GL193361.1 samtools variation 452871 452871 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL193361.1 samtools variation 457150 457150 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL193361.1 samtools variation 458641 458641 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193361.1 samtools variation 466163 466163 . . . alleles " C G"; frequencies " 0.728476821192053 0.271523178807947"; depth 151 ; unknown ; N/A GL193361.1 samtools variation 486656 486656 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193361.1 samtools variation 595007 595007 . . . alleles " A G"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193361.1 samtools variation 595474 595474 . . . alleles " G A"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; known ; N/A GL193361.1 samtools variation 597836 597836 . . . alleles " C T"; frequencies " 0.671641791044776 0.328358208955224"; depth 67 ; unknown ; N/A GL193361.1 samtools variation 598105 598105 . . . alleles " G A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL193361.1 samtools variation 598796 598796 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; N/A GL193361.1 samtools variation 599702 599702 . . . alleles " T C"; frequencies " 0.740331491712707 0.259668508287293"; depth 181 ; unknown ; N/A GL193361.1 samtools variation 607034 607034 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193361.1 samtools variation 607249 607249 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 30 ; known ; N/A GL193361.1 samtools variation 607569 607569 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 126 ; known ; synonymous GL193361.1 samtools variation 609161 609161 . . . alleles " A G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; known ; N/A GL193361.1 samtools variation 609820 609820 . . . alleles " T C"; frequencies " 0.6015625 0.3984375"; depth 128 ; known ; non-synonymous GL193361.1 samtools variation 609959 609959 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 54 ; unknown ; synonymous GL193361.1 samtools variation 609986 609986 . . . alleles " G A"; frequencies " 0.465116279069767 0.534883720930233"; depth 86 ; unknown ; synonymous GL193361.1 samtools variation 610298 610298 . . . alleles " G C"; frequencies " 0.622950819672131 0.377049180327869"; depth 61 ; unknown ; synonymous GL193361.1 samtools variation 610369 610369 . . . alleles " T C"; frequencies " 0.566037735849057 0.433962264150943"; depth 53 ; known ; non-synonymous GL193362.1 samtools variation 131889 131889 . . . alleles " G A"; frequencies " 0.481481481481481 0.518518518518518"; depth 81 ; unknown ; non-synonymous GL193362.1 samtools variation 147608 147608 . . . alleles " G A"; frequencies " 0.725490196078431 0.274509803921569"; depth 153 ; known ; synonymous GL193362.1 samtools variation 167801 167801 . . . alleles " T A"; frequencies " 0.594594594594595 0.405405405405405"; depth 74 ; known ; N/A GL193362.1 samtools variation 460803 460803 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193362.1 samtools variation 470524 470524 . . . alleles " A C"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; N/A GL193363.1 samtools variation 167947 167947 . . . alleles " T G"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL193365.1 samtools variation 24072 24072 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; known ; N/A GL193365.1 samtools variation 40881 40881 . . . alleles " T C"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; known ; N/A GL193365.1 samtools variation 58736 58736 . . . alleles " A T"; frequencies " 0.594594594594595 0.405405405405405"; depth 74 ; unknown ; non-synonymous GL193365.1 samtools variation 80981 80981 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193365.1 samtools variation 259741 259741 . . . alleles " G A"; frequencies " 0.62043795620438 0.37956204379562"; depth 137 ; unknown ; non-synonymous GL193365.1 samtools variation 267888 267888 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193365.1 samtools variation 268427 268427 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL193365.1 samtools variation 272250 272250 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL193365.1 samtools variation 272790 272790 . . . alleles " A G"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; known ; N/A GL193365.1 samtools variation 272869 272869 . . . alleles " A C"; frequencies " 0.71875 0.28125"; depth 32 ; known ; N/A GL193365.1 samtools variation 272962 272962 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193365.1 samtools variation 274257 274257 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL193365.1 samtools variation 274309 274309 . . . alleles " C T"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; known ; N/A GL193365.1 samtools variation 277114 277114 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL193365.1 samtools variation 277485 277485 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193365.1 samtools variation 277528 277528 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193365.1 samtools variation 277621 277621 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL193365.1 samtools variation 277641 277641 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193365.1 samtools variation 278527 278527 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193365.1 samtools variation 278989 278989 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL193365.1 samtools variation 280374 280374 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 91 ; unknown ; synonymous GL193365.1 samtools variation 281043 281043 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL193365.1 samtools variation 281137 281137 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL193365.1 samtools variation 281358 281358 . . . alleles " A C"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; known ; N/A GL193365.1 samtools variation 281521 281521 . . . alleles " C T"; frequencies " 0.327586206896552 0.672413793103448"; depth 58 ; known ; N/A GL193365.1 samtools variation 281600 281600 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193365.1 samtools variation 281886 281886 . . . alleles " A T"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL193365.1 samtools variation 281976 281976 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL193365.1 samtools variation 282017 282017 . . . alleles " T G"; frequencies " 0.230769230769231 0.769230769230769"; depth 26 ; known ; N/A GL193365.1 samtools variation 282052 282052 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 30 ; known ; N/A GL193365.1 samtools variation 282175 282175 . . . alleles " A G"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; known ; N/A GL193365.1 samtools variation 282200 282200 . . . alleles " T C"; frequencies " 0.53125 0.46875"; depth 32 ; known ; N/A GL193365.1 samtools variation 282287 282287 . . . alleles " A G"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; known ; N/A GL193365.1 samtools variation 282494 282494 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; known ; N/A GL193365.1 samtools variation 282581 282581 . . . alleles " A C"; frequencies " 0.373333333333333 0.626666666666667"; depth 75 ; known ; N/A GL193365.1 samtools variation 282679 282679 . . . alleles " G A"; frequencies " 0.669354838709677 0.330645161290323"; depth 124 ; known ; N/A GL193365.1 samtools variation 282930 282930 . . . alleles " C T"; frequencies " 0.278688524590164 0.721311475409836"; depth 61 ; known ; N/A GL193365.1 samtools variation 283683 283683 . . . alleles " A G"; frequencies " 0.694915254237288 0.305084745762712"; depth 59 ; known ; N/A GL193365.1 samtools variation 283877 283877 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193365.1 samtools variation 284273 284273 . . . alleles " A G"; frequencies " 0.628571428571429 0.371428571428571"; depth 70 ; known ; N/A GL193365.1 samtools variation 284838 284838 . . . alleles " G C"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; known ; N/A GL193365.1 samtools variation 285250 285250 . . . alleles " A C"; frequencies " 0.351351351351351 0.648648648648649"; depth 37 ; known ; N/A GL193365.1 samtools variation 285490 285490 . . . alleles " A G"; frequencies " 0.44 0.56"; depth 25 ; known ; N/A GL193365.1 samtools variation 285542 285542 . . . alleles " T C"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; known ; N/A GL193365.1 samtools variation 285857 285857 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 60 ; known ; N/A GL193365.1 samtools variation 286065 286065 . . . alleles " G C"; frequencies " 0.376470588235294 0.623529411764706"; depth 85 ; known ; N/A GL193365.1 samtools variation 286074 286074 . . . alleles " T C"; frequencies " 0.360824742268041 0.639175257731959"; depth 97 ; known ; N/A GL193365.1 samtools variation 286184 286184 . . . alleles " T C"; frequencies " 0.402225755166932 0.597774244833068"; depth 629 ; known ; synonymous GL193365.1 samtools variation 286344 286344 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL193365.1 samtools variation 286699 286699 . . . alleles " T C"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; known ; N/A GL193365.1 samtools variation 287213 287213 . . . alleles " T C"; frequencies " 0.367567567567568 0.632432432432432"; depth 370 ; known ; N/A GL193365.1 samtools variation 287785 287785 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193365.1 samtools variation 287846 287846 . . . alleles " G C"; frequencies " 0.733333333333333 0.266666666666667"; depth 210 ; known ; N/A GL193365.1 samtools variation 408959 408959 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 44 ; known ; N/A GL193365.1 samtools variation 409660 409660 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193365.1 samtools variation 418492 418492 . . . alleles " A C"; frequencies " 0.575 0.425"; depth 40 ; unknown ; N/A GL193365.1 samtools variation 491717 491717 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193365.1 samtools variation 493919 493919 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 90 ; unknown ; N/A GL193365.1 samtools variation 495207 495207 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 39 ; unknown ; N/A GL193365.1 samtools variation 496429 496429 . . . alleles " A C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193365.1 samtools variation 503138 503138 . . . alleles " T C"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL193365.1 samtools variation 553020 553020 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193365.1 samtools variation 553265 553265 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193365.1 samtools variation 553302 553302 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193365.1 samtools variation 570947 570947 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL193365.1 samtools variation 578922 578922 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 44 ; unknown ; non-synonymous GL193365.1 samtools variation 585595 585595 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; synonymous GL193365.1 samtools variation 621065 621065 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193365.1 samtools variation 632501 632501 . . . alleles " A T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193365.1 samtools variation 632631 632631 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193365.1 samtools variation 713640 713640 . . . alleles " G C"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; known ; N/A GL193365.1 samtools variation 715224 715224 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 39 ; known ; N/A GL193365.1 samtools variation 715450 715450 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; unknown ; N/A GL193365.1 samtools variation 715549 715549 . . . alleles " G C"; frequencies " 0.236842105263158 0.763157894736842"; depth 38 ; known ; N/A GL193365.1 samtools variation 720901 720901 . . . alleles " C T"; frequencies " 0.531172069825436 0.468827930174564"; depth 401 ; unknown ; non-synonymous GL193365.1 samtools variation 724583 724583 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 45 ; known ; N/A GL193365.1 samtools variation 725917 725917 . . . alleles " T A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL193365.1 samtools variation 726290 726290 . . . alleles " T C"; frequencies " 0.298245614035088 0.701754385964912"; depth 57 ; known ; N/A GL193366.1 samtools variation 127919 127919 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 42 ; known ; N/A GL193366.1 samtools variation 131923 131923 . . . alleles " C G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL193367.1 samtools variation 223794 223794 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; unknown ; N/A GL193367.1 samtools variation 226119 226119 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193367.1 samtools variation 304547 304547 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193367.1 samtools variation 304548 304548 . . . alleles " A T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193367.1 samtools variation 304971 304971 . . . alleles " A C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193367.1 samtools variation 309443 309443 . . . alleles " G T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193367.1 samtools variation 310493 310493 . . . alleles " G A"; frequencies " 0.64 0.36"; depth 500 ; unknown ; synonymous GL193367.1 samtools variation 312328 312328 . . . alleles " G T"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; unknown ; N/A GL193367.1 samtools variation 317378 317378 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193367.1 samtools variation 317735 317735 . . . alleles " G A"; frequencies " 0.744186046511628 0.255813953488372"; depth 86 ; unknown ; synonymous GL193367.1 samtools variation 320362 320362 . . . alleles " G A"; frequencies " 0.680203045685279 0.319796954314721"; depth 197 ; unknown ; non-synonymous GL193367.1 samtools variation 334096 334096 . . . alleles " G T"; frequencies " 0.608391608391608 0.391608391608392"; depth 286 ; unknown ; non-synonymous GL193367.1 samtools variation 335401 335401 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193367.1 samtools variation 335421 335421 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193369.1 samtools variation 121246 121246 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; synonymous GL193369.1 samtools variation 135757 135757 . . . alleles " A G"; frequencies " 0.2 0.793548387096774"; depth 155 ; known ; N/A GL193369.1 samtools variation 136519 136519 . . . alleles " C T"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL193369.1 samtools variation 155075 155075 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193369.1 samtools variation 158097 158097 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193369.1 samtools variation 174907 174907 . . . alleles " A T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193369.1 samtools variation 175176 175176 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193369.1 samtools variation 179030 179030 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193369.1 samtools variation 179317 179317 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL193369.1 samtools variation 353894 353894 . . . alleles " G A"; frequencies " 0.327868852459016 0.672131147540984"; depth 61 ; unknown ; N/A GL193369.1 samtools variation 372825 372825 . . . alleles " T C"; frequencies " 0.690721649484536 0.309278350515464"; depth 97 ; unknown ; non-synonymous GL193369.1 samtools variation 517690 517690 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193369.1 samtools variation 518836 518836 . . . alleles " T G"; frequencies " 0.73015873015873 0.26984126984127"; depth 126 ; unknown ; N/A GL193369.1 samtools variation 529468 529468 . . . alleles " A T"; frequencies " 0.259259259259259 0.740740740740741"; depth 108 ; unknown ; N/A GL193369.1 samtools variation 532592 532592 . . . alleles " C T"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL193372.1 samtools variation 58949 58949 . . . alleles " A G"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL193372.1 samtools variation 60379 60379 . . . alleles " G C"; frequencies " 0.774193548387097 0.225806451612903"; depth 62 ; unknown ; N/A GL193372.1 samtools variation 66323 66323 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193372.1 samtools variation 71067 71067 . . . alleles " G A"; frequencies " 0.799204771371769 0.200795228628231"; depth 503 ; unknown ; non-synonymous GL193372.1 samtools variation 74412 74412 . . . alleles " C T"; frequencies " 0.790322580645161 0.209677419354839"; depth 248 ; unknown ; N/A GL193372.1 samtools variation 74429 74429 . . . alleles " C T"; frequencies " 0.299107142857143 0.700892857142857"; depth 224 ; unknown ; N/A GL193372.1 samtools variation 75022 75022 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193372.1 samtools variation 111152 111152 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL193372.1 samtools variation 111203 111203 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL193372.1 samtools variation 112225 112225 . . . alleles " T C"; frequencies " 0.521739130434783 0.478260869565217"; depth 46 ; unknown ; N/A GL193372.1 samtools variation 116919 116919 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193372.1 samtools variation 117108 117108 . . . alleles " T A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193372.1 samtools variation 117674 117674 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193372.1 samtools variation 117761 117761 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193372.1 samtools variation 119123 119123 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193372.1 samtools variation 120887 120887 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193372.1 samtools variation 120942 120942 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193372.1 samtools variation 121450 121450 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193372.1 samtools variation 124251 124251 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193372.1 samtools variation 124262 124262 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193372.1 samtools variation 127537 127537 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193372.1 samtools variation 129544 129544 . . . alleles " T G"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL193372.1 samtools variation 130447 130447 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL193372.1 samtools variation 130476 130476 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL193372.1 samtools variation 136628 136628 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 40 ; known ; N/A GL193372.1 samtools variation 136673 136673 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193372.1 samtools variation 137111 137111 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193372.1 samtools variation 137324 137324 . . . alleles " C T"; frequencies " 0.415384615384615 0.584615384615385"; depth 65 ; unknown ; N/A GL193372.1 samtools variation 137373 137373 . . . alleles " T A"; frequencies " 0.596491228070175 0.403508771929825"; depth 57 ; unknown ; N/A GL193372.1 samtools variation 145858 145858 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193372.1 samtools variation 145936 145936 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193372.1 samtools variation 147659 147659 . . . alleles " A T"; frequencies " 0.406779661016949 0.593220338983051"; depth 59 ; known ; N/A GL193372.1 samtools variation 148212 148212 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193372.1 samtools variation 148244 148244 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193372.1 samtools variation 149496 149496 . . . alleles " G C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL193372.1 samtools variation 149634 149634 . . . alleles " G T"; frequencies " 0.48 0.52"; depth 25 ; known ; N/A GL193372.1 samtools variation 150378 150378 . . . alleles " G T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL193372.1 samtools variation 151013 151013 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL193372.1 samtools variation 151814 151814 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193372.1 samtools variation 152434 152434 . . . alleles " A C"; frequencies " 0.594594594594595 0.405405405405405"; depth 111 ; known ; N/A GL193372.1 samtools variation 153194 153194 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193372.1 samtools variation 153542 153542 . . . alleles " C T"; frequencies " 0.671232876712329 0.328767123287671"; depth 73 ; known ; N/A GL193372.1 samtools variation 154799 154799 . . . alleles " T C"; frequencies " 0.760869565217391 0.239130434782609"; depth 46 ; known ; N/A GL193372.1 samtools variation 154816 154816 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; known ; N/A GL193372.1 samtools variation 154868 154868 . . . alleles " A G"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; known ; N/A GL193372.1 samtools variation 155768 155768 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL193372.1 samtools variation 155957 155957 . . . alleles " C A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL193372.1 samtools variation 157726 157726 . . . alleles " A G"; frequencies " 0.301328502415459 0.698671497584541"; depth 1656 ; known ; N/A GL193372.1 samtools variation 157742 157742 . . . alleles " G C"; frequencies " 0.273858921161826 0.725548310610551"; depth 1687 ; known ; N/A GL193372.1 samtools variation 169238 169238 . . . alleles " C G"; frequencies " 0.788113695090439 0.211886304909561"; depth 387 ; known ; N/A GL193372.1 samtools variation 179451 179451 . . . alleles " C A"; frequencies " 0.551971326164875 0.448028673835125"; depth 558 ; unknown ; N/A GL193372.1 samtools variation 179454 179454 . . . alleles " A C"; frequencies " 0.553930530164534 0.446069469835466"; depth 547 ; unknown ; N/A GL193372.1 samtools variation 180148 180148 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193372.1 samtools variation 180310 180310 . . . alleles " T G"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL193372.1 samtools variation 185908 185908 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL193372.1 samtools variation 207204 207204 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL193372.1 samtools variation 208355 208355 . . . alleles " C G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193372.1 samtools variation 208395 208395 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL193372.1 samtools variation 210288 210288 . . . alleles " G A"; frequencies " 0.488262910798122 0.511737089201878"; depth 213 ; known ; N/A GL193372.1 samtools variation 211569 211569 . . . alleles " T A"; frequencies " 0.557077625570776 0.442922374429224"; depth 219 ; unknown ; N/A GL193372.1 samtools variation 313156 313156 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 95 ; unknown ; N/A GL193372.1 samtools variation 313638 313638 . . . alleles " G C"; frequencies " 0.761627906976744 0.238372093023256"; depth 344 ; unknown ; non-synonymous GL193372.1 samtools variation 314217 314217 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193372.1 samtools variation 318755 318755 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193372.1 samtools variation 319267 319267 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193372.1 samtools variation 321358 321358 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193372.1 samtools variation 321366 321366 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193372.1 samtools variation 321572 321572 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193372.1 samtools variation 324414 324414 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193372.1 samtools variation 327544 327544 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193372.1 samtools variation 335219 335219 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193372.1 samtools variation 335367 335367 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193372.1 samtools variation 337761 337761 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193372.1 samtools variation 355876 355876 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193372.1 samtools variation 356463 356463 . . . alleles " T C"; frequencies " 0.207100591715976 0.792899408284024"; depth 169 ; unknown ; N/A GL193372.1 samtools variation 381872 381872 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; N/A GL193372.1 samtools variation 384115 384115 . . . alleles " T C"; frequencies " 0.651785714285714 0.348214285714286"; depth 672 ; unknown ; synonymous GL193372.1 samtools variation 384475 384475 . . . alleles " C T"; frequencies " 0.795518207282913 0.204481792717087"; depth 1071 ; unknown ; synonymous GL193372.1 samtools variation 384526 384526 . . . alleles " C T"; frequencies " 0.793167128347184 0.206832871652816"; depth 1083 ; unknown ; synonymous GL193372.1 samtools variation 384571 384571 . . . alleles " T C"; frequencies " 0.608324439701174 0.391675560298826"; depth 937 ; unknown ; synonymous GL193372.1 samtools variation 385695 385695 . . . alleles " A C"; frequencies " 0.788906009244992 0.211093990755008"; depth 649 ; unknown ; synonymous GL193372.1 samtools variation 385765 385765 . . . alleles " A G"; frequencies " 0.666428060128847 0.332140300644238"; depth 1397 ; unknown ; non-synonymous GL193372.1 samtools variation 386650 386650 . . . alleles " T C"; frequencies " 0.781990521327014 0.218009478672986"; depth 211 ; unknown ; N/A GL193372.1 samtools variation 387089 387089 . . . alleles " A G"; frequencies " 0.477272727272727 0.522727272727273"; depth 44 ; unknown ; N/A GL193372.1 samtools variation 387116 387116 . . . alleles " G A"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL193372.1 samtools variation 387188 387188 . . . alleles " G T"; frequencies " 0.603448275862069 0.396551724137931"; depth 58 ; unknown ; N/A GL193372.1 samtools variation 387190 387190 . . . alleles " A T"; frequencies " 0.610169491525424 0.389830508474576"; depth 59 ; unknown ; N/A GL193372.1 samtools variation 387464 387464 . . . alleles " C T"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; unknown ; N/A GL193372.1 samtools variation 388113 388113 . . . alleles " T C"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; unknown ; N/A GL193372.1 samtools variation 388617 388617 . . . alleles " G T"; frequencies " 0.735294117647059 0.264705882352941"; depth 68 ; unknown ; N/A GL193372.1 samtools variation 388779 388779 . . . alleles " T G"; frequencies " 0.657407407407407 0.342592592592593"; depth 108 ; unknown ; N/A GL193372.1 samtools variation 388959 388959 . . . alleles " C T"; frequencies " 0.635593220338983 0.364406779661017"; depth 118 ; unknown ; N/A GL193372.1 samtools variation 389479 389479 . . . alleles " T C"; frequencies " 0.744827586206897 0.255172413793103"; depth 145 ; unknown ; N/A GL193372.1 samtools variation 390015 390015 . . . alleles " G T"; frequencies " 0.735849056603774 0.264150943396226"; depth 53 ; unknown ; N/A GL193372.1 samtools variation 390017 390017 . . . alleles " G A"; frequencies " 0.725490196078431 0.274509803921569"; depth 51 ; unknown ; N/A GL193372.1 samtools variation 391119 391119 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193372.1 samtools variation 391585 391585 . . . alleles " T C"; frequencies " 0.494736842105263 0.505263157894737"; depth 95 ; unknown ; N/A GL193372.1 samtools variation 391850 391850 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193372.1 samtools variation 392472 392472 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 186 ; unknown ; non-synonymous GL193372.1 samtools variation 393257 393257 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193372.1 samtools variation 393763 393763 . . . alleles " C A"; frequencies " 0.696153846153846 0.303846153846154"; depth 260 ; unknown ; synonymous GL193372.1 samtools variation 393889 393889 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL193372.1 samtools variation 395040 395040 . . . alleles " A G"; frequencies " 0.633333333333333 0.366666666666667"; depth 90 ; unknown ; N/A GL193372.1 samtools variation 405119 405119 . . . alleles " G A"; frequencies " 0.746666666666667 0.253333333333333"; depth 75 ; unknown ; N/A GL193372.1 samtools variation 405147 405147 . . . alleles " T C"; frequencies " 0.704225352112676 0.295774647887324"; depth 71 ; unknown ; N/A GL193372.1 samtools variation 405534 405534 . . . alleles " G C"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; unknown ; N/A GL193372.1 samtools variation 405688 405688 . . . alleles " C T"; frequencies " 0.766233766233766 0.233766233766234"; depth 77 ; unknown ; N/A GL193372.1 samtools variation 405885 405885 . . . alleles " G C"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; N/A GL193372.1 samtools variation 405951 405951 . . . alleles " A G"; frequencies " 0.780141843971631 0.219858156028369"; depth 141 ; unknown ; N/A GL193372.1 samtools variation 406974 406974 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193372.1 samtools variation 409003 409003 . . . alleles " G A"; frequencies " 0.698412698412698 0.301587301587302"; depth 189 ; unknown ; synonymous GL193372.1 samtools variation 409082 409082 . . . alleles " G A"; frequencies " 0.469879518072289 0.530120481927711"; depth 83 ; unknown ; synonymous GL193372.1 samtools variation 409085 409085 . . . alleles " A G"; frequencies " 0.455696202531646 0.544303797468354"; depth 79 ; unknown ; synonymous GL193372.1 samtools variation 409513 409513 . . . alleles " T C"; frequencies " 0.411214953271028 0.588785046728972"; depth 107 ; unknown ; synonymous GL193372.1 samtools variation 409612 409612 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL193372.1 samtools variation 409699 409699 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193372.1 samtools variation 409771 409771 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 95 ; unknown ; synonymous GL193372.1 samtools variation 410626 410626 . . . alleles " A G"; frequencies " 0.36046511627907 0.63953488372093"; depth 172 ; unknown ; non-synonymous GL193372.1 samtools variation 410642 410642 . . . alleles " C T"; frequencies " 0.343195266272189 0.650887573964497"; depth 169 ; unknown ; non-synonymous GL193372.1 samtools variation 410705 410705 . . . alleles " T G"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL193372.1 samtools variation 414950 414950 . . . alleles " T C"; frequencies " 0.28125 0.71875"; depth 64 ; unknown ; N/A GL193372.1 samtools variation 415173 415173 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL193372.1 samtools variation 415196 415196 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193372.1 samtools variation 418381 418381 . . . alleles " T C"; frequencies " 0.794392523364486 0.205607476635514"; depth 107 ; unknown ; non-synonymous GL193372.1 samtools variation 422940 422940 . . . alleles " A G"; frequencies " 0.743589743589744 0.256410256410256"; depth 156 ; unknown ; synonymous GL193372.1 samtools variation 430314 430314 . . . alleles " C G"; frequencies " 0.540983606557377 0.459016393442623"; depth 61 ; unknown ; N/A GL193372.1 samtools variation 430331 430331 . . . alleles " C T"; frequencies " 0.36734693877551 0.63265306122449"; depth 49 ; unknown ; N/A GL193372.1 samtools variation 442667 442667 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193372.1 samtools variation 442728 442728 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193372.1 samtools variation 442781 442781 . . . alleles " C A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193372.1 samtools variation 442939 442939 . . . alleles " A G"; frequencies " 0.465116279069767 0.534883720930233"; depth 43 ; unknown ; N/A GL193372.1 samtools variation 442982 442982 . . . alleles " A G"; frequencies " 0.317073170731707 0.682926829268293"; depth 41 ; unknown ; N/A GL193372.1 samtools variation 445288 445288 . . . alleles " G A"; frequencies " 0.392156862745098 0.607843137254902"; depth 51 ; unknown ; synonymous GL193372.1 samtools variation 446559 446559 . . . alleles " C G"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; synonymous GL193372.1 samtools variation 446580 446580 . . . alleles " A G"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; synonymous GL193372.1 samtools variation 448403 448403 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193372.1 samtools variation 448882 448882 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL193372.1 samtools variation 449029 449029 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193372.1 samtools variation 484699 484699 . . . alleles " G A"; frequencies " 0.385714285714286 0.614285714285714"; depth 70 ; known ; N/A GL193372.1 samtools variation 484779 484779 . . . alleles " C G"; frequencies " 0.412698412698413 0.587301587301587"; depth 63 ; known ; N/A GL193372.1 samtools variation 486038 486038 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 33 ; known ; N/A GL193372.1 samtools variation 487098 487098 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193372.1 samtools variation 511427 511427 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193372.1 samtools variation 526282 526282 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193372.1 samtools variation 537464 537464 . . . alleles " T C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL193372.1 samtools variation 544127 544127 . . . alleles " G A"; frequencies " 0.443262411347518 0.556737588652482"; depth 282 ; unknown ; N/A GL193372.1 samtools variation 545023 545023 . . . alleles " T G"; frequencies " 0.576470588235294 0.423529411764706"; depth 85 ; unknown ; N/A GL193372.1 samtools variation 548567 548567 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 33 ; unknown ; N/A GL193372.1 samtools variation 569859 569859 . . . alleles " T C"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL193372.1 samtools variation 570181 570181 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; non-synonymous GL193372.1 samtools variation 572796 572796 . . . alleles " G C"; frequencies " 0.660516605166052 0.339483394833948"; depth 271 ; unknown ; N/A GL193372.1 samtools variation 573080 573080 . . . alleles " T G"; frequencies " 0.689189189189189 0.310810810810811"; depth 74 ; unknown ; N/A GL193372.1 samtools variation 573121 573121 . . . alleles " A G"; frequencies " 0.648148148148148 0.351851851851852"; depth 54 ; unknown ; N/A GL193372.1 samtools variation 593753 593753 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193372.1 samtools variation 595806 595806 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; known ; N/A GL193372.1 samtools variation 596366 596366 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL193372.1 samtools variation 596468 596468 . . . alleles " C A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL193372.1 samtools variation 596500 596500 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL193372.1 samtools variation 596746 596746 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL193372.1 samtools variation 596750 596750 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL193372.1 samtools variation 596857 596857 . . . alleles " A C"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; known ; N/A GL193372.1 samtools variation 599660 599660 . . . alleles " T C"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; known ; synonymous GL193372.1 samtools variation 644950 644950 . . . alleles " T G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193372.1 samtools variation 714280 714280 . . . alleles " A C"; frequencies " 0.743243243243243 0.256756756756757"; depth 74 ; unknown ; N/A GL193372.1 samtools variation 715333 715333 . . . alleles " C G"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; N/A GL193372.1 samtools variation 721959 721959 . . . alleles " C A"; frequencies " 0.25 0.75"; depth 16 ; known ; synonymous GL193372.1 samtools variation 725021 725021 . . . alleles " T G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL193373.1 samtools variation 7461 7461 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL193373.1 samtools variation 7464 7464 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL193373.1 samtools variation 9200 9200 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 33 ; known ; N/A GL193373.1 samtools variation 23022 23022 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193373.1 samtools variation 23023 23023 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193373.1 samtools variation 36092 36092 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; N/A GL193373.1 samtools variation 36382 36382 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193373.1 samtools variation 134188 134188 . . . alleles " G A"; frequencies " 0.225 0.775"; depth 80 ; known ; N/A GL193373.1 samtools variation 172265 172265 . . . alleles " A G"; frequencies " 0.388235294117647 0.611764705882353"; depth 85 ; known ; N/A GL193373.1 samtools variation 177691 177691 . . . alleles " T C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193373.1 samtools variation 234190 234190 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; synonymous GL193373.1 samtools variation 248657 248657 . . . alleles " T C"; frequencies " 0.608187134502924 0.391812865497076"; depth 342 ; known ; synonymous GL193373.1 samtools variation 322892 322892 . . . alleles " C T"; frequencies " 0.385964912280702 0.614035087719298"; depth 57 ; unknown ; N/A GL193373.1 samtools variation 383912 383912 . . . alleles " A C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; non-synonymous GL193373.1 samtools variation 585973 585973 . . . alleles " A T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL193376.1 samtools variation 207373 207373 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193376.1 samtools variation 371652 371652 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; synonymous GL193376.1 samtools variation 394990 394990 . . . alleles " A G"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; N/A GL193376.1 samtools variation 406094 406094 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193376.1 samtools variation 406892 406892 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193376.1 samtools variation 407082 407082 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL193376.1 samtools variation 407506 407506 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193376.1 samtools variation 407921 407921 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193376.1 samtools variation 409425 409425 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193376.1 samtools variation 409657 409657 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL193377.1 samtools variation 189958 189958 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193377.1 samtools variation 190962 190962 . . . alleles " T G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193377.1 samtools variation 191370 191370 . . . alleles " G A"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL193377.1 samtools variation 192321 192321 . . . alleles " T C"; frequencies " 0.798561151079137 0.201438848920863"; depth 278 ; unknown ; synonymous GL193377.1 samtools variation 195480 195480 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193377.1 samtools variation 197487 197487 . . . alleles " C T"; frequencies " 0.361623616236162 0.638376383763838"; depth 271 ; unknown ; N/A GL193377.1 samtools variation 200473 200473 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL193377.1 samtools variation 200486 200486 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL193377.1 samtools variation 202473 202473 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193377.1 samtools variation 217622 217622 . . . alleles " T A"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL193377.1 samtools variation 343842 343842 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; non-synonymous GL193377.1 samtools variation 343897 343897 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; known ; non-synonymous GL193377.1 samtools variation 344068 344068 . . . alleles " T G"; frequencies " 0.753623188405797 0.231884057971014"; depth 69 ; known ; synonymous GL193377.1 samtools variation 379229 379229 . . . alleles " C T"; frequencies " 0.704545454545455 0.295454545454545"; depth 132 ; unknown ; N/A GL193377.1 samtools variation 379244 379244 . . . alleles " G T"; frequencies " 0.714285714285714 0.285714285714286"; depth 126 ; unknown ; N/A GL193377.1 samtools variation 379420 379420 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 60 ; unknown ; N/A GL193377.1 samtools variation 380667 380667 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 49 ; unknown ; N/A GL193377.1 samtools variation 380779 380779 . . . alleles " T C"; frequencies " 0.693181818181818 0.306818181818182"; depth 88 ; unknown ; N/A GL193377.1 samtools variation 382800 382800 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 44 ; unknown ; synonymous GL193377.1 samtools variation 390066 390066 . . . alleles " G T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; non-synonymous GL193377.1 samtools variation 396172 396172 . . . alleles " C T"; frequencies " 0.240963855421687 0.759036144578313"; depth 83 ; known ; non-synonymous GL193377.1 samtools variation 400168 400168 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 90 ; unknown ; synonymous GL193377.1 samtools variation 403563 403563 . . . alleles " C T"; frequencies " 0.771929824561403 0.228070175438596"; depth 57 ; unknown ; synonymous GL193377.1 samtools variation 422431 422431 . . . alleles " A G"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; synonymous GL193377.1 samtools variation 422494 422494 . . . alleles " G A"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; unknown ; synonymous GL193377.1 samtools variation 542028 542028 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193377.1 samtools variation 543819 543819 . . . alleles " C T"; frequencies " 0.68 0.32"; depth 75 ; unknown ; N/A GL193377.1 samtools variation 546893 546893 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; unknown ; N/A GL193377.1 samtools variation 547722 547722 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193377.1 samtools variation 547723 547723 . . . alleles " T A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193379.1 samtools variation 42513 42513 . . . alleles " G T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193379.1 samtools variation 48689 48689 . . . alleles " C A"; frequencies " 0.27906976744186 0.720930232558139"; depth 43 ; unknown ; N/A GL193379.1 samtools variation 49036 49036 . . . alleles " C T"; frequencies " 0.77536231884058 0.22463768115942"; depth 138 ; unknown ; N/A GL193379.1 samtools variation 126269 126269 . . . alleles " C A"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL193379.1 samtools variation 126580 126580 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 35 ; known ; N/A GL193379.1 samtools variation 127917 127917 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; known ; N/A GL193379.1 samtools variation 127962 127962 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 25 ; known ; N/A GL193379.1 samtools variation 141519 141519 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193379.1 samtools variation 141551 141551 . . . alleles " G T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193379.1 samtools variation 142026 142026 . . . alleles " G T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL193379.1 samtools variation 142060 142060 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL193379.1 samtools variation 163844 163844 . . . alleles " T A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193379.1 samtools variation 179950 179950 . . . alleles " G A"; frequencies " 0.209606986899563 0.790393013100437"; depth 229 ; known ; synonymous GL193379.1 samtools variation 196341 196341 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193383.1 samtools variation 207655 207655 . . . alleles " G T"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL193383.1 samtools variation 233464 233464 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193383.1 samtools variation 235580 235580 . . . alleles " A T"; frequencies " 0.757575757575758 0.242424242424242"; depth 66 ; unknown ; N/A GL193383.1 samtools variation 243246 243246 . . . alleles " G T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL193383.1 samtools variation 249645 249645 . . . alleles " T A"; frequencies " 0.797297297297297 0.202702702702703"; depth 74 ; unknown ; N/A GL193383.1 samtools variation 250207 250207 . . . alleles " G T"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL193383.1 samtools variation 252520 252520 . . . alleles " T C"; frequencies " 0.441860465116279 0.558139534883721"; depth 43 ; known ; N/A GL193383.1 samtools variation 698722 698722 . . . alleles " C T"; frequencies " 0.206627680311891 0.793372319688109"; depth 513 ; unknown ; N/A GL193383.1 samtools variation 699022 699022 . . . alleles " C T"; frequencies " 0.73015516078255 0.26984483921745"; depth 4447 ; unknown ; synonymous GL193383.1 samtools variation 700106 700106 . . . alleles " T C"; frequencies " 0.268357305071915 0.731642694928085"; depth 2642 ; unknown ; synonymous GL193383.1 samtools variation 700112 700112 . . . alleles " G A"; frequencies " 0.248856036606829 0.750791974656811"; depth 2841 ; unknown ; synonymous GL193383.1 samtools variation 705004 705004 . . . alleles " C T"; frequencies " 0.203454894433781 0.796545105566219"; depth 521 ; unknown ; N/A GL193383.1 samtools variation 705304 705304 . . . alleles " C T"; frequencies " 0.735119047619048 0.264880952380952"; depth 3696 ; unknown ; synonymous GL193384.1 samtools variation 600468 600468 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193384.1 samtools variation 616547 616547 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193384.1 samtools variation 643145 643145 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 63 ; known ; synonymous GL193384.1 samtools variation 643814 643814 . . . alleles " T C"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; known ; synonymous GL193384.1 samtools variation 644066 644066 . . . alleles " C T"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; synonymous GL193384.1 samtools variation 644072 644072 . . . alleles " T C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; synonymous GL193384.1 samtools variation 644180 644180 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 15 ; known ; synonymous GL193384.1 samtools variation 644270 644270 . . . alleles " A C"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; known ; synonymous GL193384.1 samtools variation 644600 644600 . . . alleles " A G"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; synonymous GL193384.1 samtools variation 644633 644633 . . . alleles " C T"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; known ; synonymous GL193384.1 samtools variation 645330 645330 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; non-synonymous GL193384.1 samtools variation 679035 679035 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193384.1 samtools variation 683601 683601 . . . alleles " T C"; frequencies " 0.747368421052632 0.252631578947368"; depth 95 ; unknown ; N/A GL193384.1 samtools variation 683646 683646 . . . alleles " T C"; frequencies " 0.753846153846154 0.246153846153846"; depth 65 ; unknown ; N/A GL193385.1 samtools variation 505259 505259 . . . alleles " C G"; frequencies " 0.638297872340426 0.361702127659574"; depth 47 ; unknown ; N/A GL193385.1 samtools variation 525283 525283 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 24 ; known ; N/A GL193385.1 samtools variation 526764 526764 . . . alleles " C G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193385.1 samtools variation 530555 530555 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193385.1 samtools variation 535882 535882 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193385.1 samtools variation 538390 538390 . . . alleles " A G"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL193386.1 samtools variation 258611 258611 . . . alleles " C A"; frequencies " 0.621428571428571 0.378571428571429"; depth 140 ; unknown ; N/A GL193386.1 samtools variation 323498 323498 . . . alleles " T C"; frequencies " 0.407894736842105 0.592105263157895"; depth 76 ; unknown ; N/A GL193386.1 samtools variation 323504 323504 . . . alleles " C T"; frequencies " 0.774647887323944 0.225352112676056"; depth 71 ; unknown ; N/A GL193386.1 samtools variation 372785 372785 . . . alleles " C G"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL193386.1 samtools variation 380539 380539 . . . alleles " T C"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; known ; N/A GL193387.1 samtools variation 55849 55849 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 30 ; known ; synonymous GL193387.1 samtools variation 198709 198709 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193387.1 samtools variation 199686 199686 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; unknown ; N/A GL193387.1 samtools variation 199798 199798 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193387.1 samtools variation 199879 199879 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193387.1 samtools variation 199993 199993 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193387.1 samtools variation 200069 200069 . . . alleles " A G"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL193387.1 samtools variation 200102 200102 . . . alleles " G A"; frequencies " 0.315789473684211 0.684210526315789"; depth 38 ; unknown ; N/A GL193387.1 samtools variation 200129 200129 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193387.1 samtools variation 200789 200789 . . . alleles " C G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193387.1 samtools variation 201620 201620 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL193387.1 samtools variation 201748 201748 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193387.1 samtools variation 202173 202173 . . . alleles " C T"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL193387.1 samtools variation 202186 202186 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 40 ; unknown ; N/A GL193387.1 samtools variation 202309 202309 . . . alleles " C A"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; unknown ; N/A GL193387.1 samtools variation 202387 202387 . . . alleles " C T"; frequencies " 0.3125 0.6875"; depth 32 ; unknown ; N/A GL193387.1 samtools variation 203544 203544 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193387.1 samtools variation 203997 203997 . . . alleles " A T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193387.1 samtools variation 205687 205687 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193387.1 samtools variation 217757 217757 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193387.1 samtools variation 219432 219432 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193387.1 samtools variation 235130 235130 . . . alleles " G A"; frequencies " 0.734375 0.265625"; depth 64 ; unknown ; synonymous GL193387.1 samtools variation 250039 250039 . . . alleles " A C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193387.1 samtools variation 250551 250551 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL193387.1 samtools variation 257477 257477 . . . alleles " G C"; frequencies " 0.375 0.625"; depth 40 ; known ; non-synonymous GL193387.1 samtools variation 340836 340836 . . . alleles " G C"; frequencies " 0.553719008264463 0.446280991735537"; depth 121 ; unknown ; non-synonymous GL193387.1 samtools variation 362558 362558 . . . alleles " T C"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; synonymous GL193387.1 samtools variation 375142 375142 . . . alleles " C T"; frequencies " 0.796875 0.203125"; depth 64 ; unknown ; synonymous GL193387.1 samtools variation 379464 379464 . . . alleles " G A"; frequencies " 0.369565217391304 0.630434782608696"; depth 46 ; unknown ; N/A GL193387.1 samtools variation 380713 380713 . . . alleles " G A"; frequencies " 0.753086419753086 0.246913580246914"; depth 162 ; unknown ; N/A GL193387.1 samtools variation 381005 381005 . . . alleles " A G"; frequencies " 0.573770491803279 0.426229508196721"; depth 183 ; unknown ; N/A GL193387.1 samtools variation 398089 398089 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; synonymous GL193387.1 samtools variation 449257 449257 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL193387.1 samtools variation 480805 480805 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193387.1 samtools variation 487137 487137 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL193387.1 samtools variation 570844 570844 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193387.1 samtools variation 593360 593360 . . . alleles " G A"; frequencies " 0.661764705882353 0.338235294117647"; depth 68 ; unknown ; N/A GL193387.1 samtools variation 595888 595888 . . . alleles " T C"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; N/A GL193387.1 samtools variation 595914 595914 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL193387.1 samtools variation 595919 595919 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL193387.1 samtools variation 595988 595988 . . . alleles " G T"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL193387.1 samtools variation 596076 596076 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL193387.1 samtools variation 596406 596406 . . . alleles " C A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL193387.1 samtools variation 597198 597198 . . . alleles " C T"; frequencies " 0.701492537313433 0.298507462686567"; depth 67 ; unknown ; N/A GL193387.1 samtools variation 597911 597911 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; synonymous GL193387.1 samtools variation 604370 604370 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193387.1 samtools variation 604387 604387 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL193387.1 samtools variation 604396 604396 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL193387.1 samtools variation 604449 604449 . . . alleles " A G"; frequencies " 0.76 0.24"; depth 50 ; unknown ; N/A GL193387.1 samtools variation 605146 605146 . . . alleles " C A"; frequencies " 0.421276595744681 0.578723404255319"; depth 235 ; unknown ; synonymous GL193387.1 samtools variation 605759 605759 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193387.1 samtools variation 609146 609146 . . . alleles " G A"; frequencies " 0.327014218009479 0.672985781990521"; depth 211 ; unknown ; synonymous GL193387.1 samtools variation 644663 644663 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 66 ; unknown ; N/A GL193387.1 samtools variation 658981 658981 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; non-synonymous GL193387.1 samtools variation 667458 667458 . . . alleles " C T"; frequencies " 0.707865168539326 0.292134831460674"; depth 89 ; unknown ; N/A GL193387.1 samtools variation 667614 667614 . . . alleles " G A"; frequencies " 0.71957671957672 0.28042328042328"; depth 189 ; unknown ; N/A GL193387.1 samtools variation 672215 672215 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; synonymous GL193387.1 samtools variation 675842 675842 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193387.1 samtools variation 677275 677275 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193388.1 samtools variation 87409 87409 . . . alleles " G A"; frequencies " 0.421875 0.578125"; depth 64 ; known ; synonymous GL193388.1 samtools variation 121187 121187 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; known ; N/A GL193388.1 samtools variation 129457 129457 . . . alleles " T C"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; known ; N/A GL193388.1 samtools variation 192117 192117 . . . alleles " A T"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; known ; N/A GL193388.1 samtools variation 192153 192153 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL193388.1 samtools variation 194906 194906 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193388.1 samtools variation 195669 195669 . . . alleles " C G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL193388.1 samtools variation 195963 195963 . . . alleles " C T"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; N/A GL193388.1 samtools variation 233182 233182 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193388.1 samtools variation 233684 233684 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL193388.1 samtools variation 288609 288609 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL193388.1 samtools variation 288665 288665 . . . alleles " C T"; frequencies " 0.675 0.325"; depth 40 ; unknown ; N/A GL193388.1 samtools variation 292953 292953 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193388.1 samtools variation 299800 299800 . . . alleles " C G"; frequencies " 0.315384615384615 0.676923076923077"; depth 130 ; known ; non-synonymous GL193388.1 samtools variation 301251 301251 . . . alleles " G C"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; known ; synonymous GL193388.1 samtools variation 307760 307760 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193388.1 samtools variation 546016 546016 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193390.1 samtools variation 196904 196904 . . . alleles " T C"; frequencies " 0.372093023255814 0.627906976744186"; depth 43 ; known ; synonymous GL193390.1 samtools variation 200309 200309 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 24 ; known ; synonymous GL193390.1 samtools variation 359143 359143 . . . alleles " A G"; frequencies " 0.260416666666667 0.739583333333333"; depth 96 ; known ; non-synonymous GL193390.1 samtools variation 405747 405747 . . . alleles " G A"; frequencies " 0.365853658536585 0.634146341463415"; depth 41 ; known ; N/A GL193390.1 samtools variation 406207 406207 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193390.1 samtools variation 408390 408390 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL193390.1 samtools variation 410573 410573 . . . alleles " G T"; frequencies " 0.71301775147929 0.28698224852071"; depth 338 ; unknown ; N/A GL193390.1 samtools variation 449519 449519 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193390.1 samtools variation 455803 455803 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 25 ; known ; N/A GL193391.1 samtools variation 211474 211474 . . . alleles " G A"; frequencies " 0.725490196078431 0.274509803921569"; depth 51 ; known ; N/A GL193392.1 samtools variation 109222 109222 . . . alleles " G A"; frequencies " 0.359447004608295 0.640552995391705"; depth 217 ; known ; synonymous GL193392.1 samtools variation 133116 133116 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193392.1 samtools variation 139071 139071 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL193394.1 samtools variation 224694 224694 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; synonymous GL193394.1 samtools variation 225157 225157 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193394.1 samtools variation 225996 225996 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL193395.1 samtools variation 42614 42614 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; non-synonymous GL193395.1 samtools variation 66835 66835 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; known ; non-synonymous GL193395.1 samtools variation 78645 78645 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193395.1 samtools variation 338324 338324 . . . alleles " A T"; frequencies " 0.287234042553192 0.712765957446808"; depth 94 ; unknown ; N/A GL193395.1 samtools variation 338787 338787 . . . alleles " A G"; frequencies " 0.410714285714286 0.589285714285714"; depth 448 ; unknown ; N/A GL193395.1 samtools variation 628709 628709 . . . alleles " C T"; frequencies " 0.348837209302326 0.651162790697674"; depth 43 ; unknown ; N/A GL193395.1 samtools variation 629190 629190 . . . alleles " T C"; frequencies " 0.397590361445783 0.602409638554217"; depth 83 ; unknown ; N/A GL193395.1 samtools variation 629270 629270 . . . alleles " G A"; frequencies " 0.431372549019608 0.568627450980392"; depth 102 ; unknown ; N/A GL193395.1 samtools variation 631443 631443 . . . alleles " C T"; frequencies " 0.290780141843972 0.709219858156028"; depth 141 ; unknown ; non-synonymous GL193396.1 samtools variation 383718 383718 . . . alleles " A T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL193396.1 samtools variation 387244 387244 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193396.1 samtools variation 390771 390771 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 90 ; unknown ; N/A GL193396.1 samtools variation 391184 391184 . . . alleles " C T"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; unknown ; N/A GL193396.1 samtools variation 391203 391203 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 40 ; unknown ; N/A GL193396.1 samtools variation 391455 391455 . . . alleles " T G"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL193396.1 samtools variation 391586 391586 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193396.1 samtools variation 391663 391663 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL193396.1 samtools variation 392113 392113 . . . alleles " A C"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL193396.1 samtools variation 394559 394559 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193396.1 samtools variation 394635 394635 . . . alleles " T A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193396.1 samtools variation 402872 402872 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL193396.1 samtools variation 403881 403881 . . . alleles " A G"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL193396.1 samtools variation 411236 411236 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193396.1 samtools variation 412721 412721 . . . alleles " C T"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL193396.1 samtools variation 414684 414684 . . . alleles " A G"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL193396.1 samtools variation 417232 417232 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193396.1 samtools variation 421155 421155 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193396.1 samtools variation 422827 422827 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193396.1 samtools variation 422946 422946 . . . alleles " G A"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; known ; N/A GL193396.1 samtools variation 423057 423057 . . . alleles " T G"; frequencies " 0.416666666666667 0.583333333333333"; depth 36 ; known ; N/A GL193396.1 samtools variation 423506 423506 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193396.1 samtools variation 423536 423536 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL193396.1 samtools variation 423745 423745 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193396.1 samtools variation 424005 424005 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL193396.1 samtools variation 424244 424244 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193396.1 samtools variation 425536 425536 . . . alleles " G A"; frequencies " 0.232558139534884 0.767441860465116"; depth 43 ; known ; N/A GL193396.1 samtools variation 425752 425752 . . . alleles " A G"; frequencies " 0.315789473684211 0.684210526315789"; depth 57 ; known ; N/A GL193396.1 samtools variation 425855 425855 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL193396.1 samtools variation 426391 426391 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 75 ; known ; N/A GL193396.1 samtools variation 431330 431330 . . . alleles " C T"; frequencies " 0.630769230769231 0.369230769230769"; depth 65 ; unknown ; N/A GL193396.1 samtools variation 432415 432415 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL193396.1 samtools variation 432775 432775 . . . alleles " T G"; frequencies " 0.324324324324324 0.675675675675676"; depth 37 ; known ; N/A GL193396.1 samtools variation 433919 433919 . . . alleles " G A"; frequencies " 0.74468085106383 0.25531914893617"; depth 47 ; unknown ; synonymous GL193396.1 samtools variation 435931 435931 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193396.1 samtools variation 441116 441116 . . . alleles " C T"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL193396.1 samtools variation 441200 441200 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 40 ; known ; N/A GL193396.1 samtools variation 441830 441830 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193396.1 samtools variation 442552 442552 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193396.1 samtools variation 443240 443240 . . . alleles " G A"; frequencies " 0.425531914893617 0.574468085106383"; depth 47 ; known ; non-synonymous GL193396.1 samtools variation 451316 451316 . . . alleles " A G"; frequencies " 0.322314049586777 0.677685950413223"; depth 121 ; known ; N/A GL193396.1 samtools variation 454292 454292 . . . alleles " G A"; frequencies " 0.475880052151239 0.524119947848761"; depth 767 ; known ; N/A GL193396.1 samtools variation 454976 454976 . . . alleles " G A"; frequencies " 0.331775700934579 0.668224299065421"; depth 642 ; known ; N/A GL193396.1 samtools variation 455001 455001 . . . alleles " G A"; frequencies " 0.350591715976331 0.649408284023669"; depth 676 ; known ; N/A GL193396.1 samtools variation 455035 455035 . . . alleles " G A"; frequencies " 0.701086956521739 0.298913043478261"; depth 552 ; known ; N/A GL193396.1 samtools variation 455074 455074 . . . alleles " A G"; frequencies " 0.670198675496689 0.329801324503311"; depth 755 ; known ; N/A GL193396.1 samtools variation 455173 455173 . . . alleles " G A"; frequencies " 0.293206197854589 0.706793802145411"; depth 839 ; known ; N/A GL193396.1 samtools variation 455383 455383 . . . alleles " A T"; frequencies " 0.530546623794212 0.469453376205788"; depth 311 ; known ; N/A GL193396.1 samtools variation 455459 455459 . . . alleles " T G"; frequencies " 0.348837209302326 0.651162790697674"; depth 215 ; known ; N/A GL193396.1 samtools variation 457258 457258 . . . alleles " G A"; frequencies " 0.39622641509434 0.60377358490566"; depth 106 ; known ; N/A GL193396.1 samtools variation 458034 458034 . . . alleles " G T"; frequencies " 0.297297297297297 0.702702702702703"; depth 37 ; known ; N/A GL193396.1 samtools variation 459329 459329 . . . alleles " T C"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; N/A GL193396.1 samtools variation 460223 460223 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 57 ; unknown ; N/A GL193396.1 samtools variation 461079 461079 . . . alleles " T C"; frequencies " 0.621359223300971 0.378640776699029"; depth 103 ; known ; N/A GL193396.1 samtools variation 461532 461532 . . . alleles " A G"; frequencies " 0.784810126582278 0.215189873417722"; depth 79 ; unknown ; N/A GL193396.1 samtools variation 461616 461616 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 55 ; unknown ; N/A GL193396.1 samtools variation 461678 461678 . . . alleles " G C"; frequencies " 0.434210526315789 0.368421052631579"; depth 76 ; unknown ; N/A GL193396.1 samtools variation 463312 463312 . . . alleles " T C"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; known ; N/A GL193396.1 samtools variation 463352 463352 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193396.1 samtools variation 466573 466573 . . . alleles " C T"; frequencies " 0.496894409937888 0.503105590062112"; depth 322 ; known ; N/A GL193396.1 samtools variation 546257 546257 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL193396.1 samtools variation 546288 546288 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193396.1 samtools variation 563069 563069 . . . alleles " G T"; frequencies " 0.747093023255814 0.25"; depth 344 ; known ; non-synonymous GL193396.1 samtools variation 563503 563503 . . . alleles " G A"; frequencies " 0.760932944606414 0.239067055393586"; depth 343 ; known ; N/A GL193396.1 samtools variation 563509 563509 . . . alleles " A G"; frequencies " 0.481927710843373 0.518072289156627"; depth 332 ; unknown ; N/A GL193396.1 samtools variation 607953 607953 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 48 ; known ; synonymous GL193396.1 samtools variation 653368 653368 . . . alleles " C G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL193396.1 samtools variation 653395 653395 . . . alleles " C T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL193396.1 samtools variation 653472 653472 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL193396.1 samtools variation 657576 657576 . . . alleles " C T"; frequencies " 0.389830508474576 0.610169491525424"; depth 118 ; known ; N/A GL193396.1 samtools variation 659520 659520 . . . alleles " G A"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL193396.1 samtools variation 659868 659868 . . . alleles " A G"; frequencies " 0.741379310344828 0.258620689655172"; depth 58 ; known ; N/A GL193396.1 samtools variation 659980 659980 . . . alleles " A T"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; known ; N/A GL193396.1 samtools variation 660219 660219 . . . alleles " T G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193396.1 samtools variation 660633 660633 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 55 ; unknown ; N/A GL193396.1 samtools variation 660702 660702 . . . alleles " C A"; frequencies " 0.433734939759036 0.566265060240964"; depth 83 ; known ; N/A GL193396.1 samtools variation 660782 660782 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 40 ; known ; N/A GL193396.1 samtools variation 660865 660865 . . . alleles " A G"; frequencies " 0.361111111111111 0.638888888888889"; depth 36 ; known ; N/A GL193396.1 samtools variation 705198 705198 . . . alleles " C A"; frequencies " 0.203389830508475 0.796610169491525"; depth 118 ; unknown ; N/A GL193396.1 samtools variation 705259 705259 . . . alleles " A G"; frequencies " 0.222972972972973 0.777027027027027"; depth 148 ; unknown ; N/A GL193396.1 samtools variation 705351 705351 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 136 ; unknown ; N/A GL193396.1 samtools variation 705389 705389 . . . alleles " C T"; frequencies " 0.227272727272727 0.772727272727273"; depth 44 ; unknown ; N/A GL193398.1 samtools variation 35501 35501 . . . alleles " G C"; frequencies " 0.653846153846154 0.346153846153846"; depth 104 ; known ; N/A GL193398.1 samtools variation 39826 39826 . . . alleles " G A"; frequencies " 0.355555555555556 0.644444444444444"; depth 45 ; unknown ; synonymous GL193398.1 samtools variation 42557 42557 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; synonymous GL193398.1 samtools variation 42932 42932 . . . alleles " C T"; frequencies " 0.489795918367347 0.510204081632653"; depth 49 ; unknown ; synonymous GL193398.1 samtools variation 45395 45395 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; non-synonymous GL193398.1 samtools variation 47749 47749 . . . alleles " C T"; frequencies " 0.441860465116279 0.558139534883721"; depth 86 ; unknown ; synonymous GL193398.1 samtools variation 47813 47813 . . . alleles " C T"; frequencies " 0.393939393939394 0.606060606060606"; depth 99 ; unknown ; N/A GL193398.1 samtools variation 48083 48083 . . . alleles " T G"; frequencies " 0.412371134020619 0.587628865979381"; depth 97 ; unknown ; N/A GL193398.1 samtools variation 48252 48252 . . . alleles " A G"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; N/A GL193398.1 samtools variation 48440 48440 . . . alleles " C G"; frequencies " 0.512820512820513 0.487179487179487"; depth 39 ; unknown ; N/A GL193398.1 samtools variation 48933 48933 . . . alleles " C T"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL193398.1 samtools variation 49020 49020 . . . alleles " C T"; frequencies " 0.342105263157895 0.657894736842105"; depth 38 ; unknown ; N/A GL193398.1 samtools variation 49582 49582 . . . alleles " A C"; frequencies " 0.421052631578947 0.578947368421053"; depth 76 ; unknown ; N/A GL193398.1 samtools variation 49925 49925 . . . alleles " A G"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL193398.1 samtools variation 50192 50192 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 60 ; unknown ; N/A GL193398.1 samtools variation 50293 50293 . . . alleles " C T"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; N/A GL193398.1 samtools variation 51345 51345 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193398.1 samtools variation 51554 51554 . . . alleles " G A"; frequencies " 0.65625 0.3125"; depth 32 ; unknown ; non-synonymous GL193398.1 samtools variation 51675 51675 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193398.1 samtools variation 51697 51697 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193398.1 samtools variation 53176 53176 . . . alleles " T G"; frequencies " 0.396103896103896 0.603896103896104"; depth 154 ; unknown ; synonymous GL193398.1 samtools variation 53254 53254 . . . alleles " T C"; frequencies " 0.341666666666667 0.658333333333333"; depth 120 ; unknown ; synonymous GL193398.1 samtools variation 57146 57146 . . . alleles " A T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193398.1 samtools variation 58240 58240 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193398.1 samtools variation 58347 58347 . . . alleles " A G"; frequencies " 0.798387096774194 0.201612903225806"; depth 124 ; unknown ; N/A GL193398.1 samtools variation 58385 58385 . . . alleles " A G"; frequencies " 0.294736842105263 0.705263157894737"; depth 95 ; unknown ; N/A GL193398.1 samtools variation 58431 58431 . . . alleles " A G"; frequencies " 0.669811320754717 0.330188679245283"; depth 106 ; unknown ; N/A GL193398.1 samtools variation 58455 58455 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 100 ; unknown ; N/A GL193398.1 samtools variation 63491 63491 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193398.1 samtools variation 84867 84867 . . . alleles " A C"; frequencies " 0.25 0.75"; depth 36 ; unknown ; N/A GL193398.1 samtools variation 86581 86581 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193398.1 samtools variation 86644 86644 . . . alleles " C T"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL193398.1 samtools variation 101318 101318 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193398.1 samtools variation 348136 348136 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL193398.1 samtools variation 500123 500123 . . . alleles " C T"; frequencies " 0.694300518134715 0.305699481865285"; depth 193 ; known ; synonymous GL193398.1 samtools variation 582895 582895 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; non-synonymous GL193398.1 samtools variation 584728 584728 . . . alleles " G A"; frequencies " 0.685185185185185 0.314814814814815"; depth 54 ; unknown ; N/A GL193398.1 samtools variation 588678 588678 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193398.1 samtools variation 671407 671407 . . . alleles " T C"; frequencies " 0.515625 0.484375"; depth 128 ; unknown ; non-synonymous GL193398.1 samtools variation 671772 671772 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 46 ; unknown ; synonymous GL193398.1 samtools variation 671867 671867 . . . alleles " C T"; frequencies " 0.453333333333333 0.546666666666667"; depth 75 ; unknown ; synonymous GL193398.1 samtools variation 684221 684221 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL193398.1 samtools variation 684312 684312 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193399.1 samtools variation 296578 296578 . . . alleles " G A"; frequencies " 0.796803652968037 0.203196347031963"; depth 438 ; unknown ; N/A GL193399.1 samtools variation 401613 401613 . . . alleles " C A"; frequencies " 0.649006622516556 0.350993377483444"; depth 151 ; unknown ; synonymous GL193399.1 samtools variation 518248 518248 . . . alleles " T A"; frequencies " 0.382352941176471 0.617647058823529"; depth 34 ; known ; N/A GL193399.1 samtools variation 628131 628131 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193399.1 samtools variation 639580 639580 . . . alleles " T C"; frequencies " 0.65034965034965 0.34965034965035"; depth 143 ; unknown ; N/A GL193399.1 samtools variation 639667 639667 . . . alleles " T C"; frequencies " 0.676767676767677 0.323232323232323"; depth 99 ; unknown ; N/A GL193399.1 samtools variation 642192 642192 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193399.1 samtools variation 681184 681184 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL193401.1 samtools variation 288156 288156 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193401.1 samtools variation 288239 288239 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193401.1 samtools variation 315882 315882 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; synonymous GL193401.1 samtools variation 320064 320064 . . . alleles " G A"; frequencies " 0.417721518987342 0.582278481012658"; depth 79 ; unknown ; synonymous GL193401.1 samtools variation 336764 336764 . . . alleles " T C"; frequencies " 0.373239436619718 0.626760563380282"; depth 142 ; unknown ; synonymous GL193401.1 samtools variation 337540 337540 . . . alleles " C T"; frequencies " 0.508771929824561 0.491228070175439"; depth 114 ; unknown ; synonymous GL193401.1 samtools variation 341924 341924 . . . alleles " T C"; frequencies " 0.78 0.22"; depth 150 ; unknown ; synonymous GL193403.1 samtools variation 305333 305333 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL193403.1 samtools variation 539181 539181 . . . alleles " A T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193403.1 samtools variation 556686 556686 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL193403.1 samtools variation 565389 565389 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL193403.1 samtools variation 569511 569511 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL193403.1 samtools variation 575342 575342 . . . alleles " A G"; frequencies " 0.565714285714286 0.434285714285714"; depth 175 ; known ; N/A GL193403.1 samtools variation 575978 575978 . . . alleles " C T"; frequencies " 0.351063829787234 0.646808510638298"; depth 470 ; known ; N/A GL193403.1 samtools variation 576789 576789 . . . alleles " G A"; frequencies " 0.355813953488372 0.644186046511628"; depth 430 ; known ; N/A GL193403.1 samtools variation 577876 577876 . . . alleles " T G"; frequencies " 0.476190476190476 0.523809523809524"; depth 42 ; known ; N/A GL193403.1 samtools variation 580310 580310 . . . alleles " C T"; frequencies " 0.57847533632287 0.42152466367713"; depth 223 ; unknown ; N/A GL193403.1 samtools variation 580376 580376 . . . alleles " A G"; frequencies " 0.619318181818182 0.380681818181818"; depth 176 ; unknown ; N/A GL193403.1 samtools variation 580731 580731 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 60 ; known ; N/A GL193403.1 samtools variation 580874 580874 . . . alleles " C A"; frequencies " 0.754716981132076 0.245283018867925"; depth 53 ; unknown ; N/A GL193403.1 samtools variation 581236 581236 . . . alleles " T C"; frequencies " 0.76551724137931 0.23448275862069"; depth 145 ; unknown ; N/A GL193403.1 samtools variation 581494 581494 . . . alleles " A G"; frequencies " 0.712765957446808 0.287234042553192"; depth 94 ; known ; N/A GL193403.1 samtools variation 581579 581579 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL193403.1 samtools variation 583308 583308 . . . alleles " G A"; frequencies " 0.323529411764706 0.676470588235294"; depth 170 ; known ; N/A GL193403.1 samtools variation 584258 584258 . . . alleles " C T"; frequencies " 0.763440860215054 0.236559139784946"; depth 93 ; unknown ; N/A GL193403.1 samtools variation 584748 584748 . . . alleles " A G"; frequencies " 0.508771929824561 0.491228070175439"; depth 57 ; known ; N/A GL193403.1 samtools variation 592654 592654 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193403.1 samtools variation 599911 599911 . . . alleles " A C"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; N/A GL193403.1 samtools variation 599912 599912 . . . alleles " G C"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; N/A GL193403.1 samtools variation 604563 604563 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193403.1 samtools variation 613674 613674 . . . alleles " G A"; frequencies " 0.723076923076923 0.276923076923077"; depth 130 ; unknown ; N/A GL193403.1 samtools variation 613953 613953 . . . alleles " A G"; frequencies " 0.406896551724138 0.593103448275862"; depth 145 ; unknown ; N/A GL193403.1 samtools variation 618410 618410 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL193403.1 samtools variation 618564 618564 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193403.1 samtools variation 618583 618583 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193403.1 samtools variation 618620 618620 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193403.1 samtools variation 618864 618864 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL193403.1 samtools variation 619319 619319 . . . alleles " A G"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL193403.1 samtools variation 621037 621037 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 40 ; unknown ; N/A GL193403.1 samtools variation 621180 621180 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL193403.1 samtools variation 623752 623752 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193403.1 samtools variation 625270 625270 . . . alleles " C T"; frequencies " 0.701754385964912 0.298245614035088"; depth 57 ; unknown ; N/A GL193403.1 samtools variation 627788 627788 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL193403.1 samtools variation 638987 638987 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193403.1 samtools variation 639043 639043 . . . alleles " C T"; frequencies " 0.54 0.46"; depth 50 ; unknown ; N/A GL193403.1 samtools variation 639186 639186 . . . alleles " C A"; frequencies " 0.634920634920635 0.365079365079365"; depth 63 ; unknown ; N/A GL193403.1 samtools variation 639207 639207 . . . alleles " G A"; frequencies " 0.796875 0.203125"; depth 64 ; unknown ; N/A GL193403.1 samtools variation 639548 639548 . . . alleles " T C"; frequencies " 0.657894736842105 0.342105263157895"; depth 114 ; unknown ; N/A GL193403.1 samtools variation 676980 676980 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193403.1 samtools variation 677015 677015 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL193403.1 samtools variation 677925 677925 . . . alleles " T C"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; unknown ; N/A GL193403.1 samtools variation 680442 680442 . . . alleles " C T"; frequencies " 0.324324324324324 0.675675675675676"; depth 37 ; known ; N/A GL193403.1 samtools variation 680585 680585 . . . alleles " C T"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; unknown ; N/A GL193403.1 samtools variation 681266 681266 . . . alleles " A C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193403.1 samtools variation 682833 682833 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193405.1 samtools variation 18345 18345 . . . alleles " A G"; frequencies " 0.557692307692308 0.442307692307692"; depth 104 ; unknown ; N/A GL193405.1 samtools variation 57722 57722 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193405.1 samtools variation 57865 57865 . . . alleles " G T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193405.1 samtools variation 58740 58740 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL193405.1 samtools variation 121306 121306 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193405.1 samtools variation 121448 121448 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193405.1 samtools variation 132521 132521 . . . alleles " A G"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; unknown ; synonymous GL193405.1 samtools variation 140477 140477 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193405.1 samtools variation 140732 140732 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193405.1 samtools variation 175182 175182 . . . alleles " T C"; frequencies " 0.683760683760684 0.316239316239316"; depth 117 ; known ; non-synonymous GL193405.1 samtools variation 201763 201763 . . . alleles " C A"; frequencies " 0.699421965317919 0.300578034682081"; depth 173 ; known ; synonymous GL193405.1 samtools variation 224439 224439 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193405.1 samtools variation 229352 229352 . . . alleles " G T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193405.1 samtools variation 229834 229834 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193405.1 samtools variation 236082 236082 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193405.1 samtools variation 236104 236104 . . . alleles " G T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193405.1 samtools variation 238881 238881 . . . alleles " C T"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL193405.1 samtools variation 241412 241412 . . . alleles " T G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193405.1 samtools variation 251562 251562 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193405.1 samtools variation 257225 257225 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193405.1 samtools variation 257371 257371 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL193405.1 samtools variation 264669 264669 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL193405.1 samtools variation 265359 265359 . . . alleles " A T"; frequencies " 0.611486486486487 0.388513513513513"; depth 296 ; known ; N/A GL193406.1 samtools variation 294691 294691 . . . alleles " G A"; frequencies " 0.794392523364486 0.205607476635514"; depth 107 ; known ; N/A GL193407.1 samtools variation 178794 178794 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193407.1 samtools variation 234837 234837 . . . alleles " A C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; synonymous GL193408.1 samtools variation 645244 645244 . . . alleles " C T"; frequencies " 0.608510638297872 0.391489361702128"; depth 470 ; unknown ; N/A GL193408.1 samtools variation 645318 645318 . . . alleles " A C"; frequencies " 0.720090293453725 0.279909706546275"; depth 443 ; unknown ; N/A GL193408.1 samtools variation 645877 645877 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 66 ; known ; N/A GL193408.1 samtools variation 648362 648362 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL193408.1 samtools variation 649359 649359 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; N/A GL193408.1 samtools variation 654018 654018 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193408.1 samtools variation 654564 654564 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193408.1 samtools variation 660369 660369 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193408.1 samtools variation 707184 707184 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 28 ; known ; N/A GL193409.1 samtools variation 248642 248642 . . . alleles " C A"; frequencies " 0.382352941176471 0.617647058823529"; depth 34 ; known ; N/A GL193409.1 samtools variation 265281 265281 . . . alleles " C A"; frequencies " 0.574468085106383 0.425531914893617"; depth 47 ; unknown ; N/A GL193409.1 samtools variation 270164 270164 . . . alleles " G A"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; unknown ; N/A GL193409.1 samtools variation 291951 291951 . . . alleles " C A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193409.1 samtools variation 295178 295178 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193409.1 samtools variation 441986 441986 . . . alleles " A G"; frequencies " 0.413793103448276 0.586206896551724"; depth 87 ; known ; N/A GL193409.1 samtools variation 443266 443266 . . . alleles " A C"; frequencies " 0.757493188010899 0.242506811989101"; depth 367 ; unknown ; N/A GL193409.1 samtools variation 448389 448389 . . . alleles " G A"; frequencies " 0.621739130434783 0.378260869565217"; depth 230 ; unknown ; synonymous GL193409.1 samtools variation 448591 448591 . . . alleles " A G"; frequencies " 0.463768115942029 0.536231884057971"; depth 138 ; known ; N/A GL193409.1 samtools variation 449725 449725 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193411.1 samtools variation 388642 388642 . . . alleles " C G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193411.1 samtools variation 415111 415111 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193411.1 samtools variation 415142 415142 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193411.1 samtools variation 415179 415179 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193411.1 samtools variation 420145 420145 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193411.1 samtools variation 420432 420432 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193411.1 samtools variation 421727 421727 . . . alleles " G A"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL193411.1 samtools variation 423764 423764 . . . alleles " C T"; frequencies " 0.720930232558139 0.27906976744186"; depth 43 ; known ; N/A GL193411.1 samtools variation 424386 424386 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 25 ; known ; N/A GL193411.1 samtools variation 425853 425853 . . . alleles " T A"; frequencies " 0.361111111111111 0.638888888888889"; depth 36 ; known ; N/A GL193411.1 samtools variation 425864 425864 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 36 ; known ; N/A GL193411.1 samtools variation 427419 427419 . . . alleles " T C"; frequencies " 0.694915254237288 0.305084745762712"; depth 59 ; known ; N/A GL193411.1 samtools variation 427562 427562 . . . alleles " T C"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; known ; N/A GL193411.1 samtools variation 427610 427610 . . . alleles " C T"; frequencies " 0.288888888888889 0.711111111111111"; depth 45 ; known ; N/A GL193411.1 samtools variation 427662 427662 . . . alleles " A G"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; known ; N/A GL193411.1 samtools variation 427772 427772 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193411.1 samtools variation 427777 427777 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193411.1 samtools variation 428635 428635 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL193411.1 samtools variation 428676 428676 . . . alleles " G A"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL193411.1 samtools variation 429039 429039 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL193411.1 samtools variation 429267 429267 . . . alleles " A G"; frequencies " 0.607142857142857 0.392857142857143"; depth 56 ; known ; N/A GL193411.1 samtools variation 429403 429403 . . . alleles " T C"; frequencies " 0.386666666666667 0.613333333333333"; depth 75 ; known ; N/A GL193411.1 samtools variation 429750 429750 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL193411.1 samtools variation 434461 434461 . . . alleles " C T"; frequencies " 0.228021978021978 0.771978021978022"; depth 364 ; known ; synonymous GL193411.1 samtools variation 437810 437810 . . . alleles " G A"; frequencies " 0.200980392156863 0.79656862745098"; depth 408 ; known ; synonymous GL193411.1 samtools variation 438177 438177 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL193411.1 samtools variation 439728 439728 . . . alleles " C A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; known ; N/A GL193411.1 samtools variation 439879 439879 . . . alleles " T C"; frequencies " 0.270207852193995 0.729792147806005"; depth 433 ; known ; synonymous GL193411.1 samtools variation 441611 441611 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 24 ; known ; N/A GL193411.1 samtools variation 444837 444837 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193411.1 samtools variation 453405 453405 . . . alleles " A G"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL193411.1 samtools variation 454005 454005 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193411.1 samtools variation 461770 461770 . . . alleles " A C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193411.1 samtools variation 461772 461772 . . . alleles " A C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193411.1 samtools variation 462011 462011 . . . alleles " T A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193411.1 samtools variation 468453 468453 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 32 ; known ; N/A GL193411.1 samtools variation 471312 471312 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193411.1 samtools variation 480976 480976 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193411.1 samtools variation 483251 483251 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193411.1 samtools variation 484861 484861 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193411.1 samtools variation 492062 492062 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193411.1 samtools variation 495928 495928 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193411.1 samtools variation 497639 497639 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193411.1 samtools variation 497837 497837 . . . alleles " T G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL193411.1 samtools variation 498512 498512 . . . alleles " T C"; frequencies " 0.217564870259481 0.782435129740519"; depth 501 ; known ; non-synonymous GL193411.1 samtools variation 498780 498780 . . . alleles " G A"; frequencies " 0.607954545454545 0.392045454545455"; depth 176 ; unknown ; synonymous GL193411.1 samtools variation 513024 513024 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL193411.1 samtools variation 518157 518157 . . . alleles " C T"; frequencies " 0.706666666666667 0.293333333333333"; depth 75 ; unknown ; N/A GL193411.1 samtools variation 518424 518424 . . . alleles " A C"; frequencies " 0.515625 0.484375"; depth 64 ; unknown ; N/A GL193411.1 samtools variation 518551 518551 . . . alleles " A G"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL193411.1 samtools variation 519253 519253 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 70 ; unknown ; N/A GL193411.1 samtools variation 521003 521003 . . . alleles " A G"; frequencies " 0.771428571428571 0.228571428571429"; depth 70 ; unknown ; N/A GL193411.1 samtools variation 522554 522554 . . . alleles " G A"; frequencies " 0.758064516129032 0.241935483870968"; depth 62 ; unknown ; N/A GL193411.1 samtools variation 524127 524127 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL193411.1 samtools variation 524333 524333 . . . alleles " A T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193411.1 samtools variation 524466 524466 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193411.1 samtools variation 527887 527887 . . . alleles " G C"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL193411.1 samtools variation 528154 528154 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL193411.1 samtools variation 528979 528979 . . . alleles " T C"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL193411.1 samtools variation 529081 529081 . . . alleles " A C"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; N/A GL193411.1 samtools variation 529727 529727 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193411.1 samtools variation 529787 529787 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193411.1 samtools variation 529826 529826 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193411.1 samtools variation 530082 530082 . . . alleles " A T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL193411.1 samtools variation 530088 530088 . . . alleles " A C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL193411.1 samtools variation 530206 530206 . . . alleles " A G"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL193411.1 samtools variation 530388 530388 . . . alleles " A G"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL193411.1 samtools variation 532813 532813 . . . alleles " A G"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL193411.1 samtools variation 532894 532894 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL193411.1 samtools variation 533869 533869 . . . alleles " C T"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL193411.1 samtools variation 535178 535178 . . . alleles " T A"; frequencies " 0.611940298507463 0.388059701492537"; depth 67 ; known ; N/A GL193411.1 samtools variation 535210 535210 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 56 ; unknown ; N/A GL193411.1 samtools variation 536293 536293 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL193411.1 samtools variation 536326 536326 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193411.1 samtools variation 537480 537480 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193411.1 samtools variation 537788 537788 . . . alleles " G A"; frequencies " 0.539473684210526 0.460526315789474"; depth 76 ; unknown ; synonymous GL193411.1 samtools variation 539314 539314 . . . alleles " G A"; frequencies " 0.602941176470588 0.397058823529412"; depth 68 ; unknown ; synonymous GL193411.1 samtools variation 602705 602705 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193411.1 samtools variation 604970 604970 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193411.1 samtools variation 663540 663540 . . . alleles " G C"; frequencies " 0.662790697674419 0.337209302325581"; depth 86 ; unknown ; non-synonymous GL193411.1 samtools variation 664075 664075 . . . alleles " A C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL193411.1 samtools variation 665673 665673 . . . alleles " A T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193411.1 samtools variation 665909 665909 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193411.1 samtools variation 665928 665928 . . . alleles " C G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193411.1 samtools variation 667303 667303 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193411.1 samtools variation 667322 667322 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193411.1 samtools variation 667346 667346 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193411.1 samtools variation 668471 668471 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193411.1 samtools variation 670755 670755 . . . alleles " A G"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL193411.1 samtools variation 671390 671390 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL193411.1 samtools variation 671640 671640 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL193411.1 samtools variation 671709 671709 . . . alleles " C T"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; known ; N/A GL193411.1 samtools variation 672606 672606 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193411.1 samtools variation 672620 672620 . . . alleles " C T"; frequencies " 0.555555555555556 0.277777777777778"; depth 18 ; unknown ; N/A GL193411.1 samtools variation 686783 686783 . . . alleles " A G"; frequencies " 0.784615384615385 0.215384615384615"; depth 65 ; unknown ; N/A GL193411.1 samtools variation 686854 686854 . . . alleles " A G"; frequencies " 0.594594594594595 0.405405405405405"; depth 74 ; unknown ; N/A GL193411.1 samtools variation 687000 687000 . . . alleles " C A"; frequencies " 0.790322580645161 0.209677419354839"; depth 62 ; unknown ; N/A GL193411.1 samtools variation 687021 687021 . . . alleles " T C"; frequencies " 0.666666666666667 0.313725490196078"; depth 51 ; unknown ; N/A GL193411.1 samtools variation 687084 687084 . . . alleles " T C"; frequencies " 0.547169811320755 0.452830188679245"; depth 53 ; unknown ; N/A GL193411.1 samtools variation 687899 687899 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193411.1 samtools variation 687917 687917 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193411.1 samtools variation 697170 697170 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193412.1 samtools variation 5971 5971 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; synonymous GL193412.1 samtools variation 9225 9225 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193412.1 samtools variation 66281 66281 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193412.1 samtools variation 100419 100419 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193412.1 samtools variation 103740 103740 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL193412.1 samtools variation 106846 106846 . . . alleles " A G"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL193412.1 samtools variation 108335 108335 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193412.1 samtools variation 108844 108844 . . . alleles " G A"; frequencies " 0.695402298850575 0.304597701149425"; depth 174 ; unknown ; N/A GL193412.1 samtools variation 122746 122746 . . . alleles " T C"; frequencies " 0.678571428571429 0.321428571428571"; depth 168 ; unknown ; non-synonymous GL193412.1 samtools variation 128908 128908 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193412.1 samtools variation 198530 198530 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193412.1 samtools variation 279436 279436 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193412.1 samtools variation 392361 392361 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193412.1 samtools variation 410573 410573 . . . alleles " T C"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193412.1 samtools variation 456823 456823 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 155 ; unknown ; N/A GL193412.1 samtools variation 457017 457017 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; unknown ; N/A GL193412.1 samtools variation 457510 457510 . . . alleles " G A"; frequencies " 0.793650793650794 0.206349206349206"; depth 252 ; unknown ; N/A GL193412.1 samtools variation 457511 457511 . . . alleles " C A"; frequencies " 0.792828685258964 0.207171314741036"; depth 251 ; unknown ; N/A GL193412.1 samtools variation 502838 502838 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL193412.1 samtools variation 507824 507824 . . . alleles " A C"; frequencies " 0.649068322981366 0.350931677018634"; depth 322 ; unknown ; N/A GL193412.1 samtools variation 508290 508290 . . . alleles " C T"; frequencies " 0.672256097560976 0.327743902439024"; depth 656 ; unknown ; N/A GL193412.1 samtools variation 508779 508779 . . . alleles " C T"; frequencies " 0.772397094430993 0.227602905569007"; depth 826 ; known ; N/A GL193412.1 samtools variation 511036 511036 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL193412.1 samtools variation 511049 511049 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193412.1 samtools variation 514397 514397 . . . alleles " G A"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL193412.1 samtools variation 529642 529642 . . . alleles " G C"; frequencies " 0.649122807017544 0.350877192982456"; depth 57 ; unknown ; N/A GL193412.1 samtools variation 537550 537550 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193412.1 samtools variation 571358 571358 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL193412.1 samtools variation 577959 577959 . . . alleles " T A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL193412.1 samtools variation 591008 591008 . . . alleles " C T"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL193412.1 samtools variation 641014 641014 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL193412.1 samtools variation 645774 645774 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 69 ; known ; N/A GL193412.1 samtools variation 647348 647348 . . . alleles " C T"; frequencies " 0.63013698630137 0.36986301369863"; depth 73 ; known ; N/A GL193412.1 samtools variation 653983 653983 . . . alleles " T C"; frequencies " 0.661971830985915 0.338028169014085"; depth 71 ; known ; non-synonymous GL193418.1 samtools variation 87489 87489 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193418.1 samtools variation 87491 87491 . . . alleles " T G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193418.1 samtools variation 88311 88311 . . . alleles " C T"; frequencies " 0.7625 0.2375"; depth 80 ; unknown ; synonymous GL193418.1 samtools variation 467520 467520 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL193418.1 samtools variation 467532 467532 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193418.1 samtools variation 468736 468736 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193418.1 samtools variation 468802 468802 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193418.1 samtools variation 470620 470620 . . . alleles " A T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL193418.1 samtools variation 470727 470727 . . . alleles " G A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL193418.1 samtools variation 474035 474035 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193418.1 samtools variation 478100 478100 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193418.1 samtools variation 479031 479031 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193418.1 samtools variation 479032 479032 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL193418.1 samtools variation 479067 479067 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193418.1 samtools variation 481875 481875 . . . alleles " C A"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; unknown ; N/A GL193418.1 samtools variation 484919 484919 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 434 ; unknown ; N/A GL193418.1 samtools variation 485099 485099 . . . alleles " G T"; frequencies " 0.793650793650794 0.206349206349206"; depth 567 ; unknown ; N/A GL193418.1 samtools variation 485328 485328 . . . alleles " C T"; frequencies " 0.675 0.325"; depth 400 ; unknown ; N/A GL193418.1 samtools variation 487651 487651 . . . alleles " C G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193418.1 samtools variation 488555 488555 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; synonymous GL193418.1 samtools variation 630521 630521 . . . alleles " C A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193418.1 samtools variation 635082 635082 . . . alleles " T C"; frequencies " 0.439024390243902 0.560975609756098"; depth 41 ; unknown ; N/A GL193421.1 samtools variation 194115 194115 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193421.1 samtools variation 195396 195396 . . . alleles " G C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL193421.1 samtools variation 195422 195422 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193421.1 samtools variation 196435 196435 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193421.1 samtools variation 197437 197437 . . . alleles " G C"; frequencies " 0.52753108348135 0.47246891651865"; depth 563 ; known ; N/A GL193421.1 samtools variation 198698 198698 . . . alleles " A C"; frequencies " 0.71301775147929 0.28698224852071"; depth 338 ; unknown ; N/A GL193421.1 samtools variation 199029 199029 . . . alleles " T C"; frequencies " 0.753351206434316 0.246648793565684"; depth 746 ; unknown ; synonymous GL193421.1 samtools variation 199229 199229 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193421.1 samtools variation 199353 199353 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193421.1 samtools variation 199377 199377 . . . alleles " G C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193421.1 samtools variation 199490 199490 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193421.1 samtools variation 199601 199601 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193421.1 samtools variation 199825 199825 . . . alleles " A G"; frequencies " 0.744186046511628 0.255813953488372"; depth 43 ; unknown ; N/A GL193421.1 samtools variation 200125 200125 . . . alleles " T A"; frequencies " 0.333333333333333 0.666666666666667"; depth 39 ; known ; N/A GL193421.1 samtools variation 200757 200757 . . . alleles " C G"; frequencies " 0.793103448275862 0.206896551724138"; depth 87 ; unknown ; synonymous GL193421.1 samtools variation 202323 202323 . . . alleles " A G"; frequencies " 0.748373101952278 0.251626898047722"; depth 461 ; unknown ; synonymous GL193421.1 samtools variation 202442 202442 . . . alleles " C T"; frequencies " 0.795652173913043 0.204347826086957"; depth 230 ; unknown ; non-synonymous GL193421.1 samtools variation 203237 203237 . . . alleles " A G"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; known ; N/A GL193421.1 samtools variation 203778 203778 . . . alleles " G A"; frequencies " 0.716556291390729 0.283443708609272"; depth 755 ; unknown ; non-synonymous GL193421.1 samtools variation 206539 206539 . . . alleles " G A"; frequencies " 0.781021897810219 0.218978102189781"; depth 137 ; unknown ; N/A GL193421.1 samtools variation 206946 206946 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193421.1 samtools variation 210180 210180 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193421.1 samtools variation 212902 212902 . . . alleles " A G"; frequencies " 0.730688935281837 0.269311064718163"; depth 479 ; unknown ; synonymous GL193421.1 samtools variation 220473 220473 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 72 ; known ; N/A GL193421.1 samtools variation 231691 231691 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193421.1 samtools variation 247699 247699 . . . alleles " G A"; frequencies " 0.77710843373494 0.22289156626506"; depth 332 ; unknown ; N/A GL193421.1 samtools variation 248052 248052 . . . alleles " C T"; frequencies " 0.729241877256318 0.270758122743682"; depth 277 ; known ; N/A GL193421.1 samtools variation 442341 442341 . . . alleles " A G"; frequencies " 0.306451612903226 0.693548387096774"; depth 62 ; known ; N/A GL193421.1 samtools variation 442938 442938 . . . alleles " G T"; frequencies " 0.285714285714286 0.714285714285714"; depth 49 ; known ; N/A GL193421.1 samtools variation 447208 447208 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 35 ; known ; N/A GL193421.1 samtools variation 575210 575210 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193421.1 samtools variation 575249 575249 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193421.1 samtools variation 589111 589111 . . . alleles " T A"; frequencies " 0.71304347826087 0.28695652173913"; depth 115 ; known ; N/A GL193421.1 samtools variation 594260 594260 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193421.1 samtools variation 604046 604046 . . . alleles " G A"; frequencies " 0.447488584474886 0.552511415525114"; depth 219 ; known ; N/A GL193421.1 samtools variation 653022 653022 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193421.1 samtools variation 694487 694487 . . . alleles " A C"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; known ; N/A GL193421.1 samtools variation 694606 694606 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193421.1 samtools variation 694861 694861 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193422.1 samtools variation 94070 94070 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL193422.1 samtools variation 94158 94158 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193422.1 samtools variation 94983 94983 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193422.1 samtools variation 94984 94984 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193422.1 samtools variation 96450 96450 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; synonymous GL193422.1 samtools variation 97287 97287 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; synonymous GL193422.1 samtools variation 107045 107045 . . . alleles " T G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; synonymous GL193422.1 samtools variation 141561 141561 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; known ; synonymous GL193422.1 samtools variation 152193 152193 . . . alleles " T C"; frequencies " 0.396825396825397 0.603174603174603"; depth 126 ; known ; N/A GL193422.1 samtools variation 153760 153760 . . . alleles " T A"; frequencies " 0.313253012048193 0.686746987951807"; depth 166 ; known ; N/A GL193422.1 samtools variation 153870 153870 . . . alleles " G A"; frequencies " 0.64957264957265 0.35042735042735"; depth 117 ; known ; N/A GL193422.1 samtools variation 156522 156522 . . . alleles " T G"; frequencies " 0.327160493827161 0.672839506172839"; depth 162 ; known ; N/A GL193422.1 samtools variation 255064 255064 . . . alleles " C T"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL193422.1 samtools variation 255090 255090 . . . alleles " T G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193422.1 samtools variation 256119 256119 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193422.1 samtools variation 257116 257116 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 40 ; unknown ; N/A GL193422.1 samtools variation 257799 257799 . . . alleles " A C"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL193422.1 samtools variation 258191 258191 . . . alleles " C T"; frequencies " 0.788617886178862 0.211382113821138"; depth 246 ; unknown ; synonymous GL193422.1 samtools variation 258562 258562 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL193422.1 samtools variation 258726 258726 . . . alleles " G A"; frequencies " 0.607594936708861 0.392405063291139"; depth 79 ; unknown ; N/A GL193422.1 samtools variation 258856 258856 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193422.1 samtools variation 284865 284865 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL193422.1 samtools variation 285639 285639 . . . alleles " T C"; frequencies " 0.637362637362637 0.362637362637363"; depth 91 ; unknown ; N/A GL193422.1 samtools variation 286541 286541 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 34 ; unknown ; N/A GL193422.1 samtools variation 286745 286745 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL193422.1 samtools variation 287286 287286 . . . alleles " C T"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; unknown ; N/A GL193422.1 samtools variation 288250 288250 . . . alleles " A G"; frequencies " 0.459119496855346 0.540880503144654"; depth 159 ; unknown ; synonymous GL193422.1 samtools variation 288550 288550 . . . alleles " A G"; frequencies " 0.735849056603774 0.264150943396226"; depth 53 ; unknown ; N/A GL193422.1 samtools variation 288614 288614 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL193422.1 samtools variation 319005 319005 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193422.1 samtools variation 421344 421344 . . . alleles " G C"; frequencies " 0.74 0.26"; depth 50 ; unknown ; N/A GL193422.1 samtools variation 456678 456678 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193423.1 samtools variation 456347 456347 . . . alleles " G C"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL193423.1 samtools variation 460059 460059 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 36 ; unknown ; synonymous GL193423.1 samtools variation 460081 460081 . . . alleles " T C"; frequencies " 0.736 0.264"; depth 125 ; unknown ; non-synonymous GL193423.1 samtools variation 460182 460182 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 189 ; unknown ; synonymous GL193423.1 samtools variation 460314 460314 . . . alleles " T C"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; synonymous GL193423.1 samtools variation 476445 476445 . . . alleles " A G"; frequencies " 0.582089552238806 0.417910447761194"; depth 134 ; unknown ; non-synonymous GL193423.1 samtools variation 484312 484312 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; non-synonymous GL193423.1 samtools variation 484369 484369 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; non-synonymous GL193423.1 samtools variation 484481 484481 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; synonymous GL193426.1 samtools variation 11469 11469 . . . alleles " G A"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; unknown ; N/A GL193426.1 samtools variation 11775 11775 . . . alleles " C T"; frequencies " 0.675 0.325"; depth 40 ; unknown ; N/A GL193426.1 samtools variation 13347 13347 . . . alleles " T C"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL193426.1 samtools variation 15291 15291 . . . alleles " G A"; frequencies " 0.562862669245648 0.437137330754352"; depth 517 ; known ; non-synonymous GL193426.1 samtools variation 15358 15358 . . . alleles " G A"; frequencies " 0.763888888888889 0.236111111111111"; depth 432 ; unknown ; synonymous GL193426.1 samtools variation 15361 15361 . . . alleles " A G"; frequencies " 0.738317757009346 0.261682242990654"; depth 428 ; unknown ; synonymous GL193426.1 samtools variation 16056 16056 . . . alleles " G C"; frequencies " 0.783132530120482 0.216867469879518"; depth 83 ; unknown ; N/A GL193426.1 samtools variation 16424 16424 . . . alleles " T A"; frequencies " 0.777777777777778 0.217171717171717"; depth 198 ; unknown ; N/A GL193426.1 samtools variation 16697 16697 . . . alleles " C T"; frequencies " 0.790697674418605 0.209302325581395"; depth 86 ; unknown ; N/A GL193426.1 samtools variation 16727 16727 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 69 ; unknown ; N/A GL193426.1 samtools variation 16897 16897 . . . alleles " A G"; frequencies " 0.711805555555556 0.288194444444444"; depth 288 ; unknown ; N/A GL193426.1 samtools variation 16956 16956 . . . alleles " G T"; frequencies " 0.627906976744186 0.372093023255814"; depth 172 ; unknown ; N/A GL193426.1 samtools variation 17043 17043 . . . alleles " G A"; frequencies " 0.584795321637427 0.415204678362573"; depth 171 ; unknown ; N/A GL193426.1 samtools variation 17876 17876 . . . alleles " C G"; frequencies " 0.779527559055118 0.220472440944882"; depth 127 ; unknown ; N/A GL193426.1 samtools variation 17879 17879 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 126 ; unknown ; N/A GL193426.1 samtools variation 18130 18130 . . . alleles " T C"; frequencies " 0.562189054726368 0.437810945273632"; depth 201 ; unknown ; N/A GL193426.1 samtools variation 18196 18196 . . . alleles " G C"; frequencies " 0.415094339622642 0.584905660377358"; depth 159 ; unknown ; N/A GL193426.1 samtools variation 18483 18483 . . . alleles " G C"; frequencies " 0.217247097844113 0.782752902155887"; depth 603 ; unknown ; non-synonymous GL193426.1 samtools variation 46824 46824 . . . alleles " G C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193426.1 samtools variation 55725 55725 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL193426.1 samtools variation 60212 60212 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; unknown ; N/A GL193426.1 samtools variation 60447 60447 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL193426.1 samtools variation 60851 60851 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 147 ; unknown ; N/A GL193426.1 samtools variation 132119 132119 . . . alleles " T C"; frequencies " 0.798657718120805 0.201342281879195"; depth 149 ; known ; N/A GL193426.1 samtools variation 132832 132832 . . . alleles " T G"; frequencies " 0.740157480314961 0.259842519685039"; depth 127 ; unknown ; N/A GL193426.1 samtools variation 133275 133275 . . . alleles " G A"; frequencies " 0.560606060606061 0.439393939393939"; depth 66 ; unknown ; N/A GL193426.1 samtools variation 133306 133306 . . . alleles " G T"; frequencies " 0.316455696202532 0.683544303797468"; depth 79 ; unknown ; non-synonymous GL193426.1 samtools variation 133374 133374 . . . alleles " A G"; frequencies " 0.747368421052632 0.252631578947368"; depth 95 ; known ; synonymous GL193426.1 samtools variation 141487 141487 . . . alleles " T C"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; known ; synonymous GL193426.1 samtools variation 143209 143209 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 50 ; known ; synonymous GL193426.1 samtools variation 176736 176736 . . . alleles " G A"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; unknown ; N/A GL193426.1 samtools variation 208535 208535 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193426.1 samtools variation 210747 210747 . . . alleles " G A"; frequencies " 0.548295454545455 0.451704545454545"; depth 352 ; unknown ; N/A GL193426.1 samtools variation 212222 212222 . . . alleles " A C"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; unknown ; N/A GL193426.1 samtools variation 212270 212270 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL193426.1 samtools variation 212435 212435 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193426.1 samtools variation 212690 212690 . . . alleles " A G"; frequencies " 0.486631016042781 0.513368983957219"; depth 187 ; unknown ; synonymous GL193426.1 samtools variation 214080 214080 . . . alleles " G C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; non-synonymous GL193426.1 samtools variation 214290 214290 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; non-synonymous GL193426.1 samtools variation 217015 217015 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 96 ; unknown ; synonymous GL193426.1 samtools variation 217036 217036 . . . alleles " A G"; frequencies " 0.574074074074074 0.425925925925926"; depth 108 ; unknown ; synonymous GL193426.1 samtools variation 223002 223002 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193426.1 samtools variation 224116 224116 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193426.1 samtools variation 224403 224403 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193426.1 samtools variation 298407 298407 . . . alleles " C T"; frequencies " 0.694300518134715 0.305699481865285"; depth 772 ; unknown ; non-synonymous GL193426.1 samtools variation 309048 309048 . . . alleles " G A"; frequencies " 0.487179487179487 0.512820512820513"; depth 39 ; unknown ; N/A GL193426.1 samtools variation 320624 320624 . . . alleles " T C"; frequencies " 0.711538461538462 0.288461538461538"; depth 52 ; unknown ; N/A GL193426.1 samtools variation 355507 355507 . . . alleles " C T"; frequencies " 0.423728813559322 0.576271186440678"; depth 118 ; unknown ; N/A GL193426.1 samtools variation 356093 356093 . . . alleles " C T"; frequencies " 0.711538461538462 0.288461538461538"; depth 104 ; unknown ; N/A GL193426.1 samtools variation 358607 358607 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 60 ; unknown ; N/A GL193426.1 samtools variation 358897 358897 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193426.1 samtools variation 378415 378415 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL193426.1 samtools variation 381653 381653 . . . alleles " C T"; frequencies " 0.618055555555556 0.381944444444444"; depth 144 ; unknown ; N/A GL193426.1 samtools variation 439879 439879 . . . alleles " T G"; frequencies " 0.596153846153846 0.403846153846154"; depth 52 ; known ; N/A GL193426.1 samtools variation 439893 439893 . . . alleles " A T"; frequencies " 0.652173913043478 0.347826086956522"; depth 46 ; unknown ; N/A GL193426.1 samtools variation 564793 564793 . . . alleles " A T"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; synonymous GL193426.1 samtools variation 579905 579905 . . . alleles " C T"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL193426.1 samtools variation 590451 590451 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193426.1 samtools variation 612166 612166 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 48 ; unknown ; N/A GL193426.1 samtools variation 639718 639718 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193428.1 samtools variation 1233 1233 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL193428.1 samtools variation 3031 3031 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193428.1 samtools variation 11241 11241 . . . alleles " G T"; frequencies " 0.795744680851064 0.204255319148936"; depth 235 ; unknown ; N/A GL193428.1 samtools variation 19563 19563 . . . alleles " C T"; frequencies " 0.346153846153846 0.653846153846154"; depth 78 ; known ; N/A GL193428.1 samtools variation 41958 41958 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193428.1 samtools variation 42604 42604 . . . alleles " T C"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL193428.1 samtools variation 43820 43820 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 38 ; unknown ; N/A GL193428.1 samtools variation 51529 51529 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 52 ; unknown ; synonymous GL193428.1 samtools variation 70261 70261 . . . alleles " C G"; frequencies " 0.7734375 0.2265625"; depth 256 ; known ; N/A GL193428.1 samtools variation 370779 370779 . . . alleles " T C"; frequencies " 0.309278350515464 0.690721649484536"; depth 291 ; unknown ; N/A GL193428.1 samtools variation 394581 394581 . . . alleles " G A"; frequencies " 0.356687898089172 0.643312101910828"; depth 157 ; known ; synonymous GL193428.1 samtools variation 563529 563529 . . . alleles " T C"; frequencies " 0.386666666666667 0.613333333333333"; depth 75 ; known ; synonymous GL193428.1 samtools variation 566759 566759 . . . alleles " G A"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; known ; synonymous GL193428.1 samtools variation 574246 574246 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 87 ; known ; synonymous GL193428.1 samtools variation 599633 599633 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL193430.1 samtools variation 600703 600703 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL193430.1 samtools variation 600707 600707 . . . alleles " G A"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL193430.1 samtools variation 625356 625356 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL193430.1 samtools variation 629231 629231 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193430.1 samtools variation 629446 629446 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193430.1 samtools variation 662398 662398 . . . alleles " A C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL193431.1 samtools variation 17480 17480 . . . alleles " T C"; frequencies " 0.592592592592593 0.407407407407407"; depth 135 ; unknown ; N/A GL193431.1 samtools variation 55125 55125 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 30 ; unknown ; non-synonymous GL193431.1 samtools variation 59775 59775 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193431.1 samtools variation 59845 59845 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193431.1 samtools variation 77588 77588 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL193431.1 samtools variation 79933 79933 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 64 ; unknown ; N/A GL193431.1 samtools variation 93905 93905 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193431.1 samtools variation 153698 153698 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193431.1 samtools variation 159963 159963 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL193431.1 samtools variation 164421 164421 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; synonymous GL193431.1 samtools variation 205781 205781 . . . alleles " T G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193431.1 samtools variation 255238 255238 . . . alleles " T A"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL193431.1 samtools variation 257752 257752 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193431.1 samtools variation 259696 259696 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 39 ; unknown ; N/A GL193431.1 samtools variation 376179 376179 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193431.1 samtools variation 376327 376327 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193431.1 samtools variation 379479 379479 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL193431.1 samtools variation 379535 379535 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193431.1 samtools variation 396536 396536 . . . alleles " A G"; frequencies " 0.798387096774194 0.201612903225806"; depth 124 ; unknown ; non-synonymous GL193431.1 samtools variation 426888 426888 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193431.1 samtools variation 436393 436393 . . . alleles " C T"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; N/A GL193431.1 samtools variation 438694 438694 . . . alleles " G A"; frequencies " 0.613333333333333 0.386666666666667"; depth 75 ; unknown ; N/A GL193431.1 samtools variation 438776 438776 . . . alleles " G A"; frequencies " 0.767123287671233 0.232876712328767"; depth 73 ; unknown ; N/A GL193431.1 samtools variation 439331 439331 . . . alleles " C T"; frequencies " 0.783018867924528 0.216981132075472"; depth 106 ; unknown ; N/A GL193431.1 samtools variation 439556 439556 . . . alleles " C T"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193431.1 samtools variation 439956 439956 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL193431.1 samtools variation 572515 572515 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193431.1 samtools variation 573966 573966 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193431.1 samtools variation 574501 574501 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL193431.1 samtools variation 579887 579887 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL193431.1 samtools variation 620378 620378 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193431.1 samtools variation 624337 624337 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193431.1 samtools variation 624344 624344 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193431.1 samtools variation 624349 624349 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193433.1 samtools variation 154252 154252 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193433.1 samtools variation 194808 194808 . . . alleles " A C"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193433.1 samtools variation 212197 212197 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193433.1 samtools variation 259818 259818 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193433.1 samtools variation 279565 279565 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193433.1 samtools variation 303816 303816 . . . alleles " G A"; frequencies " 0.721485411140584 0.278514588859416"; depth 377 ; known ; synonymous GL193434.1 samtools variation 364406 364406 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL193434.1 samtools variation 365239 365239 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193434.1 samtools variation 583211 583211 . . . alleles " C T"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; known ; N/A GL193434.1 samtools variation 585082 585082 . . . alleles " C A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL193434.1 samtools variation 585198 585198 . . . alleles " G T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; N/A GL193434.1 samtools variation 585260 585260 . . . alleles " C T"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL193435.1 samtools variation 71461 71461 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL193435.1 samtools variation 93966 93966 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193435.1 samtools variation 94079 94079 . . . alleles " G A"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; unknown ; N/A GL193435.1 samtools variation 94594 94594 . . . alleles " C G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL193435.1 samtools variation 96435 96435 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193435.1 samtools variation 148095 148095 . . . alleles " A G"; frequencies " 0.402877697841727 0.597122302158273"; depth 139 ; known ; N/A GL193435.1 samtools variation 171128 171128 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193435.1 samtools variation 171400 171400 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL193435.1 samtools variation 172070 172070 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193435.1 samtools variation 178037 178037 . . . alleles " T G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL193435.1 samtools variation 233095 233095 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; synonymous GL193435.1 samtools variation 513223 513223 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 48 ; unknown ; synonymous GL193435.1 samtools variation 671974 671974 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193435.1 samtools variation 672395 672395 . . . alleles " T G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193435.1 samtools variation 686976 686976 . . . alleles " C T"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; N/A GL193435.1 samtools variation 686999 686999 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 50 ; unknown ; N/A GL193435.1 samtools variation 687609 687609 . . . alleles " C T"; frequencies " 0.570552147239264 0.429447852760736"; depth 1304 ; unknown ; N/A GL193435.1 samtools variation 687767 687767 . . . alleles " G A"; frequencies " 0.601555747623163 0.398444252376837"; depth 1157 ; unknown ; N/A GL193435.1 samtools variation 688111 688111 . . . alleles " T A"; frequencies " 0.775 0.225"; depth 80 ; unknown ; N/A GL193435.1 samtools variation 688693 688693 . . . alleles " C T"; frequencies " 0.514727184934814 0.485272815065186"; depth 2071 ; unknown ; non-synonymous GL193435.1 samtools variation 695462 695462 . . . alleles " G C"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL193437.1 samtools variation 292604 292604 . . . alleles " C T"; frequencies " 0.505376344086022 0.483870967741935"; depth 93 ; known ; synonymous GL193437.1 samtools variation 294234 294234 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193437.1 samtools variation 296396 296396 . . . alleles " T C"; frequencies " 0.674698795180723 0.325301204819277"; depth 83 ; unknown ; synonymous GL193438.1 samtools variation 245721 245721 . . . alleles " T C"; frequencies " 0.32 0.68"; depth 25 ; known ; N/A GL193438.1 samtools variation 329266 329266 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193438.1 samtools variation 331250 331250 . . . alleles " T C"; frequencies " 0.576923076923077 0.423076923076923"; depth 130 ; unknown ; N/A GL193438.1 samtools variation 331535 331535 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193438.1 samtools variation 331882 331882 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL193438.1 samtools variation 332115 332115 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193438.1 samtools variation 332299 332299 . . . alleles " A G"; frequencies " 0.694117647058824 0.305882352941176"; depth 170 ; unknown ; synonymous GL193438.1 samtools variation 332477 332477 . . . alleles " T C"; frequencies " 0.728971962616822 0.271028037383178"; depth 107 ; unknown ; synonymous GL193438.1 samtools variation 332569 332569 . . . alleles " A G"; frequencies " 0.692771084337349 0.307228915662651"; depth 166 ; unknown ; synonymous GL193438.1 samtools variation 333226 333226 . . . alleles " A G"; frequencies " 0.68141592920354 0.31858407079646"; depth 113 ; unknown ; synonymous GL193438.1 samtools variation 337063 337063 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193438.1 samtools variation 355170 355170 . . . alleles " C T"; frequencies " 0.776315789473684 0.223684210526316"; depth 76 ; known ; synonymous GL193438.1 samtools variation 372644 372644 . . . alleles " G C"; frequencies " 0.6875 0.3125"; depth 112 ; unknown ; N/A GL193438.1 samtools variation 372667 372667 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 100 ; unknown ; N/A GL193438.1 samtools variation 372765 372765 . . . alleles " A G"; frequencies " 0.730769230769231 0.269230769230769"; depth 104 ; unknown ; N/A GL193438.1 samtools variation 395510 395510 . . . alleles " T C"; frequencies " 0.774774774774775 0.225225225225225"; depth 111 ; unknown ; synonymous GL193438.1 samtools variation 411279 411279 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 63 ; unknown ; N/A GL193438.1 samtools variation 411282 411282 . . . alleles " T G"; frequencies " 0.671641791044776 0.328358208955224"; depth 67 ; unknown ; N/A GL193438.1 samtools variation 413900 413900 . . . alleles " A G"; frequencies " 0.782918149466192 0.217081850533808"; depth 281 ; unknown ; N/A GL193438.1 samtools variation 414933 414933 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 200 ; unknown ; N/A GL193438.1 samtools variation 415304 415304 . . . alleles " G A"; frequencies " 0.774193548387097 0.225806451612903"; depth 248 ; unknown ; synonymous GL193438.1 samtools variation 416524 416524 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193438.1 samtools variation 417204 417204 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL193438.1 samtools variation 419135 419135 . . . alleles " A G"; frequencies " 0.494845360824742 0.505154639175258"; depth 97 ; known ; N/A GL193438.1 samtools variation 429895 429895 . . . alleles " A G"; frequencies " 0.773869346733668 0.226130653266332"; depth 199 ; unknown ; N/A GL193438.1 samtools variation 431634 431634 . . . alleles " T G"; frequencies " 0.696428571428571 0.303571428571429"; depth 56 ; unknown ; N/A GL193438.1 samtools variation 432597 432597 . . . alleles " C A"; frequencies " 0.720930232558139 0.27906976744186"; depth 43 ; unknown ; N/A GL193438.1 samtools variation 432847 432847 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL193438.1 samtools variation 436660 436660 . . . alleles " G C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193438.1 samtools variation 439292 439292 . . . alleles " C T"; frequencies " 0.686274509803922 0.313725490196078"; depth 51 ; known ; N/A GL193438.1 samtools variation 451383 451383 . . . alleles " A G"; frequencies " 0.698224852071006 0.301775147928994"; depth 169 ; unknown ; synonymous GL193438.1 samtools variation 462030 462030 . . . alleles " C G"; frequencies " 0.643564356435644 0.356435643564356"; depth 202 ; unknown ; N/A GL193438.1 samtools variation 462632 462632 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 98 ; unknown ; N/A GL193438.1 samtools variation 463250 463250 . . . alleles " A C"; frequencies " 0.626506024096386 0.371084337349398"; depth 415 ; unknown ; N/A GL193438.1 samtools variation 463796 463796 . . . alleles " A C"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL193438.1 samtools variation 464249 464249 . . . alleles " T A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193438.1 samtools variation 493702 493702 . . . alleles " A G"; frequencies " 0.457627118644068 0.542372881355932"; depth 59 ; unknown ; non-synonymous GL193438.1 samtools variation 494055 494055 . . . alleles " T C"; frequencies " 0.547619047619048 0.452380952380952"; depth 84 ; unknown ; N/A GL193438.1 samtools variation 494342 494342 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 42 ; unknown ; N/A GL193438.1 samtools variation 589316 589316 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193438.1 samtools variation 606067 606067 . . . alleles " C G"; frequencies " 0.73015873015873 0.26984126984127"; depth 63 ; unknown ; synonymous GL193438.1 samtools variation 606104 606104 . . . alleles " C T"; frequencies " 0.212121212121212 0.787878787878788"; depth 66 ; unknown ; non-synonymous GL193438.1 samtools variation 606190 606190 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 88 ; known ; synonymous GL193441.1 samtools variation 276452 276452 . . . alleles " C T"; frequencies " 0.33587786259542 0.66412213740458"; depth 131 ; known ; non-synonymous GL193441.1 samtools variation 280706 280706 . . . alleles " A G"; frequencies " 0.619195046439629 0.380804953560372"; depth 323 ; known ; N/A GL193441.1 samtools variation 309104 309104 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193441.1 samtools variation 315326 315326 . . . alleles " C G"; frequencies " 0.409429280397022 0.590570719602978"; depth 403 ; known ; N/A GL193441.1 samtools variation 316330 316330 . . . alleles " C A"; frequencies " 0.232558139534884 0.767441860465116"; depth 301 ; known ; N/A GL193441.1 samtools variation 336151 336151 . . . alleles " T A"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL193441.1 samtools variation 336153 336153 . . . alleles " C A"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL193441.1 samtools variation 336378 336378 . . . alleles " T C"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; known ; N/A GL193441.1 samtools variation 345036 345036 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193441.1 samtools variation 346676 346676 . . . alleles " T A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193441.1 samtools variation 352147 352147 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193441.1 samtools variation 353573 353573 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193441.1 samtools variation 355214 355214 . . . alleles " T G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193441.1 samtools variation 364029 364029 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 48 ; known ; N/A GL193441.1 samtools variation 364685 364685 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193441.1 samtools variation 365651 365651 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL193441.1 samtools variation 372240 372240 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193441.1 samtools variation 379556 379556 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL193441.1 samtools variation 381151 381151 . . . alleles " C T"; frequencies " 0.212765957446809 0.787234042553192"; depth 47 ; known ; N/A GL193441.1 samtools variation 386611 386611 . . . alleles " G C"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL193441.1 samtools variation 388452 388452 . . . alleles " A T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL193441.1 samtools variation 390425 390425 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; N/A GL193441.1 samtools variation 391811 391811 . . . alleles " A C"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL193441.1 samtools variation 391922 391922 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193441.1 samtools variation 391967 391967 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193441.1 samtools variation 393664 393664 . . . alleles " T C"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL193441.1 samtools variation 395925 395925 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193441.1 samtools variation 397470 397470 . . . alleles " T G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193441.1 samtools variation 399971 399971 . . . alleles " T G"; frequencies " 0.212121212121212 0.787878787878788"; depth 33 ; known ; N/A GL193441.1 samtools variation 404029 404029 . . . alleles " G T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL193441.1 samtools variation 405729 405729 . . . alleles " T C"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; known ; N/A GL193441.1 samtools variation 407022 407022 . . . alleles " C T"; frequencies " 0.734265734265734 0.265734265734266"; depth 143 ; known ; N/A GL193441.1 samtools variation 408446 408446 . . . alleles " A C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193441.1 samtools variation 409055 409055 . . . alleles " A G"; frequencies " 0.527272727272727 0.472727272727273"; depth 55 ; known ; N/A GL193441.1 samtools variation 412165 412165 . . . alleles " G C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193441.1 samtools variation 423514 423514 . . . alleles " A T"; frequencies " 0.380952380952381 0.619047619047619"; depth 42 ; known ; N/A GL193441.1 samtools variation 425894 425894 . . . alleles " A G"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; known ; N/A GL193441.1 samtools variation 426162 426162 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193441.1 samtools variation 436035 436035 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193441.1 samtools variation 436367 436367 . . . alleles " A G"; frequencies " 0.302631578947368 0.697368421052632"; depth 76 ; known ; N/A GL193441.1 samtools variation 522022 522022 . . . alleles " A C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193442.1 samtools variation 41253 41253 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193442.1 samtools variation 97754 97754 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193442.1 samtools variation 102726 102726 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 68 ; known ; N/A GL193442.1 samtools variation 102763 102763 . . . alleles " A G"; frequencies " 0.771428571428571 0.228571428571429"; depth 70 ; known ; N/A GL193442.1 samtools variation 103557 103557 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193442.1 samtools variation 103663 103663 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193442.1 samtools variation 120584 120584 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193442.1 samtools variation 122823 122823 . . . alleles " C A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193442.1 samtools variation 127035 127035 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193442.1 samtools variation 147282 147282 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193442.1 samtools variation 147341 147341 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193442.1 samtools variation 147363 147363 . . . alleles " T A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193442.1 samtools variation 147372 147372 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193442.1 samtools variation 154550 154550 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL193442.1 samtools variation 155407 155407 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193442.1 samtools variation 165000 165000 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL193442.1 samtools variation 179668 179668 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193442.1 samtools variation 185203 185203 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193442.1 samtools variation 195009 195009 . . . alleles " G A"; frequencies " 0.698412698412698 0.301587301587302"; depth 63 ; unknown ; N/A GL193442.1 samtools variation 195467 195467 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; unknown ; N/A GL193442.1 samtools variation 196085 196085 . . . alleles " A G"; frequencies " 0.391304347826087 0.608695652173913"; depth 92 ; unknown ; N/A GL193442.1 samtools variation 196663 196663 . . . alleles " T C"; frequencies " 0.381443298969072 0.618556701030928"; depth 97 ; known ; N/A GL193442.1 samtools variation 196856 196856 . . . alleles " C T"; frequencies " 0.761006289308176 0.238993710691824"; depth 159 ; unknown ; N/A GL193442.1 samtools variation 220963 220963 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193442.1 samtools variation 223575 223575 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193442.1 samtools variation 229994 229994 . . . alleles " C T"; frequencies " 0.759259259259259 0.240740740740741"; depth 54 ; known ; N/A GL193442.1 samtools variation 232480 232480 . . . alleles " T C"; frequencies " 0.755813953488372 0.244186046511628"; depth 86 ; unknown ; N/A GL193442.1 samtools variation 332150 332150 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193442.1 samtools variation 334268 334268 . . . alleles " G C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193442.1 samtools variation 334283 334283 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193442.1 samtools variation 337201 337201 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193442.1 samtools variation 339074 339074 . . . alleles " A G"; frequencies " 0.53125 0.46875"; depth 32 ; known ; synonymous GL193442.1 samtools variation 410360 410360 . . . alleles " A C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193442.1 samtools variation 411043 411043 . . . alleles " A G"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL193442.1 samtools variation 422733 422733 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193443.1 samtools variation 5394 5394 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193443.1 samtools variation 18060 18060 . . . alleles " T A"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; known ; N/A GL193443.1 samtools variation 18538 18538 . . . alleles " C A"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; unknown ; N/A GL193443.1 samtools variation 19008 19008 . . . alleles " C G"; frequencies " 0.472222222222222 0.527777777777778"; depth 36 ; unknown ; N/A GL193443.1 samtools variation 19547 19547 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193443.1 samtools variation 19655 19655 . . . alleles " T C"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL193443.1 samtools variation 20117 20117 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193443.1 samtools variation 33521 33521 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193444.1 samtools variation 262597 262597 . . . alleles " G A"; frequencies " 0.765957446808511 0.234042553191489"; depth 47 ; known ; non-synonymous GL193444.1 samtools variation 271376 271376 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193444.1 samtools variation 271466 271466 . . . alleles " G C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193444.1 samtools variation 272525 272525 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193444.1 samtools variation 272779 272779 . . . alleles " C T"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; known ; N/A GL193445.1 samtools variation 3724 3724 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; synonymous GL193445.1 samtools variation 4342 4342 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 46 ; known ; N/A GL193445.1 samtools variation 14168 14168 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL193445.1 samtools variation 18333 18333 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193445.1 samtools variation 27296 27296 . . . alleles " C T"; frequencies " 0.31547619047619 0.68452380952381"; depth 168 ; unknown ; non-synonymous GL193445.1 samtools variation 96164 96164 . . . alleles " G A"; frequencies " 0.795918367346939 0.204081632653061"; depth 49 ; known ; synonymous GL193445.1 samtools variation 96653 96653 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL193445.1 samtools variation 171047 171047 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL193445.1 samtools variation 173254 173254 . . . alleles " G A"; frequencies " 0.212121212121212 0.787878787878788"; depth 33 ; unknown ; N/A GL193445.1 samtools variation 178330 178330 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193445.1 samtools variation 206153 206153 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193445.1 samtools variation 239254 239254 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193445.1 samtools variation 246460 246460 . . . alleles " T C"; frequencies " 0.456953642384106 0.543046357615894"; depth 151 ; unknown ; N/A GL193445.1 samtools variation 258557 258557 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; synonymous GL193445.1 samtools variation 272767 272767 . . . alleles " A C"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; synonymous GL193445.1 samtools variation 278528 278528 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; synonymous GL193445.1 samtools variation 278529 278529 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; non-synonymous GL193445.1 samtools variation 282771 282771 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193445.1 samtools variation 421824 421824 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; synonymous GL193445.1 samtools variation 439900 439900 . . . alleles " G A"; frequencies " 0.743243243243243 0.256756756756757"; depth 74 ; unknown ; N/A GL193445.1 samtools variation 531064 531064 . . . alleles " C T"; frequencies " 0.669565217391304 0.330434782608696"; depth 115 ; unknown ; N/A GL193445.1 samtools variation 533889 533889 . . . alleles " C T"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; N/A GL193445.1 samtools variation 535115 535115 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 32 ; known ; N/A GL193445.1 samtools variation 666694 666694 . . . alleles " A G"; frequencies " 0.464627151051625 0.535372848948375"; depth 1046 ; known ; synonymous GL193446.1 samtools variation 18718 18718 . . . alleles " C T"; frequencies " 0.759259259259259 0.240740740740741"; depth 54 ; unknown ; N/A GL193446.1 samtools variation 50343 50343 . . . alleles " G C"; frequencies " 0.728070175438597 0.271929824561404"; depth 114 ; unknown ; synonymous GL193446.1 samtools variation 204435 204435 . . . alleles " C T"; frequencies " 0.56 0.44"; depth 50 ; known ; N/A GL193447.1 samtools variation 46193 46193 . . . alleles " C T"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL193447.1 samtools variation 154896 154896 . . . alleles " C T"; frequencies " 0.754342431761787 0.24317617866005"; depth 403 ; unknown ; N/A GL193447.1 samtools variation 155971 155971 . . . alleles " C T"; frequencies " 0.783216783216783 0.216783216783217"; depth 429 ; unknown ; N/A GL193447.1 samtools variation 160133 160133 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 66 ; unknown ; N/A GL193447.1 samtools variation 164634 164634 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 60 ; known ; N/A GL193447.1 samtools variation 166695 166695 . . . alleles " C T"; frequencies " 0.557377049180328 0.442622950819672"; depth 61 ; known ; N/A GL193447.1 samtools variation 172379 172379 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193447.1 samtools variation 176161 176161 . . . alleles " C G"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL193447.1 samtools variation 176474 176474 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL193447.1 samtools variation 245165 245165 . . . alleles " G C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193447.1 samtools variation 255962 255962 . . . alleles " T C"; frequencies " 0.612179487179487 0.387820512820513"; depth 312 ; known ; synonymous GL193447.1 samtools variation 258740 258740 . . . alleles " G T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193447.1 samtools variation 261768 261768 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL193447.1 samtools variation 262724 262724 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 30 ; unknown ; N/A GL193447.1 samtools variation 262908 262908 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 88 ; unknown ; N/A GL193447.1 samtools variation 263499 263499 . . . alleles " C T"; frequencies " 0.752212389380531 0.247787610619469"; depth 113 ; unknown ; N/A GL193447.1 samtools variation 271231 271231 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193447.1 samtools variation 274516 274516 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193447.1 samtools variation 285906 285906 . . . alleles " A T"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193447.1 samtools variation 289139 289139 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193447.1 samtools variation 292321 292321 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193447.1 samtools variation 294654 294654 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL193447.1 samtools variation 294655 294655 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193447.1 samtools variation 296818 296818 . . . alleles " A T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193447.1 samtools variation 297832 297832 . . . alleles " C T"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL193447.1 samtools variation 298530 298530 . . . alleles " G A"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL193447.1 samtools variation 299650 299650 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193447.1 samtools variation 303406 303406 . . . alleles " G C"; frequencies " 0.777648428405122 0.222351571594878"; depth 859 ; unknown ; synonymous GL193447.1 samtools variation 305882 305882 . . . alleles " C G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193447.1 samtools variation 317303 317303 . . . alleles " C T"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL193447.1 samtools variation 318646 318646 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193447.1 samtools variation 320394 320394 . . . alleles " A T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193447.1 samtools variation 323291 323291 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193447.1 samtools variation 323783 323783 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193447.1 samtools variation 331774 331774 . . . alleles " T C"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL193447.1 samtools variation 332284 332284 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; known ; N/A GL193447.1 samtools variation 332859 332859 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193447.1 samtools variation 338113 338113 . . . alleles " T C"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; known ; N/A GL193447.1 samtools variation 339660 339660 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL193447.1 samtools variation 340240 340240 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193447.1 samtools variation 341943 341943 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193447.1 samtools variation 344209 344209 . . . alleles " T A"; frequencies " 0.340425531914894 0.659574468085106"; depth 47 ; known ; N/A GL193447.1 samtools variation 347225 347225 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL193447.1 samtools variation 349803 349803 . . . alleles " A C"; frequencies " 0.336206896551724 0.663793103448276"; depth 116 ; unknown ; N/A GL193447.1 samtools variation 350547 350547 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL193447.1 samtools variation 351712 351712 . . . alleles " G A"; frequencies " 0.30188679245283 0.69811320754717"; depth 53 ; unknown ; N/A GL193447.1 samtools variation 351788 351788 . . . alleles " T C"; frequencies " 0.302325581395349 0.697674418604651"; depth 43 ; unknown ; N/A GL193447.1 samtools variation 352520 352520 . . . alleles " C A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193447.1 samtools variation 353716 353716 . . . alleles " G C"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL193447.1 samtools variation 368785 368785 . . . alleles " T C"; frequencies " 0.317073170731707 0.682926829268293"; depth 41 ; known ; N/A GL193447.1 samtools variation 371641 371641 . . . alleles " C A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL193447.1 samtools variation 372146 372146 . . . alleles " A G"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; known ; N/A GL193447.1 samtools variation 372201 372201 . . . alleles " G T"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; known ; N/A GL193447.1 samtools variation 372465 372465 . . . alleles " G A"; frequencies " 0.677777777777778 0.322222222222222"; depth 90 ; known ; N/A GL193447.1 samtools variation 372496 372496 . . . alleles " G A"; frequencies " 0.70873786407767 0.29126213592233"; depth 103 ; known ; N/A GL193447.1 samtools variation 372536 372536 . . . alleles " A G"; frequencies " 0.303030303030303 0.696969696969697"; depth 99 ; known ; N/A GL193447.1 samtools variation 375624 375624 . . . alleles " G A"; frequencies " 0.331550802139037 0.668449197860963"; depth 187 ; unknown ; N/A GL193447.1 samtools variation 383608 383608 . . . alleles " A G"; frequencies " 0.420289855072464 0.579710144927536"; depth 69 ; unknown ; N/A GL193447.1 samtools variation 391539 391539 . . . alleles " T A"; frequencies " 0.78125 0.21875"; depth 64 ; known ; N/A GL193447.1 samtools variation 444752 444752 . . . alleles " T C"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL193447.1 samtools variation 446834 446834 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL193447.1 samtools variation 447688 447688 . . . alleles " G C"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; known ; N/A GL193447.1 samtools variation 454766 454766 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193447.1 samtools variation 455217 455217 . . . alleles " G T"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; N/A GL193447.1 samtools variation 455680 455680 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL193447.1 samtools variation 455934 455934 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL193447.1 samtools variation 456053 456053 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL193447.1 samtools variation 456081 456081 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193447.1 samtools variation 456173 456173 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193447.1 samtools variation 458044 458044 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL193447.1 samtools variation 461102 461102 . . . alleles " A T"; frequencies " 0.458333333333333 0.541666666666667"; depth 48 ; known ; N/A GL193447.1 samtools variation 461115 461115 . . . alleles " C A"; frequencies " 0.469387755102041 0.530612244897959"; depth 49 ; known ; N/A GL193447.1 samtools variation 461177 461177 . . . alleles " G T"; frequencies " 0.4375 0.5625"; depth 48 ; known ; N/A GL193447.1 samtools variation 462293 462293 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193447.1 samtools variation 462549 462549 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 30 ; known ; N/A GL193447.1 samtools variation 462633 462633 . . . alleles " C T"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; N/A GL193447.1 samtools variation 462669 462669 . . . alleles " A C"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; N/A GL193447.1 samtools variation 462713 462713 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; N/A GL193447.1 samtools variation 575909 575909 . . . alleles " T C"; frequencies " 0.551282051282051 0.448717948717949"; depth 78 ; known ; N/A GL193447.1 samtools variation 603580 603580 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; non-synonymous GL193447.1 samtools variation 603792 603792 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; non-synonymous GL193447.1 samtools variation 641800 641800 . . . alleles " C A"; frequencies " 0.415094339622642 0.584905660377358"; depth 53 ; unknown ; N/A GL193447.1 samtools variation 642292 642292 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193447.1 samtools variation 642627 642627 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193447.1 samtools variation 670607 670607 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193448.1 samtools variation 518086 518086 . . . alleles " T C"; frequencies " 0.448979591836735 0.551020408163265"; depth 49 ; unknown ; synonymous GL193448.1 samtools variation 518167 518167 . . . alleles " C T"; frequencies " 0.508196721311475 0.491803278688525"; depth 61 ; unknown ; synonymous GL193448.1 samtools variation 544463 544463 . . . alleles " C G"; frequencies " 0.474358974358974 0.525641025641026"; depth 78 ; unknown ; synonymous GL193448.1 samtools variation 570412 570412 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193448.1 samtools variation 610472 610472 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193448.1 samtools variation 611789 611789 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193448.1 samtools variation 611917 611917 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193448.1 samtools variation 618835 618835 . . . alleles " C G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193448.1 samtools variation 631103 631103 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193448.1 samtools variation 640170 640170 . . . alleles " T G"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL193449.1 samtools variation 381028 381028 . . . alleles " T C"; frequencies " 0.432432432432432 0.567567567567568"; depth 37 ; unknown ; N/A GL193449.1 samtools variation 425149 425149 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 48 ; unknown ; N/A GL193450.1 samtools variation 225308 225308 . . . alleles " G A"; frequencies " 0.337004405286344 0.662995594713656"; depth 454 ; unknown ; synonymous GL193450.1 samtools variation 276806 276806 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193450.1 samtools variation 380618 380618 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193450.1 samtools variation 381950 381950 . . . alleles " C T"; frequencies " 0.696969696969697 0.303030303030303"; depth 66 ; unknown ; non-synonymous GL193452.1 samtools variation 39568 39568 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193452.1 samtools variation 39750 39750 . . . alleles " C G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL193452.1 samtools variation 43968 43968 . . . alleles " G C"; frequencies " 0.578947368421053 0.368421052631579"; depth 19 ; known ; N/A GL193452.1 samtools variation 63296 63296 . . . alleles " C T"; frequencies " 0.763888888888889 0.236111111111111"; depth 432 ; unknown ; synonymous GL193452.1 samtools variation 77722 77722 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193452.1 samtools variation 82085 82085 . . . alleles " C T"; frequencies " 0.673684210526316 0.326315789473684"; depth 285 ; unknown ; non-synonymous GL193452.1 samtools variation 82925 82925 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL193452.1 samtools variation 93270 93270 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 24 ; known ; N/A GL193452.1 samtools variation 104587 104587 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193452.1 samtools variation 665582 665582 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL193453.1 samtools variation 42026 42026 . . . alleles " A G"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL193453.1 samtools variation 53940 53940 . . . alleles " T C"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; N/A GL193453.1 samtools variation 60409 60409 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193453.1 samtools variation 65731 65731 . . . alleles " T C"; frequencies " 0.228070175438596 0.771929824561403"; depth 57 ; known ; N/A GL193453.1 samtools variation 67136 67136 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL193453.1 samtools variation 67196 67196 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193453.1 samtools variation 67402 67402 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193453.1 samtools variation 67704 67704 . . . alleles " G A"; frequencies " 0.577464788732394 0.422535211267606"; depth 71 ; unknown ; N/A GL193453.1 samtools variation 71407 71407 . . . alleles " C G"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL193453.1 samtools variation 73026 73026 . . . alleles " G A"; frequencies " 0.73134328358209 0.26865671641791"; depth 67 ; unknown ; non-synonymous GL193453.1 samtools variation 84898 84898 . . . alleles " T C"; frequencies " 0.264367816091954 0.735632183908046"; depth 174 ; known ; N/A GL193453.1 samtools variation 86246 86246 . . . alleles " G A"; frequencies " 0.252 0.748"; depth 250 ; known ; N/A GL193453.1 samtools variation 90807 90807 . . . alleles " C G"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL193453.1 samtools variation 90949 90949 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193453.1 samtools variation 92431 92431 . . . alleles " A C"; frequencies " 0.371794871794872 0.628205128205128"; depth 78 ; known ; N/A GL193453.1 samtools variation 96148 96148 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193453.1 samtools variation 96832 96832 . . . alleles " C T"; frequencies " 0.649122807017544 0.350877192982456"; depth 57 ; unknown ; N/A GL193453.1 samtools variation 104821 104821 . . . alleles " C A"; frequencies " 0.25 0.75"; depth 56 ; known ; N/A GL193453.1 samtools variation 109395 109395 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL193453.1 samtools variation 109823 109823 . . . alleles " G T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193453.1 samtools variation 118000 118000 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193453.1 samtools variation 118150 118150 . . . alleles " C G"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; known ; N/A GL193453.1 samtools variation 120253 120253 . . . alleles " T C"; frequencies " 0.525 0.475"; depth 40 ; known ; N/A GL193453.1 samtools variation 123544 123544 . . . alleles " A G"; frequencies " 0.293614595210946 0.706385404789054"; depth 1754 ; known ; synonymous GL193453.1 samtools variation 124555 124555 . . . alleles " G T"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL193453.1 samtools variation 130199 130199 . . . alleles " C T"; frequencies " 0.745519713261649 0.254480286738351"; depth 279 ; unknown ; N/A GL193453.1 samtools variation 130643 130643 . . . alleles " T C"; frequencies " 0.459627329192547 0.540372670807453"; depth 161 ; known ; N/A GL193453.1 samtools variation 370494 370494 . . . alleles " G A"; frequencies " 0.693548387096774 0.306451612903226"; depth 62 ; known ; N/A GL193453.1 samtools variation 370579 370579 . . . alleles " T C"; frequencies " 0.594594594594595 0.405405405405405"; depth 111 ; known ; N/A GL193453.1 samtools variation 370742 370742 . . . alleles " C T"; frequencies " 0.74468085106383 0.25531914893617"; depth 47 ; unknown ; N/A GL193453.1 samtools variation 370788 370788 . . . alleles " A G"; frequencies " 0.775193798449612 0.224806201550388"; depth 129 ; known ; N/A GL193453.1 samtools variation 370917 370917 . . . alleles " T C"; frequencies " 0.76271186440678 0.23728813559322"; depth 118 ; known ; N/A GL193453.1 samtools variation 370970 370970 . . . alleles " G A"; frequencies " 0.36231884057971 0.63768115942029"; depth 69 ; known ; N/A GL193453.1 samtools variation 371019 371019 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; known ; N/A GL193453.1 samtools variation 371049 371049 . . . alleles " T C"; frequencies " 0.345454545454545 0.654545454545455"; depth 55 ; known ; N/A GL193453.1 samtools variation 371199 371199 . . . alleles " T C"; frequencies " 0.340425531914894 0.659574468085106"; depth 47 ; known ; N/A GL193453.1 samtools variation 371327 371327 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 52 ; unknown ; N/A GL193453.1 samtools variation 371508 371508 . . . alleles " T C"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; known ; N/A GL193453.1 samtools variation 371569 371569 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; unknown ; N/A GL193453.1 samtools variation 374831 374831 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193453.1 samtools variation 375052 375052 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 84 ; known ; synonymous GL193453.1 samtools variation 375148 375148 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 52 ; known ; N/A GL193453.1 samtools variation 375208 375208 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 52 ; known ; N/A GL193453.1 samtools variation 375218 375218 . . . alleles " T C"; frequencies " 0.551020408163265 0.448979591836735"; depth 49 ; known ; N/A GL193453.1 samtools variation 385430 385430 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193453.1 samtools variation 396570 396570 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; synonymous GL193453.1 samtools variation 495265 495265 . . . alleles " C T"; frequencies " 0.448275862068966 0.551724137931034"; depth 87 ; known ; synonymous GL193453.1 samtools variation 561597 561597 . . . alleles " C T"; frequencies " 0.219512195121951 0.780487804878049"; depth 41 ; known ; synonymous GL193453.1 samtools variation 619990 619990 . . . alleles " C G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; synonymous GL193453.1 samtools variation 620840 620840 . . . alleles " A G"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; known ; non-synonymous GL193453.1 samtools variation 620888 620888 . . . alleles " T C"; frequencies " 0.232142857142857 0.767857142857143"; depth 56 ; known ; non-synonymous GL193453.1 samtools variation 620995 620995 . . . alleles " G A"; frequencies " 0.21875 0.78125"; depth 32 ; known ; non-synonymous GL193453.1 samtools variation 623937 623937 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; known ; N/A GL193453.1 samtools variation 623958 623958 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; known ; N/A GL193453.1 samtools variation 632324 632324 . . . alleles " A G"; frequencies " 0.236842105263158 0.763157894736842"; depth 38 ; unknown ; synonymous GL193453.1 samtools variation 638036 638036 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193453.1 samtools variation 640059 640059 . . . alleles " A G"; frequencies " 0.211382113821138 0.788617886178862"; depth 123 ; unknown ; synonymous GL193454.1 samtools variation 3091 3091 . . . alleles " C G"; frequencies " 0.28 0.72"; depth 25 ; unknown ; synonymous GL193454.1 samtools variation 246471 246471 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193454.1 samtools variation 289135 289135 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL193454.1 samtools variation 289461 289461 . . . alleles " A G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL193455.1 samtools variation 55489 55489 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 40 ; known ; synonymous GL193455.1 samtools variation 87625 87625 . . . alleles " C G"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL193455.1 samtools variation 116110 116110 . . . alleles " G A"; frequencies " 0.73972602739726 0.26027397260274"; depth 73 ; known ; N/A GL193455.1 samtools variation 125043 125043 . . . alleles " G A"; frequencies " 0.542372881355932 0.457627118644068"; depth 59 ; known ; synonymous GL193455.1 samtools variation 135973 135973 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193455.1 samtools variation 140858 140858 . . . alleles " C T"; frequencies " 0.796116504854369 0.203883495145631"; depth 103 ; known ; synonymous GL193455.1 samtools variation 144800 144800 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL193455.1 samtools variation 156413 156413 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 34 ; known ; N/A GL193455.1 samtools variation 199822 199822 . . . alleles " C T"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; known ; N/A GL193455.1 samtools variation 396202 396202 . . . alleles " C T"; frequencies " 0.690140845070423 0.309859154929577"; depth 71 ; unknown ; N/A GL193455.1 samtools variation 396298 396298 . . . alleles " C G"; frequencies " 0.52 0.48"; depth 75 ; known ; N/A GL193455.1 samtools variation 399226 399226 . . . alleles " A C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193455.1 samtools variation 411666 411666 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193455.1 samtools variation 416683 416683 . . . alleles " G T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193455.1 samtools variation 466482 466482 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL193455.1 samtools variation 596410 596410 . . . alleles " C T"; frequencies " 0.261904761904762 0.738095238095238"; depth 42 ; unknown ; synonymous GL193455.1 samtools variation 597405 597405 . . . alleles " C T"; frequencies " 0.358635863586359 0.641364136413641"; depth 909 ; unknown ; synonymous GL193455.1 samtools variation 604432 604432 . . . alleles " T G"; frequencies " 0.459459459459459 0.540540540540541"; depth 74 ; known ; N/A GL193455.1 samtools variation 604570 604570 . . . alleles " T C"; frequencies " 0.355263157894737 0.644736842105263"; depth 76 ; unknown ; N/A GL193456.1 samtools variation 288620 288620 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193456.1 samtools variation 583520 583520 . . . alleles " G A"; frequencies " 0.780487804878049 0.219512195121951"; depth 82 ; unknown ; N/A GL193457.1 samtools variation 269751 269751 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 145 ; unknown ; synonymous GL193457.1 samtools variation 278496 278496 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL193457.1 samtools variation 281761 281761 . . . alleles " T C"; frequencies " 0.509523809523809 0.49047619047619"; depth 210 ; unknown ; N/A GL193457.1 samtools variation 284264 284264 . . . alleles " G T"; frequencies " 0.592592592592593 0.407407407407407"; depth 54 ; unknown ; N/A GL193457.1 samtools variation 285757 285757 . . . alleles " A G"; frequencies " 0.660098522167488 0.339901477832512"; depth 203 ; unknown ; N/A GL193457.1 samtools variation 287141 287141 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; N/A GL193457.1 samtools variation 287149 287149 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 46 ; unknown ; N/A GL193457.1 samtools variation 287220 287220 . . . alleles " T C"; frequencies " 0.483870967741935 0.516129032258065"; depth 62 ; unknown ; N/A GL193457.1 samtools variation 287732 287732 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193457.1 samtools variation 287852 287852 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL193457.1 samtools variation 288718 288718 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193457.1 samtools variation 297605 297605 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193457.1 samtools variation 299104 299104 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193457.1 samtools variation 301164 301164 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193457.1 samtools variation 313202 313202 . . . alleles " G A"; frequencies " 0.290322580645161 0.709677419354839"; depth 31 ; unknown ; N/A GL193457.1 samtools variation 315145 315145 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193457.1 samtools variation 315175 315175 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193457.1 samtools variation 405561 405561 . . . alleles " T G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193457.1 samtools variation 438984 438984 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193457.1 samtools variation 456231 456231 . . . alleles " G T"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; non-synonymous GL193457.1 samtools variation 506210 506210 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193457.1 samtools variation 552950 552950 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193457.1 samtools variation 554775 554775 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193457.1 samtools variation 555573 555573 . . . alleles " C A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193457.1 samtools variation 559776 559776 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193457.1 samtools variation 561141 561141 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193457.1 samtools variation 562673 562673 . . . alleles " C T"; frequencies " 0.48 0.52"; depth 25 ; known ; N/A GL193457.1 samtools variation 562841 562841 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL193457.1 samtools variation 563467 563467 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL193457.1 samtools variation 576697 576697 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193457.1 samtools variation 578092 578092 . . . alleles " G A"; frequencies " 0.723270440251572 0.276729559748428"; depth 159 ; unknown ; synonymous GL193457.1 samtools variation 578170 578170 . . . alleles " G T"; frequencies " 0.608695652173913 0.391304347826087"; depth 46 ; unknown ; synonymous GL193457.1 samtools variation 580555 580555 . . . alleles " C T"; frequencies " 0.683284457478006 0.316715542521994"; depth 682 ; unknown ; N/A GL193457.1 samtools variation 580892 580892 . . . alleles " T C"; frequencies " 0.786516853932584 0.213483146067416"; depth 89 ; unknown ; N/A GL193457.1 samtools variation 581182 581182 . . . alleles " T C"; frequencies " 0.651162790697674 0.348837209302326"; depth 129 ; unknown ; N/A GL193459.1 samtools variation 525742 525742 . . . alleles " T G"; frequencies " 0.26 0.74"; depth 50 ; unknown ; non-synonymous GL193459.1 samtools variation 527571 527571 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL193459.1 samtools variation 529188 529188 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 69 ; unknown ; non-synonymous GL193459.1 samtools variation 529977 529977 . . . alleles " G T"; frequencies " 0.714285714285714 0.285714285714286"; depth 49 ; unknown ; N/A GL193459.1 samtools variation 547824 547824 . . . alleles " G A"; frequencies " 0.332222222222222 0.667777777777778"; depth 3600 ; unknown ; synonymous GL193459.1 samtools variation 548759 548759 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193459.1 samtools variation 549464 549464 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL193459.1 samtools variation 549724 549724 . . . alleles " T G"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL193459.1 samtools variation 569017 569017 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL193459.1 samtools variation 593191 593191 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; synonymous GL193459.1 samtools variation 594485 594485 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL193459.1 samtools variation 601774 601774 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193459.1 samtools variation 617788 617788 . . . alleles " C A"; frequencies " 0.72 0.28"; depth 25 ; unknown ; non-synonymous GL193459.1 samtools variation 617807 617807 . . . alleles " T C"; frequencies " 0.44 0.56"; depth 25 ; unknown ; synonymous GL193459.1 samtools variation 618377 618377 . . . alleles " G A"; frequencies " 0.270833333333333 0.729166666666667"; depth 48 ; unknown ; synonymous GL193459.1 samtools variation 618617 618617 . . . alleles " C T"; frequencies " 0.282051282051282 0.717948717948718"; depth 39 ; unknown ; synonymous GL193461.1 samtools variation 47699 47699 . . . alleles " G C"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; unknown ; N/A GL193461.1 samtools variation 48539 48539 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL193461.1 samtools variation 49467 49467 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL193461.1 samtools variation 49498 49498 . . . alleles " G A"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL193461.1 samtools variation 49599 49599 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; N/A GL193461.1 samtools variation 49611 49611 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193461.1 samtools variation 56167 56167 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193461.1 samtools variation 56394 56394 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193461.1 samtools variation 57200 57200 . . . alleles " G T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193461.1 samtools variation 58297 58297 . . . alleles " T A"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL193461.1 samtools variation 231436 231436 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193461.1 samtools variation 236882 236882 . . . alleles " T A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL193461.1 samtools variation 528896 528896 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193462.1 samtools variation 662909 662909 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193463.1 samtools variation 295056 295056 . . . alleles " G C"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193463.1 samtools variation 295077 295077 . . . alleles " A G"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193463.1 samtools variation 295111 295111 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; N/A GL193463.1 samtools variation 297142 297142 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL193463.1 samtools variation 297601 297601 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 187 ; known ; synonymous GL193463.1 samtools variation 297657 297657 . . . alleles " G T"; frequencies " 0.608294930875576 0.391705069124424"; depth 217 ; known ; non-synonymous GL193463.1 samtools variation 303768 303768 . . . alleles " C T"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; known ; synonymous GL193463.1 samtools variation 303786 303786 . . . alleles " T C"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; known ; synonymous GL193463.1 samtools variation 304323 304323 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; known ; synonymous GL193463.1 samtools variation 304677 304677 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL193463.1 samtools variation 304849 304849 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193463.1 samtools variation 309122 309122 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193463.1 samtools variation 327090 327090 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193463.1 samtools variation 327101 327101 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193463.1 samtools variation 327170 327170 . . . alleles " A C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL193463.1 samtools variation 327256 327256 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL193463.1 samtools variation 328635 328635 . . . alleles " T G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193463.1 samtools variation 328656 328656 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193463.1 samtools variation 329144 329144 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; N/A GL193463.1 samtools variation 329363 329363 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193463.1 samtools variation 329559 329559 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL193463.1 samtools variation 329673 329673 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 20 ; known ; N/A GL193463.1 samtools variation 329761 329761 . . . alleles " A G"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; known ; N/A GL193463.1 samtools variation 330890 330890 . . . alleles " A G"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL193463.1 samtools variation 335528 335528 . . . alleles " T C"; frequencies " 0.575 0.425"; depth 40 ; unknown ; N/A GL193463.1 samtools variation 335532 335532 . . . alleles " A C"; frequencies " 0.551020408163265 0.448979591836735"; depth 49 ; unknown ; N/A GL193463.1 samtools variation 336917 336917 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193463.1 samtools variation 342432 342432 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; N/A GL193463.1 samtools variation 342447 342447 . . . alleles " T C"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL193463.1 samtools variation 343266 343266 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL193463.1 samtools variation 343820 343820 . . . alleles " A G"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; known ; N/A GL193463.1 samtools variation 345937 345937 . . . alleles " G C"; frequencies " 0.542857142857143 0.457142857142857"; depth 105 ; known ; N/A GL193463.1 samtools variation 346934 346934 . . . alleles " T C"; frequencies " 0.685185185185185 0.314814814814815"; depth 108 ; unknown ; N/A GL193463.1 samtools variation 348206 348206 . . . alleles " G A"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL193463.1 samtools variation 348643 348643 . . . alleles " G A"; frequencies " 0.21875 0.78125"; depth 32 ; known ; N/A GL193463.1 samtools variation 348953 348953 . . . alleles " A G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL193463.1 samtools variation 348984 348984 . . . alleles " T C"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; known ; N/A GL193463.1 samtools variation 361858 361858 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193463.1 samtools variation 363786 363786 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; known ; N/A GL193463.1 samtools variation 364376 364376 . . . alleles " T A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193463.1 samtools variation 364509 364509 . . . alleles " G A"; frequencies " 0.560606060606061 0.439393939393939"; depth 66 ; unknown ; N/A GL193463.1 samtools variation 367291 367291 . . . alleles " C T"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; unknown ; N/A GL193463.1 samtools variation 367495 367495 . . . alleles " C T"; frequencies " 0.314285714285714 0.685714285714286"; depth 35 ; known ; N/A GL193463.1 samtools variation 367513 367513 . . . alleles " G A"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL193463.1 samtools variation 367878 367878 . . . alleles " C T"; frequencies " 0.585372270455143 0.414364640883978"; depth 3801 ; unknown ; non-synonymous GL193463.1 samtools variation 368073 368073 . . . alleles " G C"; frequencies " 0.511401486036382 0.488598513963618"; depth 3903 ; unknown ; non-synonymous GL193463.1 samtools variation 368141 368141 . . . alleles " C T"; frequencies " 0.607836787564767 0.392163212435233"; depth 3088 ; unknown ; non-synonymous GL193463.1 samtools variation 368245 368245 . . . alleles " C T"; frequencies " 0.573236889692586 0.426763110307414"; depth 553 ; unknown ; N/A GL193463.1 samtools variation 368663 368663 . . . alleles " A G"; frequencies " 0.720682302771855 0.279317697228145"; depth 469 ; unknown ; N/A GL193463.1 samtools variation 368738 368738 . . . alleles " T C"; frequencies " 0.581196581196581 0.418803418803419"; depth 234 ; unknown ; N/A GL193463.1 samtools variation 369056 369056 . . . alleles " C T"; frequencies " 0.528819762122598 0.471180237877402"; depth 1093 ; unknown ; N/A GL193463.1 samtools variation 369152 369152 . . . alleles " A G"; frequencies " 0.572938689217759 0.427061310782241"; depth 473 ; unknown ; N/A GL193463.1 samtools variation 369334 369334 . . . alleles " G A"; frequencies " 0.488126649076517 0.511873350923483"; depth 379 ; unknown ; N/A GL193463.1 samtools variation 370527 370527 . . . alleles " G A"; frequencies " 0.78494623655914 0.21505376344086"; depth 465 ; unknown ; N/A GL193463.1 samtools variation 370583 370583 . . . alleles " T G"; frequencies " 0.730392156862745 0.269607843137255"; depth 204 ; unknown ; N/A GL193463.1 samtools variation 370848 370848 . . . alleles " G T"; frequencies " 0.389671361502347 0.610328638497653"; depth 213 ; unknown ; N/A GL193463.1 samtools variation 370936 370936 . . . alleles " T A"; frequencies " 0.481132075471698 0.518867924528302"; depth 106 ; unknown ; N/A GL193463.1 samtools variation 371459 371459 . . . alleles " A G"; frequencies " 0.563106796116505 0.436893203883495"; depth 206 ; unknown ; N/A GL193463.1 samtools variation 371794 371794 . . . alleles " G A"; frequencies " 0.581005586592179 0.418994413407821"; depth 179 ; unknown ; N/A GL193463.1 samtools variation 371843 371843 . . . alleles " G A"; frequencies " 0.569620253164557 0.430379746835443"; depth 79 ; unknown ; N/A GL193463.1 samtools variation 373233 373233 . . . alleles " T C"; frequencies " 0.519607843137255 0.480392156862745"; depth 306 ; unknown ; N/A GL193463.1 samtools variation 373418 373418 . . . alleles " C T"; frequencies " 0.7875 0.2125"; depth 560 ; unknown ; N/A GL193463.1 samtools variation 373867 373867 . . . alleles " G A"; frequencies " 0.450121654501217 0.549878345498783"; depth 411 ; unknown ; N/A GL193463.1 samtools variation 374062 374062 . . . alleles " A G"; frequencies " 0.529661016949153 0.470338983050847"; depth 236 ; unknown ; N/A GL193463.1 samtools variation 374264 374264 . . . alleles " G A"; frequencies " 0.535971223021583 0.464028776978417"; depth 556 ; unknown ; N/A GL193463.1 samtools variation 374761 374761 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 49 ; unknown ; N/A GL193463.1 samtools variation 374791 374791 . . . alleles " G A"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL193463.1 samtools variation 378574 378574 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 42 ; unknown ; N/A GL193463.1 samtools variation 378741 378741 . . . alleles " T C"; frequencies " 0.46218487394958 0.53781512605042"; depth 119 ; unknown ; N/A GL193463.1 samtools variation 379402 379402 . . . alleles " G T"; frequencies " 0.527331189710611 0.472668810289389"; depth 311 ; unknown ; N/A GL193463.1 samtools variation 379805 379805 . . . alleles " A C"; frequencies " 0.735449735449735 0.264550264550265"; depth 189 ; unknown ; N/A GL193463.1 samtools variation 379982 379982 . . . alleles " G A"; frequencies " 0.725490196078431 0.274509803921569"; depth 255 ; unknown ; N/A GL193463.1 samtools variation 380018 380018 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 189 ; unknown ; N/A GL193463.1 samtools variation 380382 380382 . . . alleles " C T"; frequencies " 0.561290322580645 0.438709677419355"; depth 155 ; unknown ; N/A GL193463.1 samtools variation 380529 380529 . . . alleles " G A"; frequencies " 0.642156862745098 0.357843137254902"; depth 204 ; unknown ; N/A GL193463.1 samtools variation 380755 380755 . . . alleles " T C"; frequencies " 0.701388888888889 0.298611111111111"; depth 432 ; unknown ; N/A GL193463.1 samtools variation 380816 380816 . . . alleles " C T"; frequencies " 0.66566265060241 0.33433734939759"; depth 332 ; unknown ; N/A GL193463.1 samtools variation 381681 381681 . . . alleles " G C"; frequencies " 0.458715596330275 0.541284403669725"; depth 109 ; unknown ; N/A GL193463.1 samtools variation 381802 381802 . . . alleles " G A"; frequencies " 0.597014925373134 0.402985074626866"; depth 67 ; unknown ; N/A GL193463.1 samtools variation 381828 381828 . . . alleles " T G"; frequencies " 0.797101449275362 0.202898550724638"; depth 69 ; unknown ; N/A GL193463.1 samtools variation 382563 382563 . . . alleles " T A"; frequencies " 0.241379310344828 0.758620689655172"; depth 29 ; known ; N/A GL193463.1 samtools variation 382876 382876 . . . alleles " C A"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL193463.1 samtools variation 382893 382893 . . . alleles " C T"; frequencies " 0.512820512820513 0.487179487179487"; depth 39 ; unknown ; N/A GL193463.1 samtools variation 382951 382951 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; N/A GL193463.1 samtools variation 383348 383348 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL193463.1 samtools variation 420499 420499 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; known ; N/A GL193464.1 samtools variation 609718 609718 . . . alleles " A G"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; non-synonymous GL193466.1 samtools variation 296596 296596 . . . alleles " G A"; frequencies " 0.783132530120482 0.216867469879518"; depth 166 ; unknown ; synonymous GL193466.1 samtools variation 296788 296788 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193466.1 samtools variation 302931 302931 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 63 ; unknown ; synonymous GL193466.1 samtools variation 303062 303062 . . . alleles " C G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL193466.1 samtools variation 305800 305800 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193466.1 samtools variation 324641 324641 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193466.1 samtools variation 357257 357257 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; N/A GL193466.1 samtools variation 363603 363603 . . . alleles " C A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193466.1 samtools variation 366492 366492 . . . alleles " G A"; frequencies " 0.797101449275362 0.202898550724638"; depth 690 ; unknown ; non-synonymous GL193466.1 samtools variation 366497 366497 . . . alleles " T C"; frequencies " 0.792341678939617 0.207658321060383"; depth 679 ; unknown ; non-synonymous GL193466.1 samtools variation 372565 372565 . . . alleles " A G"; frequencies " 0.754098360655738 0.245901639344262"; depth 61 ; unknown ; N/A GL193466.1 samtools variation 375421 375421 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193466.1 samtools variation 375449 375449 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193466.1 samtools variation 377728 377728 . . . alleles " C A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193470.1 samtools variation 23316 23316 . . . alleles " T G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193470.1 samtools variation 23428 23428 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193470.1 samtools variation 25904 25904 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193470.1 samtools variation 25905 25905 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193470.1 samtools variation 26106 26106 . . . alleles " C T"; frequencies " 0.701492537313433 0.298507462686567"; depth 67 ; unknown ; N/A GL193470.1 samtools variation 26427 26427 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL193470.1 samtools variation 27024 27024 . . . alleles " G A"; frequencies " 0.68 0.32"; depth 75 ; unknown ; N/A GL193470.1 samtools variation 144049 144049 . . . alleles " G T"; frequencies " 0.458100558659218 0.541899441340782"; depth 179 ; known ; non-synonymous GL193470.1 samtools variation 235795 235795 . . . alleles " C A"; frequencies " 0.313725490196078 0.686274509803922"; depth 51 ; known ; N/A GL193470.1 samtools variation 235959 235959 . . . alleles " C T"; frequencies " 0.741379310344828 0.258620689655172"; depth 58 ; unknown ; N/A GL193470.1 samtools variation 251535 251535 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; non-synonymous GL193470.1 samtools variation 360592 360592 . . . alleles " G C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193470.1 samtools variation 360594 360594 . . . alleles " T G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193470.1 samtools variation 369532 369532 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL193470.1 samtools variation 370009 370009 . . . alleles " C T"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; N/A GL193470.1 samtools variation 381408 381408 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193470.1 samtools variation 381482 381482 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL193470.1 samtools variation 382768 382768 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 32 ; unknown ; N/A GL193470.1 samtools variation 382939 382939 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 48 ; unknown ; N/A GL193470.1 samtools variation 385346 385346 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 195 ; known ; N/A GL193470.1 samtools variation 385519 385519 . . . alleles " A G"; frequencies " 0.281481481481481 0.718518518518519"; depth 135 ; known ; N/A GL193470.1 samtools variation 385583 385583 . . . alleles " G C"; frequencies " 0.669172932330827 0.323308270676692"; depth 133 ; unknown ; N/A GL193470.1 samtools variation 385597 385597 . . . alleles " C T"; frequencies " 0.794285714285714 0.205714285714286"; depth 175 ; unknown ; N/A GL193470.1 samtools variation 386181 386181 . . . alleles " G A"; frequencies " 0.618357487922705 0.381642512077295"; depth 207 ; unknown ; N/A GL193470.1 samtools variation 389647 389647 . . . alleles " G A"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; known ; N/A GL193470.1 samtools variation 389880 389880 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL193470.1 samtools variation 407031 407031 . . . alleles " C T"; frequencies " 0.678571428571429 0.321428571428571"; depth 56 ; unknown ; N/A GL193470.1 samtools variation 407558 407558 . . . alleles " C A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193470.1 samtools variation 411413 411413 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; synonymous GL193470.1 samtools variation 498748 498748 . . . alleles " T C"; frequencies " 0.693415637860082 0.306584362139918"; depth 486 ; unknown ; N/A GL193470.1 samtools variation 500059 500059 . . . alleles " G A"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL193470.1 samtools variation 504670 504670 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193470.1 samtools variation 506075 506075 . . . alleles " C A"; frequencies " 0.561643835616438 0.438356164383562"; depth 73 ; unknown ; N/A GL193470.1 samtools variation 524574 524574 . . . alleles " T C"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL193470.1 samtools variation 536006 536006 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL193470.1 samtools variation 563682 563682 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 60 ; unknown ; non-synonymous GL193470.1 samtools variation 564612 564612 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 60 ; unknown ; N/A GL193472.1 samtools variation 385216 385216 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; known ; synonymous GL193473.1 samtools variation 375116 375116 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193473.1 samtools variation 512650 512650 . . . alleles " T C"; frequencies " 0.409090909090909 0.590909090909091"; depth 44 ; unknown ; N/A GL193473.1 samtools variation 513080 513080 . . . alleles " G A"; frequencies " 0.564516129032258 0.435483870967742"; depth 124 ; unknown ; N/A GL193473.1 samtools variation 516107 516107 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL193473.1 samtools variation 517284 517284 . . . alleles " A G"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; unknown ; N/A GL193473.1 samtools variation 518510 518510 . . . alleles " G C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193473.1 samtools variation 521777 521777 . . . alleles " C T"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL193473.1 samtools variation 522783 522783 . . . alleles " G A"; frequencies " 0.633928571428571 0.366071428571429"; depth 224 ; unknown ; N/A GL193473.1 samtools variation 527624 527624 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL193476.1 samtools variation 128314 128314 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193476.1 samtools variation 215938 215938 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 44 ; unknown ; N/A GL193476.1 samtools variation 243342 243342 . . . alleles " C G"; frequencies " 0.72972972972973 0.27027027027027"; depth 74 ; unknown ; synonymous GL193476.1 samtools variation 244147 244147 . . . alleles " T G"; frequencies " 0.23728813559322 0.76271186440678"; depth 59 ; unknown ; non-synonymous GL193476.1 samtools variation 404828 404828 . . . alleles " G A"; frequencies " 0.711864406779661 0.288135593220339"; depth 59 ; unknown ; N/A GL193476.1 samtools variation 466146 466146 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193478.1 samtools variation 118954 118954 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 45 ; known ; N/A GL193478.1 samtools variation 136719 136719 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL193478.1 samtools variation 139298 139298 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL193478.1 samtools variation 143618 143618 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL193478.1 samtools variation 144363 144363 . . . alleles " T C"; frequencies " 0.363934426229508 0.636065573770492"; depth 305 ; known ; non-synonymous GL193478.1 samtools variation 169128 169128 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; known ; non-synonymous GL193478.1 samtools variation 229928 229928 . . . alleles " C T"; frequencies " 0.222222222222222 0.777777777777778"; depth 54 ; known ; synonymous GL193478.1 samtools variation 233362 233362 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 26 ; unknown ; non-synonymous GL193478.1 samtools variation 366620 366620 . . . alleles " T G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193478.1 samtools variation 367749 367749 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193478.1 samtools variation 367844 367844 . . . alleles " G T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193478.1 samtools variation 367974 367974 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL193478.1 samtools variation 368610 368610 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 35 ; unknown ; N/A GL193478.1 samtools variation 368617 368617 . . . alleles " C T"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL193478.1 samtools variation 368684 368684 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL193478.1 samtools variation 369286 369286 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193478.1 samtools variation 372539 372539 . . . alleles " T C"; frequencies " 0.304964539007092 0.691489361702128"; depth 282 ; known ; N/A GL193478.1 samtools variation 376119 376119 . . . alleles " C G"; frequencies " 0.363636363636364 0.636363636363636"; depth 143 ; known ; N/A GL193478.1 samtools variation 376164 376164 . . . alleles " C T"; frequencies " 0.728971962616822 0.271028037383178"; depth 107 ; unknown ; N/A GL193478.1 samtools variation 376189 376189 . . . alleles " T C"; frequencies " 0.614035087719298 0.37719298245614"; depth 114 ; known ; N/A GL193478.1 samtools variation 377493 377493 . . . alleles " G T"; frequencies " 0.71969696969697 0.28030303030303"; depth 132 ; unknown ; N/A GL193478.1 samtools variation 377586 377586 . . . alleles " G A"; frequencies " 0.34375 0.65625"; depth 128 ; known ; N/A GL193478.1 samtools variation 377704 377704 . . . alleles " A G"; frequencies " 0.733812949640288 0.266187050359712"; depth 139 ; unknown ; N/A GL193478.1 samtools variation 377795 377795 . . . alleles " T C"; frequencies " 0.715686274509804 0.284313725490196"; depth 102 ; unknown ; N/A GL193478.1 samtools variation 378750 378750 . . . alleles " G A"; frequencies " 0.653846153846154 0.346153846153846"; depth 52 ; known ; N/A GL193478.1 samtools variation 378962 378962 . . . alleles " A G"; frequencies " 0.243346007604563 0.756653992395437"; depth 263 ; known ; N/A GL193478.1 samtools variation 379871 379871 . . . alleles " A G"; frequencies " 0.26984126984127 0.73015873015873"; depth 63 ; known ; N/A GL193478.1 samtools variation 380039 380039 . . . alleles " G C"; frequencies " 0.23728813559322 0.76271186440678"; depth 118 ; known ; N/A GL193478.1 samtools variation 380138 380138 . . . alleles " C A"; frequencies " 0.701754385964912 0.298245614035088"; depth 57 ; known ; N/A GL193478.1 samtools variation 380181 380181 . . . alleles " C G"; frequencies " 0.227272727272727 0.772727272727273"; depth 44 ; unknown ; N/A GL193478.1 samtools variation 380185 380185 . . . alleles " T G"; frequencies " 0.234042553191489 0.765957446808511"; depth 47 ; unknown ; N/A GL193478.1 samtools variation 381212 381212 . . . alleles " A G"; frequencies " 0.325349301397206 0.672654690618762"; depth 501 ; unknown ; N/A GL193478.1 samtools variation 381349 381349 . . . alleles " C T"; frequencies " 0.419811320754717 0.580188679245283"; depth 212 ; known ; N/A GL193478.1 samtools variation 381565 381565 . . . alleles " C T"; frequencies " 0.226252158894646 0.773747841105354"; depth 579 ; known ; N/A GL193478.1 samtools variation 381853 381853 . . . alleles " T C"; frequencies " 0.705202312138728 0.294797687861272"; depth 173 ; known ; N/A GL193478.1 samtools variation 381865 381865 . . . alleles " T C"; frequencies " 0.593406593406593 0.406593406593407"; depth 273 ; known ; N/A GL193478.1 samtools variation 381950 381950 . . . alleles " T C"; frequencies " 0.400537634408602 0.599462365591398"; depth 372 ; known ; N/A GL193478.1 samtools variation 383605 383605 . . . alleles " T C"; frequencies " 0.210526315789474 0.789473684210526"; depth 38 ; known ; N/A GL193478.1 samtools variation 383687 383687 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193478.1 samtools variation 391331 391331 . . . alleles " A C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193478.1 samtools variation 410166 410166 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193478.1 samtools variation 524199 524199 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193478.1 samtools variation 525786 525786 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL193478.1 samtools variation 526142 526142 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193478.1 samtools variation 526164 526164 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193478.1 samtools variation 527770 527770 . . . alleles " A C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193478.1 samtools variation 528217 528217 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193478.1 samtools variation 528602 528602 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL193478.1 samtools variation 528615 528615 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL193478.1 samtools variation 528832 528832 . . . alleles " A G"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; N/A GL193478.1 samtools variation 528841 528841 . . . alleles " G C"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; known ; N/A GL193478.1 samtools variation 528883 528883 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193478.1 samtools variation 528887 528887 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193478.1 samtools variation 541116 541116 . . . alleles " G C"; frequencies " 0.25 0.75"; depth 36 ; known ; N/A GL193478.1 samtools variation 541344 541344 . . . alleles " C T"; frequencies " 0.676923076923077 0.323076923076923"; depth 65 ; known ; N/A GL193478.1 samtools variation 541485 541485 . . . alleles " C G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL193478.1 samtools variation 541863 541863 . . . alleles " C T"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; known ; N/A GL193478.1 samtools variation 542112 542112 . . . alleles " T C"; frequencies " 0.281045751633987 0.718954248366013"; depth 153 ; known ; synonymous GL193478.1 samtools variation 546567 546567 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193478.1 samtools variation 546619 546619 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL193478.1 samtools variation 546680 546680 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; known ; N/A GL193478.1 samtools variation 546874 546874 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193478.1 samtools variation 547229 547229 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193478.1 samtools variation 552646 552646 . . . alleles " T C"; frequencies " 0.679144385026738 0.320855614973262"; depth 187 ; known ; non-synonymous GL193478.1 samtools variation 567514 567514 . . . alleles " C G"; frequencies " 0.385026737967914 0.614973262032086"; depth 374 ; unknown ; N/A GL193478.1 samtools variation 567936 567936 . . . alleles " A G"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL193479.1 samtools variation 423016 423016 . . . alleles " T A"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193479.1 samtools variation 439116 439116 . . . alleles " C G"; frequencies " 0.69620253164557 0.30379746835443"; depth 79 ; known ; N/A GL193479.1 samtools variation 439364 439364 . . . alleles " T G"; frequencies " 0.298245614035088 0.701754385964912"; depth 57 ; known ; N/A GL193479.1 samtools variation 439845 439845 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 63 ; known ; N/A GL193479.1 samtools variation 439877 439877 . . . alleles " T C"; frequencies " 0.347826086956522 0.652173913043478"; depth 69 ; known ; N/A GL193479.1 samtools variation 439936 439936 . . . alleles " T A"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; N/A GL193479.1 samtools variation 439937 439937 . . . alleles " T A"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; N/A GL193479.1 samtools variation 440656 440656 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193479.1 samtools variation 446413 446413 . . . alleles " A T"; frequencies " 0.748837209302326 0.25"; depth 860 ; known ; N/A GL193479.1 samtools variation 446498 446498 . . . alleles " C T"; frequencies " 0.222087378640777 0.777912621359223"; depth 824 ; known ; N/A GL193479.1 samtools variation 446654 446654 . . . alleles " G A"; frequencies " 0.798561151079137 0.201438848920863"; depth 139 ; known ; N/A GL193479.1 samtools variation 446824 446824 . . . alleles " T C"; frequencies " 0.23021582733813 0.76978417266187"; depth 278 ; known ; N/A GL193479.1 samtools variation 447939 447939 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 32 ; known ; N/A GL193479.1 samtools variation 449334 449334 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; N/A GL193479.1 samtools variation 450465 450465 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL193479.1 samtools variation 450663 450663 . . . alleles " C T"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; unknown ; N/A GL193479.1 samtools variation 450829 450829 . . . alleles " C T"; frequencies " 0.36 0.64"; depth 25 ; known ; N/A GL193479.1 samtools variation 451009 451009 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193479.1 samtools variation 451018 451018 . . . alleles " A C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193479.1 samtools variation 451337 451337 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193479.1 samtools variation 451419 451419 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193479.1 samtools variation 451469 451469 . . . alleles " C T"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; known ; N/A GL193479.1 samtools variation 453068 453068 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193479.1 samtools variation 456528 456528 . . . alleles " G T"; frequencies " 0.203703703703704 0.796296296296296"; depth 54 ; known ; N/A GL193479.1 samtools variation 469539 469539 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; N/A GL193479.1 samtools variation 480804 480804 . . . alleles " A C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193479.1 samtools variation 482134 482134 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193479.1 samtools variation 482447 482447 . . . alleles " T C"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL193479.1 samtools variation 483816 483816 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193479.1 samtools variation 483886 483886 . . . alleles " C G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL193479.1 samtools variation 483985 483985 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193479.1 samtools variation 483988 483988 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193479.1 samtools variation 493603 493603 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193479.1 samtools variation 499987 499987 . . . alleles " T A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193479.1 samtools variation 500699 500699 . . . alleles " T G"; frequencies " 0.706666666666667 0.293333333333333"; depth 75 ; unknown ; N/A GL193479.1 samtools variation 501154 501154 . . . alleles " A G"; frequencies " 0.737704918032787 0.262295081967213"; depth 61 ; unknown ; N/A GL193479.1 samtools variation 501420 501420 . . . alleles " A T"; frequencies " 0.752808988764045 0.247191011235955"; depth 89 ; unknown ; N/A GL193479.1 samtools variation 501459 501459 . . . alleles " T C"; frequencies " 0.685950413223141 0.31404958677686"; depth 121 ; unknown ; N/A GL193479.1 samtools variation 502503 502503 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193479.1 samtools variation 502507 502507 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193479.1 samtools variation 503330 503330 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193479.1 samtools variation 504494 504494 . . . alleles " T C"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; known ; N/A GL193479.1 samtools variation 505685 505685 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193479.1 samtools variation 505717 505717 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193479.1 samtools variation 505968 505968 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL193479.1 samtools variation 526445 526445 . . . alleles " T A"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL193479.1 samtools variation 526449 526449 . . . alleles " G T"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL193479.1 samtools variation 530333 530333 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193479.1 samtools variation 532828 532828 . . . alleles " C G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL193479.1 samtools variation 533051 533051 . . . alleles " G C"; frequencies " 0.283132530120482 0.716867469879518"; depth 166 ; known ; N/A GL193479.1 samtools variation 533402 533402 . . . alleles " T C"; frequencies " 0.671641791044776 0.328358208955224"; depth 67 ; known ; N/A GL193479.1 samtools variation 533591 533591 . . . alleles " G A"; frequencies " 0.650246305418719 0.349753694581281"; depth 203 ; known ; N/A GL193479.1 samtools variation 534090 534090 . . . alleles " A G"; frequencies " 0.423076923076923 0.576923076923077"; depth 52 ; known ; N/A GL193479.1 samtools variation 534167 534167 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 51 ; known ; N/A GL193479.1 samtools variation 535895 535895 . . . alleles " C T"; frequencies " 0.425 0.575"; depth 80 ; known ; N/A GL193479.1 samtools variation 535926 535926 . . . alleles " T C"; frequencies " 0.694444444444444 0.305555555555556"; depth 72 ; unknown ; N/A GL193479.1 samtools variation 536039 536039 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL193479.1 samtools variation 536360 536360 . . . alleles " A T"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL193479.1 samtools variation 537069 537069 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193479.1 samtools variation 537531 537531 . . . alleles " C A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL193479.1 samtools variation 537820 537820 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 72 ; known ; N/A GL193479.1 samtools variation 537869 537869 . . . alleles " T C"; frequencies " 0.225490196078431 0.774509803921569"; depth 102 ; known ; N/A GL193479.1 samtools variation 537962 537962 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 76 ; known ; N/A GL193479.1 samtools variation 552088 552088 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193479.1 samtools variation 552107 552107 . . . alleles " C G"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL193479.1 samtools variation 554845 554845 . . . alleles " G T"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL193479.1 samtools variation 554972 554972 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL193479.1 samtools variation 560371 560371 . . . alleles " G A"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL193479.1 samtools variation 562657 562657 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193479.1 samtools variation 563713 563713 . . . alleles " T C"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; known ; N/A GL193479.1 samtools variation 563760 563760 . . . alleles " C T"; frequencies " 0.59375 0.40625"; depth 64 ; known ; N/A GL193479.1 samtools variation 563825 563825 . . . alleles " T C"; frequencies " 0.288461538461538 0.711538461538462"; depth 52 ; known ; N/A GL193479.1 samtools variation 564133 564133 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193479.1 samtools variation 564545 564545 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193479.1 samtools variation 583823 583823 . . . alleles " C T"; frequencies " 0.212121212121212 0.787878787878788"; depth 33 ; known ; N/A GL193479.1 samtools variation 586534 586534 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193479.1 samtools variation 586874 586874 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL193479.1 samtools variation 596818 596818 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193479.1 samtools variation 596865 596865 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193479.1 samtools variation 597042 597042 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193479.1 samtools variation 597444 597444 . . . alleles " C T"; frequencies " 0.634615384615385 0.365384615384615"; depth 52 ; unknown ; N/A GL193479.1 samtools variation 604570 604570 . . . alleles " T G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193479.1 samtools variation 607002 607002 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193479.1 samtools variation 615561 615561 . . . alleles " A C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193479.1 samtools variation 615592 615592 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193479.1 samtools variation 640156 640156 . . . alleles " T G"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL193479.1 samtools variation 646794 646794 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193479.1 samtools variation 655966 655966 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193479.1 samtools variation 661369 661369 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193481.1 samtools variation 127855 127855 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 39 ; unknown ; synonymous GL193481.1 samtools variation 271429 271429 . . . alleles " T C"; frequencies " 0.621301775147929 0.378698224852071"; depth 169 ; unknown ; synonymous GL193481.1 samtools variation 272410 272410 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193481.1 samtools variation 278956 278956 . . . alleles " C T"; frequencies " 0.620689655172414 0.379310344827586"; depth 87 ; unknown ; N/A GL193481.1 samtools variation 304567 304567 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; N/A GL193481.1 samtools variation 304632 304632 . . . alleles " G A"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; known ; N/A GL193481.1 samtools variation 304759 304759 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL193481.1 samtools variation 347417 347417 . . . alleles " C T"; frequencies " 0.419117647058824 0.580882352941177"; depth 136 ; unknown ; N/A GL193481.1 samtools variation 347546 347546 . . . alleles " A G"; frequencies " 0.39622641509434 0.60377358490566"; depth 53 ; unknown ; N/A GL193481.1 samtools variation 347838 347838 . . . alleles " A C"; frequencies " 0.466666666666667 0.533333333333333"; depth 75 ; unknown ; N/A GL193481.1 samtools variation 348016 348016 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 55 ; unknown ; N/A GL193481.1 samtools variation 349220 349220 . . . alleles " T C"; frequencies " 0.753623188405797 0.246376811594203"; depth 69 ; unknown ; N/A GL193481.1 samtools variation 349515 349515 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; unknown ; N/A GL193481.1 samtools variation 350296 350296 . . . alleles " G A"; frequencies " 0.355555555555556 0.644444444444444"; depth 45 ; unknown ; N/A GL193481.1 samtools variation 350476 350476 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL193481.1 samtools variation 351187 351187 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL193481.1 samtools variation 351703 351703 . . . alleles " G T"; frequencies " 0.363636363636364 0.636363636363636"; depth 33 ; unknown ; N/A GL193481.1 samtools variation 351719 351719 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 33 ; unknown ; N/A GL193481.1 samtools variation 353263 353263 . . . alleles " G T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL193481.1 samtools variation 353511 353511 . . . alleles " T C"; frequencies " 0.626666666666667 0.373333333333333"; depth 150 ; unknown ; N/A GL193481.1 samtools variation 395159 395159 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193481.1 samtools variation 395284 395284 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; unknown ; N/A GL193481.1 samtools variation 396304 396304 . . . alleles " G C"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL193481.1 samtools variation 396328 396328 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL193481.1 samtools variation 396586 396586 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193481.1 samtools variation 405840 405840 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL193481.1 samtools variation 437571 437571 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL193481.1 samtools variation 440197 440197 . . . alleles " T A"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; known ; N/A GL193481.1 samtools variation 441959 441959 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 72 ; unknown ; synonymous GL193481.1 samtools variation 443320 443320 . . . alleles " T C"; frequencies " 0.337142857142857 0.657142857142857"; depth 175 ; known ; N/A GL193481.1 samtools variation 443575 443575 . . . alleles " T C"; frequencies " 0.344444444444444 0.655555555555556"; depth 90 ; known ; N/A GL193481.1 samtools variation 443638 443638 . . . alleles " G A"; frequencies " 0.295774647887324 0.704225352112676"; depth 71 ; known ; N/A GL193481.1 samtools variation 443702 443702 . . . alleles " T C"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; known ; N/A GL193481.1 samtools variation 473475 473475 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193481.1 samtools variation 475161 475161 . . . alleles " C T"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; synonymous GL193481.1 samtools variation 486063 486063 . . . alleles " C T"; frequencies " 0.336 0.664"; depth 125 ; unknown ; synonymous GL193481.1 samtools variation 486087 486087 . . . alleles " A G"; frequencies " 0.682242990654206 0.317757009345794"; depth 107 ; unknown ; synonymous GL193481.1 samtools variation 545300 545300 . . . alleles " C G"; frequencies " 0.262996941896024 0.737003058103975"; depth 327 ; known ; N/A GL193481.1 samtools variation 545432 545432 . . . alleles " C G"; frequencies " 0.509505703422053 0.490494296577947"; depth 526 ; known ; N/A GL193481.1 samtools variation 545614 545614 . . . alleles " G A"; frequencies " 0.275229357798165 0.724770642201835"; depth 109 ; known ; N/A GL193481.1 samtools variation 546069 546069 . . . alleles " T G"; frequencies " 0.75609756097561 0.24390243902439"; depth 82 ; known ; N/A GL193481.1 samtools variation 549192 549192 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193481.1 samtools variation 551247 551247 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; N/A GL193481.1 samtools variation 551394 551394 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193481.1 samtools variation 554346 554346 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL193481.1 samtools variation 554625 554625 . . . alleles " C G"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL193481.1 samtools variation 554750 554750 . . . alleles " A G"; frequencies " 0.20911528150134 0.790884718498659"; depth 373 ; unknown ; N/A GL193481.1 samtools variation 555322 555322 . . . alleles " T G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193483.1 samtools variation 288102 288102 . . . alleles " C A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; synonymous GL193483.1 samtools variation 447107 447107 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193483.1 samtools variation 450508 450508 . . . alleles " C G"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; known ; N/A GL193483.1 samtools variation 450938 450938 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193483.1 samtools variation 451942 451942 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193483.1 samtools variation 452499 452499 . . . alleles " G A"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; unknown ; N/A GL193483.1 samtools variation 458097 458097 . . . alleles " T C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL193483.1 samtools variation 458433 458433 . . . alleles " A C"; frequencies " 0.688524590163934 0.311475409836066"; depth 61 ; unknown ; N/A GL193483.1 samtools variation 459128 459128 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL193483.1 samtools variation 459297 459297 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193483.1 samtools variation 460388 460388 . . . alleles " G A"; frequencies " 0.635761589403974 0.364238410596026"; depth 151 ; unknown ; N/A GL193483.1 samtools variation 464619 464619 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193483.1 samtools variation 481096 481096 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193483.1 samtools variation 481227 481227 . . . alleles " T C"; frequencies " 0.637931034482759 0.362068965517241"; depth 58 ; unknown ; N/A GL193483.1 samtools variation 481746 481746 . . . alleles " G A"; frequencies " 0.622950819672131 0.377049180327869"; depth 61 ; known ; N/A GL193483.1 samtools variation 481842 481842 . . . alleles " A T"; frequencies " 0.722222222222222 0.277777777777778"; depth 54 ; unknown ; N/A GL193483.1 samtools variation 481918 481918 . . . alleles " T C"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; unknown ; N/A GL193483.1 samtools variation 482474 482474 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193483.1 samtools variation 484936 484936 . . . alleles " A C"; frequencies " 0.402912621359223 0.597087378640777"; depth 206 ; known ; N/A GL193483.1 samtools variation 495390 495390 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193483.1 samtools variation 503915 503915 . . . alleles " A C"; frequencies " 0.646153846153846 0.353846153846154"; depth 130 ; unknown ; synonymous GL193483.1 samtools variation 544030 544030 . . . alleles " G A"; frequencies " 0.780346820809249 0.219653179190751"; depth 173 ; unknown ; synonymous GL193483.1 samtools variation 556669 556669 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193483.1 samtools variation 558189 558189 . . . alleles " T C"; frequencies " 0.325757575757576 0.674242424242424"; depth 132 ; known ; non-synonymous GL193484.1 samtools variation 376715 376715 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 56 ; unknown ; synonymous GL193484.1 samtools variation 376741 376741 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 56 ; unknown ; non-synonymous GL193484.1 samtools variation 377471 377471 . . . alleles " G A"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; known ; N/A GL193484.1 samtools variation 380893 380893 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193484.1 samtools variation 381027 381027 . . . alleles " G T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193484.1 samtools variation 383122 383122 . . . alleles " C A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193484.1 samtools variation 383351 383351 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193484.1 samtools variation 385528 385528 . . . alleles " A G"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL193484.1 samtools variation 386335 386335 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193484.1 samtools variation 386478 386478 . . . alleles " T C"; frequencies " 0.433962264150943 0.566037735849057"; depth 53 ; unknown ; non-synonymous GL193484.1 samtools variation 402076 402076 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 30 ; known ; N/A GL193484.1 samtools variation 402111 402111 . . . alleles " T A"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; N/A GL193484.1 samtools variation 420041 420041 . . . alleles " T A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193484.1 samtools variation 427157 427157 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193485.1 samtools variation 13753 13753 . . . alleles " G A"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; synonymous GL193485.1 samtools variation 373275 373275 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; unknown ; N/A GL193485.1 samtools variation 395605 395605 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193485.1 samtools variation 403553 403553 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193485.1 samtools variation 404245 404245 . . . alleles " A G"; frequencies " 0.285234899328859 0.714765100671141"; depth 298 ; unknown ; non-synonymous GL193485.1 samtools variation 409125 409125 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193485.1 samtools variation 409223 409223 . . . alleles " A G"; frequencies " 0.264150943396226 0.735849056603774"; depth 53 ; unknown ; N/A GL193485.1 samtools variation 409611 409611 . . . alleles " T A"; frequencies " 0.563953488372093 0.436046511627907"; depth 172 ; unknown ; N/A GL193485.1 samtools variation 410180 410180 . . . alleles " T C"; frequencies " 0.31 0.69"; depth 100 ; unknown ; N/A GL193485.1 samtools variation 411067 411067 . . . alleles " A C"; frequencies " 0.796610169491525 0.203389830508475"; depth 59 ; unknown ; N/A GL193485.1 samtools variation 412170 412170 . . . alleles " A G"; frequencies " 0.390243902439024 0.609756097560976"; depth 41 ; unknown ; N/A GL193485.1 samtools variation 412245 412245 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 40 ; unknown ; N/A GL193485.1 samtools variation 414051 414051 . . . alleles " C T"; frequencies " 0.797752808988764 0.202247191011236"; depth 89 ; unknown ; N/A GL193485.1 samtools variation 420473 420473 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL193485.1 samtools variation 530146 530146 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193485.1 samtools variation 532519 532519 . . . alleles " T G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193485.1 samtools variation 574191 574191 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; non-synonymous GL193485.1 samtools variation 574200 574200 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; non-synonymous GL193486.1 samtools variation 376395 376395 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193486.1 samtools variation 395433 395433 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL193486.1 samtools variation 396689 396689 . . . alleles " G A"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; known ; N/A GL193486.1 samtools variation 483686 483686 . . . alleles " A C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193486.1 samtools variation 485108 485108 . . . alleles " T G"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193486.1 samtools variation 485146 485146 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193486.1 samtools variation 485878 485878 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193486.1 samtools variation 487094 487094 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL193486.1 samtools variation 490071 490071 . . . alleles " T C"; frequencies " 0.436619718309859 0.563380281690141"; depth 71 ; unknown ; N/A GL193486.1 samtools variation 493374 493374 . . . alleles " T A"; frequencies " 0.777777777777778 0.222222222222222"; depth 135 ; unknown ; N/A GL193486.1 samtools variation 493695 493695 . . . alleles " G T"; frequencies " 0.73728813559322 0.26271186440678"; depth 118 ; unknown ; N/A GL193486.1 samtools variation 495224 495224 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193486.1 samtools variation 497303 497303 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL193486.1 samtools variation 497999 497999 . . . alleles " A C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193486.1 samtools variation 498088 498088 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL193486.1 samtools variation 498918 498918 . . . alleles " C A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193486.1 samtools variation 498983 498983 . . . alleles " A G"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193486.1 samtools variation 499412 499412 . . . alleles " G T"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; known ; non-synonymous GL193486.1 samtools variation 499581 499581 . . . alleles " G T"; frequencies " 0.392156862745098 0.607843137254902"; depth 51 ; unknown ; N/A GL193486.1 samtools variation 499646 499646 . . . alleles " C T"; frequencies " 0.347826086956522 0.652173913043478"; depth 46 ; unknown ; N/A GL193486.1 samtools variation 499858 499858 . . . alleles " A C"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL193486.1 samtools variation 501316 501316 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL193486.1 samtools variation 501532 501532 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193486.1 samtools variation 501601 501601 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL193486.1 samtools variation 502881 502881 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193486.1 samtools variation 503153 503153 . . . alleles " G A"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL193486.1 samtools variation 535735 535735 . . . alleles " A C"; frequencies " 0.486486486486487 0.513513513513513"; depth 37 ; unknown ; synonymous GL193486.1 samtools variation 589279 589279 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL193486.1 samtools variation 591928 591928 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193486.1 samtools variation 592260 592260 . . . alleles " G A"; frequencies " 0.798295454545455 0.201704545454545"; depth 352 ; unknown ; N/A GL193486.1 samtools variation 592350 592350 . . . alleles " A G"; frequencies " 0.535580524344569 0.464419475655431"; depth 267 ; known ; N/A GL193486.1 samtools variation 617553 617553 . . . alleles " T G"; frequencies " 0.69683257918552 0.30316742081448"; depth 442 ; unknown ; N/A GL193486.1 samtools variation 617757 617757 . . . alleles " G A"; frequencies " 0.623471882640587 0.376528117359413"; depth 818 ; unknown ; synonymous GL193486.1 samtools variation 619748 619748 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 288 ; unknown ; synonymous GL193486.1 samtools variation 631529 631529 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193486.1 samtools variation 638688 638688 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL193487.1 samtools variation 138937 138937 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL193487.1 samtools variation 141380 141380 . . . alleles " G A"; frequencies " 0.475247524752475 0.524752475247525"; depth 101 ; known ; N/A GL193487.1 samtools variation 148036 148036 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193487.1 samtools variation 149716 149716 . . . alleles " C T"; frequencies " 0.590286425902864 0.409713574097136"; depth 803 ; known ; synonymous GL193487.1 samtools variation 151675 151675 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193487.1 samtools variation 154885 154885 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 24 ; known ; N/A GL193487.1 samtools variation 161482 161482 . . . alleles " C T"; frequencies " 0.259259259259259 0.740740740740741"; depth 27 ; unknown ; N/A GL193487.1 samtools variation 168139 168139 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193487.1 samtools variation 169179 169179 . . . alleles " G A"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL193487.1 samtools variation 174704 174704 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193487.1 samtools variation 286104 286104 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193487.1 samtools variation 341847 341847 . . . alleles " C A"; frequencies " 0.774193548387097 0.225806451612903"; depth 62 ; unknown ; synonymous GL193487.1 samtools variation 430204 430204 . . . alleles " G A"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; unknown ; N/A GL193489.1 samtools variation 25221 25221 . . . alleles " G A"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL193489.1 samtools variation 25495 25495 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 24 ; known ; N/A GL193489.1 samtools variation 39891 39891 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL193489.1 samtools variation 156977 156977 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193489.1 samtools variation 161064 161064 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; synonymous GL193489.1 samtools variation 162535 162535 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; synonymous GL193489.1 samtools variation 343548 343548 . . . alleles " A G"; frequencies " 0.659574468085106 0.340425531914894"; depth 94 ; unknown ; synonymous GL193489.1 samtools variation 386115 386115 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193489.1 samtools variation 432766 432766 . . . alleles " A G"; frequencies " 0.542056074766355 0.457943925233645"; depth 107 ; known ; synonymous GL193489.1 samtools variation 437751 437751 . . . alleles " C G"; frequencies " 0.634615384615385 0.365384615384615"; depth 52 ; unknown ; N/A GL193489.1 samtools variation 437754 437754 . . . alleles " G A"; frequencies " 0.634615384615385 0.365384615384615"; depth 52 ; unknown ; N/A GL193489.1 samtools variation 440416 440416 . . . alleles " A G"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL193497.1 samtools variation 3172 3172 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL193497.1 samtools variation 18111 18111 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193497.1 samtools variation 149628 149628 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193497.1 samtools variation 150912 150912 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL193497.1 samtools variation 151137 151137 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193497.1 samtools variation 153323 153323 . . . alleles " T C"; frequencies " 0.62109375 0.37890625"; depth 256 ; known ; N/A GL193497.1 samtools variation 158538 158538 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; known ; N/A GL193497.1 samtools variation 166348 166348 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193497.1 samtools variation 169108 169108 . . . alleles " C T"; frequencies " 0.774436090225564 0.225563909774436"; depth 133 ; unknown ; N/A GL193497.1 samtools variation 169292 169292 . . . alleles " A G"; frequencies " 0.729166666666667 0.270833333333333"; depth 96 ; unknown ; N/A GL193497.1 samtools variation 169630 169630 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 56 ; known ; N/A GL193497.1 samtools variation 170543 170543 . . . alleles " G A"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; N/A GL193497.1 samtools variation 171024 171024 . . . alleles " C T"; frequencies " 0.742424242424242 0.257575757575758"; depth 132 ; unknown ; N/A GL193497.1 samtools variation 175508 175508 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193497.1 samtools variation 189574 189574 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193497.1 samtools variation 239017 239017 . . . alleles " G C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL193497.1 samtools variation 245526 245526 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193497.1 samtools variation 262545 262545 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193497.1 samtools variation 268131 268131 . . . alleles " T G"; frequencies " 0.384615384615385 0.615384615384615"; depth 39 ; known ; N/A GL193497.1 samtools variation 362827 362827 . . . alleles " G C"; frequencies " 0.629032258064516 0.370967741935484"; depth 62 ; known ; N/A GL193497.1 samtools variation 368095 368095 . . . alleles " T G"; frequencies " 0.277777777777778 0.722222222222222"; depth 36 ; known ; N/A GL193497.1 samtools variation 377913 377913 . . . alleles " A T"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL193497.1 samtools variation 380809 380809 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193497.1 samtools variation 380836 380836 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193497.1 samtools variation 397708 397708 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193497.1 samtools variation 398555 398555 . . . alleles " C T"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; known ; N/A GL193497.1 samtools variation 398573 398573 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; known ; N/A GL193497.1 samtools variation 401634 401634 . . . alleles " T A"; frequencies " 0.589473684210526 0.410526315789474"; depth 95 ; known ; N/A GL193497.1 samtools variation 413691 413691 . . . alleles " G C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193497.1 samtools variation 418859 418859 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193497.1 samtools variation 426189 426189 . . . alleles " A C"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL193497.1 samtools variation 426377 426377 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193497.1 samtools variation 443513 443513 . . . alleles " A G"; frequencies " 0.450980392156863 0.549019607843137"; depth 51 ; known ; N/A GL193497.1 samtools variation 445608 445608 . . . alleles " G C"; frequencies " 0.764705882352941 0.235294117647059"; depth 68 ; unknown ; N/A GL193497.1 samtools variation 446212 446212 . . . alleles " T C"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; known ; N/A GL193497.1 samtools variation 446245 446245 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL193497.1 samtools variation 446921 446921 . . . alleles " A C"; frequencies " 0.461538461538462 0.384615384615385"; depth 52 ; known ; N/A GL193497.1 samtools variation 447846 447846 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL193497.1 samtools variation 448023 448023 . . . alleles " T C"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; known ; N/A GL193497.1 samtools variation 448872 448872 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL193497.1 samtools variation 448880 448880 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL193497.1 samtools variation 449373 449373 . . . alleles " A T"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; known ; N/A GL193497.1 samtools variation 450505 450505 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193497.1 samtools variation 450520 450520 . . . alleles " C T"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; known ; N/A GL193497.1 samtools variation 451201 451201 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL193497.1 samtools variation 451406 451406 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL193497.1 samtools variation 452518 452518 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193497.1 samtools variation 460687 460687 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193497.1 samtools variation 460879 460879 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193497.1 samtools variation 461329 461329 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193497.1 samtools variation 463202 463202 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL193497.1 samtools variation 472512 472512 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193497.1 samtools variation 488348 488348 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL193497.1 samtools variation 488357 488357 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; known ; N/A GL193497.1 samtools variation 491963 491963 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193497.1 samtools variation 493420 493420 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL193497.1 samtools variation 494100 494100 . . . alleles " G T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL193497.1 samtools variation 496305 496305 . . . alleles " T A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL193497.1 samtools variation 501339 501339 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193497.1 samtools variation 509559 509559 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL193497.1 samtools variation 511195 511195 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193497.1 samtools variation 514017 514017 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193497.1 samtools variation 517246 517246 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL193497.1 samtools variation 517247 517247 . . . alleles " G C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL193497.1 samtools variation 529746 529746 . . . alleles " A G"; frequencies " 0.460674157303371 0.539325842696629"; depth 89 ; known ; synonymous GL193497.1 samtools variation 535181 535181 . . . alleles " A C"; frequencies " 0.579545454545455 0.420454545454545"; depth 88 ; unknown ; synonymous GL193499.1 samtools variation 31129 31129 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193499.1 samtools variation 96343 96343 . . . alleles " A T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193499.1 samtools variation 106342 106342 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL193499.1 samtools variation 177996 177996 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193499.1 samtools variation 235869 235869 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193499.1 samtools variation 349463 349463 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL193499.1 samtools variation 349505 349505 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 35 ; unknown ; N/A GL193499.1 samtools variation 349573 349573 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193499.1 samtools variation 349660 349660 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193499.1 samtools variation 349690 349690 . . . alleles " T A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193499.1 samtools variation 349841 349841 . . . alleles " G A"; frequencies " 0.7375 0.2625"; depth 80 ; unknown ; N/A GL193499.1 samtools variation 349927 349927 . . . alleles " A G"; frequencies " 0.646341463414634 0.353658536585366"; depth 82 ; unknown ; N/A GL193499.1 samtools variation 350240 350240 . . . alleles " T C"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; N/A GL193499.1 samtools variation 554913 554913 . . . alleles " A G"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL193499.1 samtools variation 555273 555273 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 75 ; unknown ; N/A GL193499.1 samtools variation 555413 555413 . . . alleles " A C"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL193500.1 samtools variation 303762 303762 . . . alleles " G A"; frequencies " 0.325688073394495 0.674311926605505"; depth 218 ; known ; N/A GL193501.1 samtools variation 192569 192569 . . . alleles " G A"; frequencies " 0.215686274509804 0.784313725490196"; depth 51 ; unknown ; synonymous GL193501.1 samtools variation 221142 221142 . . . alleles " G A"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL193501.1 samtools variation 306917 306917 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; synonymous GL193502.1 samtools variation 17557 17557 . . . alleles " T C"; frequencies " 0.794788273615635 0.205211726384365"; depth 307 ; known ; N/A GL193502.1 samtools variation 18186 18186 . . . alleles " C T"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; known ; N/A GL193502.1 samtools variation 19138 19138 . . . alleles " A G"; frequencies " 0.422222222222222 0.577777777777778"; depth 45 ; known ; N/A GL193502.1 samtools variation 20259 20259 . . . alleles " G A"; frequencies " 0.768166089965398 0.231833910034602"; depth 289 ; known ; synonymous GL193502.1 samtools variation 21423 21423 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; known ; N/A GL193502.1 samtools variation 26138 26138 . . . alleles " G A"; frequencies " 0.218430034129693 0.781569965870307"; depth 293 ; known ; synonymous GL193502.1 samtools variation 26588 26588 . . . alleles " C T"; frequencies " 0.591150442477876 0.408849557522124"; depth 565 ; known ; synonymous GL193502.1 samtools variation 26725 26725 . . . alleles " C G"; frequencies " 0.59349593495935 0.40650406504065"; depth 246 ; known ; non-synonymous GL193502.1 samtools variation 28180 28180 . . . alleles " T C"; frequencies " 0.412621359223301 0.587378640776699"; depth 412 ; known ; non-synonymous GL193502.1 samtools variation 29567 29567 . . . alleles " A G"; frequencies " 0.366666666666667 0.633333333333333"; depth 330 ; known ; synonymous GL193502.1 samtools variation 33223 33223 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193502.1 samtools variation 38821 38821 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; known ; N/A GL193502.1 samtools variation 44261 44261 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193502.1 samtools variation 44688 44688 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; known ; N/A GL193502.1 samtools variation 44968 44968 . . . alleles " G T"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; N/A GL193502.1 samtools variation 89668 89668 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193502.1 samtools variation 118321 118321 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193502.1 samtools variation 220124 220124 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193502.1 samtools variation 221949 221949 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193502.1 samtools variation 240661 240661 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL193502.1 samtools variation 241643 241643 . . . alleles " G A"; frequencies " 0.626262626262626 0.373737373737374"; depth 99 ; unknown ; N/A GL193502.1 samtools variation 242198 242198 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193502.1 samtools variation 243059 243059 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL193502.1 samtools variation 244403 244403 . . . alleles " T C"; frequencies " 0.279487179487179 0.720512820512821"; depth 390 ; known ; synonymous GL193502.1 samtools variation 244584 244584 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 117 ; known ; N/A GL193502.1 samtools variation 321316 321316 . . . alleles " G A"; frequencies " 0.445945945945946 0.554054054054054"; depth 148 ; known ; N/A GL193502.1 samtools variation 341252 341252 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193502.1 samtools variation 348578 348578 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 90 ; unknown ; N/A GL193502.1 samtools variation 348728 348728 . . . alleles " C A"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; unknown ; N/A GL193502.1 samtools variation 348965 348965 . . . alleles " C T"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; known ; N/A GL193502.1 samtools variation 349996 349996 . . . alleles " G A"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; synonymous GL193502.1 samtools variation 352186 352186 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193502.1 samtools variation 354457 354457 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193502.1 samtools variation 354460 354460 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193502.1 samtools variation 357594 357594 . . . alleles " A T"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; known ; N/A GL193502.1 samtools variation 357670 357670 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193502.1 samtools variation 374271 374271 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; synonymous GL193502.1 samtools variation 405785 405785 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; synonymous GL193502.1 samtools variation 498566 498566 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL193502.1 samtools variation 501405 501405 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 54 ; known ; N/A GL193502.1 samtools variation 502549 502549 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL193502.1 samtools variation 503430 503430 . . . alleles " T A"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; known ; N/A GL193502.1 samtools variation 503831 503831 . . . alleles " T A"; frequencies " 0.476190476190476 0.523809523809524"; depth 42 ; known ; N/A GL193502.1 samtools variation 504819 504819 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193502.1 samtools variation 504909 504909 . . . alleles " T C"; frequencies " 0.707547169811321 0.292452830188679"; depth 530 ; unknown ; synonymous GL193502.1 samtools variation 509890 509890 . . . alleles " T C"; frequencies " 0.223880597014925 0.776119402985075"; depth 67 ; known ; N/A GL193502.1 samtools variation 510105 510105 . . . alleles " C T"; frequencies " 0.763888888888889 0.236111111111111"; depth 72 ; unknown ; N/A GL193502.1 samtools variation 510702 510702 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; N/A GL193502.1 samtools variation 548790 548790 . . . alleles " G A"; frequencies " 0.794642857142857 0.205357142857143"; depth 112 ; unknown ; synonymous GL193502.1 samtools variation 550792 550792 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 76 ; known ; N/A GL193502.1 samtools variation 556525 556525 . . . alleles " G A"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; known ; N/A GL193502.1 samtools variation 568644 568644 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193502.1 samtools variation 581785 581785 . . . alleles " A C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193503.1 samtools variation 21727 21727 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193503.1 samtools variation 21757 21757 . . . alleles " A G"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193503.1 samtools variation 21787 21787 . . . alleles " A G"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL193503.1 samtools variation 21817 21817 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL193504.1 samtools variation 182786 182786 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL193504.1 samtools variation 482336 482336 . . . alleles " A G"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; known ; N/A GL193504.1 samtools variation 483625 483625 . . . alleles " G T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193504.1 samtools variation 485916 485916 . . . alleles " G A"; frequencies " 0.59375 0.40625"; depth 32 ; known ; N/A GL193504.1 samtools variation 521210 521210 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193504.1 samtools variation 530086 530086 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193504.1 samtools variation 586613 586613 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL193504.1 samtools variation 587680 587680 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193506.1 samtools variation 125535 125535 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193510.1 samtools variation 219964 219964 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 54 ; unknown ; N/A GL193510.1 samtools variation 221355 221355 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 45 ; known ; N/A GL193510.1 samtools variation 222102 222102 . . . alleles " A G"; frequencies " 0.665 0.335"; depth 200 ; known ; N/A GL193510.1 samtools variation 222124 222124 . . . alleles " C G"; frequencies " 0.647435897435897 0.352564102564103"; depth 156 ; known ; N/A GL193510.1 samtools variation 225220 225220 . . . alleles " G A"; frequencies " 0.710526315789474 0.289473684210526"; depth 228 ; known ; N/A GL193510.1 samtools variation 225261 225261 . . . alleles " G C"; frequencies " 0.784232365145228 0.215767634854772"; depth 241 ; known ; N/A GL193510.1 samtools variation 295798 295798 . . . alleles " C A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193510.1 samtools variation 306520 306520 . . . alleles " A G"; frequencies " 0.359649122807018 0.640350877192982"; depth 114 ; known ; non-synonymous GL193510.1 samtools variation 307743 307743 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 88 ; known ; N/A GL193510.1 samtools variation 314907 314907 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; synonymous GL193510.1 samtools variation 320868 320868 . . . alleles " T C"; frequencies " 0.656716417910448 0.343283582089552"; depth 67 ; known ; N/A GL193510.1 samtools variation 321668 321668 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193510.1 samtools variation 321998 321998 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL193510.1 samtools variation 322228 322228 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL193510.1 samtools variation 322511 322511 . . . alleles " G T"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL193510.1 samtools variation 323737 323737 . . . alleles " A C"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL193510.1 samtools variation 327043 327043 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL193516.1 samtools variation 106374 106374 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; non-synonymous GL193516.1 samtools variation 313259 313259 . . . alleles " C T"; frequencies " 0.725 0.275"; depth 40 ; unknown ; synonymous GL193518.1 samtools variation 311649 311649 . . . alleles " G C"; frequencies " 0.744075829383886 0.255924170616114"; depth 211 ; unknown ; synonymous GL193518.1 samtools variation 405461 405461 . . . alleles " A G"; frequencies " 0.302158273381295 0.697841726618705"; depth 139 ; known ; N/A GL193518.1 samtools variation 405468 405468 . . . alleles " G A"; frequencies " 0.774725274725275 0.225274725274725"; depth 182 ; known ; N/A GL193518.1 samtools variation 406649 406649 . . . alleles " T C"; frequencies " 0.227272727272727 0.772727272727273"; depth 88 ; known ; N/A GL193518.1 samtools variation 410034 410034 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL193518.1 samtools variation 411073 411073 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; known ; N/A GL193518.1 samtools variation 411185 411185 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193518.1 samtools variation 411637 411637 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193518.1 samtools variation 412716 412716 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 24 ; known ; N/A GL193518.1 samtools variation 462421 462421 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 39 ; unknown ; N/A GL193518.1 samtools variation 462462 462462 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL193518.1 samtools variation 463622 463622 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193518.1 samtools variation 476436 476436 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL193518.1 samtools variation 478741 478741 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193518.1 samtools variation 480207 480207 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193519.1 samtools variation 26361 26361 . . . alleles " A G"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL193519.1 samtools variation 28327 28327 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; synonymous GL193519.1 samtools variation 28528 28528 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; synonymous GL193519.1 samtools variation 28606 28606 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; synonymous GL193521.1 samtools variation 17532 17532 . . . alleles " A G"; frequencies " 0.689655172413793 0.310344827586207"; depth 58 ; known ; N/A GL193521.1 samtools variation 17567 17567 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 44 ; known ; N/A GL193521.1 samtools variation 24012 24012 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL193521.1 samtools variation 24238 24238 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193521.1 samtools variation 103752 103752 . . . alleles " A G"; frequencies " 0.730769230769231 0.269230769230769"; depth 52 ; unknown ; N/A GL193521.1 samtools variation 198433 198433 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193521.1 samtools variation 200761 200761 . . . alleles " G T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193521.1 samtools variation 202566 202566 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL193521.1 samtools variation 203607 203607 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL193521.1 samtools variation 204498 204498 . . . alleles " G C"; frequencies " 0.543859649122807 0.456140350877193"; depth 57 ; unknown ; N/A GL193527.1 samtools variation 12404 12404 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193527.1 samtools variation 69170 69170 . . . alleles " C T"; frequencies " 0.627906976744186 0.372093023255814"; depth 43 ; unknown ; N/A GL193527.1 samtools variation 154396 154396 . . . alleles " A C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL193527.1 samtools variation 154692 154692 . . . alleles " C A"; frequencies " 0.294117647058824 0.705882352941177"; depth 34 ; unknown ; N/A GL193527.1 samtools variation 159794 159794 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193527.1 samtools variation 198374 198374 . . . alleles " C T"; frequencies " 0.30188679245283 0.69811320754717"; depth 53 ; known ; N/A GL193527.1 samtools variation 239541 239541 . . . alleles " A G"; frequencies " 0.313609467455621 0.686390532544379"; depth 169 ; known ; synonymous GL193527.1 samtools variation 354402 354402 . . . alleles " A G"; frequencies " 0.26984126984127 0.73015873015873"; depth 63 ; unknown ; N/A GL193527.1 samtools variation 548682 548682 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193527.1 samtools variation 562806 562806 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; synonymous GL193527.1 samtools variation 562833 562833 . . . alleles " G A"; frequencies " 0.786666666666667 0.2"; depth 75 ; known ; synonymous GL193527.1 samtools variation 563756 563756 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 102 ; known ; N/A GL193527.1 samtools variation 564454 564454 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193527.1 samtools variation 572290 572290 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193527.1 samtools variation 602259 602259 . . . alleles " T C"; frequencies " 0.344086021505376 0.655913978494624"; depth 186 ; known ; synonymous GL193527.1 samtools variation 605263 605263 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL193527.1 samtools variation 611022 611022 . . . alleles " C G"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; unknown ; N/A GL193528.1 samtools variation 20678 20678 . . . alleles " C T"; frequencies " 0.3125 0.6875"; depth 16 ; known ; synonymous GL193528.1 samtools variation 24372 24372 . . . alleles " A C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; non-synonymous GL193529.1 samtools variation 94933 94933 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193529.1 samtools variation 110504 110504 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL193529.1 samtools variation 152152 152152 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL193529.1 samtools variation 305692 305692 . . . alleles " G A"; frequencies " 0.532934131736527 0.467065868263473"; depth 334 ; unknown ; non-synonymous GL193529.1 samtools variation 318516 318516 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL193529.1 samtools variation 319251 319251 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL193529.1 samtools variation 322547 322547 . . . alleles " T G"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL193529.1 samtools variation 324445 324445 . . . alleles " C T"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL193529.1 samtools variation 325116 325116 . . . alleles " A T"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL193529.1 samtools variation 325577 325577 . . . alleles " G C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193529.1 samtools variation 325800 325800 . . . alleles " C G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL193530.1 samtools variation 63284 63284 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193531.1 samtools variation 74727 74727 . . . alleles " C T"; frequencies " 0.607476635514019 0.392523364485981"; depth 107 ; known ; non-synonymous GL193531.1 samtools variation 100549 100549 . . . alleles " A G"; frequencies " 0.547619047619048 0.452380952380952"; depth 42 ; unknown ; N/A GL193534.1 samtools variation 440652 440652 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; known ; synonymous GL193534.1 samtools variation 446208 446208 . . . alleles " C T"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL193534.1 samtools variation 447059 447059 . . . alleles " A G"; frequencies " 0.653846153846154 0.346153846153846"; depth 156 ; known ; N/A GL193534.1 samtools variation 452657 452657 . . . alleles " A G"; frequencies " 0.253968253968254 0.746031746031746"; depth 63 ; known ; N/A GL193536.1 samtools variation 36259 36259 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 25 ; known ; N/A GL193536.1 samtools variation 72497 72497 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 68 ; unknown ; N/A GL193536.1 samtools variation 73153 73153 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 48 ; unknown ; N/A GL193536.1 samtools variation 73216 73216 . . . alleles " G A"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL193536.1 samtools variation 73467 73467 . . . alleles " T C"; frequencies " 0.47887323943662 0.52112676056338"; depth 71 ; unknown ; non-synonymous GL193536.1 samtools variation 73777 73777 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; non-synonymous GL193536.1 samtools variation 73802 73802 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; synonymous GL193536.1 samtools variation 77372 77372 . . . alleles " A T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193536.1 samtools variation 86541 86541 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL193536.1 samtools variation 101581 101581 . . . alleles " T G"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; synonymous GL193536.1 samtools variation 109673 109673 . . . alleles " A G"; frequencies " 0.765957446808511 0.234042553191489"; depth 47 ; known ; synonymous GL193536.1 samtools variation 115547 115547 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 60 ; known ; synonymous GL193536.1 samtools variation 262019 262019 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193536.1 samtools variation 262028 262028 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193536.1 samtools variation 262778 262778 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193536.1 samtools variation 263278 263278 . . . alleles " C T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL193538.1 samtools variation 59685 59685 . . . alleles " G A"; frequencies " 0.429824561403509 0.570175438596491"; depth 114 ; known ; non-synonymous GL193538.1 samtools variation 72106 72106 . . . alleles " G A"; frequencies " 0.738955823293173 0.261044176706827"; depth 249 ; unknown ; N/A GL193538.1 samtools variation 72742 72742 . . . alleles " C T"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; unknown ; N/A GL193538.1 samtools variation 72808 72808 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 64 ; unknown ; N/A GL193538.1 samtools variation 80166 80166 . . . alleles " C G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193538.1 samtools variation 83384 83384 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193538.1 samtools variation 83686 83686 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193538.1 samtools variation 94224 94224 . . . alleles " C T"; frequencies " 0.742647058823529 0.257352941176471"; depth 136 ; unknown ; synonymous GL193538.1 samtools variation 136785 136785 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193538.1 samtools variation 447027 447027 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193538.1 samtools variation 448946 448946 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193538.1 samtools variation 450250 450250 . . . alleles " C T"; frequencies " 0.744186046511628 0.255813953488372"; depth 43 ; known ; N/A GL193539.1 samtools variation 94713 94713 . . . alleles " G A"; frequencies " 0.53030303030303 0.46969696969697"; depth 66 ; known ; non-synonymous GL193540.1 samtools variation 122599 122599 . . . alleles " T C"; frequencies " 0.433734939759036 0.566265060240964"; depth 83 ; known ; non-synonymous GL193540.1 samtools variation 125144 125144 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 50 ; known ; synonymous GL193540.1 samtools variation 132520 132520 . . . alleles " C T"; frequencies " 0.541176470588235 0.458823529411765"; depth 85 ; known ; synonymous GL193540.1 samtools variation 138094 138094 . . . alleles " A G"; frequencies " 0.306122448979592 0.693877551020408"; depth 49 ; known ; synonymous GL193540.1 samtools variation 142626 142626 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 84 ; known ; synonymous GL193540.1 samtools variation 142982 142982 . . . alleles " T C"; frequencies " 0.322916666666667 0.677083333333333"; depth 96 ; known ; synonymous GL193540.1 samtools variation 147822 147822 . . . alleles " A T"; frequencies " 0.71875 0.28125"; depth 32 ; known ; synonymous GL193540.1 samtools variation 148247 148247 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; synonymous GL193540.1 samtools variation 148274 148274 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; synonymous GL193540.1 samtools variation 148334 148334 . . . alleles " C G"; frequencies " 0.647727272727273 0.352272727272727"; depth 88 ; known ; synonymous GL193540.1 samtools variation 163982 163982 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 24 ; known ; non-synonymous GL193540.1 samtools variation 199280 199280 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193540.1 samtools variation 208679 208679 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; synonymous GL193540.1 samtools variation 217196 217196 . . . alleles " C T"; frequencies " 0.610526315789474 0.389473684210526"; depth 95 ; unknown ; N/A GL193540.1 samtools variation 223353 223353 . . . alleles " A G"; frequencies " 0.207792207792208 0.792207792207792"; depth 77 ; known ; synonymous GL193540.1 samtools variation 223377 223377 . . . alleles " T C"; frequencies " 0.548387096774194 0.451612903225806"; depth 62 ; unknown ; synonymous GL193540.1 samtools variation 228790 228790 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193540.1 samtools variation 231128 231128 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193540.1 samtools variation 231185 231185 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193540.1 samtools variation 231629 231629 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193540.1 samtools variation 232474 232474 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; synonymous GL193540.1 samtools variation 263349 263349 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 40 ; unknown ; synonymous GL193540.1 samtools variation 394475 394475 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193540.1 samtools variation 394612 394612 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL193540.1 samtools variation 395185 395185 . . . alleles " C T"; frequencies " 0.778846153846154 0.221153846153846"; depth 104 ; unknown ; N/A GL193540.1 samtools variation 395289 395289 . . . alleles " A G"; frequencies " 0.440944881889764 0.559055118110236"; depth 127 ; unknown ; N/A GL193540.1 samtools variation 494997 494997 . . . alleles " T A"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193540.1 samtools variation 497077 497077 . . . alleles " G A"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL193540.1 samtools variation 499067 499067 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 45 ; known ; N/A GL193540.1 samtools variation 500051 500051 . . . alleles " T C"; frequencies " 0.612903225806452 0.387096774193548"; depth 93 ; unknown ; N/A GL193540.1 samtools variation 500286 500286 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; synonymous GL193540.1 samtools variation 501925 501925 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; synonymous GL193540.1 samtools variation 502286 502286 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL193540.1 samtools variation 503172 503172 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193540.1 samtools variation 507238 507238 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193540.1 samtools variation 513373 513373 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; known ; synonymous GL193540.1 samtools variation 513882 513882 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193540.1 samtools variation 514910 514910 . . . alleles " G A"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; known ; N/A GL193540.1 samtools variation 515323 515323 . . . alleles " G A"; frequencies " 0.654545454545455 0.345454545454545"; depth 165 ; unknown ; N/A GL193540.1 samtools variation 515673 515673 . . . alleles " T C"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; N/A GL193540.1 samtools variation 516176 516176 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193540.1 samtools variation 516795 516795 . . . alleles " G C"; frequencies " 0.395480225988701 0.604519774011299"; depth 177 ; known ; non-synonymous GL193540.1 samtools variation 532152 532152 . . . alleles " T C"; frequencies " 0.606382978723404 0.393617021276596"; depth 188 ; unknown ; synonymous GL193540.1 samtools variation 538584 538584 . . . alleles " C T"; frequencies " 0.401960784313726 0.598039215686274"; depth 204 ; unknown ; non-synonymous GL193540.1 samtools variation 538603 538603 . . . alleles " G A"; frequencies " 0.529761904761905 0.470238095238095"; depth 168 ; unknown ; synonymous GL193540.1 samtools variation 560152 560152 . . . alleles " T C"; frequencies " 0.270833333333333 0.729166666666667"; depth 96 ; known ; synonymous GL193540.1 samtools variation 583909 583909 . . . alleles " C G"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; known ; N/A GL193540.1 samtools variation 588183 588183 . . . alleles " C T"; frequencies " 0.365671641791045 0.634328358208955"; depth 134 ; known ; N/A GL193542.1 samtools variation 277984 277984 . . . alleles " T G"; frequencies " 0.638709677419355 0.361290322580645"; depth 155 ; unknown ; synonymous GL193542.1 samtools variation 294232 294232 . . . alleles " C T"; frequencies " 0.309734513274336 0.690265486725664"; depth 113 ; known ; synonymous GL193542.1 samtools variation 294879 294879 . . . alleles " C T"; frequencies " 0.670454545454545 0.329545454545455"; depth 176 ; unknown ; N/A GL193542.1 samtools variation 344163 344163 . . . alleles " C T"; frequencies " 0.603351955307263 0.396648044692737"; depth 537 ; unknown ; N/A GL193542.1 samtools variation 344551 344551 . . . alleles " A G"; frequencies " 0.711849957374254 0.287297527706735"; depth 1173 ; unknown ; N/A GL193542.1 samtools variation 344825 344825 . . . alleles " C T"; frequencies " 0.524390243902439 0.475609756097561"; depth 328 ; unknown ; N/A GL193542.1 samtools variation 345058 345058 . . . alleles " T A"; frequencies " 0.633009708737864 0.366990291262136"; depth 515 ; unknown ; N/A GL193542.1 samtools variation 345595 345595 . . . alleles " T G"; frequencies " 0.587301587301587 0.412698412698413"; depth 315 ; unknown ; N/A GL193542.1 samtools variation 345975 345975 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL193542.1 samtools variation 346492 346492 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; N/A GL193542.1 samtools variation 346586 346586 . . . alleles " A G"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL193542.1 samtools variation 346752 346752 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL193542.1 samtools variation 347124 347124 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL193542.1 samtools variation 347135 347135 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL193542.1 samtools variation 347553 347553 . . . alleles " T C"; frequencies " 0.503597122302158 0.496402877697842"; depth 556 ; known ; non-synonymous GL193542.1 samtools variation 351993 351993 . . . alleles " G C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193542.1 samtools variation 352000 352000 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193542.1 samtools variation 352033 352033 . . . alleles " A C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193542.1 samtools variation 352080 352080 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193542.1 samtools variation 352120 352120 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL193542.1 samtools variation 352819 352819 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193542.1 samtools variation 353243 353243 . . . alleles " C T"; frequencies " 0.734299516908213 0.265700483091787"; depth 207 ; unknown ; synonymous GL193542.1 samtools variation 353371 353371 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193542.1 samtools variation 353568 353568 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193542.1 samtools variation 354539 354539 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193542.1 samtools variation 354762 354762 . . . alleles " C A"; frequencies " 0.716599190283401 0.283400809716599"; depth 247 ; unknown ; synonymous GL193542.1 samtools variation 355205 355205 . . . alleles " A G"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; unknown ; N/A GL193542.1 samtools variation 355281 355281 . . . alleles " T C"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL193542.1 samtools variation 355530 355530 . . . alleles " G A"; frequencies " 0.701612903225806 0.298387096774194"; depth 248 ; unknown ; synonymous GL193542.1 samtools variation 355572 355572 . . . alleles " A G"; frequencies " 0.623919308357349 0.376080691642651"; depth 694 ; unknown ; synonymous GL193542.1 samtools variation 355706 355706 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193542.1 samtools variation 356762 356762 . . . alleles " T C"; frequencies " 0.605309734513274 0.394690265486726"; depth 565 ; unknown ; synonymous GL193542.1 samtools variation 358562 358562 . . . alleles " C T"; frequencies " 0.618138424821002 0.381861575178998"; depth 419 ; known ; non-synonymous GL193542.1 samtools variation 358581 358581 . . . alleles " G A"; frequencies " 0.561274509803922 0.438725490196078"; depth 408 ; unknown ; synonymous GL193542.1 samtools variation 358811 358811 . . . alleles " A G"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; unknown ; N/A GL193542.1 samtools variation 358901 358901 . . . alleles " G C"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL193542.1 samtools variation 359229 359229 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193542.1 samtools variation 363736 363736 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193542.1 samtools variation 363968 363968 . . . alleles " A C"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL193542.1 samtools variation 364985 364985 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 34 ; unknown ; N/A GL193542.1 samtools variation 366814 366814 . . . alleles " G A"; frequencies " 0.454819277108434 0.545180722891566"; depth 332 ; known ; non-synonymous GL193542.1 samtools variation 376081 376081 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 238 ; unknown ; synonymous GL193542.1 samtools variation 384052 384052 . . . alleles " A G"; frequencies " 0.577380952380952 0.422619047619048"; depth 168 ; known ; non-synonymous GL193542.1 samtools variation 384103 384103 . . . alleles " C T"; frequencies " 0.3710407239819 0.6289592760181"; depth 221 ; known ; non-synonymous GL193542.1 samtools variation 393794 393794 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 364 ; known ; synonymous GL193544.1 samtools variation 182613 182613 . . . alleles " A C"; frequencies " 0.261111111111111 0.733333333333333"; depth 180 ; unknown ; N/A GL193544.1 samtools variation 183687 183687 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL193544.1 samtools variation 317493 317493 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL193544.1 samtools variation 458585 458585 . . . alleles " C T"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; known ; N/A GL193544.1 samtools variation 458736 458736 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL193544.1 samtools variation 462551 462551 . . . alleles " G A"; frequencies " 0.439024390243902 0.560975609756098"; depth 41 ; known ; non-synonymous GL193544.1 samtools variation 471153 471153 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193544.1 samtools variation 489331 489331 . . . alleles " G A"; frequencies " 0.453125 0.546875"; depth 128 ; known ; synonymous GL193544.1 samtools variation 550137 550137 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 95 ; known ; synonymous GL193544.1 samtools variation 551521 551521 . . . alleles " A C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193544.1 samtools variation 591627 591627 . . . alleles " G C"; frequencies " 0.764227642276423 0.235772357723577"; depth 123 ; known ; synonymous GL193544.1 samtools variation 592099 592099 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; known ; N/A GL193547.1 samtools variation 294303 294303 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193547.1 samtools variation 309958 309958 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 20 ; known ; N/A GL193547.1 samtools variation 310822 310822 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193547.1 samtools variation 311150 311150 . . . alleles " T G"; frequencies " 0.674698795180723 0.325301204819277"; depth 83 ; known ; N/A GL193547.1 samtools variation 311619 311619 . . . alleles " G T"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; known ; N/A GL193547.1 samtools variation 312132 312132 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; known ; N/A GL193547.1 samtools variation 314154 314154 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193547.1 samtools variation 314282 314282 . . . alleles " G C"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL193547.1 samtools variation 314332 314332 . . . alleles " C A"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; N/A GL193547.1 samtools variation 314364 314364 . . . alleles " C A"; frequencies " 0.28 0.72"; depth 25 ; known ; N/A GL193547.1 samtools variation 317560 317560 . . . alleles " C T"; frequencies " 0.735294117647059 0.264705882352941"; depth 68 ; known ; N/A GL193547.1 samtools variation 318155 318155 . . . alleles " C T"; frequencies " 0.245614035087719 0.754385964912281"; depth 114 ; known ; N/A GL193547.1 samtools variation 318161 318161 . . . alleles " T C"; frequencies " 0.298245614035088 0.701754385964912"; depth 114 ; known ; N/A GL193547.1 samtools variation 318751 318751 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193547.1 samtools variation 319047 319047 . . . alleles " A G"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL193547.1 samtools variation 319062 319062 . . . alleles " A C"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; known ; N/A GL193547.1 samtools variation 319499 319499 . . . alleles " G T"; frequencies " 0.209302325581395 0.790697674418605"; depth 43 ; known ; N/A GL193547.1 samtools variation 319811 319811 . . . alleles " A G"; frequencies " 0.626373626373626 0.373626373626374"; depth 91 ; unknown ; N/A GL193547.1 samtools variation 321071 321071 . . . alleles " G A"; frequencies " 0.22463768115942 0.77536231884058"; depth 138 ; known ; N/A GL193547.1 samtools variation 321266 321266 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 124 ; known ; N/A GL193547.1 samtools variation 321327 321327 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 65 ; known ; N/A GL193547.1 samtools variation 321375 321375 . . . alleles " T C"; frequencies " 0.594594594594595 0.405405405405405"; depth 37 ; known ; N/A GL193547.1 samtools variation 322221 322221 . . . alleles " A T"; frequencies " 0.289473684210526 0.710526315789474"; depth 76 ; known ; N/A GL193547.1 samtools variation 322319 322319 . . . alleles " A G"; frequencies " 0.260869565217391 0.739130434782609"; depth 69 ; known ; N/A GL193547.1 samtools variation 322324 322324 . . . alleles " G A"; frequencies " 0.276923076923077 0.723076923076923"; depth 65 ; known ; N/A GL193547.1 samtools variation 324486 324486 . . . alleles " G A"; frequencies " 0.355555555555556 0.644444444444444"; depth 45 ; known ; synonymous GL193547.1 samtools variation 324634 324634 . . . alleles " C T"; frequencies " 0.769911504424779 0.230088495575221"; depth 113 ; unknown ; N/A GL193547.1 samtools variation 327773 327773 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193547.1 samtools variation 332228 332228 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 66 ; unknown ; N/A GL193547.1 samtools variation 332296 332296 . . . alleles " T C"; frequencies " 0.591304347826087 0.408695652173913"; depth 115 ; unknown ; N/A GL193547.1 samtools variation 401120 401120 . . . alleles " G A"; frequencies " 0.664429530201342 0.335570469798658"; depth 149 ; unknown ; synonymous GL193547.1 samtools variation 408814 408814 . . . alleles " A C"; frequencies " 0.468468468468468 0.531531531531532"; depth 111 ; known ; non-synonymous GL193547.1 samtools variation 419717 419717 . . . alleles " G A"; frequencies " 0.759493670886076 0.240506329113924"; depth 237 ; unknown ; non-synonymous GL193547.1 samtools variation 427538 427538 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL193547.1 samtools variation 429304 429304 . . . alleles " T C"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL193547.1 samtools variation 429467 429467 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL193547.1 samtools variation 430826 430826 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193547.1 samtools variation 431953 431953 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 70 ; unknown ; N/A GL193550.1 samtools variation 228846 228846 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; known ; synonymous GL193550.1 samtools variation 237756 237756 . . . alleles " G A"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; known ; N/A GL193550.1 samtools variation 237973 237973 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; known ; synonymous GL193550.1 samtools variation 241252 241252 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 16 ; known ; synonymous GL193550.1 samtools variation 242568 242568 . . . alleles " C G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193550.1 samtools variation 244006 244006 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; synonymous GL193550.1 samtools variation 477588 477588 . . . alleles " A G"; frequencies " 0.553191489361702 0.446808510638298"; depth 47 ; unknown ; synonymous GL193551.1 samtools variation 87312 87312 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193551.1 samtools variation 118196 118196 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; known ; N/A GL193551.1 samtools variation 181136 181136 . . . alleles " G A"; frequencies " 0.657142857142857 0.342857142857143"; depth 35 ; unknown ; synonymous GL193551.1 samtools variation 181492 181492 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 100 ; unknown ; N/A GL193551.1 samtools variation 218625 218625 . . . alleles " C T"; frequencies " 0.365853658536585 0.634146341463415"; depth 41 ; known ; N/A GL193551.1 samtools variation 265480 265480 . . . alleles " G T"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193551.1 samtools variation 266621 266621 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193551.1 samtools variation 296516 296516 . . . alleles " A C"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; known ; N/A GL193551.1 samtools variation 558250 558250 . . . alleles " A G"; frequencies " 0.629787234042553 0.370212765957447"; depth 235 ; unknown ; synonymous GL193551.1 samtools variation 559284 559284 . . . alleles " G A"; frequencies " 0.711111111111111 0.288888888888889"; depth 90 ; known ; synonymous GL193551.1 samtools variation 563222 563222 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193551.1 samtools variation 563715 563715 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193552.1 samtools variation 104807 104807 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193552.1 samtools variation 121343 121343 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193552.1 samtools variation 125964 125964 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; synonymous GL193552.1 samtools variation 135443 135443 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193552.1 samtools variation 201925 201925 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193552.1 samtools variation 202125 202125 . . . alleles " C T"; frequencies " 0.520833333333333 0.479166666666667"; depth 48 ; unknown ; N/A GL193552.1 samtools variation 202598 202598 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193552.1 samtools variation 592722 592722 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; synonymous GL193555.1 samtools variation 10433 10433 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 147 ; unknown ; non-synonymous GL193555.1 samtools variation 15402 15402 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193555.1 samtools variation 20262 20262 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193555.1 samtools variation 20304 20304 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193555.1 samtools variation 21822 21822 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193555.1 samtools variation 21825 21825 . . . alleles " G C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193555.1 samtools variation 22945 22945 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193555.1 samtools variation 22946 22946 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193555.1 samtools variation 31181 31181 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193555.1 samtools variation 31888 31888 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193555.1 samtools variation 60526 60526 . . . alleles " C T"; frequencies " 0.537037037037037 0.462962962962963"; depth 54 ; known ; synonymous GL193555.1 samtools variation 69186 69186 . . . alleles " C A"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL193555.1 samtools variation 69717 69717 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL193555.1 samtools variation 76681 76681 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193555.1 samtools variation 111899 111899 . . . alleles " C T"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL193555.1 samtools variation 112080 112080 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 32 ; unknown ; synonymous GL193555.1 samtools variation 501529 501529 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL193555.1 samtools variation 501559 501559 . . . alleles " A G"; frequencies " 0.755102040816326 0.244897959183673"; depth 49 ; unknown ; N/A GL193555.1 samtools variation 502884 502884 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 25 ; unknown ; synonymous GL193555.1 samtools variation 506563 506563 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; synonymous GL193556.1 samtools variation 270891 270891 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL193556.1 samtools variation 277810 277810 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; synonymous GL193556.1 samtools variation 513746 513746 . . . alleles " G C"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; synonymous GL193556.1 samtools variation 539784 539784 . . . alleles " G A"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; synonymous GL193556.1 samtools variation 575278 575278 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; non-synonymous GL193556.1 samtools variation 575303 575303 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; synonymous GL193556.1 samtools variation 579569 579569 . . . alleles " C T"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL193556.1 samtools variation 584993 584993 . . . alleles " G T"; frequencies " 0.456140350877193 0.543859649122807"; depth 57 ; known ; N/A GL193556.1 samtools variation 585086 585086 . . . alleles " T C"; frequencies " 0.564516129032258 0.435483870967742"; depth 62 ; known ; N/A GL193556.1 samtools variation 585156 585156 . . . alleles " C G"; frequencies " 0.673913043478261 0.326086956521739"; depth 46 ; known ; N/A GL193556.1 samtools variation 588357 588357 . . . alleles " A C"; frequencies " 0.660377358490566 0.339622641509434"; depth 106 ; known ; N/A GL193556.1 samtools variation 588392 588392 . . . alleles " T A"; frequencies " 0.701492537313433 0.298507462686567"; depth 134 ; known ; N/A GL193556.1 samtools variation 589462 589462 . . . alleles " A G"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; known ; N/A GL193556.1 samtools variation 589715 589715 . . . alleles " G C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193556.1 samtools variation 599882 599882 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193557.1 samtools variation 12860 12860 . . . alleles " C G"; frequencies " 0.388888888888889 0.611111111111111"; depth 36 ; unknown ; N/A GL193557.1 samtools variation 56931 56931 . . . alleles " G A"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; known ; N/A GL193557.1 samtools variation 57059 57059 . . . alleles " C T"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL193557.1 samtools variation 189895 189895 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193557.1 samtools variation 229042 229042 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193557.1 samtools variation 235206 235206 . . . alleles " A C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL193557.1 samtools variation 241095 241095 . . . alleles " A T"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL193557.1 samtools variation 241113 241113 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL193557.1 samtools variation 241216 241216 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; unknown ; N/A GL193557.1 samtools variation 241953 241953 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193557.1 samtools variation 242481 242481 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193557.1 samtools variation 243474 243474 . . . alleles " G T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL193557.1 samtools variation 243481 243481 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL193557.1 samtools variation 244148 244148 . . . alleles " A G"; frequencies " 0.342465753424658 0.657534246575342"; depth 73 ; unknown ; N/A GL193557.1 samtools variation 363287 363287 . . . alleles " T C"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; known ; N/A GL193557.1 samtools variation 428540 428540 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; known ; N/A GL193557.1 samtools variation 472086 472086 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193557.1 samtools variation 559726 559726 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193557.1 samtools variation 595220 595220 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193557.1 samtools variation 597074 597074 . . . alleles " G A"; frequencies " 0.756521739130435 0.243478260869565"; depth 345 ; unknown ; N/A GL193557.1 samtools variation 599479 599479 . . . alleles " C T"; frequencies " 0.796747967479675 0.203252032520325"; depth 123 ; unknown ; N/A GL193557.1 samtools variation 600022 600022 . . . alleles " A G"; frequencies " 0.585227272727273 0.414772727272727"; depth 176 ; known ; N/A GL193559.1 samtools variation 3102 3102 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL193559.1 samtools variation 3429 3429 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193559.1 samtools variation 87742 87742 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193559.1 samtools variation 87754 87754 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193559.1 samtools variation 91556 91556 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL193559.1 samtools variation 98701 98701 . . . alleles " T C"; frequencies " 0.506849315068493 0.493150684931507"; depth 73 ; known ; N/A GL193559.1 samtools variation 98814 98814 . . . alleles " T C"; frequencies " 0.236363636363636 0.763636363636364"; depth 55 ; known ; N/A GL193559.1 samtools variation 106518 106518 . . . alleles " A G"; frequencies " 0.530612244897959 0.469387755102041"; depth 98 ; known ; synonymous GL193559.1 samtools variation 107034 107034 . . . alleles " A G"; frequencies " 0.553846153846154 0.446153846153846"; depth 65 ; known ; synonymous GL193559.1 samtools variation 110101 110101 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 56 ; known ; N/A GL193559.1 samtools variation 112856 112856 . . . alleles " G C"; frequencies " 0.444444444444444 0.555555555555556"; depth 45 ; known ; synonymous GL193559.1 samtools variation 113597 113597 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193559.1 samtools variation 117202 117202 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 46 ; unknown ; non-synonymous GL193559.1 samtools variation 119578 119578 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193559.1 samtools variation 119621 119621 . . . alleles " G A"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; N/A GL193559.1 samtools variation 119642 119642 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; known ; N/A GL193559.1 samtools variation 163599 163599 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193559.1 samtools variation 165778 165778 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 26 ; known ; N/A GL193559.1 samtools variation 181459 181459 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193559.1 samtools variation 184064 184064 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; known ; N/A GL193559.1 samtools variation 188889 188889 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193559.1 samtools variation 188935 188935 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL193559.1 samtools variation 197794 197794 . . . alleles " C T"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; known ; N/A GL193559.1 samtools variation 207974 207974 . . . alleles " C T"; frequencies " 0.680412371134021 0.319587628865979"; depth 97 ; unknown ; N/A GL193559.1 samtools variation 209493 209493 . . . alleles " T C"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; unknown ; N/A GL193559.1 samtools variation 210803 210803 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193559.1 samtools variation 215395 215395 . . . alleles " G A"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; known ; N/A GL193559.1 samtools variation 215745 215745 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193559.1 samtools variation 219694 219694 . . . alleles " A G"; frequencies " 0.305369127516779 0.694630872483222"; depth 298 ; known ; synonymous GL193559.1 samtools variation 231599 231599 . . . alleles " C T"; frequencies " 0.337028824833703 0.662971175166297"; depth 451 ; known ; N/A GL193559.1 samtools variation 233407 233407 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL193559.1 samtools variation 235385 235385 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193559.1 samtools variation 236304 236304 . . . alleles " G T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193559.1 samtools variation 239112 239112 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193559.1 samtools variation 240400 240400 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193559.1 samtools variation 244641 244641 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 28 ; known ; N/A GL193559.1 samtools variation 246628 246628 . . . alleles " T G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL193559.1 samtools variation 248352 248352 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193559.1 samtools variation 253749 253749 . . . alleles " C A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193559.1 samtools variation 402871 402871 . . . alleles " A G"; frequencies " 0.415094339622642 0.584905660377358"; depth 53 ; known ; synonymous GL193559.1 samtools variation 595918 595918 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193560.1 samtools variation 13155 13155 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL193560.1 samtools variation 13860 13860 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193560.1 samtools variation 14217 14217 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL193560.1 samtools variation 14336 14336 . . . alleles " G C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193560.1 samtools variation 15698 15698 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193560.1 samtools variation 15903 15903 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193560.1 samtools variation 26204 26204 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193560.1 samtools variation 27042 27042 . . . alleles " C A"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL193560.1 samtools variation 27796 27796 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193560.1 samtools variation 54378 54378 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193560.1 samtools variation 63114 63114 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193560.1 samtools variation 79435 79435 . . . alleles " T G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193560.1 samtools variation 80802 80802 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL193560.1 samtools variation 80856 80856 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL193560.1 samtools variation 81091 81091 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193560.1 samtools variation 81242 81242 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193560.1 samtools variation 82913 82913 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193560.1 samtools variation 84817 84817 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193560.1 samtools variation 84912 84912 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193560.1 samtools variation 85153 85153 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193560.1 samtools variation 85160 85160 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193560.1 samtools variation 85213 85213 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL193560.1 samtools variation 85263 85263 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193560.1 samtools variation 85376 85376 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL193560.1 samtools variation 85419 85419 . . . alleles " G A"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; N/A GL193560.1 samtools variation 85924 85924 . . . alleles " G A"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; known ; N/A GL193560.1 samtools variation 86753 86753 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL193560.1 samtools variation 87238 87238 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL193560.1 samtools variation 87691 87691 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; unknown ; N/A GL193560.1 samtools variation 87716 87716 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL193560.1 samtools variation 88455 88455 . . . alleles " G T"; frequencies " 0.213114754098361 0.786885245901639"; depth 61 ; unknown ; N/A GL193560.1 samtools variation 97140 97140 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193560.1 samtools variation 97910 97910 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193560.1 samtools variation 98364 98364 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193560.1 samtools variation 107634 107634 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193560.1 samtools variation 107673 107673 . . . alleles " C G"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; known ; N/A GL193560.1 samtools variation 107728 107728 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL193560.1 samtools variation 107784 107784 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193560.1 samtools variation 108095 108095 . . . alleles " A T"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL193560.1 samtools variation 108119 108119 . . . alleles " C G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL193560.1 samtools variation 108208 108208 . . . alleles " C T"; frequencies " 0.424242424242424 0.545454545454545"; depth 33 ; unknown ; N/A GL193560.1 samtools variation 108428 108428 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 38 ; unknown ; N/A GL193560.1 samtools variation 108737 108737 . . . alleles " T C"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL193560.1 samtools variation 109635 109635 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL193560.1 samtools variation 224989 224989 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; non-synonymous GL193560.1 samtools variation 248680 248680 . . . alleles " T A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; synonymous GL193560.1 samtools variation 257209 257209 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193560.1 samtools variation 258573 258573 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193560.1 samtools variation 265101 265101 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193560.1 samtools variation 267525 267525 . . . alleles " C A"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; synonymous GL193560.1 samtools variation 302638 302638 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193560.1 samtools variation 315042 315042 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 40 ; known ; synonymous GL193560.1 samtools variation 315097 315097 . . . alleles " G A"; frequencies " 0.34375 0.65625"; depth 32 ; known ; non-synonymous GL193560.1 samtools variation 317159 317159 . . . alleles " G A"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; N/A GL193560.1 samtools variation 318921 318921 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193560.1 samtools variation 321201 321201 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193560.1 samtools variation 321599 321599 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193560.1 samtools variation 323894 323894 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; unknown ; non-synonymous GL193560.1 samtools variation 329660 329660 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 117 ; known ; synonymous GL193560.1 samtools variation 347993 347993 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 34 ; known ; non-synonymous GL193562.1 samtools variation 52625 52625 . . . alleles " G T"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; known ; N/A GL193562.1 samtools variation 52776 52776 . . . alleles " C A"; frequencies " 0.450867052023121 0.549132947976879"; depth 173 ; known ; N/A GL193562.1 samtools variation 85219 85219 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193562.1 samtools variation 196096 196096 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; non-synonymous GL193562.1 samtools variation 402208 402208 . . . alleles " C T"; frequencies " 0.671232876712329 0.328767123287671"; depth 73 ; unknown ; N/A GL193562.1 samtools variation 534013 534013 . . . alleles " G A"; frequencies " 0.672131147540984 0.327868852459016"; depth 122 ; unknown ; non-synonymous GL193564.1 samtools variation 61891 61891 . . . alleles " C G"; frequencies " 0.58695652173913 0.41304347826087"; depth 92 ; unknown ; synonymous GL193564.1 samtools variation 309703 309703 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193564.1 samtools variation 309810 309810 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193564.1 samtools variation 311405 311405 . . . alleles " G T"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL193564.1 samtools variation 311878 311878 . . . alleles " G A"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL193564.1 samtools variation 313133 313133 . . . alleles " C T"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; unknown ; N/A GL193564.1 samtools variation 329182 329182 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL193564.1 samtools variation 331770 331770 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193564.1 samtools variation 333229 333229 . . . alleles " A T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193564.1 samtools variation 352559 352559 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193564.1 samtools variation 373864 373864 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193564.1 samtools variation 397472 397472 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193564.1 samtools variation 536641 536641 . . . alleles " T G"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; known ; N/A GL193565.1 samtools variation 115868 115868 . . . alleles " G A"; frequencies " 0.713592233009709 0.286407766990291"; depth 206 ; unknown ; synonymous GL193565.1 samtools variation 121730 121730 . . . alleles " G C"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; N/A GL193565.1 samtools variation 123766 123766 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193565.1 samtools variation 180490 180490 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; synonymous GL193565.1 samtools variation 182214 182214 . . . alleles " A T"; frequencies " 0.76056338028169 0.23943661971831"; depth 71 ; unknown ; non-synonymous GL193565.1 samtools variation 182215 182215 . . . alleles " T C"; frequencies " 0.76056338028169 0.23943661971831"; depth 71 ; unknown ; synonymous GL193565.1 samtools variation 182541 182541 . . . alleles " C T"; frequencies " 0.688888888888889 0.311111111111111"; depth 45 ; unknown ; non-synonymous GL193565.1 samtools variation 245402 245402 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193565.1 samtools variation 321743 321743 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 52 ; unknown ; N/A GL193567.1 samtools variation 21298 21298 . . . alleles " G A"; frequencies " 0.755102040816326 0.244897959183673"; depth 49 ; unknown ; N/A GL193567.1 samtools variation 202623 202623 . . . alleles " C T"; frequencies " 0.693548387096774 0.306451612903226"; depth 186 ; unknown ; non-synonymous GL193567.1 samtools variation 212532 212532 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193567.1 samtools variation 287662 287662 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193567.1 samtools variation 294688 294688 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; synonymous GL193567.1 samtools variation 409440 409440 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 105 ; known ; N/A GL193567.1 samtools variation 409931 409931 . . . alleles " T C"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL193567.1 samtools variation 410015 410015 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; unknown ; N/A GL193568.1 samtools variation 172019 172019 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193568.1 samtools variation 172669 172669 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193568.1 samtools variation 246276 246276 . . . alleles " C T"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL193568.1 samtools variation 278475 278475 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193568.1 samtools variation 280888 280888 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193568.1 samtools variation 299575 299575 . . . alleles " C T"; frequencies " 0.292682926829268 0.707317073170732"; depth 41 ; unknown ; N/A GL193568.1 samtools variation 299649 299649 . . . alleles " C G"; frequencies " 0.271317829457364 0.728682170542636"; depth 129 ; unknown ; N/A GL193568.1 samtools variation 303607 303607 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL193568.1 samtools variation 303693 303693 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL193568.1 samtools variation 303694 303694 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL193568.1 samtools variation 303967 303967 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193568.1 samtools variation 304231 304231 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL193568.1 samtools variation 304792 304792 . . . alleles " T A"; frequencies " 0.764705882352941 0.235294117647059"; depth 85 ; known ; N/A GL193568.1 samtools variation 305014 305014 . . . alleles " C A"; frequencies " 0.573333333333333 0.426666666666667"; depth 75 ; known ; N/A GL193568.1 samtools variation 305443 305443 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193568.1 samtools variation 359009 359009 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; known ; N/A GL193568.1 samtools variation 365178 365178 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193568.1 samtools variation 367258 367258 . . . alleles " G T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL193568.1 samtools variation 373872 373872 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL193568.1 samtools variation 374254 374254 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193568.1 samtools variation 374398 374398 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193568.1 samtools variation 374703 374703 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193568.1 samtools variation 388152 388152 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193568.1 samtools variation 388214 388214 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193568.1 samtools variation 391984 391984 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193568.1 samtools variation 392188 392188 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 95 ; unknown ; N/A GL193568.1 samtools variation 392257 392257 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 90 ; unknown ; N/A GL193568.1 samtools variation 392314 392314 . . . alleles " G A"; frequencies " 0.457142857142857 0.542857142857143"; depth 70 ; unknown ; N/A GL193568.1 samtools variation 392466 392466 . . . alleles " T A"; frequencies " 0.328502415458937 0.671497584541063"; depth 207 ; unknown ; N/A GL193568.1 samtools variation 392509 392509 . . . alleles " A G"; frequencies " 0.363247863247863 0.636752136752137"; depth 234 ; unknown ; N/A GL193568.1 samtools variation 399113 399113 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL193568.1 samtools variation 416511 416511 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193568.1 samtools variation 418859 418859 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193568.1 samtools variation 422405 422405 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193568.1 samtools variation 423058 423058 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193568.1 samtools variation 424036 424036 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193568.1 samtools variation 424733 424733 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL193568.1 samtools variation 425213 425213 . . . alleles " G T"; frequencies " 0.783382789317507 0.216617210682493"; depth 337 ; unknown ; N/A GL193568.1 samtools variation 425439 425439 . . . alleles " G A"; frequencies " 0.724444444444444 0.275555555555556"; depth 225 ; unknown ; N/A GL193568.1 samtools variation 425731 425731 . . . alleles " A G"; frequencies " 0.725552050473186 0.274447949526814"; depth 317 ; unknown ; N/A GL193568.1 samtools variation 425820 425820 . . . alleles " C G"; frequencies " 0.632231404958678 0.367768595041322"; depth 242 ; unknown ; N/A GL193568.1 samtools variation 426010 426010 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 185 ; unknown ; N/A GL193568.1 samtools variation 426175 426175 . . . alleles " T G"; frequencies " 0.759259259259259 0.240740740740741"; depth 108 ; unknown ; N/A GL193568.1 samtools variation 426193 426193 . . . alleles " T C"; frequencies " 0.754385964912281 0.245614035087719"; depth 114 ; unknown ; N/A GL193568.1 samtools variation 426541 426541 . . . alleles " T C"; frequencies " 0.554621848739496 0.445378151260504"; depth 476 ; unknown ; N/A GL193568.1 samtools variation 426842 426842 . . . alleles " G T"; frequencies " 0.684971098265896 0.315028901734104"; depth 346 ; unknown ; N/A GL193568.1 samtools variation 426856 426856 . . . alleles " G A"; frequencies " 0.474842767295597 0.525157232704403"; depth 318 ; unknown ; N/A GL193568.1 samtools variation 437648 437648 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193569.1 samtools variation 42015 42015 . . . alleles " A G"; frequencies " 0.796414852752881 0.203585147247119"; depth 781 ; unknown ; synonymous GL193569.1 samtools variation 59231 59231 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193569.1 samtools variation 59253 59253 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193569.1 samtools variation 62269 62269 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 44 ; unknown ; N/A GL193569.1 samtools variation 62644 62644 . . . alleles " G C"; frequencies " 0.677083333333333 0.322916666666667"; depth 96 ; unknown ; N/A GL193569.1 samtools variation 62645 62645 . . . alleles " G C"; frequencies " 0.680412371134021 0.319587628865979"; depth 97 ; unknown ; N/A GL193569.1 samtools variation 66706 66706 . . . alleles " G A"; frequencies " 0.672645739910314 0.327354260089686"; depth 223 ; unknown ; N/A GL193569.1 samtools variation 100884 100884 . . . alleles " A G"; frequencies " 0.617021276595745 0.382978723404255"; depth 47 ; unknown ; synonymous GL193569.1 samtools variation 104487 104487 . . . alleles " A G"; frequencies " 0.521739130434783 0.478260869565217"; depth 69 ; unknown ; synonymous GL193569.1 samtools variation 104822 104822 . . . alleles " T C"; frequencies " 0.430379746835443 0.569620253164557"; depth 79 ; unknown ; non-synonymous GL193569.1 samtools variation 107228 107228 . . . alleles " A T"; frequencies " 0.36 0.64"; depth 25 ; unknown ; synonymous GL193569.1 samtools variation 109715 109715 . . . alleles " A T"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; unknown ; synonymous GL193569.1 samtools variation 109718 109718 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; unknown ; synonymous GL193569.1 samtools variation 114345 114345 . . . alleles " G A"; frequencies " 0.41025641025641 0.58974358974359"; depth 78 ; unknown ; synonymous GL193569.1 samtools variation 114669 114669 . . . alleles " C T"; frequencies " 0.416107382550336 0.583892617449664"; depth 149 ; unknown ; synonymous GL193569.1 samtools variation 115274 115274 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 52 ; unknown ; synonymous GL193569.1 samtools variation 115289 115289 . . . alleles " C T"; frequencies " 0.775 0.225"; depth 80 ; unknown ; synonymous GL193569.1 samtools variation 120375 120375 . . . alleles " A G"; frequencies " 0.391304347826087 0.608695652173913"; depth 46 ; unknown ; synonymous GL193569.1 samtools variation 121197 121197 . . . alleles " T G"; frequencies " 0.641509433962264 0.358490566037736"; depth 53 ; unknown ; synonymous GL193569.1 samtools variation 121779 121779 . . . alleles " T G"; frequencies " 0.361111111111111 0.638888888888889"; depth 72 ; unknown ; synonymous GL193569.1 samtools variation 121941 121941 . . . alleles " C T"; frequencies " 0.457831325301205 0.542168674698795"; depth 83 ; unknown ; synonymous GL193569.1 samtools variation 122179 122179 . . . alleles " G A"; frequencies " 0.449275362318841 0.550724637681159"; depth 138 ; unknown ; non-synonymous GL193569.1 samtools variation 123029 123029 . . . alleles " G A"; frequencies " 0.553571428571429 0.446428571428571"; depth 168 ; unknown ; non-synonymous GL193569.1 samtools variation 123031 123031 . . . alleles " G A"; frequencies " 0.575581395348837 0.424418604651163"; depth 172 ; unknown ; synonymous GL193569.1 samtools variation 127236 127236 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193569.1 samtools variation 131329 131329 . . . alleles " C T"; frequencies " 0.734883720930233 0.265116279069767"; depth 215 ; unknown ; N/A GL193569.1 samtools variation 138448 138448 . . . alleles " A T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193569.1 samtools variation 138589 138589 . . . alleles " T G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL193569.1 samtools variation 142932 142932 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193569.1 samtools variation 143073 143073 . . . alleles " G A"; frequencies " 0.464285714285714 0.5"; depth 28 ; unknown ; N/A GL193569.1 samtools variation 143312 143312 . . . alleles " G A"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL193569.1 samtools variation 146343 146343 . . . alleles " C T"; frequencies " 0.503957783641161 0.496042216358839"; depth 379 ; unknown ; N/A GL193569.1 samtools variation 146483 146483 . . . alleles " C A"; frequencies " 0.590361445783133 0.409638554216867"; depth 83 ; unknown ; N/A GL193569.1 samtools variation 191750 191750 . . . alleles " C A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL193569.1 samtools variation 199306 199306 . . . alleles " T C"; frequencies " 0.322493224932249 0.677506775067751"; depth 738 ; unknown ; synonymous GL193569.1 samtools variation 199386 199386 . . . alleles " C G"; frequencies " 0.79467680608365 0.204562737642586"; depth 1315 ; unknown ; N/A GL193569.1 samtools variation 203470 203470 . . . alleles " C A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193569.1 samtools variation 269583 269583 . . . alleles " C T"; frequencies " 0.243243243243243 0.756756756756757"; depth 37 ; known ; N/A GL193569.1 samtools variation 273126 273126 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 36 ; known ; N/A GL193569.1 samtools variation 276110 276110 . . . alleles " T C"; frequencies " 0.728571428571429 0.271428571428571"; depth 210 ; known ; N/A GL193569.1 samtools variation 276426 276426 . . . alleles " T C"; frequencies " 0.787878787878788 0.212121212121212"; depth 66 ; known ; N/A GL193569.1 samtools variation 277384 277384 . . . alleles " T G"; frequencies " 0.221428571428571 0.778571428571429"; depth 140 ; known ; N/A GL193569.1 samtools variation 280098 280098 . . . alleles " C G"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; N/A GL193569.1 samtools variation 320905 320905 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 45 ; known ; non-synonymous GL193569.1 samtools variation 393106 393106 . . . alleles " A G"; frequencies " 0.685185185185185 0.314814814814815"; depth 54 ; unknown ; synonymous GL193570.1 samtools variation 237844 237844 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; non-synonymous GL193570.1 samtools variation 418428 418428 . . . alleles " T A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193570.1 samtools variation 475470 475470 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193570.1 samtools variation 481951 481951 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 52 ; known ; N/A GL193570.1 samtools variation 484516 484516 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193570.1 samtools variation 487214 487214 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193570.1 samtools variation 487443 487443 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193570.1 samtools variation 489592 489592 . . . alleles " A G"; frequencies " 0.477272727272727 0.522727272727273"; depth 44 ; unknown ; N/A GL193570.1 samtools variation 491463 491463 . . . alleles " C G"; frequencies " 0.722222222222222 0.277777777777778"; depth 54 ; unknown ; N/A GL193570.1 samtools variation 493321 493321 . . . alleles " C G"; frequencies " 0.73469387755102 0.26530612244898"; depth 98 ; known ; N/A GL193570.1 samtools variation 497976 497976 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193570.1 samtools variation 565850 565850 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193570.1 samtools variation 593333 593333 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL193570.1 samtools variation 607540 607540 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193570.1 samtools variation 607736 607736 . . . alleles " C T"; frequencies " 0.708860759493671 0.291139240506329"; depth 79 ; unknown ; non-synonymous GL193570.1 samtools variation 609752 609752 . . . alleles " G A"; frequencies " 0.719101123595506 0.280898876404494"; depth 89 ; known ; synonymous GL193570.1 samtools variation 609787 609787 . . . alleles " C A"; frequencies " 0.246376811594203 0.753623188405797"; depth 138 ; known ; non-synonymous GL193570.1 samtools variation 609997 609997 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 60 ; unknown ; non-synonymous GL193570.1 samtools variation 610709 610709 . . . alleles " G A"; frequencies " 0.580459770114943 0.419540229885057"; depth 174 ; unknown ; synonymous GL193570.1 samtools variation 611114 611114 . . . alleles " A G"; frequencies " 0.395437262357414 0.604562737642586"; depth 263 ; known ; synonymous GL193570.1 samtools variation 611219 611219 . . . alleles " T G"; frequencies " 0.530386740331492 0.469613259668508"; depth 362 ; unknown ; non-synonymous GL193570.1 samtools variation 611723 611723 . . . alleles " C T"; frequencies " 0.624277456647399 0.375722543352601"; depth 173 ; unknown ; synonymous GL193571.1 samtools variation 143249 143249 . . . alleles " G C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL193571.1 samtools variation 249327 249327 . . . alleles " A C"; frequencies " 0.675324675324675 0.324675324675325"; depth 77 ; unknown ; synonymous GL193571.1 samtools variation 260124 260124 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL193571.1 samtools variation 260461 260461 . . . alleles " C T"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL193571.1 samtools variation 262070 262070 . . . alleles " T C"; frequencies " 0.292452830188679 0.707547169811321"; depth 106 ; unknown ; N/A GL193571.1 samtools variation 262087 262087 . . . alleles " A G"; frequencies " 0.275862068965517 0.724137931034483"; depth 116 ; unknown ; N/A GL193571.1 samtools variation 262278 262278 . . . alleles " C G"; frequencies " 0.311111111111111 0.688888888888889"; depth 45 ; unknown ; N/A GL193573.1 samtools variation 34063 34063 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193573.1 samtools variation 34651 34651 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193573.1 samtools variation 47480 47480 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193573.1 samtools variation 47523 47523 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193573.1 samtools variation 48541 48541 . . . alleles " C A"; frequencies " 0.758064516129032 0.241935483870968"; depth 62 ; unknown ; synonymous GL193573.1 samtools variation 57266 57266 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193573.1 samtools variation 57711 57711 . . . alleles " G A"; frequencies " 0.691176470588235 0.308823529411765"; depth 68 ; unknown ; N/A GL193573.1 samtools variation 61583 61583 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193573.1 samtools variation 62381 62381 . . . alleles " T C"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL193573.1 samtools variation 62940 62940 . . . alleles " G A"; frequencies " 0.747368421052632 0.252631578947368"; depth 95 ; unknown ; N/A GL193573.1 samtools variation 62990 62990 . . . alleles " G A"; frequencies " 0.709677419354839 0.290322580645161"; depth 62 ; unknown ; N/A GL193576.1 samtools variation 71449 71449 . . . alleles " G A"; frequencies " 0.687116564417178 0.312883435582822"; depth 326 ; unknown ; synonymous GL193576.1 samtools variation 72577 72577 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 32 ; known ; N/A GL193576.1 samtools variation 73800 73800 . . . alleles " C T"; frequencies " 0.731707317073171 0.268292682926829"; depth 82 ; unknown ; N/A GL193576.1 samtools variation 75379 75379 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193576.1 samtools variation 79788 79788 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193576.1 samtools variation 579049 579049 . . . alleles " G A"; frequencies " 0.382165605095541 0.617834394904459"; depth 157 ; unknown ; N/A GL193576.1 samtools variation 579153 579153 . . . alleles " G A"; frequencies " 0.385185185185185 0.614814814814815"; depth 135 ; known ; N/A GL193576.1 samtools variation 579165 579165 . . . alleles " C T"; frequencies " 0.705479452054795 0.294520547945205"; depth 146 ; unknown ; N/A GL193576.1 samtools variation 579837 579837 . . . alleles " G C"; frequencies " 0.353658536585366 0.646341463414634"; depth 82 ; unknown ; N/A GL193576.1 samtools variation 580049 580049 . . . alleles " G A"; frequencies " 0.700819672131147 0.299180327868852"; depth 244 ; unknown ; non-synonymous GL193576.1 samtools variation 599587 599587 . . . alleles " G A"; frequencies " 0.718181818181818 0.281818181818182"; depth 220 ; known ; synonymous GL193576.1 samtools variation 599632 599632 . . . alleles " A G"; frequencies " 0.69620253164557 0.30379746835443"; depth 158 ; known ; synonymous GL193579.1 samtools variation 281677 281677 . . . alleles " T G"; frequencies " 0.672131147540984 0.327868852459016"; depth 61 ; unknown ; N/A GL193579.1 samtools variation 282210 282210 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL193579.1 samtools variation 282983 282983 . . . alleles " G A"; frequencies " 0.515738498789346 0.484261501210654"; depth 413 ; unknown ; non-synonymous GL193579.1 samtools variation 284113 284113 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL193579.1 samtools variation 284552 284552 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; N/A GL193579.1 samtools variation 284655 284655 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193579.1 samtools variation 320452 320452 . . . alleles " G A"; frequencies " 0.793814432989691 0.206185567010309"; depth 679 ; unknown ; N/A GL193579.1 samtools variation 324423 324423 . . . alleles " C A"; frequencies " 0.252173913043478 0.747826086956522"; depth 115 ; unknown ; N/A GL193579.1 samtools variation 331238 331238 . . . alleles " A G"; frequencies " 0.795275590551181 0.204724409448819"; depth 889 ; unknown ; synonymous GL193579.1 samtools variation 331317 331317 . . . alleles " C A"; frequencies " 0.65891472868217 0.341085271317829"; depth 903 ; unknown ; non-synonymous GL193579.1 samtools variation 332298 332298 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193579.1 samtools variation 334866 334866 . . . alleles " T C"; frequencies " 0.715341959334566 0.284658040665434"; depth 541 ; unknown ; non-synonymous GL193579.1 samtools variation 334903 334903 . . . alleles " G A"; frequencies " 0.709233791748527 0.290766208251473"; depth 509 ; unknown ; synonymous GL193579.1 samtools variation 334928 334928 . . . alleles " C A"; frequencies " 0.235714285714286 0.764285714285714"; depth 140 ; unknown ; non-synonymous GL193579.1 samtools variation 335706 335706 . . . alleles " A C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193579.1 samtools variation 340046 340046 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193579.1 samtools variation 341233 341233 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 30 ; unknown ; N/A GL193579.1 samtools variation 341530 341530 . . . alleles " C G"; frequencies " 0.647149460708783 0.352850539291217"; depth 649 ; unknown ; N/A GL193579.1 samtools variation 463275 463275 . . . alleles " T C"; frequencies " 0.288135593220339 0.711864406779661"; depth 59 ; unknown ; synonymous GL193579.1 samtools variation 470135 470135 . . . alleles " T C"; frequencies " 0.568181818181818 0.431818181818182"; depth 44 ; unknown ; synonymous GL193579.1 samtools variation 470172 470172 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; non-synonymous GL193579.1 samtools variation 544233 544233 . . . alleles " A G"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; known ; N/A GL193579.1 samtools variation 544357 544357 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193579.1 samtools variation 547770 547770 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193579.1 samtools variation 549481 549481 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193581.1 samtools variation 316557 316557 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL193581.1 samtools variation 317882 317882 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193581.1 samtools variation 512376 512376 . . . alleles " G A"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL193581.1 samtools variation 512996 512996 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193581.1 samtools variation 530889 530889 . . . alleles " A G"; frequencies " 0.771428571428571 0.228571428571429"; depth 70 ; unknown ; synonymous GL193582.1 samtools variation 31304 31304 . . . alleles " G A"; frequencies " 0.685714285714286 0.314285714285714"; depth 70 ; unknown ; non-synonymous GL193582.1 samtools variation 32553 32553 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193582.1 samtools variation 36027 36027 . . . alleles " C T"; frequencies " 0.630952380952381 0.369047619047619"; depth 84 ; unknown ; synonymous GL193582.1 samtools variation 36567 36567 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193582.1 samtools variation 36580 36580 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193582.1 samtools variation 70078 70078 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193582.1 samtools variation 85998 85998 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193582.1 samtools variation 108157 108157 . . . alleles " A G"; frequencies " 0.24390243902439 0.75609756097561"; depth 41 ; known ; N/A GL193582.1 samtools variation 114223 114223 . . . alleles " C T"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL193582.1 samtools variation 114400 114400 . . . alleles " A C"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; unknown ; N/A GL193582.1 samtools variation 114445 114445 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL193582.1 samtools variation 373980 373980 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; known ; N/A GL193583.1 samtools variation 77345 77345 . . . alleles " A C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193583.1 samtools variation 86042 86042 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193583.1 samtools variation 88556 88556 . . . alleles " C T"; frequencies " 0.645454545454546 0.354545454545455"; depth 110 ; unknown ; N/A GL193583.1 samtools variation 88595 88595 . . . alleles " G A"; frequencies " 0.787037037037037 0.212962962962963"; depth 108 ; unknown ; N/A GL193583.1 samtools variation 89888 89888 . . . alleles " G A"; frequencies " 0.541666666666667 0.458333333333333"; depth 96 ; unknown ; synonymous GL193583.1 samtools variation 91732 91732 . . . alleles " C G"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; unknown ; N/A GL193583.1 samtools variation 93610 93610 . . . alleles " G A"; frequencies " 0.386100386100386 0.613899613899614"; depth 259 ; unknown ; synonymous GL193583.1 samtools variation 95999 95999 . . . alleles " A G"; frequencies " 0.796536796536797 0.203463203463203"; depth 231 ; unknown ; N/A GL193583.1 samtools variation 205056 205056 . . . alleles " G A"; frequencies " 0.636664460622105 0.363335539377895"; depth 1511 ; unknown ; synonymous GL193583.1 samtools variation 245917 245917 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193583.1 samtools variation 249454 249454 . . . alleles " G T"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; synonymous GL193583.1 samtools variation 362666 362666 . . . alleles " G A"; frequencies " 0.725 0.275"; depth 40 ; unknown ; N/A GL193583.1 samtools variation 364165 364165 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193583.1 samtools variation 366030 366030 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 48 ; unknown ; N/A GL193583.1 samtools variation 394468 394468 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; unknown ; N/A GL193583.1 samtools variation 400849 400849 . . . alleles " T C"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; known ; N/A GL193583.1 samtools variation 400999 400999 . . . alleles " G C"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; known ; N/A GL193583.1 samtools variation 432118 432118 . . . alleles " T C"; frequencies " 0.597260273972603 0.402739726027397"; depth 730 ; unknown ; N/A GL193583.1 samtools variation 432743 432743 . . . alleles " C T"; frequencies " 0.224318658280922 0.775681341719078"; depth 477 ; unknown ; N/A GL193583.1 samtools variation 432762 432762 . . . alleles " C T"; frequencies " 0.345238095238095 0.654761904761905"; depth 336 ; known ; N/A GL193583.1 samtools variation 432790 432790 . . . alleles " A G"; frequencies " 0.713947990543735 0.286052009456265"; depth 423 ; unknown ; N/A GL193583.1 samtools variation 432857 432857 . . . alleles " C T"; frequencies " 0.484848484848485 0.515151515151515"; depth 528 ; unknown ; non-synonymous GL193583.1 samtools variation 432912 432912 . . . alleles " C T"; frequencies " 0.698487712665406 0.300567107750473"; depth 1058 ; unknown ; synonymous GL193583.1 samtools variation 435701 435701 . . . alleles " C A"; frequencies " 0.2375 0.7625"; depth 80 ; known ; N/A GL193583.1 samtools variation 437275 437275 . . . alleles " T C"; frequencies " 0.733333333333333 0.233333333333333"; depth 30 ; known ; N/A GL193583.1 samtools variation 440725 440725 . . . alleles " G A"; frequencies " 0.765765765765766 0.234234234234234"; depth 111 ; unknown ; N/A GL193583.1 samtools variation 447556 447556 . . . alleles " G A"; frequencies " 0.542372881355932 0.457627118644068"; depth 59 ; known ; N/A GL193583.1 samtools variation 447824 447824 . . . alleles " G C"; frequencies " 0.260869565217391 0.739130434782609"; depth 161 ; known ; N/A GL193583.1 samtools variation 447862 447862 . . . alleles " G C"; frequencies " 0.285714285714286 0.714285714285714"; depth 84 ; unknown ; N/A GL193583.1 samtools variation 448129 448129 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 60 ; unknown ; N/A GL193583.1 samtools variation 448195 448195 . . . alleles " G A"; frequencies " 0.467741935483871 0.532258064516129"; depth 62 ; unknown ; N/A GL193583.1 samtools variation 448281 448281 . . . alleles " C T"; frequencies " 0.231850117096019 0.768149882903981"; depth 854 ; known ; non-synonymous GL193583.1 samtools variation 448417 448417 . . . alleles " C T"; frequencies " 0.430296377607025 0.569703622392975"; depth 911 ; known ; synonymous GL193583.1 samtools variation 473737 473737 . . . alleles " C T"; frequencies " 0.775 0.225"; depth 40 ; unknown ; N/A GL193583.1 samtools variation 591465 591465 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; synonymous GL193583.1 samtools variation 602996 602996 . . . alleles " A T"; frequencies " 0.607843137254902 0.392156862745098"; depth 51 ; unknown ; N/A GL193583.1 samtools variation 603340 603340 . . . alleles " G A"; frequencies " 0.796948356807512 0.2018779342723"; depth 852 ; known ; N/A GL193583.1 samtools variation 603397 603397 . . . alleles " C G"; frequencies " 0.716399506781751 0.282367447595561"; depth 811 ; unknown ; N/A GL193583.1 samtools variation 604228 604228 . . . alleles " A G"; frequencies " 0.597701149425287 0.402298850574713"; depth 87 ; unknown ; N/A GL193583.1 samtools variation 604495 604495 . . . alleles " C G"; frequencies " 0.419354838709677 0.580645161290323"; depth 93 ; unknown ; N/A GL193583.1 samtools variation 604533 604533 . . . alleles " C G"; frequencies " 0.740157480314961 0.259842519685039"; depth 127 ; unknown ; N/A GL193583.1 samtools variation 604806 604806 . . . alleles " C T"; frequencies " 0.295918367346939 0.704081632653061"; depth 98 ; known ; N/A GL193583.1 samtools variation 605154 605154 . . . alleles " A G"; frequencies " 0.219512195121951 0.772357723577236"; depth 123 ; known ; N/A GL193583.1 samtools variation 605501 605501 . . . alleles " C G"; frequencies " 0.483870967741935 0.516129032258065"; depth 93 ; unknown ; N/A GL193583.1 samtools variation 608603 608603 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 63 ; unknown ; N/A GL193584.1 samtools variation 36920 36920 . . . alleles " G T"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; known ; N/A GL193584.1 samtools variation 38260 38260 . . . alleles " A G"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; known ; N/A GL193584.1 samtools variation 44881 44881 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193584.1 samtools variation 48249 48249 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193584.1 samtools variation 48523 48523 . . . alleles " C T"; frequencies " 0.7289972899729 0.2710027100271"; depth 369 ; known ; synonymous GL193584.1 samtools variation 57714 57714 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193584.1 samtools variation 57957 57957 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 33 ; known ; N/A GL193584.1 samtools variation 59686 59686 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193584.1 samtools variation 60041 60041 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193584.1 samtools variation 60043 60043 . . . alleles " T A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193584.1 samtools variation 60838 60838 . . . alleles " C T"; frequencies " 0.698170731707317 0.301829268292683"; depth 328 ; unknown ; non-synonymous GL193584.1 samtools variation 61232 61232 . . . alleles " C T"; frequencies " 0.390173410404624 0.609826589595376"; depth 346 ; known ; synonymous GL193584.1 samtools variation 62504 62504 . . . alleles " T C"; frequencies " 0.700374531835206 0.299625468164794"; depth 267 ; unknown ; synonymous GL193584.1 samtools variation 62531 62531 . . . alleles " T C"; frequencies " 0.676470588235294 0.323529411764706"; depth 272 ; unknown ; synonymous GL193584.1 samtools variation 62685 62685 . . . alleles " T C"; frequencies " 0.610169491525424 0.389830508474576"; depth 59 ; unknown ; N/A GL193584.1 samtools variation 63790 63790 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL193584.1 samtools variation 72993 72993 . . . alleles " A G"; frequencies " 0.746438746438746 0.253561253561254"; depth 351 ; unknown ; N/A GL193584.1 samtools variation 72996 72996 . . . alleles " G C"; frequencies " 0.741477272727273 0.258522727272727"; depth 352 ; unknown ; N/A GL193584.1 samtools variation 75708 75708 . . . alleles " T C"; frequencies " 0.791970802919708 0.208029197080292"; depth 274 ; unknown ; N/A GL193584.1 samtools variation 183834 183834 . . . alleles " A G"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; known ; N/A GL193584.1 samtools variation 190435 190435 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193584.1 samtools variation 236889 236889 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL193584.1 samtools variation 237222 237222 . . . alleles " C T"; frequencies " 0.497797356828194 0.502202643171806"; depth 2497 ; unknown ; synonymous GL193584.1 samtools variation 237564 237564 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193584.1 samtools variation 238574 238574 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193584.1 samtools variation 244915 244915 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193584.1 samtools variation 244924 244924 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193584.1 samtools variation 247412 247412 . . . alleles " T C"; frequencies " 0.704166666666667 0.295833333333333"; depth 240 ; unknown ; synonymous GL193584.1 samtools variation 247418 247418 . . . alleles " C G"; frequencies " 0.711462450592885 0.288537549407115"; depth 253 ; unknown ; synonymous GL193584.1 samtools variation 255392 255392 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193584.1 samtools variation 257202 257202 . . . alleles " G A"; frequencies " 0.790123456790123 0.209876543209877"; depth 243 ; unknown ; non-synonymous GL193584.1 samtools variation 260542 260542 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 46 ; unknown ; N/A GL193584.1 samtools variation 270052 270052 . . . alleles " A C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193584.1 samtools variation 313606 313606 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193584.1 samtools variation 318169 318169 . . . alleles " C T"; frequencies " 0.654320987654321 0.345679012345679"; depth 81 ; unknown ; N/A GL193584.1 samtools variation 318256 318256 . . . alleles " A C"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL193584.1 samtools variation 319265 319265 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; unknown ; N/A GL193584.1 samtools variation 320041 320041 . . . alleles " T C"; frequencies " 0.766666666666667 0.233333333333333"; depth 60 ; unknown ; N/A GL193584.1 samtools variation 320896 320896 . . . alleles " G A"; frequencies " 0.779874213836478 0.220125786163522"; depth 159 ; unknown ; N/A GL193584.1 samtools variation 321184 321184 . . . alleles " T C"; frequencies " 0.781696428571429 0.218303571428571"; depth 2240 ; unknown ; synonymous GL193584.1 samtools variation 321833 321833 . . . alleles " G A"; frequencies " 0.535714285714286 0.464285714285714"; depth 112 ; unknown ; N/A GL193584.1 samtools variation 322290 322290 . . . alleles " C T"; frequencies " 0.709514170040486 0.290485829959514"; depth 2964 ; unknown ; synonymous GL193584.1 samtools variation 322504 322504 . . . alleles " G C"; frequencies " 0.721393034825871 0.278606965174129"; depth 201 ; unknown ; N/A GL193584.1 samtools variation 322506 322506 . . . alleles " G A"; frequencies " 0.721951219512195 0.278048780487805"; depth 205 ; unknown ; N/A GL193584.1 samtools variation 323275 323275 . . . alleles " G C"; frequencies " 0.799041533546326 0.200638977635783"; depth 3130 ; unknown ; non-synonymous GL193584.1 samtools variation 326406 326406 . . . alleles " A G"; frequencies " 0.644444444444444 0.355555555555556"; depth 135 ; unknown ; N/A GL193584.1 samtools variation 335220 335220 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 35 ; unknown ; synonymous GL193584.1 samtools variation 342587 342587 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193584.1 samtools variation 343754 343754 . . . alleles " C G"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL193584.1 samtools variation 343894 343894 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193584.1 samtools variation 350077 350077 . . . alleles " C T"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; N/A GL193584.1 samtools variation 350900 350900 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193584.1 samtools variation 353599 353599 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193584.1 samtools variation 356699 356699 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193584.1 samtools variation 357088 357088 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193584.1 samtools variation 388932 388932 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193584.1 samtools variation 389137 389137 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL193584.1 samtools variation 391451 391451 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 52 ; unknown ; synonymous GL193584.1 samtools variation 391477 391477 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 52 ; unknown ; synonymous GL193584.1 samtools variation 391738 391738 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL193584.1 samtools variation 392284 392284 . . . alleles " C T"; frequencies " 0.702479338842975 0.297520661157025"; depth 121 ; unknown ; non-synonymous GL193584.1 samtools variation 392403 392403 . . . alleles " A C"; frequencies " 0.302127659574468 0.697872340425532"; depth 235 ; unknown ; non-synonymous GL193584.1 samtools variation 392984 392984 . . . alleles " T C"; frequencies " 0.251162790697674 0.748837209302326"; depth 860 ; unknown ; N/A GL193584.1 samtools variation 393153 393153 . . . alleles " T G"; frequencies " 0.270676691729323 0.729323308270677"; depth 399 ; unknown ; N/A GL193584.1 samtools variation 393168 393168 . . . alleles " G C"; frequencies " 0.327235772357724 0.672764227642276"; depth 492 ; unknown ; N/A GL193584.1 samtools variation 393389 393389 . . . alleles " C T"; frequencies " 0.268714011516315 0.731285988483685"; depth 521 ; unknown ; N/A GL193584.1 samtools variation 393456 393456 . . . alleles " C T"; frequencies " 0.230914231856739 0.769085768143261"; depth 1061 ; unknown ; N/A GL193584.1 samtools variation 393498 393498 . . . alleles " G A"; frequencies " 0.248735244519393 0.751264755480607"; depth 1186 ; unknown ; N/A GL193584.1 samtools variation 393592 393592 . . . alleles " A C"; frequencies " 0.217708333333333 0.782291666666667"; depth 960 ; unknown ; N/A GL193584.1 samtools variation 393993 393993 . . . alleles " C T"; frequencies " 0.244053774560496 0.755946225439504"; depth 967 ; unknown ; N/A GL193584.1 samtools variation 394069 394069 . . . alleles " C T"; frequencies " 0.291708291708292 0.708291708291708"; depth 1001 ; unknown ; N/A GL193584.1 samtools variation 394408 394408 . . . alleles " C T"; frequencies " 0.244635193133047 0.755364806866953"; depth 932 ; unknown ; N/A GL193584.1 samtools variation 394549 394549 . . . alleles " C T"; frequencies " 0.334104046242775 0.665895953757225"; depth 865 ; unknown ; non-synonymous GL193584.1 samtools variation 395582 395582 . . . alleles " T C"; frequencies " 0.768421052631579 0.231578947368421"; depth 570 ; unknown ; synonymous GL193584.1 samtools variation 396027 396027 . . . alleles " C T"; frequencies " 0.204790419161677 0.795209580838323"; depth 835 ; unknown ; N/A GL193584.1 samtools variation 396163 396163 . . . alleles " T G"; frequencies " 0.24807903402854 0.75192096597146"; depth 911 ; unknown ; N/A GL193584.1 samtools variation 396531 396531 . . . alleles " T C"; frequencies " 0.262585034013605 0.737414965986395"; depth 735 ; unknown ; non-synonymous GL193584.1 samtools variation 396971 396971 . . . alleles " C T"; frequencies " 0.26860025220681 0.730138713745271"; depth 793 ; unknown ; synonymous GL193584.1 samtools variation 399824 399824 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193584.1 samtools variation 402759 402759 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL193584.1 samtools variation 403160 403160 . . . alleles " G A"; frequencies " 0.775193798449612 0.224806201550388"; depth 129 ; known ; synonymous GL193584.1 samtools variation 404397 404397 . . . alleles " G A"; frequencies " 0.294736842105263 0.705263157894737"; depth 95 ; known ; N/A GL193584.1 samtools variation 406115 406115 . . . alleles " C T"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL193584.1 samtools variation 406777 406777 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193584.1 samtools variation 440476 440476 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL193584.1 samtools variation 489081 489081 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193584.1 samtools variation 503781 503781 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193584.1 samtools variation 506905 506905 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL193584.1 samtools variation 507126 507126 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL193584.1 samtools variation 508375 508375 . . . alleles " G A"; frequencies " 0.27906976744186 0.720930232558139"; depth 172 ; unknown ; synonymous GL193584.1 samtools variation 511549 511549 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193584.1 samtools variation 511553 511553 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193584.1 samtools variation 511634 511634 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193584.1 samtools variation 514428 514428 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193584.1 samtools variation 526644 526644 . . . alleles " C T"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; synonymous GL193584.1 samtools variation 526941 526941 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 45 ; unknown ; synonymous GL193584.1 samtools variation 529671 529671 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193584.1 samtools variation 531391 531391 . . . alleles " A G"; frequencies " 0.632352941176471 0.367647058823529"; depth 68 ; unknown ; synonymous GL193584.1 samtools variation 533070 533070 . . . alleles " G T"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; non-synonymous GL193584.1 samtools variation 534376 534376 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL193584.1 samtools variation 537881 537881 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193584.1 samtools variation 550329 550329 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; unknown ; N/A GL193584.1 samtools variation 564745 564745 . . . alleles " C T"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; synonymous GL193584.1 samtools variation 566709 566709 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 65 ; known ; N/A GL193584.1 samtools variation 567535 567535 . . . alleles " G T"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL193584.1 samtools variation 568193 568193 . . . alleles " T C"; frequencies " 0.791666666666667 0.208333333333333"; depth 96 ; unknown ; N/A GL193584.1 samtools variation 578564 578564 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL193584.1 samtools variation 581204 581204 . . . alleles " C T"; frequencies " 0.671140939597315 0.328859060402685"; depth 149 ; unknown ; N/A GL193584.1 samtools variation 581956 581956 . . . alleles " G C"; frequencies " 0.621019108280255 0.378980891719745"; depth 314 ; unknown ; N/A GL193584.1 samtools variation 585699 585699 . . . alleles " C T"; frequencies " 0.663900414937759 0.336099585062241"; depth 723 ; unknown ; N/A GL193584.1 samtools variation 586043 586043 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 48 ; unknown ; N/A GL193584.1 samtools variation 586487 586487 . . . alleles " G T"; frequencies " 0.724137931034483 0.275862068965517"; depth 58 ; unknown ; N/A GL193589.1 samtools variation 468731 468731 . . . alleles " A G"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; known ; non-synonymous GL193589.1 samtools variation 494369 494369 . . . alleles " T C"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL193589.1 samtools variation 495045 495045 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL193589.1 samtools variation 496648 496648 . . . alleles " C T"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193589.1 samtools variation 501050 501050 . . . alleles " A G"; frequencies " 0.30327868852459 0.69672131147541"; depth 122 ; unknown ; N/A GL193589.1 samtools variation 501125 501125 . . . alleles " A C"; frequencies " 0.716129032258065 0.283870967741935"; depth 310 ; unknown ; N/A GL193589.1 samtools variation 569342 569342 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193589.1 samtools variation 584322 584322 . . . alleles " G T"; frequencies " 0.388297872340426 0.611702127659574"; depth 188 ; unknown ; N/A GL193589.1 samtools variation 584336 584336 . . . alleles " T C"; frequencies " 0.611650485436893 0.388349514563107"; depth 206 ; known ; N/A GL193589.1 samtools variation 584914 584914 . . . alleles " C T"; frequencies " 0.216284987277354 0.783715012722646"; depth 393 ; unknown ; N/A GL193589.1 samtools variation 584978 584978 . . . alleles " A G"; frequencies " 0.367647058823529 0.632352941176471"; depth 204 ; unknown ; N/A GL193589.1 samtools variation 588261 588261 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193589.1 samtools variation 591321 591321 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193591.1 samtools variation 68708 68708 . . . alleles " T C"; frequencies " 0.44 0.56"; depth 25 ; known ; N/A GL193591.1 samtools variation 117208 117208 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193591.1 samtools variation 117840 117840 . . . alleles " G A"; frequencies " 0.603896103896104 0.396103896103896"; depth 154 ; unknown ; synonymous GL193591.1 samtools variation 125433 125433 . . . alleles " A T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193591.1 samtools variation 140071 140071 . . . alleles " G A"; frequencies " 0.626460767946578 0.373121869782972"; depth 2396 ; known ; synonymous GL193591.1 samtools variation 140456 140456 . . . alleles " T C"; frequencies " 0.594936708860759 0.405063291139241"; depth 79 ; unknown ; N/A GL193591.1 samtools variation 145535 145535 . . . alleles " A G"; frequencies " 0.676923076923077 0.323076923076923"; depth 65 ; unknown ; N/A GL193591.1 samtools variation 161658 161658 . . . alleles " C T"; frequencies " 0.626436781609195 0.373563218390805"; depth 174 ; unknown ; N/A GL193591.1 samtools variation 178579 178579 . . . alleles " C T"; frequencies " 0.614035087719298 0.385964912280702"; depth 171 ; unknown ; N/A GL193591.1 samtools variation 220784 220784 . . . alleles " C T"; frequencies " 0.670588235294118 0.329411764705882"; depth 340 ; known ; N/A GL193591.1 samtools variation 233052 233052 . . . alleles " G A"; frequencies " 0.621052631578947 0.378947368421053"; depth 190 ; unknown ; non-synonymous GL193591.1 samtools variation 324124 324124 . . . alleles " A G"; frequencies " 0.424489795918367 0.575510204081633"; depth 245 ; unknown ; N/A GL193591.1 samtools variation 324150 324150 . . . alleles " A G"; frequencies " 0.691275167785235 0.308724832214765"; depth 149 ; known ; N/A GL193591.1 samtools variation 515673 515673 . . . alleles " C A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; non-synonymous GL193591.1 samtools variation 533929 533929 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193591.1 samtools variation 547491 547491 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; unknown ; N/A GL193591.1 samtools variation 555254 555254 . . . alleles " G T"; frequencies " 0.261904761904762 0.738095238095238"; depth 42 ; unknown ; N/A GL193591.1 samtools variation 555255 555255 . . . alleles " C T"; frequencies " 0.238095238095238 0.761904761904762"; depth 42 ; unknown ; N/A GL193595.1 samtools variation 4320 4320 . . . alleles " A C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL193595.1 samtools variation 5782 5782 . . . alleles " T C"; frequencies " 0.207920792079208 0.792079207920792"; depth 101 ; known ; N/A GL193595.1 samtools variation 5787 5787 . . . alleles " C G"; frequencies " 0.205882352941176 0.794117647058823"; depth 102 ; known ; N/A GL193595.1 samtools variation 6198 6198 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 40 ; known ; N/A GL193595.1 samtools variation 7761 7761 . . . alleles " T C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193595.1 samtools variation 10628 10628 . . . alleles " T C"; frequencies " 0.760869565217391 0.239130434782609"; depth 46 ; known ; N/A GL193595.1 samtools variation 13130 13130 . . . alleles " A G"; frequencies " 0.212121212121212 0.787878787878788"; depth 33 ; known ; N/A GL193595.1 samtools variation 203291 203291 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193598.1 samtools variation 30920 30920 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193598.1 samtools variation 31465 31465 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193598.1 samtools variation 32808 32808 . . . alleles " C T"; frequencies " 0.753424657534247 0.246575342465753"; depth 73 ; unknown ; N/A GL193598.1 samtools variation 32952 32952 . . . alleles " T C"; frequencies " 0.605714285714286 0.394285714285714"; depth 175 ; unknown ; N/A GL193598.1 samtools variation 37073 37073 . . . alleles " C G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL193598.1 samtools variation 37224 37224 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193598.1 samtools variation 39240 39240 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193598.1 samtools variation 68722 68722 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193598.1 samtools variation 93507 93507 . . . alleles " T C"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL193598.1 samtools variation 94982 94982 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL193598.1 samtools variation 95685 95685 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 183 ; unknown ; N/A GL193598.1 samtools variation 116937 116937 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193598.1 samtools variation 119391 119391 . . . alleles " C T"; frequencies " 0.796296296296296 0.203703703703704"; depth 54 ; unknown ; N/A GL193598.1 samtools variation 119582 119582 . . . alleles " C T"; frequencies " 0.623839009287926 0.376160990712074"; depth 646 ; known ; N/A GL193598.1 samtools variation 121182 121182 . . . alleles " T C"; frequencies " 0.372093023255814 0.627906976744186"; depth 43 ; known ; N/A GL193598.1 samtools variation 378853 378853 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193598.1 samtools variation 494630 494630 . . . alleles " T C"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; synonymous GL193598.1 samtools variation 494636 494636 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 32 ; unknown ; synonymous GL193598.1 samtools variation 505794 505794 . . . alleles " C T"; frequencies " 0.743801652892562 0.256198347107438"; depth 121 ; unknown ; synonymous GL193598.1 samtools variation 505890 505890 . . . alleles " C T"; frequencies " 0.74 0.26"; depth 150 ; unknown ; synonymous GL193598.1 samtools variation 510422 510422 . . . alleles " G A"; frequencies " 0.706896551724138 0.293103448275862"; depth 58 ; unknown ; non-synonymous GL193598.1 samtools variation 514609 514609 . . . alleles " G C"; frequencies " 0.6875 0.3125"; depth 48 ; unknown ; N/A GL193602.1 samtools variation 477548 477548 . . . alleles " G A"; frequencies " 0.422764227642276 0.577235772357724"; depth 123 ; unknown ; N/A GL193605.1 samtools variation 99111 99111 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 51 ; unknown ; synonymous GL193605.1 samtools variation 126635 126635 . . . alleles " G A"; frequencies " 0.569444444444444 0.430555555555556"; depth 72 ; unknown ; N/A GL193605.1 samtools variation 127491 127491 . . . alleles " A T"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL193605.1 samtools variation 127748 127748 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 112 ; unknown ; N/A GL193605.1 samtools variation 127868 127868 . . . alleles " C T"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL193605.1 samtools variation 127998 127998 . . . alleles " A G"; frequencies " 0.652173913043478 0.347826086956522"; depth 69 ; unknown ; N/A GL193605.1 samtools variation 128100 128100 . . . alleles " G A"; frequencies " 0.730337078651685 0.269662921348315"; depth 89 ; unknown ; N/A GL193605.1 samtools variation 128443 128443 . . . alleles " G A"; frequencies " 0.66 0.34"; depth 50 ; unknown ; N/A GL193605.1 samtools variation 128949 128949 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; unknown ; N/A GL193605.1 samtools variation 129054 129054 . . . alleles " G A"; frequencies " 0.48936170212766 0.51063829787234"; depth 47 ; unknown ; N/A GL193605.1 samtools variation 129073 129073 . . . alleles " C T"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL193605.1 samtools variation 129099 129099 . . . alleles " C T"; frequencies " 0.74 0.26"; depth 50 ; unknown ; N/A GL193605.1 samtools variation 129407 129407 . . . alleles " G A"; frequencies " 0.215277777777778 0.784722222222222"; depth 144 ; unknown ; N/A GL193605.1 samtools variation 129585 129585 . . . alleles " A G"; frequencies " 0.706521739130435 0.293478260869565"; depth 92 ; unknown ; N/A GL193605.1 samtools variation 130012 130012 . . . alleles " C T"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; N/A GL193605.1 samtools variation 130163 130163 . . . alleles " C T"; frequencies " 0.696969696969697 0.303030303030303"; depth 66 ; unknown ; N/A GL193605.1 samtools variation 130283 130283 . . . alleles " T G"; frequencies " 0.704918032786885 0.295081967213115"; depth 61 ; unknown ; N/A GL193605.1 samtools variation 130625 130625 . . . alleles " C T"; frequencies " 0.61038961038961 0.38961038961039"; depth 77 ; unknown ; N/A GL193605.1 samtools variation 131217 131217 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL193605.1 samtools variation 131334 131334 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193605.1 samtools variation 133137 133137 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193605.1 samtools variation 136811 136811 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193605.1 samtools variation 136880 136880 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193605.1 samtools variation 136948 136948 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193605.1 samtools variation 137900 137900 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193605.1 samtools variation 137917 137917 . . . alleles " G T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193605.1 samtools variation 138029 138029 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193605.1 samtools variation 138696 138696 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL193605.1 samtools variation 139040 139040 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL193605.1 samtools variation 139065 139065 . . . alleles " C T"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL193605.1 samtools variation 139159 139159 . . . alleles " G A"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL193605.1 samtools variation 139163 139163 . . . alleles " A C"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL193605.1 samtools variation 139734 139734 . . . alleles " C A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL193605.1 samtools variation 145613 145613 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193605.1 samtools variation 145788 145788 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193605.1 samtools variation 146228 146228 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193605.1 samtools variation 147111 147111 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193605.1 samtools variation 147146 147146 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193605.1 samtools variation 152215 152215 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193605.1 samtools variation 152899 152899 . . . alleles " A G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL193605.1 samtools variation 152966 152966 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193605.1 samtools variation 153158 153158 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 60 ; unknown ; N/A GL193605.1 samtools variation 153801 153801 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL193605.1 samtools variation 154273 154273 . . . alleles " A G"; frequencies " 0.317460317460317 0.682539682539683"; depth 63 ; unknown ; N/A GL193605.1 samtools variation 154426 154426 . . . alleles " C T"; frequencies " 0.56 0.42"; depth 50 ; unknown ; N/A GL193605.1 samtools variation 154848 154848 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193605.1 samtools variation 155727 155727 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; unknown ; N/A GL193605.1 samtools variation 157106 157106 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL193605.1 samtools variation 158872 158872 . . . alleles " A C"; frequencies " 0.326923076923077 0.673076923076923"; depth 104 ; unknown ; N/A GL193605.1 samtools variation 159580 159580 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 120 ; unknown ; N/A GL193605.1 samtools variation 159610 159610 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 132 ; unknown ; N/A GL193605.1 samtools variation 159651 159651 . . . alleles " C G"; frequencies " 0.787735849056604 0.212264150943396"; depth 212 ; unknown ; N/A GL193605.1 samtools variation 160012 160012 . . . alleles " G A"; frequencies " 0.795620437956204 0.204379562043796"; depth 137 ; unknown ; N/A GL193605.1 samtools variation 161511 161511 . . . alleles " G A"; frequencies " 0.774509803921569 0.225490196078431"; depth 204 ; unknown ; N/A GL193605.1 samtools variation 164015 164015 . . . alleles " T G"; frequencies " 0.25531914893617 0.74468085106383"; depth 94 ; unknown ; N/A GL193605.1 samtools variation 164784 164784 . . . alleles " G A"; frequencies " 0.770174306003873 0.229825693996127"; depth 1549 ; unknown ; synonymous GL193605.1 samtools variation 164973 164973 . . . alleles " C G"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL193605.1 samtools variation 165286 165286 . . . alleles " T C"; frequencies " 0.523333333333333 0.476666666666667"; depth 300 ; unknown ; N/A GL193605.1 samtools variation 165719 165719 . . . alleles " G A"; frequencies " 0.793333333333333 0.206666666666667"; depth 150 ; unknown ; N/A GL193605.1 samtools variation 165867 165867 . . . alleles " C T"; frequencies " 0.509887005649718 0.490112994350282"; depth 3540 ; unknown ; synonymous GL193605.1 samtools variation 166046 166046 . . . alleles " C A"; frequencies " 0.714364793800166 0.285358427899253"; depth 3613 ; unknown ; synonymous GL193605.1 samtools variation 166119 166119 . . . alleles " G A"; frequencies " 0.694476811931951 0.305057096247961"; depth 4291 ; unknown ; N/A GL193605.1 samtools variation 170458 170458 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193605.1 samtools variation 170581 170581 . . . alleles " G T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193605.1 samtools variation 173960 173960 . . . alleles " C T"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL193605.1 samtools variation 183059 183059 . . . alleles " A G"; frequencies " 0.69620253164557 0.30379746835443"; depth 79 ; unknown ; N/A GL193605.1 samtools variation 203854 203854 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL193606.1 samtools variation 223956 223956 . . . alleles " A C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193606.1 samtools variation 243382 243382 . . . alleles " T A"; frequencies " 0.584615384615385 0.415384615384615"; depth 65 ; unknown ; N/A GL193606.1 samtools variation 243608 243608 . . . alleles " A T"; frequencies " 0.614457831325301 0.385542168674699"; depth 83 ; unknown ; N/A GL193606.1 samtools variation 251124 251124 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193606.1 samtools variation 254418 254418 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193606.1 samtools variation 277833 277833 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193606.1 samtools variation 283410 283410 . . . alleles " C T"; frequencies " 0.581151832460733 0.418848167539267"; depth 191 ; unknown ; synonymous GL193606.1 samtools variation 283509 283509 . . . alleles " C A"; frequencies " 0.738589211618257 0.261410788381743"; depth 241 ; unknown ; synonymous GL193606.1 samtools variation 378677 378677 . . . alleles " T C"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; unknown ; N/A GL193608.1 samtools variation 107454 107454 . . . alleles " A C"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; non-synonymous GL193608.1 samtools variation 177654 177654 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193608.1 samtools variation 177719 177719 . . . alleles " T A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193608.1 samtools variation 178330 178330 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 171 ; known ; synonymous GL193608.1 samtools variation 185142 185142 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; known ; N/A GL193608.1 samtools variation 187671 187671 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193608.1 samtools variation 195325 195325 . . . alleles " T G"; frequencies " 0.469026548672566 0.530973451327434"; depth 113 ; unknown ; N/A GL193608.1 samtools variation 226010 226010 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193608.1 samtools variation 229927 229927 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193608.1 samtools variation 236200 236200 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193608.1 samtools variation 237671 237671 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193608.1 samtools variation 237861 237861 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193608.1 samtools variation 238810 238810 . . . alleles " A T"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; known ; N/A GL193608.1 samtools variation 486406 486406 . . . alleles " A G"; frequencies " 0.53448275862069 0.46551724137931"; depth 58 ; known ; synonymous GL193612.1 samtools variation 528909 528909 . . . alleles " G A"; frequencies " 0.759259259259259 0.240740740740741"; depth 54 ; unknown ; N/A GL193613.1 samtools variation 44844 44844 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193613.1 samtools variation 46309 46309 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193613.1 samtools variation 47210 47210 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL193613.1 samtools variation 61274 61274 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193613.1 samtools variation 61368 61368 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193613.1 samtools variation 400693 400693 . . . alleles " C T"; frequencies " 0.478723404255319 0.521276595744681"; depth 94 ; unknown ; N/A GL193613.1 samtools variation 427016 427016 . . . alleles " C A"; frequencies " 0.763736263736264 0.236263736263736"; depth 182 ; unknown ; synonymous GL193613.1 samtools variation 576651 576651 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193613.1 samtools variation 576728 576728 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL193614.1 samtools variation 51868 51868 . . . alleles " G T"; frequencies " 0.685185185185185 0.314814814814815"; depth 54 ; unknown ; N/A GL193614.1 samtools variation 51939 51939 . . . alleles " C T"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; unknown ; N/A GL193614.1 samtools variation 181218 181218 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL193614.1 samtools variation 182311 182311 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; unknown ; N/A GL193614.1 samtools variation 185002 185002 . . . alleles " T G"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL193614.1 samtools variation 186552 186552 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL193614.1 samtools variation 186582 186582 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193614.1 samtools variation 190556 190556 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193614.1 samtools variation 190824 190824 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL193614.1 samtools variation 197774 197774 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL193614.1 samtools variation 198106 198106 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193614.1 samtools variation 199045 199045 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193614.1 samtools variation 203533 203533 . . . alleles " A C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193614.1 samtools variation 217160 217160 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193614.1 samtools variation 217331 217331 . . . alleles " A G"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL193614.1 samtools variation 222437 222437 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193614.1 samtools variation 224497 224497 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 78 ; unknown ; N/A GL193614.1 samtools variation 224678 224678 . . . alleles " T C"; frequencies " 0.492063492063492 0.507936507936508"; depth 63 ; unknown ; synonymous GL193614.1 samtools variation 224850 224850 . . . alleles " T C"; frequencies " 0.353846153846154 0.646153846153846"; depth 65 ; unknown ; synonymous GL193614.1 samtools variation 227267 227267 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 90 ; unknown ; N/A GL193614.1 samtools variation 227383 227383 . . . alleles " G C"; frequencies " 0.508474576271186 0.491525423728814"; depth 59 ; unknown ; N/A GL193614.1 samtools variation 227414 227414 . . . alleles " T C"; frequencies " 0.609375 0.390625"; depth 64 ; unknown ; N/A GL193614.1 samtools variation 227421 227421 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 63 ; unknown ; N/A GL193614.1 samtools variation 227508 227508 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 88 ; unknown ; N/A GL193614.1 samtools variation 227511 227511 . . . alleles " C T"; frequencies " 0.630434782608696 0.369565217391304"; depth 92 ; unknown ; N/A GL193614.1 samtools variation 241277 241277 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL193614.1 samtools variation 242178 242178 . . . alleles " A T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193614.1 samtools variation 265072 265072 . . . alleles " C T"; frequencies " 0.52536231884058 0.47463768115942"; depth 276 ; unknown ; N/A GL193614.1 samtools variation 268508 268508 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193614.1 samtools variation 273856 273856 . . . alleles " C T"; frequencies " 0.440397350993377 0.559602649006622"; depth 604 ; unknown ; synonymous GL193614.1 samtools variation 274593 274593 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193614.1 samtools variation 277245 277245 . . . alleles " T G"; frequencies " 0.448630136986301 0.551369863013699"; depth 292 ; unknown ; N/A GL193614.1 samtools variation 277569 277569 . . . alleles " C T"; frequencies " 0.40625 0.59375"; depth 32 ; unknown ; non-synonymous GL193614.1 samtools variation 285460 285460 . . . alleles " T A"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL193614.1 samtools variation 285461 285461 . . . alleles " C T"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL193614.1 samtools variation 457859 457859 . . . alleles " G C"; frequencies " 0.761904761904762 0.238095238095238"; depth 105 ; unknown ; N/A GL193614.1 samtools variation 466672 466672 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 42 ; known ; N/A GL193614.1 samtools variation 467134 467134 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 55 ; unknown ; N/A GL193614.1 samtools variation 467633 467633 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; N/A GL193614.1 samtools variation 468158 468158 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL193614.1 samtools variation 469416 469416 . . . alleles " T C"; frequencies " 0.767123287671233 0.232876712328767"; depth 73 ; unknown ; N/A GL193614.1 samtools variation 474638 474638 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL193614.1 samtools variation 474669 474669 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; unknown ; N/A GL193614.1 samtools variation 474808 474808 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 48 ; unknown ; N/A GL193614.1 samtools variation 475012 475012 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193614.1 samtools variation 475979 475979 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193614.1 samtools variation 491182 491182 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193614.1 samtools variation 501202 501202 . . . alleles " A C"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; known ; synonymous GL193614.1 samtools variation 514050 514050 . . . alleles " T G"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; known ; N/A GL193614.1 samtools variation 528342 528342 . . . alleles " A G"; frequencies " 0.746478873239437 0.253521126760563"; depth 71 ; known ; N/A GL193614.1 samtools variation 528772 528772 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193614.1 samtools variation 529668 529668 . . . alleles " G A"; frequencies " 0.42 0.58"; depth 50 ; known ; N/A GL193614.1 samtools variation 530168 530168 . . . alleles " A G"; frequencies " 0.335403726708075 0.664596273291925"; depth 161 ; known ; N/A GL193616.1 samtools variation 196159 196159 . . . alleles " A G"; frequencies " 0.315094339622641 0.684905660377358"; depth 530 ; known ; N/A GL193616.1 samtools variation 197828 197828 . . . alleles " A G"; frequencies " 0.63 0.37"; depth 100 ; known ; N/A GL193616.1 samtools variation 198500 198500 . . . alleles " C T"; frequencies " 0.779661016949153 0.211864406779661"; depth 118 ; unknown ; synonymous GL193616.1 samtools variation 204154 204154 . . . alleles " G A"; frequencies " 0.794392523364486 0.205607476635514"; depth 214 ; unknown ; non-synonymous GL193616.1 samtools variation 319220 319220 . . . alleles " G A"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; non-synonymous GL193616.1 samtools variation 407929 407929 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; unknown ; synonymous GL193616.1 samtools variation 498493 498493 . . . alleles " C G"; frequencies " 0.479452054794521 0.520547945205479"; depth 146 ; unknown ; N/A GL193616.1 samtools variation 529497 529497 . . . alleles " T C"; frequencies " 0.212201591511936 0.787798408488064"; depth 377 ; unknown ; synonymous GL193616.1 samtools variation 544034 544034 . . . alleles " A G"; frequencies " 0.734463276836158 0.265536723163842"; depth 531 ; unknown ; N/A GL193617.1 samtools variation 109975 109975 . . . alleles " A C"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL193617.1 samtools variation 146601 146601 . . . alleles " T C"; frequencies " 0.660377358490566 0.339622641509434"; depth 53 ; unknown ; synonymous GL193618.1 samtools variation 88956 88956 . . . alleles " A T"; frequencies " 0.56 0.44"; depth 125 ; unknown ; N/A GL193618.1 samtools variation 89979 89979 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193618.1 samtools variation 91595 91595 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193618.1 samtools variation 107303 107303 . . . alleles " A C"; frequencies " 0.695238095238095 0.304761904761905"; depth 105 ; unknown ; N/A GL193618.1 samtools variation 107400 107400 . . . alleles " C T"; frequencies " 0.70391061452514 0.29608938547486"; depth 179 ; unknown ; N/A GL193618.1 samtools variation 107786 107786 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193618.1 samtools variation 112529 112529 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL193618.1 samtools variation 114068 114068 . . . alleles " T C"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL193618.1 samtools variation 204116 204116 . . . alleles " A T"; frequencies " 0.785714285714286 0.214285714285714"; depth 56 ; unknown ; N/A GL193618.1 samtools variation 209894 209894 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193618.1 samtools variation 225556 225556 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193618.1 samtools variation 226163 226163 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193618.1 samtools variation 425567 425567 . . . alleles " G C"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; non-synonymous GL193618.1 samtools variation 439325 439325 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193618.1 samtools variation 467325 467325 . . . alleles " C T"; frequencies " 0.28169014084507 0.71830985915493"; depth 71 ; unknown ; non-synonymous GL193618.1 samtools variation 502431 502431 . . . alleles " G A"; frequencies " 0.218390804597701 0.781609195402299"; depth 174 ; unknown ; non-synonymous GL193618.1 samtools variation 582754 582754 . . . alleles " G A"; frequencies " 0.622641509433962 0.377358490566038"; depth 212 ; unknown ; non-synonymous GL193619.1 samtools variation 140032 140032 . . . alleles " C T"; frequencies " 0.67948717948718 0.320512820512821"; depth 78 ; unknown ; N/A GL193619.1 samtools variation 216489 216489 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193619.1 samtools variation 548098 548098 . . . alleles " G A"; frequencies " 0.757180156657963 0.242819843342037"; depth 383 ; known ; non-synonymous GL193619.1 samtools variation 548112 548112 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 323 ; known ; synonymous GL193619.1 samtools variation 557817 557817 . . . alleles " A G"; frequencies " 0.597222222222222 0.402777777777778"; depth 72 ; unknown ; N/A GL193619.1 samtools variation 558038 558038 . . . alleles " T C"; frequencies " 0.577160493827161 0.422839506172839"; depth 324 ; unknown ; N/A GL193619.1 samtools variation 558240 558240 . . . alleles " C T"; frequencies " 0.55177743431221 0.44822256568779"; depth 647 ; unknown ; N/A GL193619.1 samtools variation 558599 558599 . . . alleles " A G"; frequencies " 0.283870967741935 0.716129032258065"; depth 155 ; unknown ; N/A GL193620.1 samtools variation 321133 321133 . . . alleles " G C"; frequencies " 0.576271186440678 0.423728813559322"; depth 59 ; unknown ; non-synonymous GL193621.1 samtools variation 233438 233438 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL193621.1 samtools variation 235449 235449 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193621.1 samtools variation 235745 235745 . . . alleles " G A"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; non-synonymous GL193621.1 samtools variation 236686 236686 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193621.1 samtools variation 238658 238658 . . . alleles " A G"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; known ; non-synonymous GL193621.1 samtools variation 238778 238778 . . . alleles " G A"; frequencies " 0.585365853658537 0.414634146341463"; depth 82 ; known ; non-synonymous GL193621.1 samtools variation 243629 243629 . . . alleles " G A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL193621.1 samtools variation 243660 243660 . . . alleles " C T"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL193621.1 samtools variation 244677 244677 . . . alleles " T C"; frequencies " 0.527777777777778 0.472222222222222"; depth 72 ; known ; N/A GL193621.1 samtools variation 245421 245421 . . . alleles " T A"; frequencies " 0.307692307692308 0.666666666666667"; depth 39 ; known ; N/A GL193621.1 samtools variation 489428 489428 . . . alleles " A G"; frequencies " 0.549295774647887 0.450704225352113"; depth 71 ; unknown ; N/A GL193621.1 samtools variation 504586 504586 . . . alleles " A C"; frequencies " 0.2 0.8"; depth 135 ; known ; N/A GL193622.1 samtools variation 6873 6873 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193622.1 samtools variation 14292 14292 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL193622.1 samtools variation 252550 252550 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193622.1 samtools variation 299166 299166 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 42 ; known ; N/A GL193622.1 samtools variation 300184 300184 . . . alleles " C T"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; known ; N/A GL193622.1 samtools variation 304761 304761 . . . alleles " T G"; frequencies " 0.754464285714286 0.245535714285714"; depth 224 ; unknown ; N/A GL193622.1 samtools variation 381755 381755 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193622.1 samtools variation 382740 382740 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193622.1 samtools variation 393389 393389 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL193622.1 samtools variation 401374 401374 . . . alleles " C T"; frequencies " 0.73015873015873 0.26984126984127"; depth 189 ; unknown ; N/A GL193622.1 samtools variation 401606 401606 . . . alleles " G C"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; known ; N/A GL193622.1 samtools variation 401801 401801 . . . alleles " G A"; frequencies " 0.660919540229885 0.339080459770115"; depth 174 ; known ; N/A GL193622.1 samtools variation 402273 402273 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 90 ; unknown ; N/A GL193622.1 samtools variation 402357 402357 . . . alleles " T C"; frequencies " 0.763636363636364 0.236363636363636"; depth 55 ; unknown ; N/A GL193622.1 samtools variation 402362 402362 . . . alleles " C G"; frequencies " 0.758620689655172 0.241379310344828"; depth 58 ; unknown ; N/A GL193622.1 samtools variation 404361 404361 . . . alleles " T A"; frequencies " 0.641509433962264 0.358490566037736"; depth 53 ; unknown ; N/A GL193622.1 samtools variation 404844 404844 . . . alleles " G A"; frequencies " 0.719101123595506 0.280898876404494"; depth 267 ; unknown ; N/A GL193622.1 samtools variation 406052 406052 . . . alleles " G A"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL193622.1 samtools variation 406101 406101 . . . alleles " C G"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; known ; N/A GL193622.1 samtools variation 409212 409212 . . . alleles " G C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193622.1 samtools variation 409248 409248 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; known ; N/A GL193622.1 samtools variation 409428 409428 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193622.1 samtools variation 410556 410556 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193622.1 samtools variation 410725 410725 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193622.1 samtools variation 411112 411112 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193622.1 samtools variation 415850 415850 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL193622.1 samtools variation 416226 416226 . . . alleles " G A"; frequencies " 0.670120898100173 0.329879101899827"; depth 579 ; known ; synonymous GL193622.1 samtools variation 417516 417516 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL193622.1 samtools variation 417689 417689 . . . alleles " T G"; frequencies " 0.2 0.8"; depth 25 ; known ; N/A GL193622.1 samtools variation 423828 423828 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL193622.1 samtools variation 425002 425002 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193622.1 samtools variation 451504 451504 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193622.1 samtools variation 548384 548384 . . . alleles " T A"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; known ; N/A GL193624.1 samtools variation 79387 79387 . . . alleles " C T"; frequencies " 0.701030927835051 0.298969072164948"; depth 97 ; unknown ; synonymous GL193624.1 samtools variation 79396 79396 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 75 ; unknown ; synonymous GL193624.1 samtools variation 79658 79658 . . . alleles " T C"; frequencies " 0.690721649484536 0.309278350515464"; depth 97 ; unknown ; non-synonymous GL193624.1 samtools variation 79813 79813 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 90 ; unknown ; synonymous GL193624.1 samtools variation 79846 79846 . . . alleles " C T"; frequencies " 0.682352941176471 0.317647058823529"; depth 85 ; unknown ; synonymous GL193624.1 samtools variation 79951 79951 . . . alleles " G A"; frequencies " 0.763513513513513 0.236486486486486"; depth 148 ; unknown ; synonymous GL193624.1 samtools variation 80031 80031 . . . alleles " A G"; frequencies " 0.742857142857143 0.257142857142857"; depth 140 ; unknown ; synonymous GL193624.1 samtools variation 80041 80041 . . . alleles " T C"; frequencies " 0.731884057971015 0.268115942028986"; depth 138 ; unknown ; synonymous GL193624.1 samtools variation 102790 102790 . . . alleles " A G"; frequencies " 0.543478260869565 0.456521739130435"; depth 46 ; unknown ; N/A GL193624.1 samtools variation 206665 206665 . . . alleles " C G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193624.1 samtools variation 406716 406716 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 55 ; unknown ; N/A GL193626.1 samtools variation 402121 402121 . . . alleles " C T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; synonymous GL193629.1 samtools variation 12679 12679 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL193629.1 samtools variation 40228 40228 . . . alleles " C A"; frequencies " 0.637464675010093 0.36213161081954"; depth 2477 ; unknown ; N/A GL193629.1 samtools variation 45640 45640 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193629.1 samtools variation 51564 51564 . . . alleles " T G"; frequencies " 0.760869565217391 0.239130434782609"; depth 46 ; unknown ; N/A GL193629.1 samtools variation 51891 51891 . . . alleles " C G"; frequencies " 0.586206896551724 0.413793103448276"; depth 58 ; unknown ; N/A GL193629.1 samtools variation 53029 53029 . . . alleles " G T"; frequencies " 0.723076923076923 0.276923076923077"; depth 65 ; unknown ; N/A GL193629.1 samtools variation 54402 54402 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193629.1 samtools variation 67731 67731 . . . alleles " A G"; frequencies " 0.434359805510535 0.565640194489465"; depth 617 ; unknown ; synonymous GL193629.1 samtools variation 70767 70767 . . . alleles " C T"; frequencies " 0.691666666666667 0.308333333333333"; depth 960 ; unknown ; synonymous GL193629.1 samtools variation 72430 72430 . . . alleles " C G"; frequencies " 0.443017656500803 0.556982343499197"; depth 623 ; unknown ; synonymous GL193629.1 samtools variation 208833 208833 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193631.1 samtools variation 8340 8340 . . . alleles " C G"; frequencies " 0.536585365853659 0.463414634146341"; depth 82 ; unknown ; N/A GL193631.1 samtools variation 329363 329363 . . . alleles " G A"; frequencies " 0.324324324324324 0.675675675675676"; depth 37 ; unknown ; synonymous GL193633.1 samtools variation 8261 8261 . . . alleles " A G"; frequencies " 0.60655737704918 0.39344262295082"; depth 61 ; known ; N/A GL193633.1 samtools variation 94846 94846 . . . alleles " G C"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; non-synonymous GL193633.1 samtools variation 197628 197628 . . . alleles " T A"; frequencies " 0.794871794871795 0.205128205128205"; depth 78 ; unknown ; N/A GL193633.1 samtools variation 220304 220304 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193633.1 samtools variation 245161 245161 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL193633.1 samtools variation 247307 247307 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 54 ; unknown ; N/A GL193633.1 samtools variation 248334 248334 . . . alleles " A T"; frequencies " 0.590909090909091 0.409090909090909"; depth 88 ; unknown ; N/A GL193633.1 samtools variation 250517 250517 . . . alleles " A G"; frequencies " 0.540540540540541 0.459459459459459"; depth 37 ; unknown ; N/A GL193633.1 samtools variation 404602 404602 . . . alleles " A G"; frequencies " 0.471830985915493 0.528169014084507"; depth 142 ; unknown ; non-synonymous GL193633.1 samtools variation 456540 456540 . . . alleles " T G"; frequencies " 0.434782608695652 0.565217391304348"; depth 69 ; unknown ; N/A GL193633.1 samtools variation 503189 503189 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193633.1 samtools variation 521159 521159 . . . alleles " T C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL193633.1 samtools variation 522344 522344 . . . alleles " G A"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL193633.1 samtools variation 528107 528107 . . . alleles " T C"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; unknown ; N/A GL193633.1 samtools variation 532220 532220 . . . alleles " C T"; frequencies " 0.777429467084639 0.22257053291536"; depth 638 ; unknown ; synonymous GL193633.1 samtools variation 540091 540091 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193633.1 samtools variation 552186 552186 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL193635.1 samtools variation 232595 232595 . . . alleles " A C"; frequencies " 0.782608695652174 0.217391304347826"; depth 92 ; unknown ; synonymous GL193635.1 samtools variation 502329 502329 . . . alleles " A T"; frequencies " 0.76056338028169 0.23943661971831"; depth 142 ; unknown ; synonymous GL193635.1 samtools variation 507464 507464 . . . alleles " C T"; frequencies " 0.63013698630137 0.36986301369863"; depth 73 ; unknown ; non-synonymous GL193635.1 samtools variation 524555 524555 . . . alleles " A G"; frequencies " 0.415730337078652 0.584269662921348"; depth 89 ; unknown ; non-synonymous GL193635.1 samtools variation 524755 524755 . . . alleles " C T"; frequencies " 0.392638036809816 0.607361963190184"; depth 163 ; known ; synonymous GL193635.1 samtools variation 534083 534083 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; non-synonymous GL193636.1 samtools variation 382544 382544 . . . alleles " C T"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; known ; N/A GL193636.1 samtools variation 382659 382659 . . . alleles " C T"; frequencies " 0.386138613861386 0.613861386138614"; depth 101 ; known ; N/A GL193636.1 samtools variation 383514 383514 . . . alleles " C T"; frequencies " 0.303030303030303 0.696969696969697"; depth 33 ; known ; N/A GL193636.1 samtools variation 383876 383876 . . . alleles " G A"; frequencies " 0.63855421686747 0.36144578313253"; depth 166 ; known ; N/A GL193636.1 samtools variation 384413 384413 . . . alleles " C G"; frequencies " 0.708955223880597 0.291044776119403"; depth 134 ; known ; N/A GL193637.1 samtools variation 134182 134182 . . . alleles " G C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL193637.1 samtools variation 152417 152417 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193637.1 samtools variation 437037 437037 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193637.1 samtools variation 478594 478594 . . . alleles " C T"; frequencies " 0.797560975609756 0.202439024390244"; depth 410 ; unknown ; N/A GL193637.1 samtools variation 522847 522847 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL193637.1 samtools variation 561965 561965 . . . alleles " G T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL193638.1 samtools variation 125640 125640 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; known ; N/A GL193638.1 samtools variation 126311 126311 . . . alleles " G C"; frequencies " 0.256410256410256 0.743589743589744"; depth 39 ; known ; non-synonymous GL193638.1 samtools variation 351666 351666 . . . alleles " G A"; frequencies " 0.655172413793103 0.344827586206897"; depth 145 ; unknown ; N/A GL193638.1 samtools variation 351667 351667 . . . alleles " C A"; frequencies " 0.675324675324675 0.324675324675325"; depth 154 ; unknown ; N/A GL193638.1 samtools variation 359362 359362 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 30 ; known ; N/A GL193638.1 samtools variation 362019 362019 . . . alleles " G C"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; known ; N/A GL193638.1 samtools variation 369548 369548 . . . alleles " C T"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL193638.1 samtools variation 405396 405396 . . . alleles " T C"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; unknown ; N/A GL193638.1 samtools variation 407398 407398 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193639.1 samtools variation 114360 114360 . . . alleles " A T"; frequencies " 0.791666666666667 0.208333333333333"; depth 144 ; unknown ; N/A GL193639.1 samtools variation 406015 406015 . . . alleles " C A"; frequencies " 0.488888888888889 0.511111111111111"; depth 45 ; unknown ; N/A GL193639.1 samtools variation 431871 431871 . . . alleles " C G"; frequencies " 0.405405405405405 0.594594594594595"; depth 37 ; unknown ; non-synonymous GL193639.1 samtools variation 444524 444524 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193642.1 samtools variation 279531 279531 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL193642.1 samtools variation 279728 279728 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193642.1 samtools variation 279967 279967 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193642.1 samtools variation 438861 438861 . . . alleles " G C"; frequencies " 0.540983606557377 0.459016393442623"; depth 61 ; known ; N/A GL193643.1 samtools variation 87493 87493 . . . alleles " C T"; frequencies " 0.288244766505636 0.711755233494364"; depth 621 ; unknown ; N/A GL193643.1 samtools variation 334992 334992 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193643.1 samtools variation 335002 335002 . . . alleles " C A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193643.1 samtools variation 357520 357520 . . . alleles " A T"; frequencies " 0.76 0.24"; depth 50 ; unknown ; N/A GL193643.1 samtools variation 373275 373275 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; N/A GL193643.1 samtools variation 377052 377052 . . . alleles " C T"; frequencies " 0.294736842105263 0.705263157894737"; depth 95 ; unknown ; N/A GL193643.1 samtools variation 377411 377411 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193643.1 samtools variation 377998 377998 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193643.1 samtools variation 382816 382816 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 30 ; unknown ; N/A GL193643.1 samtools variation 384906 384906 . . . alleles " G C"; frequencies " 0.763688760806916 0.236311239193084"; depth 347 ; unknown ; non-synonymous GL193643.1 samtools variation 394183 394183 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193643.1 samtools variation 397777 397777 . . . alleles " C T"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; unknown ; N/A GL193643.1 samtools variation 406914 406914 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; N/A GL193643.1 samtools variation 406954 406954 . . . alleles " T C"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; unknown ; N/A GL193643.1 samtools variation 407292 407292 . . . alleles " A G"; frequencies " 0.734939759036145 0.265060240963855"; depth 83 ; unknown ; N/A GL193643.1 samtools variation 407472 407472 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 187 ; unknown ; N/A GL193643.1 samtools variation 409557 409557 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193643.1 samtools variation 411771 411771 . . . alleles " G A"; frequencies " 0.756756756756757 0.243243243243243"; depth 148 ; unknown ; N/A GL193643.1 samtools variation 412677 412677 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 56 ; unknown ; N/A GL193643.1 samtools variation 414146 414146 . . . alleles " C T"; frequencies " 0.779411764705882 0.220588235294118"; depth 68 ; unknown ; N/A GL193643.1 samtools variation 414231 414231 . . . alleles " C A"; frequencies " 0.796610169491525 0.203389830508475"; depth 59 ; unknown ; N/A GL193643.1 samtools variation 417008 417008 . . . alleles " A G"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; unknown ; N/A GL193643.1 samtools variation 417451 417451 . . . alleles " C T"; frequencies " 0.525 0.475"; depth 40 ; unknown ; N/A GL193643.1 samtools variation 417682 417682 . . . alleles " G A"; frequencies " 0.56 0.44"; depth 50 ; unknown ; N/A GL193643.1 samtools variation 417894 417894 . . . alleles " G A"; frequencies " 0.531531531531532 0.468468468468468"; depth 111 ; unknown ; N/A GL193643.1 samtools variation 418276 418276 . . . alleles " G A"; frequencies " 0.601134215500945 0.398865784499055"; depth 529 ; unknown ; non-synonymous GL193643.1 samtools variation 418311 418311 . . . alleles " A G"; frequencies " 0.544715447154472 0.455284552845528"; depth 492 ; unknown ; synonymous GL193643.1 samtools variation 418401 418401 . . . alleles " A G"; frequencies " 0.537735849056604 0.462264150943396"; depth 106 ; unknown ; N/A GL193643.1 samtools variation 418604 418604 . . . alleles " G T"; frequencies " 0.647058823529412 0.352941176470588"; depth 51 ; known ; N/A GL193643.1 samtools variation 419267 419267 . . . alleles " T C"; frequencies " 0.716981132075472 0.283018867924528"; depth 53 ; unknown ; N/A GL193643.1 samtools variation 419482 419482 . . . alleles " A G"; frequencies " 0.362068965517241 0.632183908045977"; depth 174 ; unknown ; non-synonymous GL193643.1 samtools variation 419591 419591 . . . alleles " A C"; frequencies " 0.4375 0.5625"; depth 32 ; unknown ; N/A GL193643.1 samtools variation 420239 420239 . . . alleles " G A"; frequencies " 0.54014598540146 0.45985401459854"; depth 137 ; unknown ; N/A GL193643.1 samtools variation 420352 420352 . . . alleles " T C"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; N/A GL193643.1 samtools variation 420721 420721 . . . alleles " C A"; frequencies " 0.691906005221932 0.308093994778068"; depth 383 ; unknown ; N/A GL193643.1 samtools variation 420722 420722 . . . alleles " A T"; frequencies " 0.690104166666667 0.309895833333333"; depth 384 ; unknown ; N/A GL193643.1 samtools variation 424760 424760 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 273 ; unknown ; N/A GL193643.1 samtools variation 424766 424766 . . . alleles " A T"; frequencies " 0.750889679715303 0.249110320284698"; depth 281 ; unknown ; N/A GL193643.1 samtools variation 425238 425238 . . . alleles " C T"; frequencies " 0.371428571428571 0.628571428571429"; depth 175 ; unknown ; N/A GL193643.1 samtools variation 425644 425644 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 260 ; unknown ; synonymous GL193643.1 samtools variation 426147 426147 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 99 ; unknown ; N/A GL193643.1 samtools variation 426213 426213 . . . alleles " G A"; frequencies " 0.525773195876289 0.474226804123711"; depth 97 ; unknown ; N/A GL193643.1 samtools variation 427145 427145 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; N/A GL193643.1 samtools variation 427206 427206 . . . alleles " G C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193643.1 samtools variation 427281 427281 . . . alleles " A G"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL193643.1 samtools variation 427309 427309 . . . alleles " C T"; frequencies " 0.594594594594595 0.405405405405405"; depth 37 ; unknown ; N/A GL193643.1 samtools variation 427554 427554 . . . alleles " T C"; frequencies " 0.465671641791045 0.534328358208955"; depth 335 ; unknown ; N/A GL193643.1 samtools variation 428485 428485 . . . alleles " G C"; frequencies " 0.610547667342799 0.389452332657201"; depth 493 ; unknown ; N/A GL193643.1 samtools variation 428486 428486 . . . alleles " G A"; frequencies " 0.609856262833676 0.390143737166324"; depth 487 ; unknown ; N/A GL193643.1 samtools variation 428551 428551 . . . alleles " C T"; frequencies " 0.583482944344704 0.416517055655296"; depth 557 ; unknown ; N/A GL193643.1 samtools variation 428615 428615 . . . alleles " T C"; frequencies " 0.557971014492754 0.442028985507246"; depth 414 ; unknown ; N/A GL193643.1 samtools variation 428692 428692 . . . alleles " G A"; frequencies " 0.521575984990619 0.478424015009381"; depth 533 ; unknown ; N/A GL193643.1 samtools variation 428991 428991 . . . alleles " A G"; frequencies " 0.451025056947608 0.548974943052392"; depth 878 ; unknown ; N/A GL193643.1 samtools variation 429174 429174 . . . alleles " G A"; frequencies " 0.467314487632509 0.532685512367491"; depth 1132 ; unknown ; N/A GL193643.1 samtools variation 430476 430476 . . . alleles " G A"; frequencies " 0.595983935742972 0.404016064257028"; depth 1245 ; unknown ; N/A GL193643.1 samtools variation 431023 431023 . . . alleles " A G"; frequencies " 0.48 0.52"; depth 50 ; unknown ; N/A GL193643.1 samtools variation 471545 471545 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; synonymous GL193643.1 samtools variation 482759 482759 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 25 ; known ; non-synonymous GL193643.1 samtools variation 490538 490538 . . . alleles " G T"; frequencies " 0.230769230769231 0.769230769230769"; depth 39 ; known ; N/A GL193643.1 samtools variation 490582 490582 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL193643.1 samtools variation 491305 491305 . . . alleles " G C"; frequencies " 0.294117647058824 0.705882352941177"; depth 34 ; known ; N/A GL193643.1 samtools variation 491491 491491 . . . alleles " G T"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL193643.1 samtools variation 498188 498188 . . . alleles " A G"; frequencies " 0.431372549019608 0.568627450980392"; depth 255 ; known ; N/A GL193643.1 samtools variation 499253 499253 . . . alleles " G C"; frequencies " 0.557416267942584 0.442583732057416"; depth 836 ; unknown ; N/A GL193643.1 samtools variation 503017 503017 . . . alleles " A C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL193646.1 samtools variation 84 84 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193646.1 samtools variation 163386 163386 . . . alleles " T C"; frequencies " 0.79375 0.20625"; depth 160 ; unknown ; N/A GL193646.1 samtools variation 164257 164257 . . . alleles " G C"; frequencies " 0.732142857142857 0.267857142857143"; depth 112 ; unknown ; N/A GL193646.1 samtools variation 175601 175601 . . . alleles " T G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; known ; N/A GL193646.1 samtools variation 459793 459793 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; synonymous GL193647.1 samtools variation 451429 451429 . . . alleles " C T"; frequencies " 0.702297702297702 0.297702297702298"; depth 1001 ; known ; N/A GL193647.1 samtools variation 466399 466399 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL193647.1 samtools variation 474216 474216 . . . alleles " C T"; frequencies " 0.737430167597765 0.262569832402235"; depth 537 ; unknown ; non-synonymous GL193647.1 samtools variation 480984 480984 . . . alleles " G T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL193647.1 samtools variation 481836 481836 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 65 ; known ; N/A GL193647.1 samtools variation 545539 545539 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL193648.1 samtools variation 13506 13506 . . . alleles " T C"; frequencies " 0.573951434878587 0.426048565121413"; depth 453 ; unknown ; N/A GL193648.1 samtools variation 24621 24621 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193648.1 samtools variation 24666 24666 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193648.1 samtools variation 71518 71518 . . . alleles " G A"; frequencies " 0.797250859106529 0.202749140893471"; depth 291 ; unknown ; non-synonymous GL193648.1 samtools variation 89311 89311 . . . alleles " A G"; frequencies " 0.313207547169811 0.686792452830189"; depth 265 ; known ; non-synonymous GL193648.1 samtools variation 137375 137375 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193648.1 samtools variation 171930 171930 . . . alleles " C T"; frequencies " 0.630769230769231 0.369230769230769"; depth 65 ; unknown ; synonymous GL193648.1 samtools variation 173700 173700 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193648.1 samtools variation 180730 180730 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193648.1 samtools variation 518368 518368 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193648.1 samtools variation 519192 519192 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL193648.1 samtools variation 519293 519293 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL193649.1 samtools variation 71231 71231 . . . alleles " G A"; frequencies " 0.536585365853659 0.463414634146341"; depth 123 ; known ; non-synonymous GL193649.1 samtools variation 93865 93865 . . . alleles " T G"; frequencies " 0.426966292134831 0.573033707865168"; depth 89 ; known ; non-synonymous GL193649.1 samtools variation 94916 94916 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL193649.1 samtools variation 392077 392077 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 60 ; unknown ; synonymous GL193652.1 samtools variation 10471 10471 . . . alleles " A G"; frequencies " 0.361111111111111 0.638888888888889"; depth 36 ; known ; N/A GL193652.1 samtools variation 83613 83613 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; synonymous GL193652.1 samtools variation 124796 124796 . . . alleles " G A"; frequencies " 0.35 0.65"; depth 60 ; known ; non-synonymous GL193652.1 samtools variation 192055 192055 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193653.1 samtools variation 384315 384315 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193653.1 samtools variation 384794 384794 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193653.1 samtools variation 384868 384868 . . . alleles " A G"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL193653.1 samtools variation 384878 384878 . . . alleles " A G"; frequencies " 0.219512195121951 0.780487804878049"; depth 41 ; known ; N/A GL193653.1 samtools variation 387998 387998 . . . alleles " A C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL193653.1 samtools variation 399860 399860 . . . alleles " G C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193653.1 samtools variation 402759 402759 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL193653.1 samtools variation 402764 402764 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193653.1 samtools variation 430869 430869 . . . alleles " C A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193653.1 samtools variation 431567 431567 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193653.1 samtools variation 432484 432484 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193653.1 samtools variation 433028 433028 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193653.1 samtools variation 434033 434033 . . . alleles " G A"; frequencies " 0.317073170731707 0.682926829268293"; depth 41 ; known ; N/A GL193653.1 samtools variation 434039 434039 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL193653.1 samtools variation 434767 434767 . . . alleles " A T"; frequencies " 0.349056603773585 0.650943396226415"; depth 106 ; known ; N/A GL193653.1 samtools variation 434778 434778 . . . alleles " C T"; frequencies " 0.317757009345794 0.682242990654206"; depth 107 ; known ; N/A GL193653.1 samtools variation 442199 442199 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193653.1 samtools variation 444242 444242 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193653.1 samtools variation 444294 444294 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193654.1 samtools variation 853 853 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL193654.1 samtools variation 859 859 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL193654.1 samtools variation 532375 532375 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; known ; N/A GL193654.1 samtools variation 534775 534775 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL193654.1 samtools variation 547478 547478 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 58 ; unknown ; N/A GL193654.1 samtools variation 548044 548044 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL193654.1 samtools variation 548109 548109 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193654.1 samtools variation 548368 548368 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193654.1 samtools variation 565001 565001 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL193654.1 samtools variation 565061 565061 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL193655.1 samtools variation 110844 110844 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193655.1 samtools variation 126496 126496 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; N/A GL193655.1 samtools variation 231004 231004 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 35 ; known ; N/A GL193655.1 samtools variation 235740 235740 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL193655.1 samtools variation 498741 498741 . . . alleles " C T"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL193655.1 samtools variation 498814 498814 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193655.1 samtools variation 500712 500712 . . . alleles " C G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL193655.1 samtools variation 501893 501893 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; non-synonymous GL193655.1 samtools variation 511316 511316 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 34 ; unknown ; N/A GL193655.1 samtools variation 513105 513105 . . . alleles " T C"; frequencies " 0.512820512820513 0.487179487179487"; depth 39 ; unknown ; N/A GL193655.1 samtools variation 513665 513665 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193655.1 samtools variation 514387 514387 . . . alleles " T C"; frequencies " 0.782241014799154 0.217758985200846"; depth 473 ; unknown ; N/A GL193655.1 samtools variation 534210 534210 . . . alleles " G A"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL193655.1 samtools variation 542787 542787 . . . alleles " C T"; frequencies " 0.530612244897959 0.469387755102041"; depth 49 ; known ; N/A GL193656.1 samtools variation 132686 132686 . . . alleles " G A"; frequencies " 0.483333333333333 0.516666666666667"; depth 60 ; unknown ; synonymous GL193656.1 samtools variation 167124 167124 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193656.1 samtools variation 168220 168220 . . . alleles " C T"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; unknown ; N/A GL193656.1 samtools variation 352245 352245 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193658.1 samtools variation 271211 271211 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 30 ; known ; N/A GL193658.1 samtools variation 271249 271249 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193658.1 samtools variation 271640 271640 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193658.1 samtools variation 275053 275053 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193658.1 samtools variation 294907 294907 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; non-synonymous GL193658.1 samtools variation 295721 295721 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; synonymous GL193658.1 samtools variation 296063 296063 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; known ; synonymous GL193658.1 samtools variation 296359 296359 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; non-synonymous GL193658.1 samtools variation 297159 297159 . . . alleles " G C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; non-synonymous GL193658.1 samtools variation 297611 297611 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 28 ; known ; synonymous GL193658.1 samtools variation 297668 297668 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; synonymous GL193658.1 samtools variation 297743 297743 . . . alleles " T G"; frequencies " 0.24 0.76"; depth 25 ; known ; non-synonymous GL193659.1 samtools variation 433825 433825 . . . alleles " G A"; frequencies " 0.516666666666667 0.483333333333333"; depth 60 ; known ; N/A GL193660.1 samtools variation 152327 152327 . . . alleles " T C"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; known ; N/A GL193660.1 samtools variation 155436 155436 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; unknown ; N/A GL193660.1 samtools variation 156641 156641 . . . alleles " T C"; frequencies " 0.771084337349398 0.228915662650602"; depth 83 ; known ; N/A GL193660.1 samtools variation 157850 157850 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193660.1 samtools variation 162061 162061 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193660.1 samtools variation 166896 166896 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193660.1 samtools variation 167205 167205 . . . alleles " A G"; frequencies " 0.65625 0.34375"; depth 32 ; known ; N/A GL193660.1 samtools variation 250584 250584 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193660.1 samtools variation 447386 447386 . . . alleles " C T"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL193662.1 samtools variation 37347 37347 . . . alleles " T A"; frequencies " 0.2 0.8"; depth 30 ; unknown ; N/A GL193662.1 samtools variation 48453 48453 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL193662.1 samtools variation 102627 102627 . . . alleles " T C"; frequencies " 0.771739130434783 0.228260869565217"; depth 92 ; known ; N/A GL193662.1 samtools variation 102640 102640 . . . alleles " A G"; frequencies " 0.376344086021505 0.623655913978495"; depth 93 ; unknown ; N/A GL193662.1 samtools variation 125920 125920 . . . alleles " T G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; synonymous GL193662.1 samtools variation 168982 168982 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 60 ; unknown ; N/A GL193662.1 samtools variation 181340 181340 . . . alleles " C T"; frequencies " 0.34375 0.65625"; depth 32 ; unknown ; synonymous GL193662.1 samtools variation 181353 181353 . . . alleles " C T"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; unknown ; non-synonymous GL193662.1 samtools variation 416381 416381 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193662.1 samtools variation 425151 425151 . . . alleles " C T"; frequencies " 0.271317829457364 0.728682170542636"; depth 129 ; unknown ; N/A GL193662.1 samtools variation 426107 426107 . . . alleles " G A"; frequencies " 0.459459459459459 0.540540540540541"; depth 74 ; unknown ; synonymous GL193662.1 samtools variation 426215 426215 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 63 ; unknown ; synonymous GL193662.1 samtools variation 428701 428701 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL193662.1 samtools variation 507505 507505 . . . alleles " C A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL193662.1 samtools variation 510107 510107 . . . alleles " A G"; frequencies " 0.471698113207547 0.528301886792453"; depth 53 ; known ; non-synonymous GL193663.1 samtools variation 56510 56510 . . . alleles " T G"; frequencies " 0.55 0.45"; depth 40 ; known ; N/A GL193663.1 samtools variation 82583 82583 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 35 ; known ; synonymous GL193663.1 samtools variation 86182 86182 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193664.1 samtools variation 155172 155172 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193664.1 samtools variation 183553 183553 . . . alleles " T A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193664.1 samtools variation 277128 277128 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL193664.1 samtools variation 309815 309815 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193664.1 samtools variation 514152 514152 . . . alleles " C A"; frequencies " 0.758064516129032 0.241935483870968"; depth 62 ; unknown ; synonymous GL193664.1 samtools variation 523338 523338 . . . alleles " T G"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL193664.1 samtools variation 523570 523570 . . . alleles " C G"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL193664.1 samtools variation 523613 523613 . . . alleles " C G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193664.1 samtools variation 524838 524838 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193665.1 samtools variation 265555 265555 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; synonymous GL193665.1 samtools variation 265569 265569 . . . alleles " C G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; non-synonymous GL193665.1 samtools variation 281185 281185 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL193665.1 samtools variation 281770 281770 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL193665.1 samtools variation 284138 284138 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193665.1 samtools variation 284692 284692 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193665.1 samtools variation 284710 284710 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193665.1 samtools variation 285907 285907 . . . alleles " T G"; frequencies " 0.45 0.55"; depth 20 ; unknown ; non-synonymous GL193665.1 samtools variation 286091 286091 . . . alleles " C A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; non-synonymous GL193665.1 samtools variation 286386 286386 . . . alleles " T A"; frequencies " 0.493670886075949 0.506329113924051"; depth 79 ; unknown ; synonymous GL193665.1 samtools variation 286556 286556 . . . alleles " C T"; frequencies " 0.638392857142857 0.361607142857143"; depth 224 ; unknown ; non-synonymous GL193665.1 samtools variation 286860 286860 . . . alleles " A G"; frequencies " 0.612068965517241 0.387931034482759"; depth 116 ; unknown ; synonymous GL193665.1 samtools variation 287258 287258 . . . alleles " A G"; frequencies " 0.644927536231884 0.355072463768116"; depth 138 ; unknown ; non-synonymous GL193665.1 samtools variation 287807 287807 . . . alleles " G A"; frequencies " 0.577981651376147 0.422018348623853"; depth 109 ; unknown ; non-synonymous GL193665.1 samtools variation 287988 287988 . . . alleles " A C"; frequencies " 0.569230769230769 0.430769230769231"; depth 65 ; unknown ; synonymous GL193665.1 samtools variation 288423 288423 . . . alleles " T C"; frequencies " 0.583959899749373 0.416040100250627"; depth 399 ; unknown ; synonymous GL193665.1 samtools variation 288430 288430 . . . alleles " G A"; frequencies " 0.601583113456464 0.398416886543536"; depth 379 ; unknown ; non-synonymous GL193665.1 samtools variation 288638 288638 . . . alleles " A T"; frequencies " 0.555555555555556 0.444444444444444"; depth 81 ; unknown ; non-synonymous GL193665.1 samtools variation 288708 288708 . . . alleles " G A"; frequencies " 0.767123287671233 0.232876712328767"; depth 73 ; known ; synonymous GL193665.1 samtools variation 289320 289320 . . . alleles " G A"; frequencies " 0.611814345991561 0.388185654008439"; depth 237 ; unknown ; synonymous GL193665.1 samtools variation 292293 292293 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193665.1 samtools variation 292319 292319 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193665.1 samtools variation 304062 304062 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193665.1 samtools variation 305014 305014 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193665.1 samtools variation 327527 327527 . . . alleles " G A"; frequencies " 0.721649484536082 0.278350515463918"; depth 388 ; unknown ; N/A GL193665.1 samtools variation 328681 328681 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL193666.1 samtools variation 198523 198523 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193666.1 samtools variation 209548 209548 . . . alleles " C T"; frequencies " 0.656462585034014 0.343537414965986"; depth 294 ; unknown ; synonymous GL193666.1 samtools variation 209869 209869 . . . alleles " G A"; frequencies " 0.743119266055046 0.256880733944954"; depth 109 ; unknown ; synonymous GL193666.1 samtools variation 223678 223678 . . . alleles " C T"; frequencies " 0.682326621923937 0.317673378076063"; depth 894 ; unknown ; synonymous GL193666.1 samtools variation 231358 231358 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193666.1 samtools variation 257741 257741 . . . alleles " G A"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; N/A GL193666.1 samtools variation 296734 296734 . . . alleles " T G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193666.1 samtools variation 301689 301689 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193666.1 samtools variation 465798 465798 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193666.1 samtools variation 466530 466530 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193666.1 samtools variation 466726 466726 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL193666.1 samtools variation 516826 516826 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; synonymous GL193668.1 samtools variation 371441 371441 . . . alleles " A C"; frequencies " 0.2 0.8"; depth 15 ; unknown ; non-synonymous GL193669.1 samtools variation 411325 411325 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; unknown ; N/A GL193669.1 samtools variation 421243 421243 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193669.1 samtools variation 421300 421300 . . . alleles " C T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL193669.1 samtools variation 423608 423608 . . . alleles " C T"; frequencies " 0.629518072289157 0.370481927710843"; depth 332 ; unknown ; N/A GL193669.1 samtools variation 426648 426648 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 60 ; unknown ; N/A GL193669.1 samtools variation 427846 427846 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL193669.1 samtools variation 428578 428578 . . . alleles " A C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193669.1 samtools variation 428821 428821 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL193669.1 samtools variation 493344 493344 . . . alleles " C T"; frequencies " 0.616161616161616 0.383838383838384"; depth 198 ; unknown ; N/A GL193669.1 samtools variation 516202 516202 . . . alleles " T A"; frequencies " 0.787878787878788 0.212121212121212"; depth 198 ; unknown ; N/A GL193673.1 samtools variation 56751 56751 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; synonymous GL193673.1 samtools variation 117889 117889 . . . alleles " T A"; frequencies " 0.305555555555556 0.694444444444444"; depth 36 ; known ; N/A GL193674.1 samtools variation 35831 35831 . . . alleles " G A"; frequencies " 0.266666666666667 0.733333333333333"; depth 45 ; unknown ; N/A GL193677.1 samtools variation 67432 67432 . . . alleles " G T"; frequencies " 0.338983050847458 0.661016949152542"; depth 59 ; known ; N/A GL193677.1 samtools variation 363214 363214 . . . alleles " C T"; frequencies " 0.644736842105263 0.355263157894737"; depth 152 ; unknown ; N/A GL193677.1 samtools variation 379333 379333 . . . alleles " G A"; frequencies " 0.633928571428571 0.366071428571429"; depth 224 ; unknown ; synonymous GL193677.1 samtools variation 389284 389284 . . . alleles " G A"; frequencies " 0.582278481012658 0.417721518987342"; depth 237 ; known ; non-synonymous GL193677.1 samtools variation 412696 412696 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193677.1 samtools variation 416372 416372 . . . alleles " C A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193677.1 samtools variation 421691 421691 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193677.1 samtools variation 427689 427689 . . . alleles " A G"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL193677.1 samtools variation 428610 428610 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL193677.1 samtools variation 428884 428884 . . . alleles " C T"; frequencies " 0.556719022687609 0.443280977312391"; depth 573 ; unknown ; synonymous GL193677.1 samtools variation 435587 435587 . . . alleles " C T"; frequencies " 0.662337662337662 0.337662337662338"; depth 385 ; known ; non-synonymous GL193677.1 samtools variation 446197 446197 . . . alleles " T C"; frequencies " 0.763888888888889 0.236111111111111"; depth 72 ; known ; synonymous GL193677.1 samtools variation 446451 446451 . . . alleles " G A"; frequencies " 0.796296296296296 0.203703703703704"; depth 54 ; unknown ; synonymous GL193677.1 samtools variation 446544 446544 . . . alleles " C T"; frequencies " 0.296296296296296 0.703703703703704"; depth 54 ; known ; synonymous GL193677.1 samtools variation 453101 453101 . . . alleles " G A"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; synonymous GL193677.1 samtools variation 456763 456763 . . . alleles " G A"; frequencies " 0.735294117647059 0.264705882352941"; depth 68 ; unknown ; synonymous GL193677.1 samtools variation 519783 519783 . . . alleles " A G"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; synonymous GL193677.1 samtools variation 520215 520215 . . . alleles " A G"; frequencies " 0.77124183006536 0.222222222222222"; depth 153 ; unknown ; non-synonymous GL193677.1 samtools variation 521097 521097 . . . alleles " T C"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; non-synonymous GL193678.1 samtools variation 236409 236409 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193678.1 samtools variation 236731 236731 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193678.1 samtools variation 237195 237195 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 56 ; unknown ; N/A GL193678.1 samtools variation 280568 280568 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193678.1 samtools variation 280576 280576 . . . alleles " T A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193679.1 samtools variation 65786 65786 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193679.1 samtools variation 65963 65963 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193680.1 samtools variation 25200 25200 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193680.1 samtools variation 25532 25532 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193680.1 samtools variation 48573 48573 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193680.1 samtools variation 48586 48586 . . . alleles " C G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193680.1 samtools variation 48590 48590 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193680.1 samtools variation 51397 51397 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193680.1 samtools variation 81136 81136 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193680.1 samtools variation 82029 82029 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; synonymous GL193680.1 samtools variation 83511 83511 . . . alleles " G A"; frequencies " 0.784090909090909 0.215909090909091"; depth 88 ; unknown ; N/A GL193680.1 samtools variation 96485 96485 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193680.1 samtools variation 133360 133360 . . . alleles " C T"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; synonymous GL193680.1 samtools variation 135726 135726 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193680.1 samtools variation 136750 136750 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL193680.1 samtools variation 139222 139222 . . . alleles " T G"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL193680.1 samtools variation 270062 270062 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193680.1 samtools variation 287484 287484 . . . alleles " T C"; frequencies " 0.354304635761589 0.645695364238411"; depth 302 ; known ; N/A GL193680.1 samtools variation 288023 288023 . . . alleles " G C"; frequencies " 0.484848484848485 0.515151515151515"; depth 132 ; known ; N/A GL193680.1 samtools variation 289588 289588 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193680.1 samtools variation 289818 289818 . . . alleles " C T"; frequencies " 0.789772727272727 0.210227272727273"; depth 176 ; unknown ; synonymous GL193680.1 samtools variation 292796 292796 . . . alleles " G A"; frequencies " 0.793103448275862 0.206896551724138"; depth 145 ; unknown ; synonymous GL193680.1 samtools variation 330682 330682 . . . alleles " G A"; frequencies " 0.692546583850932 0.305900621118012"; depth 644 ; unknown ; non-synonymous GL193680.1 samtools variation 330940 330940 . . . alleles " A T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193680.1 samtools variation 331912 331912 . . . alleles " T C"; frequencies " 0.587890625 0.412109375"; depth 512 ; known ; N/A GL193680.1 samtools variation 361167 361167 . . . alleles " A G"; frequencies " 0.588785046728972 0.411214953271028"; depth 107 ; known ; N/A GL193680.1 samtools variation 416470 416470 . . . alleles " G A"; frequencies " 0.752577319587629 0.247422680412371"; depth 97 ; unknown ; N/A GL193680.1 samtools variation 421602 421602 . . . alleles " T G"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL193680.1 samtools variation 426445 426445 . . . alleles " T A"; frequencies " 0.650334075723831 0.349665924276169"; depth 449 ; unknown ; N/A GL193680.1 samtools variation 426864 426864 . . . alleles " G A"; frequencies " 0.72635814889336 0.27364185110664"; depth 497 ; unknown ; N/A GL193680.1 samtools variation 428954 428954 . . . alleles " G C"; frequencies " 0.353293413173653 0.646706586826347"; depth 167 ; unknown ; synonymous GL193680.1 samtools variation 428957 428957 . . . alleles " T G"; frequencies " 0.345238095238095 0.654761904761905"; depth 168 ; unknown ; non-synonymous GL193680.1 samtools variation 429300 429300 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 20 ; known ; N/A GL193680.1 samtools variation 433572 433572 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193680.1 samtools variation 434299 434299 . . . alleles " A C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193680.1 samtools variation 435240 435240 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193680.1 samtools variation 435257 435257 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193680.1 samtools variation 435376 435376 . . . alleles " G T"; frequencies " 0.594713656387665 0.405286343612335"; depth 454 ; unknown ; synonymous GL193680.1 samtools variation 435385 435385 . . . alleles " G T"; frequencies " 0.600446428571429 0.399553571428571"; depth 448 ; unknown ; synonymous GL193680.1 samtools variation 435481 435481 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193680.1 samtools variation 436532 436532 . . . alleles " G A"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; N/A GL193680.1 samtools variation 436570 436570 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193680.1 samtools variation 436795 436795 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL193680.1 samtools variation 437661 437661 . . . alleles " T G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL193680.1 samtools variation 461549 461549 . . . alleles " C T"; frequencies " 0.533653846153846 0.456730769230769"; depth 208 ; unknown ; non-synonymous GL193680.1 samtools variation 473599 473599 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193680.1 samtools variation 475372 475372 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 66 ; unknown ; N/A GL193680.1 samtools variation 475422 475422 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 42 ; unknown ; N/A GL193680.1 samtools variation 475977 475977 . . . alleles " G A"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; unknown ; synonymous GL193680.1 samtools variation 476013 476013 . . . alleles " G A"; frequencies " 0.702970297029703 0.297029702970297"; depth 101 ; unknown ; synonymous GL193680.1 samtools variation 477815 477815 . . . alleles " C T"; frequencies " 0.432584269662921 0.567415730337079"; depth 178 ; unknown ; non-synonymous GL193680.1 samtools variation 478358 478358 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193680.1 samtools variation 478388 478388 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL193680.1 samtools variation 485101 485101 . . . alleles " G C"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; known ; synonymous GL193680.1 samtools variation 490576 490576 . . . alleles " A T"; frequencies " 0.7 0.3"; depth 40 ; unknown ; non-synonymous GL193680.1 samtools variation 494599 494599 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; synonymous GL193680.1 samtools variation 498781 498781 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193680.1 samtools variation 518830 518830 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193680.1 samtools variation 521359 521359 . . . alleles " G C"; frequencies " 0.754838709677419 0.245161290322581"; depth 155 ; unknown ; N/A GL193680.1 samtools variation 527010 527010 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL193680.1 samtools variation 528555 528555 . . . alleles " C T"; frequencies " 0.73621103117506 0.26378896882494"; depth 417 ; known ; synonymous GL193680.1 samtools variation 533140 533140 . . . alleles " G A"; frequencies " 0.408033826638478 0.591966173361522"; depth 473 ; unknown ; synonymous GL193680.1 samtools variation 533465 533465 . . . alleles " G A"; frequencies " 0.390804597701149 0.606896551724138"; depth 435 ; unknown ; synonymous GL193680.1 samtools variation 533744 533744 . . . alleles " T A"; frequencies " 0.345588235294118 0.654411764705882"; depth 136 ; unknown ; N/A GL193680.1 samtools variation 534609 534609 . . . alleles " C T"; frequencies " 0.339622641509434 0.660377358490566"; depth 583 ; unknown ; synonymous GL193681.1 samtools variation 257033 257033 . . . alleles " C T"; frequencies " 0.579310344827586 0.420689655172414"; depth 145 ; unknown ; N/A GL193681.1 samtools variation 258374 258374 . . . alleles " G T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193681.1 samtools variation 282234 282234 . . . alleles " G A"; frequencies " 0.637931034482759 0.362068965517241"; depth 58 ; known ; N/A GL193681.1 samtools variation 282326 282326 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 55 ; known ; N/A GL193681.1 samtools variation 282782 282782 . . . alleles " T C"; frequencies " 0.551020408163265 0.448979591836735"; depth 49 ; known ; N/A GL193681.1 samtools variation 283129 283129 . . . alleles " G C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL193681.1 samtools variation 284879 284879 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193681.1 samtools variation 285475 285475 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193681.1 samtools variation 285476 285476 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193681.1 samtools variation 286585 286585 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; known ; N/A GL193681.1 samtools variation 286591 286591 . . . alleles " A C"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193681.1 samtools variation 286822 286822 . . . alleles " G T"; frequencies " 0.74468085106383 0.25531914893617"; depth 47 ; known ; N/A GL193681.1 samtools variation 286938 286938 . . . alleles " G A"; frequencies " 0.203125 0.796875"; depth 64 ; known ; N/A GL193681.1 samtools variation 288811 288811 . . . alleles " G A"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; known ; N/A GL193681.1 samtools variation 289318 289318 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; known ; N/A GL193681.1 samtools variation 289573 289573 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 24 ; known ; N/A GL193681.1 samtools variation 289693 289693 . . . alleles " T G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL193681.1 samtools variation 289695 289695 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL193681.1 samtools variation 289711 289711 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL193681.1 samtools variation 290033 290033 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; known ; N/A GL193681.1 samtools variation 290321 290321 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL193681.1 samtools variation 290430 290430 . . . alleles " G T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL193681.1 samtools variation 290855 290855 . . . alleles " A T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL193681.1 samtools variation 292029 292029 . . . alleles " T C"; frequencies " 0.74 0.26"; depth 50 ; unknown ; N/A GL193681.1 samtools variation 294747 294747 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL193681.1 samtools variation 331078 331078 . . . alleles " A G"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL193681.1 samtools variation 331409 331409 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 56 ; known ; N/A GL193681.1 samtools variation 501380 501380 . . . alleles " T A"; frequencies " 0.708333333333333 0.291666666666667"; depth 48 ; unknown ; N/A GL193681.1 samtools variation 504357 504357 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL193683.1 samtools variation 124734 124734 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; synonymous GL193683.1 samtools variation 130372 130372 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193684.1 samtools variation 283326 283326 . . . alleles " A G"; frequencies " 0.302521008403361 0.697478991596639"; depth 119 ; unknown ; synonymous GL193684.1 samtools variation 284318 284318 . . . alleles " G T"; frequencies " 0.284210526315789 0.715789473684211"; depth 95 ; unknown ; non-synonymous GL193684.1 samtools variation 319024 319024 . . . alleles " T C"; frequencies " 0.27906976744186 0.720930232558139"; depth 43 ; unknown ; synonymous GL193686.1 samtools variation 165448 165448 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL193686.1 samtools variation 169140 169140 . . . alleles " C T"; frequencies " 0.63265306122449 0.36734693877551"; depth 147 ; known ; synonymous GL193686.1 samtools variation 331798 331798 . . . alleles " A G"; frequencies " 0.772151898734177 0.227848101265823"; depth 79 ; unknown ; synonymous GL193686.1 samtools variation 333917 333917 . . . alleles " T A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193686.1 samtools variation 336378 336378 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193686.1 samtools variation 351099 351099 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193686.1 samtools variation 352107 352107 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193686.1 samtools variation 352128 352128 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193686.1 samtools variation 352648 352648 . . . alleles " T G"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL193686.1 samtools variation 354147 354147 . . . alleles " C T"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL193686.1 samtools variation 354249 354249 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; N/A GL193686.1 samtools variation 355375 355375 . . . alleles " T C"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL193686.1 samtools variation 368431 368431 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193686.1 samtools variation 375351 375351 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193686.1 samtools variation 399544 399544 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; unknown ; N/A GL193686.1 samtools variation 400949 400949 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL193686.1 samtools variation 401874 401874 . . . alleles " T C"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; unknown ; N/A GL193686.1 samtools variation 434304 434304 . . . alleles " C A"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL193686.1 samtools variation 434366 434366 . . . alleles " T C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL193686.1 samtools variation 434966 434966 . . . alleles " G A"; frequencies " 0.609848484848485 0.386363636363636"; depth 264 ; unknown ; N/A GL193686.1 samtools variation 449263 449263 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; synonymous GL193686.1 samtools variation 451933 451933 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193686.1 samtools variation 454651 454651 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193686.1 samtools variation 455002 455002 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193686.1 samtools variation 482673 482673 . . . alleles " G A"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; synonymous GL193686.1 samtools variation 492961 492961 . . . alleles " A G"; frequencies " 0.537313432835821 0.462686567164179"; depth 67 ; unknown ; synonymous GL193687.1 samtools variation 342320 342320 . . . alleles " A G"; frequencies " 0.634782608695652 0.365217391304348"; depth 230 ; unknown ; synonymous GL193687.1 samtools variation 342393 342393 . . . alleles " G C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193687.1 samtools variation 343536 343536 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193687.1 samtools variation 346066 346066 . . . alleles " G A"; frequencies " 0.716666666666667 0.283333333333333"; depth 120 ; known ; N/A GL193687.1 samtools variation 346356 346356 . . . alleles " T C"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; N/A GL193687.1 samtools variation 346357 346357 . . . alleles " T C"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; N/A GL193687.1 samtools variation 346689 346689 . . . alleles " G A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL193687.1 samtools variation 347559 347559 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193687.1 samtools variation 352238 352238 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 102 ; unknown ; N/A GL193687.1 samtools variation 352565 352565 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193687.1 samtools variation 352632 352632 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193687.1 samtools variation 359739 359739 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL193687.1 samtools variation 364851 364851 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL193687.1 samtools variation 367610 367610 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 60 ; known ; N/A GL193687.1 samtools variation 367640 367640 . . . alleles " G T"; frequencies " 0.655172413793103 0.344827586206897"; depth 58 ; known ; N/A GL193687.1 samtools variation 367744 367744 . . . alleles " C T"; frequencies " 0.765625 0.234375"; depth 64 ; unknown ; N/A GL193687.1 samtools variation 371074 371074 . . . alleles " C T"; frequencies " 0.779661016949153 0.220338983050847"; depth 59 ; unknown ; N/A GL193687.1 samtools variation 371207 371207 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL193687.1 samtools variation 372269 372269 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL193687.1 samtools variation 372350 372350 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL193687.1 samtools variation 382667 382667 . . . alleles " G T"; frequencies " 0.62 0.38"; depth 50 ; unknown ; N/A GL193687.1 samtools variation 383787 383787 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; known ; N/A GL193687.1 samtools variation 390080 390080 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193687.1 samtools variation 399222 399222 . . . alleles " T G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193687.1 samtools variation 416195 416195 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 57 ; known ; N/A GL193687.1 samtools variation 417844 417844 . . . alleles " A G"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL193687.1 samtools variation 423727 423727 . . . alleles " C T"; frequencies " 0.776061776061776 0.223938223938224"; depth 259 ; unknown ; N/A GL193687.1 samtools variation 423917 423917 . . . alleles " T C"; frequencies " 0.420289855072464 0.579710144927536"; depth 69 ; unknown ; N/A GL193687.1 samtools variation 426118 426118 . . . alleles " A G"; frequencies " 0.623015873015873 0.376984126984127"; depth 252 ; unknown ; N/A GL193688.1 samtools variation 23876 23876 . . . alleles " T A"; frequencies " 0.402173913043478 0.597826086956522"; depth 92 ; known ; N/A GL193688.1 samtools variation 34520 34520 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193688.1 samtools variation 34865 34865 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193688.1 samtools variation 36969 36969 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193688.1 samtools variation 36977 36977 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193688.1 samtools variation 37519 37519 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; known ; N/A GL193688.1 samtools variation 37627 37627 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL193688.1 samtools variation 38526 38526 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 24 ; known ; N/A GL193688.1 samtools variation 38861 38861 . . . alleles " T C"; frequencies " 0.450980392156863 0.549019607843137"; depth 51 ; known ; N/A GL193688.1 samtools variation 39435 39435 . . . alleles " A G"; frequencies " 0.404761904761905 0.595238095238095"; depth 84 ; known ; N/A GL193688.1 samtools variation 39503 39503 . . . alleles " G A"; frequencies " 0.468085106382979 0.531914893617021"; depth 94 ; known ; N/A GL193688.1 samtools variation 39769 39769 . . . alleles " C A"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193688.1 samtools variation 40455 40455 . . . alleles " G C"; frequencies " 0.553571428571429 0.446428571428571"; depth 56 ; known ; N/A GL193688.1 samtools variation 41359 41359 . . . alleles " C T"; frequencies " 0.568106312292359 0.431893687707641"; depth 301 ; known ; N/A GL193688.1 samtools variation 41499 41499 . . . alleles " G C"; frequencies " 0.604444444444444 0.395555555555556"; depth 225 ; known ; N/A GL193688.1 samtools variation 41669 41669 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 102 ; unknown ; N/A GL193688.1 samtools variation 41670 41670 . . . alleles " C T"; frequencies " 0.682242990654206 0.317757009345794"; depth 107 ; unknown ; N/A GL193688.1 samtools variation 41738 41738 . . . alleles " G T"; frequencies " 0.520547945205479 0.479452054794521"; depth 146 ; known ; synonymous GL193688.1 samtools variation 43925 43925 . . . alleles " G T"; frequencies " 0.462686567164179 0.537313432835821"; depth 402 ; known ; synonymous GL193688.1 samtools variation 44261 44261 . . . alleles " T C"; frequencies " 0.458823529411765 0.541176470588235"; depth 85 ; known ; synonymous GL193688.1 samtools variation 46853 46853 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193688.1 samtools variation 48534 48534 . . . alleles " T A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193688.1 samtools variation 55323 55323 . . . alleles " C G"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL193688.1 samtools variation 66774 66774 . . . alleles " G C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193688.1 samtools variation 72045 72045 . . . alleles " C A"; frequencies " 0.477272727272727 0.522727272727273"; depth 44 ; known ; N/A GL193688.1 samtools variation 72646 72646 . . . alleles " G A"; frequencies " 0.429824561403509 0.570175438596491"; depth 228 ; known ; N/A GL193688.1 samtools variation 72848 72848 . . . alleles " A G"; frequencies " 0.741935483870968 0.258064516129032"; depth 93 ; unknown ; N/A GL193688.1 samtools variation 121707 121707 . . . alleles " T C"; frequencies " 0.793650793650794 0.206349206349206"; depth 63 ; unknown ; synonymous GL193688.1 samtools variation 276116 276116 . . . alleles " T G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL193688.1 samtools variation 327268 327268 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193688.1 samtools variation 328001 328001 . . . alleles " T A"; frequencies " 0.34375 0.65625"; depth 64 ; known ; N/A GL193688.1 samtools variation 329945 329945 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL193688.1 samtools variation 330094 330094 . . . alleles " C T"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; N/A GL193688.1 samtools variation 333421 333421 . . . alleles " C T"; frequencies " 0.268292682926829 0.731707317073171"; depth 41 ; known ; N/A GL193688.1 samtools variation 391446 391446 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; synonymous GL193688.1 samtools variation 393635 393635 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; synonymous GL193688.1 samtools variation 401568 401568 . . . alleles " G C"; frequencies " 0.3125 0.6875"; depth 16 ; known ; synonymous GL193688.1 samtools variation 401885 401885 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; known ; synonymous GL193688.1 samtools variation 469182 469182 . . . alleles " C T"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL193688.1 samtools variation 469229 469229 . . . alleles " A G"; frequencies " 0.744186046511628 0.255813953488372"; depth 43 ; unknown ; N/A GL193688.1 samtools variation 472130 472130 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL193688.1 samtools variation 474020 474020 . . . alleles " C G"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; unknown ; synonymous GL193689.1 samtools variation 249679 249679 . . . alleles " A C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193689.1 samtools variation 334645 334645 . . . alleles " C T"; frequencies " 0.787878787878788 0.212121212121212"; depth 99 ; unknown ; non-synonymous GL193690.1 samtools variation 122951 122951 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193690.1 samtools variation 122952 122952 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193690.1 samtools variation 157565 157565 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193690.1 samtools variation 167600 167600 . . . alleles " G A"; frequencies " 0.52112676056338 0.47887323943662"; depth 1704 ; known ; synonymous GL193690.1 samtools variation 171197 171197 . . . alleles " A G"; frequencies " 0.386255924170616 0.613744075829384"; depth 422 ; known ; N/A GL193695.1 samtools variation 404647 404647 . . . alleles " G A"; frequencies " 0.634146341463415 0.365853658536585"; depth 123 ; unknown ; N/A GL193695.1 samtools variation 405025 405025 . . . alleles " A G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; known ; N/A GL193698.1 samtools variation 99976 99976 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193698.1 samtools variation 111109 111109 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193698.1 samtools variation 116743 116743 . . . alleles " C T"; frequencies " 0.547945205479452 0.452054794520548"; depth 73 ; known ; N/A GL193698.1 samtools variation 120265 120265 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193698.1 samtools variation 120617 120617 . . . alleles " C T"; frequencies " 0.367647058823529 0.632352941176471"; depth 68 ; known ; N/A GL193698.1 samtools variation 127632 127632 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL193698.1 samtools variation 129157 129157 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; known ; N/A GL193698.1 samtools variation 145634 145634 . . . alleles " T A"; frequencies " 0.490066225165563 0.509933774834437"; depth 151 ; known ; non-synonymous GL193698.1 samtools variation 176603 176603 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 56 ; known ; N/A GL193698.1 samtools variation 258904 258904 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193698.1 samtools variation 258914 258914 . . . alleles " C A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193700.1 samtools variation 245952 245952 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193700.1 samtools variation 313073 313073 . . . alleles " G A"; frequencies " 0.472222222222222 0.527777777777778"; depth 72 ; unknown ; synonymous GL193700.1 samtools variation 314348 314348 . . . alleles " G A"; frequencies " 0.575757575757576 0.424242424242424"; depth 66 ; unknown ; synonymous GL193700.1 samtools variation 380669 380669 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193701.1 samtools variation 131051 131051 . . . alleles " C T"; frequencies " 0.749271137026239 0.250728862973761"; depth 343 ; unknown ; N/A GL193701.1 samtools variation 131611 131611 . . . alleles " C A"; frequencies " 0.648286140089419 0.351713859910581"; depth 671 ; unknown ; N/A GL193701.1 samtools variation 132896 132896 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193701.1 samtools variation 376475 376475 . . . alleles " G C"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; unknown ; non-synonymous GL193701.1 samtools variation 385054 385054 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; non-synonymous GL193701.1 samtools variation 440521 440521 . . . alleles " G T"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; unknown ; N/A GL193701.1 samtools variation 446951 446951 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 33 ; unknown ; N/A GL193702.1 samtools variation 257873 257873 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; synonymous GL193702.1 samtools variation 260065 260065 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; synonymous GL193703.1 samtools variation 13167 13167 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; non-synonymous GL193703.1 samtools variation 100719 100719 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193703.1 samtools variation 100829 100829 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193703.1 samtools variation 129768 129768 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193703.1 samtools variation 172974 172974 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; synonymous GL193703.1 samtools variation 232937 232937 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193703.1 samtools variation 233040 233040 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193703.1 samtools variation 236453 236453 . . . alleles " A G"; frequencies " 0.641791044776119 0.358208955223881"; depth 67 ; unknown ; N/A GL193703.1 samtools variation 237309 237309 . . . alleles " T C"; frequencies " 0.43956043956044 0.56043956043956"; depth 91 ; unknown ; N/A GL193703.1 samtools variation 238004 238004 . . . alleles " A T"; frequencies " 0.480874316939891 0.519125683060109"; depth 183 ; unknown ; N/A GL193703.1 samtools variation 238829 238829 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193703.1 samtools variation 240155 240155 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL193703.1 samtools variation 240158 240158 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL193703.1 samtools variation 248033 248033 . . . alleles " C A"; frequencies " 0.581081081081081 0.405405405405405"; depth 74 ; unknown ; synonymous GL193703.1 samtools variation 257152 257152 . . . alleles " T C"; frequencies " 0.451612903225806 0.548387096774194"; depth 93 ; unknown ; synonymous GL193703.1 samtools variation 258442 258442 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 108 ; unknown ; non-synonymous GL193703.1 samtools variation 294637 294637 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193703.1 samtools variation 297977 297977 . . . alleles " C T"; frequencies " 0.660377358490566 0.339622641509434"; depth 53 ; unknown ; N/A GL193703.1 samtools variation 341150 341150 . . . alleles " A T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193703.1 samtools variation 342136 342136 . . . alleles " G T"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL193703.1 samtools variation 342679 342679 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193703.1 samtools variation 351128 351128 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 44 ; unknown ; N/A GL193703.1 samtools variation 353255 353255 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193703.1 samtools variation 354010 354010 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193703.1 samtools variation 354824 354824 . . . alleles " A G"; frequencies " 0.779661016949153 0.220338983050847"; depth 59 ; unknown ; N/A GL193703.1 samtools variation 355819 355819 . . . alleles " T A"; frequencies " 0.318181818181818 0.681818181818182"; depth 44 ; unknown ; N/A GL193703.1 samtools variation 357890 357890 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL193703.1 samtools variation 358418 358418 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193703.1 samtools variation 358577 358577 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL193703.1 samtools variation 361331 361331 . . . alleles " G A"; frequencies " 0.251497005988024 0.748502994011976"; depth 167 ; known ; N/A GL193703.1 samtools variation 362041 362041 . . . alleles " G A"; frequencies " 0.675438596491228 0.324561403508772"; depth 114 ; known ; N/A GL193703.1 samtools variation 362195 362195 . . . alleles " A C"; frequencies " 0.391003460207612 0.605536332179931"; depth 289 ; known ; N/A GL193703.1 samtools variation 362275 362275 . . . alleles " A G"; frequencies " 0.367601246105919 0.632398753894081"; depth 321 ; known ; N/A GL193703.1 samtools variation 362343 362343 . . . alleles " T C"; frequencies " 0.698324022346369 0.301675977653631"; depth 179 ; known ; N/A GL193703.1 samtools variation 362361 362361 . . . alleles " T C"; frequencies " 0.722772277227723 0.277227722772277"; depth 202 ; known ; N/A GL193703.1 samtools variation 362417 362417 . . . alleles " A G"; frequencies " 0.232209737827715 0.767790262172285"; depth 267 ; known ; N/A GL193703.1 samtools variation 362491 362491 . . . alleles " T C"; frequencies " 0.781569965870307 0.218430034129693"; depth 293 ; known ; N/A GL193703.1 samtools variation 362650 362650 . . . alleles " G A"; frequencies " 0.283582089552239 0.716417910447761"; depth 67 ; known ; N/A GL193703.1 samtools variation 363208 363208 . . . alleles " T C"; frequencies " 0.28 0.72"; depth 75 ; known ; N/A GL193703.1 samtools variation 363375 363375 . . . alleles " G T"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; unknown ; N/A GL193703.1 samtools variation 363748 363748 . . . alleles " T C"; frequencies " 0.700934579439252 0.299065420560748"; depth 214 ; known ; N/A GL193703.1 samtools variation 363979 363979 . . . alleles " A G"; frequencies " 0.33433734939759 0.66566265060241"; depth 332 ; known ; N/A GL193703.1 samtools variation 364486 364486 . . . alleles " T G"; frequencies " 0.54639175257732 0.45360824742268"; depth 97 ; known ; N/A GL193703.1 samtools variation 365008 365008 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 78 ; known ; N/A GL193703.1 samtools variation 365156 365156 . . . alleles " G A"; frequencies " 0.27891156462585 0.72108843537415"; depth 147 ; unknown ; N/A GL193703.1 samtools variation 365158 365158 . . . alleles " A G"; frequencies " 0.282894736842105 0.717105263157895"; depth 152 ; unknown ; N/A GL193703.1 samtools variation 365281 365281 . . . alleles " G T"; frequencies " 0.797752808988764 0.202247191011236"; depth 89 ; unknown ; N/A GL193703.1 samtools variation 365471 365471 . . . alleles " T C"; frequencies " 0.660098522167488 0.339901477832512"; depth 203 ; known ; N/A GL193703.1 samtools variation 365563 365563 . . . alleles " T C"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; N/A GL193703.1 samtools variation 365564 365564 . . . alleles " G A"; frequencies " 0.513513513513513 0.486486486486487"; depth 37 ; unknown ; N/A GL193703.1 samtools variation 365932 365932 . . . alleles " G A"; frequencies " 0.65625 0.34375"; depth 32 ; known ; N/A GL193703.1 samtools variation 366966 366966 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 28 ; known ; N/A GL193703.1 samtools variation 368045 368045 . . . alleles " C G"; frequencies " 0.489795918367347 0.510204081632653"; depth 49 ; known ; N/A GL193703.1 samtools variation 368247 368247 . . . alleles " G A"; frequencies " 0.711538461538462 0.288461538461538"; depth 52 ; known ; N/A GL193703.1 samtools variation 368538 368538 . . . alleles " G A"; frequencies " 0.226415094339623 0.773584905660377"; depth 106 ; known ; N/A GL193703.1 samtools variation 368620 368620 . . . alleles " T C"; frequencies " 0.239130434782609 0.760869565217391"; depth 92 ; known ; N/A GL193703.1 samtools variation 368649 368649 . . . alleles " T C"; frequencies " 0.7375 0.2625"; depth 80 ; known ; N/A GL193703.1 samtools variation 368699 368699 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL193703.1 samtools variation 369172 369172 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193703.1 samtools variation 374172 374172 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193703.1 samtools variation 374638 374638 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193703.1 samtools variation 378941 378941 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193703.1 samtools variation 379584 379584 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193703.1 samtools variation 380063 380063 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; known ; N/A GL193703.1 samtools variation 381411 381411 . . . alleles " G A"; frequencies " 0.540983606557377 0.459016393442623"; depth 61 ; known ; N/A GL193703.1 samtools variation 382910 382910 . . . alleles " C A"; frequencies " 0.657258064516129 0.342741935483871"; depth 992 ; unknown ; non-synonymous GL193703.1 samtools variation 384731 384731 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 36 ; unknown ; N/A GL193703.1 samtools variation 384741 384741 . . . alleles " A G"; frequencies " 0.341463414634146 0.658536585365854"; depth 41 ; unknown ; N/A GL193703.1 samtools variation 387214 387214 . . . alleles " C T"; frequencies " 0.743119266055046 0.256880733944954"; depth 109 ; unknown ; N/A GL193703.1 samtools variation 388440 388440 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; N/A GL193703.1 samtools variation 389428 389428 . . . alleles " C T"; frequencies " 0.271428571428571 0.728571428571429"; depth 70 ; unknown ; N/A GL193703.1 samtools variation 389543 389543 . . . alleles " G A"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL193703.1 samtools variation 392050 392050 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; unknown ; N/A GL193703.1 samtools variation 392137 392137 . . . alleles " G A"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; N/A GL193703.1 samtools variation 410916 410916 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL193703.1 samtools variation 412234 412234 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193703.1 samtools variation 412288 412288 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193704.1 samtools variation 55217 55217 . . . alleles " C T"; frequencies " 0.798165137614679 0.201834862385321"; depth 545 ; unknown ; N/A GL193704.1 samtools variation 56855 56855 . . . alleles " C A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193704.1 samtools variation 58337 58337 . . . alleles " C T"; frequencies " 0.770992366412214 0.2264631043257"; depth 393 ; unknown ; synonymous GL193706.1 samtools variation 422584 422584 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 75 ; unknown ; N/A GL193707.1 samtools variation 98475 98475 . . . alleles " T C"; frequencies " 0.223300970873786 0.776699029126214"; depth 103 ; known ; N/A GL193707.1 samtools variation 120177 120177 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 57 ; unknown ; N/A GL193707.1 samtools variation 130262 130262 . . . alleles " G C"; frequencies " 0.681089743589744 0.314102564102564"; depth 624 ; unknown ; non-synonymous GL193707.1 samtools variation 203821 203821 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193707.1 samtools variation 220551 220551 . . . alleles " T C"; frequencies " 0.325 0.675"; depth 40 ; known ; N/A GL193707.1 samtools variation 258145 258145 . . . alleles " G C"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL193707.1 samtools variation 260937 260937 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193707.1 samtools variation 260998 260998 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193707.1 samtools variation 279937 279937 . . . alleles " G A"; frequencies " 0.746478873239437 0.253521126760563"; depth 71 ; unknown ; N/A GL193707.1 samtools variation 300746 300746 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193707.1 samtools variation 305717 305717 . . . alleles " A G"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL193707.1 samtools variation 322492 322492 . . . alleles " A G"; frequencies " 0.793650793650794 0.206349206349206"; depth 63 ; unknown ; N/A GL193707.1 samtools variation 325766 325766 . . . alleles " C T"; frequencies " 0.787234042553192 0.212765957446809"; depth 94 ; unknown ; N/A GL193710.1 samtools variation 131258 131258 . . . alleles " T C"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL193710.1 samtools variation 131259 131259 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193710.1 samtools variation 411596 411596 . . . alleles " G A"; frequencies " 0.317073170731707 0.682926829268293"; depth 41 ; unknown ; N/A GL193710.1 samtools variation 411794 411794 . . . alleles " G A"; frequencies " 0.405797101449275 0.594202898550725"; depth 69 ; known ; N/A GL193710.1 samtools variation 414650 414650 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193713.1 samtools variation 336672 336672 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193713.1 samtools variation 340213 340213 . . . alleles " G T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193713.1 samtools variation 340223 340223 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193713.1 samtools variation 509986 509986 . . . alleles " A G"; frequencies " 0.210526315789474 0.789473684210526"; depth 38 ; known ; N/A GL193713.1 samtools variation 513167 513167 . . . alleles " C G"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL193713.1 samtools variation 513445 513445 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193713.1 samtools variation 514669 514669 . . . alleles " C G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL193713.1 samtools variation 514688 514688 . . . alleles " C A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193713.1 samtools variation 525299 525299 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193713.1 samtools variation 526227 526227 . . . alleles " C T"; frequencies " 0.622093023255814 0.377906976744186"; depth 172 ; unknown ; synonymous GL193714.1 samtools variation 206740 206740 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; non-synonymous GL193716.1 samtools variation 73325 73325 . . . alleles " A C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193716.1 samtools variation 100576 100576 . . . alleles " A G"; frequencies " 0.646234676007005 0.353765323992995"; depth 571 ; known ; N/A GL193716.1 samtools variation 101290 101290 . . . alleles " A G"; frequencies " 0.619883040935672 0.380116959064327"; depth 513 ; known ; N/A GL193716.1 samtools variation 101520 101520 . . . alleles " T G"; frequencies " 0.411873840445269 0.588126159554731"; depth 539 ; known ; N/A GL193716.1 samtools variation 101630 101630 . . . alleles " T G"; frequencies " 0.428571428571429 0.571428571428571"; depth 350 ; known ; N/A GL193716.1 samtools variation 108603 108603 . . . alleles " A G"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL193716.1 samtools variation 118639 118639 . . . alleles " A T"; frequencies " 0.420944558521561 0.579055441478439"; depth 487 ; known ; non-synonymous GL193716.1 samtools variation 128945 128945 . . . alleles " T G"; frequencies " 0.490384615384615 0.509615384615385"; depth 312 ; unknown ; non-synonymous GL193716.1 samtools variation 137710 137710 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 176 ; known ; synonymous GL193716.1 samtools variation 334400 334400 . . . alleles " C T"; frequencies " 0.551446945337621 0.448553054662379"; depth 622 ; known ; N/A GL193716.1 samtools variation 475441 475441 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193717.1 samtools variation 75221 75221 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193717.1 samtools variation 82780 82780 . . . alleles " G A"; frequencies " 0.773584905660377 0.226415094339623"; depth 159 ; unknown ; N/A GL193718.1 samtools variation 975 975 . . . alleles " T G"; frequencies " 0.479166666666667 0.520833333333333"; depth 48 ; known ; N/A GL193718.1 samtools variation 1054 1054 . . . alleles " A G"; frequencies " 0.661290322580645 0.338709677419355"; depth 62 ; known ; N/A GL193718.1 samtools variation 7096 7096 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL193718.1 samtools variation 15644 15644 . . . alleles " A G"; frequencies " 0.204188481675393 0.795811518324607"; depth 382 ; known ; synonymous GL193718.1 samtools variation 20693 20693 . . . alleles " C T"; frequencies " 0.745945945945946 0.254054054054054"; depth 185 ; known ; non-synonymous GL193718.1 samtools variation 103939 103939 . . . alleles " T G"; frequencies " 0.646341463414634 0.353658536585366"; depth 82 ; unknown ; non-synonymous GL193718.1 samtools variation 115452 115452 . . . alleles " C T"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL193718.1 samtools variation 168657 168657 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; non-synonymous GL193718.1 samtools variation 207588 207588 . . . alleles " T C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; known ; synonymous GL193718.1 samtools variation 208352 208352 . . . alleles " T C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; synonymous GL193718.1 samtools variation 221215 221215 . . . alleles " A C"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL193718.1 samtools variation 231453 231453 . . . alleles " A G"; frequencies " 0.249466950959488 0.750533049040512"; depth 469 ; unknown ; non-synonymous GL193718.1 samtools variation 232880 232880 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL193718.1 samtools variation 233700 233700 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 55 ; known ; N/A GL193718.1 samtools variation 234798 234798 . . . alleles " A G"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; known ; N/A GL193718.1 samtools variation 513948 513948 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193723.1 samtools variation 259693 259693 . . . alleles " A C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL193723.1 samtools variation 320287 320287 . . . alleles " A G"; frequencies " 0.295081967213115 0.704918032786885"; depth 183 ; unknown ; synonymous GL193723.1 samtools variation 320290 320290 . . . alleles " G A"; frequencies " 0.294444444444444 0.705555555555556"; depth 180 ; unknown ; synonymous GL193723.1 samtools variation 322044 322044 . . . alleles " A G"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; known ; N/A GL193723.1 samtools variation 322155 322155 . . . alleles " G A"; frequencies " 0.632850241545894 0.367149758454106"; depth 207 ; unknown ; N/A GL193723.1 samtools variation 340803 340803 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; non-synonymous GL193723.1 samtools variation 387270 387270 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL193724.1 samtools variation 8153 8153 . . . alleles " G T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL193724.1 samtools variation 15362 15362 . . . alleles " T G"; frequencies " 0.756521739130435 0.243478260869565"; depth 115 ; unknown ; N/A GL193724.1 samtools variation 21957 21957 . . . alleles " T C"; frequencies " 0.594339622641509 0.405660377358491"; depth 106 ; unknown ; N/A GL193724.1 samtools variation 85900 85900 . . . alleles " A G"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; unknown ; N/A GL193724.1 samtools variation 88343 88343 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193724.1 samtools variation 106667 106667 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 40 ; unknown ; N/A GL193724.1 samtools variation 184007 184007 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL193724.1 samtools variation 187915 187915 . . . alleles " A T"; frequencies " 0.796296296296296 0.203703703703704"; depth 54 ; unknown ; N/A GL193724.1 samtools variation 193418 193418 . . . alleles " C T"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL193724.1 samtools variation 214863 214863 . . . alleles " C T"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; known ; synonymous GL193724.1 samtools variation 233690 233690 . . . alleles " T A"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; unknown ; N/A GL193724.1 samtools variation 255270 255270 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 34 ; unknown ; synonymous GL193724.1 samtools variation 271213 271213 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 39 ; unknown ; N/A GL193724.1 samtools variation 313785 313785 . . . alleles " A G"; frequencies " 0.794466403162055 0.205533596837945"; depth 253 ; unknown ; synonymous GL193724.1 samtools variation 340329 340329 . . . alleles " C T"; frequencies " 0.767123287671233 0.232876712328767"; depth 73 ; unknown ; non-synonymous GL193724.1 samtools variation 340406 340406 . . . alleles " A G"; frequencies " 0.746113989637306 0.253886010362694"; depth 193 ; unknown ; synonymous GL193724.1 samtools variation 347740 347740 . . . alleles " A G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193724.1 samtools variation 357450 357450 . . . alleles " T C"; frequencies " 0.264150943396226 0.735849056603774"; depth 53 ; unknown ; N/A GL193724.1 samtools variation 358322 358322 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 55 ; unknown ; N/A GL193724.1 samtools variation 359821 359821 . . . alleles " C T"; frequencies " 0.781893004115226 0.218106995884774"; depth 243 ; unknown ; N/A GL193724.1 samtools variation 369465 369465 . . . alleles " A G"; frequencies " 0.690322580645161 0.309677419354839"; depth 155 ; unknown ; non-synonymous GL193724.1 samtools variation 371422 371422 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 25 ; unknown ; N/A GL193724.1 samtools variation 392922 392922 . . . alleles " A G"; frequencies " 0.585956416464891 0.414043583535109"; depth 413 ; unknown ; non-synonymous GL193724.1 samtools variation 393072 393072 . . . alleles " T G"; frequencies " 0.401486988847584 0.598513011152416"; depth 538 ; unknown ; non-synonymous GL193724.1 samtools variation 393079 393079 . . . alleles " G A"; frequencies " 0.761996161228407 0.238003838771593"; depth 521 ; unknown ; non-synonymous GL193724.1 samtools variation 393145 393145 . . . alleles " C G"; frequencies " 0.634496919917864 0.365503080082136"; depth 487 ; known ; non-synonymous GL193724.1 samtools variation 393175 393175 . . . alleles " A G"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL193724.1 samtools variation 393545 393545 . . . alleles " G A"; frequencies " 0.546920821114369 0.45307917888563"; depth 682 ; unknown ; non-synonymous GL193724.1 samtools variation 393861 393861 . . . alleles " A G"; frequencies " 0.337922403003755 0.662077596996245"; depth 799 ; unknown ; synonymous GL193724.1 samtools variation 393954 393954 . . . alleles " T C"; frequencies " 0.737758433079434 0.262241566920566"; depth 919 ; unknown ; synonymous GL193724.1 samtools variation 393958 393958 . . . alleles " A G"; frequencies " 0.735644637053088 0.264355362946912"; depth 923 ; unknown ; non-synonymous GL193724.1 samtools variation 394590 394590 . . . alleles " G A"; frequencies " 0.323037323037323 0.676962676962677"; depth 777 ; unknown ; non-synonymous GL193724.1 samtools variation 394775 394775 . . . alleles " T C"; frequencies " 0.365853658536585 0.634146341463415"; depth 82 ; unknown ; N/A GL193724.1 samtools variation 400052 400052 . . . alleles " G A"; frequencies " 0.773533424283765 0.226466575716235"; depth 2932 ; unknown ; synonymous GL193724.1 samtools variation 403549 403549 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193724.1 samtools variation 405270 405270 . . . alleles " A G"; frequencies " 0.657142857142857 0.314285714285714"; depth 35 ; unknown ; N/A GL193724.1 samtools variation 405271 405271 . . . alleles " C T"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL193724.1 samtools variation 412617 412617 . . . alleles " C G"; frequencies " 0.345794392523364 0.654205607476635"; depth 321 ; unknown ; non-synonymous GL193724.1 samtools variation 412630 412630 . . . alleles " A C"; frequencies " 0.456834532374101 0.543165467625899"; depth 278 ; unknown ; non-synonymous GL193724.1 samtools variation 412905 412905 . . . alleles " T C"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; unknown ; non-synonymous GL193724.1 samtools variation 412906 412906 . . . alleles " G T"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; unknown ; N/A GL193724.1 samtools variation 413896 413896 . . . alleles " T C"; frequencies " 0.702970297029703 0.297029702970297"; depth 101 ; known ; non-synonymous GL193724.1 samtools variation 413992 413992 . . . alleles " C T"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; known ; N/A GL193724.1 samtools variation 414114 414114 . . . alleles " G A"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; known ; N/A GL193724.1 samtools variation 414221 414221 . . . alleles " G A"; frequencies " 0.43 0.57"; depth 100 ; known ; non-synonymous GL193724.1 samtools variation 418038 418038 . . . alleles " T G"; frequencies " 0.518218623481781 0.481781376518219"; depth 247 ; unknown ; synonymous GL193724.1 samtools variation 418042 418042 . . . alleles " C T"; frequencies " 0.627118644067797 0.372881355932203"; depth 236 ; unknown ; synonymous GL193724.1 samtools variation 418065 418065 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 364 ; unknown ; non-synonymous GL193724.1 samtools variation 418110 418110 . . . alleles " G C"; frequencies " 0.423645320197044 0.576354679802956"; depth 406 ; known ; non-synonymous GL193724.1 samtools variation 418562 418562 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 85 ; unknown ; non-synonymous GL193724.1 samtools variation 418648 418648 . . . alleles " A T"; frequencies " 0.734513274336283 0.265486725663717"; depth 113 ; unknown ; non-synonymous GL193724.1 samtools variation 419137 419137 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 126 ; unknown ; N/A GL193724.1 samtools variation 419972 419972 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL193724.1 samtools variation 420051 420051 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 65 ; unknown ; N/A GL193724.1 samtools variation 420543 420543 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193724.1 samtools variation 420585 420585 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193724.1 samtools variation 423328 423328 . . . alleles " C G"; frequencies " 0.565217391304348 0.434782608695652"; depth 46 ; unknown ; N/A GL193724.1 samtools variation 426324 426324 . . . alleles " C G"; frequencies " 0.466666666666667 0.533333333333333"; depth 60 ; unknown ; N/A GL193724.1 samtools variation 426649 426649 . . . alleles " T G"; frequencies " 0.795081967213115 0.204918032786885"; depth 122 ; unknown ; N/A GL193724.1 samtools variation 427503 427503 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL193724.1 samtools variation 427507 427507 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL193724.1 samtools variation 431389 431389 . . . alleles " G A"; frequencies " 0.692429022082019 0.307570977917981"; depth 634 ; unknown ; N/A GL193724.1 samtools variation 435935 435935 . . . alleles " A G"; frequencies " 0.489473684210526 0.510526315789474"; depth 190 ; unknown ; N/A GL193724.1 samtools variation 437808 437808 . . . alleles " G A"; frequencies " 0.243718592964824 0.756281407035176"; depth 398 ; unknown ; N/A GL193724.1 samtools variation 438460 438460 . . . alleles " T G"; frequencies " 0.357142857142857 0.642857142857143"; depth 42 ; unknown ; N/A GL193724.1 samtools variation 438487 438487 . . . alleles " A G"; frequencies " 0.452380952380952 0.547619047619048"; depth 42 ; unknown ; N/A GL193724.1 samtools variation 439338 439338 . . . alleles " T G"; frequencies " 0.650793650793651 0.349206349206349"; depth 63 ; unknown ; N/A GL193724.1 samtools variation 439534 439534 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193724.1 samtools variation 439768 439768 . . . alleles " C G"; frequencies " 0.768518518518518 0.231481481481481"; depth 108 ; unknown ; N/A GL193724.1 samtools variation 439846 439846 . . . alleles " C A"; frequencies " 0.51219512195122 0.48780487804878"; depth 41 ; unknown ; N/A GL193724.1 samtools variation 439876 439876 . . . alleles " G T"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL193724.1 samtools variation 439955 439955 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 32 ; unknown ; N/A GL193724.1 samtools variation 440015 440015 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL193724.1 samtools variation 440098 440098 . . . alleles " C T"; frequencies " 0.486486486486487 0.513513513513513"; depth 37 ; unknown ; N/A GL193724.1 samtools variation 440133 440133 . . . alleles " G T"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL193724.1 samtools variation 441158 441158 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193724.1 samtools variation 445603 445603 . . . alleles " A G"; frequencies " 0.528455284552846 0.471544715447154"; depth 123 ; unknown ; N/A GL193724.1 samtools variation 445950 445950 . . . alleles " A C"; frequencies " 0.572815533980582 0.427184466019417"; depth 103 ; unknown ; N/A GL193724.1 samtools variation 446274 446274 . . . alleles " A G"; frequencies " 0.515625 0.484375"; depth 64 ; unknown ; N/A GL193724.1 samtools variation 446365 446365 . . . alleles " C T"; frequencies " 0.552941176470588 0.447058823529412"; depth 170 ; unknown ; N/A GL193724.1 samtools variation 448001 448001 . . . alleles " T C"; frequencies " 0.644736842105263 0.355263157894737"; depth 76 ; unknown ; N/A GL193724.1 samtools variation 448142 448142 . . . alleles " G A"; frequencies " 0.548872180451128 0.451127819548872"; depth 133 ; unknown ; N/A GL193724.1 samtools variation 448700 448700 . . . alleles " C T"; frequencies " 0.596330275229358 0.403669724770642"; depth 109 ; unknown ; N/A GL193724.1 samtools variation 450474 450474 . . . alleles " G A"; frequencies " 0.729166666666667 0.270833333333333"; depth 96 ; unknown ; N/A GL193724.1 samtools variation 450503 450503 . . . alleles " G C"; frequencies " 0.773584905660377 0.207547169811321"; depth 53 ; unknown ; N/A GL193724.1 samtools variation 450716 450716 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 42 ; unknown ; N/A GL193724.1 samtools variation 453005 453005 . . . alleles " A G"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL193724.1 samtools variation 453365 453365 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL193724.1 samtools variation 454765 454765 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193724.1 samtools variation 456774 456774 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193724.1 samtools variation 459327 459327 . . . alleles " A G"; frequencies " 0.383720930232558 0.616279069767442"; depth 86 ; unknown ; N/A GL193724.1 samtools variation 460208 460208 . . . alleles " C A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL193724.1 samtools variation 464733 464733 . . . alleles " C T"; frequencies " 0.534883720930233 0.465116279069767"; depth 43 ; unknown ; N/A GL193724.1 samtools variation 468179 468179 . . . alleles " T G"; frequencies " 0.782258064516129 0.217741935483871"; depth 124 ; unknown ; N/A GL193724.1 samtools variation 468216 468216 . . . alleles " C A"; frequencies " 0.776923076923077 0.223076923076923"; depth 130 ; unknown ; N/A GL193724.1 samtools variation 468591 468591 . . . alleles " C T"; frequencies " 0.432203389830508 0.567796610169492"; depth 236 ; unknown ; N/A GL193724.1 samtools variation 469372 469372 . . . alleles " G A"; frequencies " 0.725609756097561 0.274390243902439"; depth 328 ; unknown ; N/A GL193724.1 samtools variation 470866 470866 . . . alleles " G A"; frequencies " 0.763636363636364 0.236363636363636"; depth 55 ; unknown ; N/A GL193724.1 samtools variation 471047 471047 . . . alleles " G A"; frequencies " 0.470588235294118 0.524064171122995"; depth 187 ; unknown ; synonymous GL193724.1 samtools variation 472716 472716 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193724.1 samtools variation 472843 472843 . . . alleles " C T"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; unknown ; N/A GL193724.1 samtools variation 473042 473042 . . . alleles " C A"; frequencies " 0.730769230769231 0.269230769230769"; depth 52 ; unknown ; N/A GL193724.1 samtools variation 473885 473885 . . . alleles " C T"; frequencies " 0.475409836065574 0.524590163934426"; depth 61 ; unknown ; N/A GL193724.1 samtools variation 473941 473941 . . . alleles " G C"; frequencies " 0.728813559322034 0.271186440677966"; depth 59 ; unknown ; N/A GL193724.1 samtools variation 474092 474092 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 68 ; unknown ; N/A GL193724.1 samtools variation 474488 474488 . . . alleles " C G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193724.1 samtools variation 475001 475001 . . . alleles " G C"; frequencies " 0.473684210526316 0.526315789473684"; depth 57 ; unknown ; non-synonymous GL193724.1 samtools variation 475129 475129 . . . alleles " G A"; frequencies " 0.560606060606061 0.439393939393939"; depth 66 ; unknown ; synonymous GL193724.1 samtools variation 499136 499136 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193726.1 samtools variation 64104 64104 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193726.1 samtools variation 171343 171343 . . . alleles " T A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193729.1 samtools variation 368805 368805 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193729.1 samtools variation 372136 372136 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193729.1 samtools variation 420910 420910 . . . alleles " A C"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193729.1 samtools variation 421321 421321 . . . alleles " A G"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL193729.1 samtools variation 422330 422330 . . . alleles " G T"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; known ; N/A GL193729.1 samtools variation 426084 426084 . . . alleles " C T"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; unknown ; N/A GL193729.1 samtools variation 469979 469979 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 77 ; known ; synonymous GL193729.1 samtools variation 471283 471283 . . . alleles " C T"; frequencies " 0.744444444444444 0.255555555555556"; depth 90 ; known ; synonymous GL193730.1 samtools variation 4020 4020 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193730.1 samtools variation 4142 4142 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193730.1 samtools variation 4151 4151 . . . alleles " A G"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL193730.1 samtools variation 4157 4157 . . . alleles " A T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193730.1 samtools variation 4236 4236 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193730.1 samtools variation 4325 4325 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193730.1 samtools variation 4624 4624 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193730.1 samtools variation 7258 7258 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193730.1 samtools variation 7319 7319 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193730.1 samtools variation 7361 7361 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193730.1 samtools variation 7464 7464 . . . alleles " A G"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; unknown ; N/A GL193730.1 samtools variation 7631 7631 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193730.1 samtools variation 7674 7674 . . . alleles " C G"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193730.1 samtools variation 19444 19444 . . . alleles " T A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL193730.1 samtools variation 19480 19480 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193730.1 samtools variation 22487 22487 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193730.1 samtools variation 22842 22842 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193730.1 samtools variation 22953 22953 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL193730.1 samtools variation 22997 22997 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL193730.1 samtools variation 23697 23697 . . . alleles " C A"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL193730.1 samtools variation 24017 24017 . . . alleles " C A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193730.1 samtools variation 24871 24871 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL193730.1 samtools variation 24874 24874 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL193730.1 samtools variation 25045 25045 . . . alleles " G T"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL193730.1 samtools variation 77572 77572 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193730.1 samtools variation 77637 77637 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193730.1 samtools variation 78179 78179 . . . alleles " T G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193730.1 samtools variation 78272 78272 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL193730.1 samtools variation 78628 78628 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193730.1 samtools variation 79322 79322 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193730.1 samtools variation 79399 79399 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193730.1 samtools variation 79413 79413 . . . alleles " G T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193730.1 samtools variation 82858 82858 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193730.1 samtools variation 84747 84747 . . . alleles " G A"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; unknown ; N/A GL193730.1 samtools variation 85635 85635 . . . alleles " A C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL193730.1 samtools variation 86433 86433 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193730.1 samtools variation 94407 94407 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193730.1 samtools variation 101237 101237 . . . alleles " G A"; frequencies " 0.722033898305085 0.277966101694915"; depth 295 ; unknown ; N/A GL193730.1 samtools variation 104085 104085 . . . alleles " C T"; frequencies " 0.739413680781759 0.260586319218241"; depth 307 ; unknown ; N/A GL193730.1 samtools variation 107050 107050 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193730.1 samtools variation 110289 110289 . . . alleles " G A"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; N/A GL193730.1 samtools variation 110892 110892 . . . alleles " A C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193731.1 samtools variation 31015 31015 . . . alleles " T C"; frequencies " 0.690789473684211 0.309210526315789"; depth 304 ; unknown ; synonymous GL193731.1 samtools variation 105890 105890 . . . alleles " A G"; frequencies " 0.784615384615385 0.215384615384615"; depth 65 ; unknown ; synonymous GL193731.1 samtools variation 109406 109406 . . . alleles " T C"; frequencies " 0.31055900621118 0.68944099378882"; depth 161 ; known ; synonymous GL193731.1 samtools variation 109898 109898 . . . alleles " A G"; frequencies " 0.785234899328859 0.214765100671141"; depth 149 ; unknown ; synonymous GL193731.1 samtools variation 118157 118157 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193731.1 samtools variation 119781 119781 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193731.1 samtools variation 120534 120534 . . . alleles " T C"; frequencies " 0.354700854700855 0.645299145299145"; depth 234 ; known ; synonymous GL193731.1 samtools variation 122316 122316 . . . alleles " T C"; frequencies " 0.782991202346041 0.217008797653959"; depth 341 ; unknown ; N/A GL193731.1 samtools variation 123147 123147 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193731.1 samtools variation 123207 123207 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 69 ; known ; synonymous GL193731.1 samtools variation 128679 128679 . . . alleles " G T"; frequencies " 0.25 0.75"; depth 72 ; known ; N/A GL193731.1 samtools variation 129034 129034 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; known ; N/A GL193731.1 samtools variation 215066 215066 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193731.1 samtools variation 228895 228895 . . . alleles " G A"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; non-synonymous GL193731.1 samtools variation 240354 240354 . . . alleles " A G"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL193731.1 samtools variation 240397 240397 . . . alleles " C G"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; N/A GL193731.1 samtools variation 241351 241351 . . . alleles " C T"; frequencies " 0.414285714285714 0.585714285714286"; depth 210 ; unknown ; non-synonymous GL193731.1 samtools variation 241937 241937 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193731.1 samtools variation 262867 262867 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; non-synonymous GL193731.1 samtools variation 279686 279686 . . . alleles " T C"; frequencies " 0.79375 0.20625"; depth 160 ; unknown ; synonymous GL193731.1 samtools variation 279695 279695 . . . alleles " T C"; frequencies " 0.412121212121212 0.587878787878788"; depth 165 ; unknown ; synonymous GL193731.1 samtools variation 293051 293051 . . . alleles " G A"; frequencies " 0.705202312138728 0.294797687861272"; depth 173 ; unknown ; synonymous GL193731.1 samtools variation 294590 294590 . . . alleles " T C"; frequencies " 0.564356435643564 0.435643564356436"; depth 202 ; unknown ; non-synonymous GL193731.1 samtools variation 294609 294609 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 230 ; unknown ; synonymous GL193731.1 samtools variation 300947 300947 . . . alleles " C T"; frequencies " 0.383333333333333 0.616666666666667"; depth 120 ; unknown ; synonymous GL193731.1 samtools variation 312701 312701 . . . alleles " T C"; frequencies " 0.660130718954248 0.339869281045752"; depth 153 ; unknown ; non-synonymous GL193731.1 samtools variation 370689 370689 . . . alleles " A C"; frequencies " 0.375 0.625"; depth 64 ; unknown ; synonymous GL193731.1 samtools variation 424411 424411 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; N/A GL193733.1 samtools variation 35271 35271 . . . alleles " C A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193733.1 samtools variation 82205 82205 . . . alleles " T C"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; synonymous GL193733.1 samtools variation 83219 83219 . . . alleles " T A"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; N/A GL193733.1 samtools variation 83235 83235 . . . alleles " G T"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; unknown ; N/A GL193733.1 samtools variation 83312 83312 . . . alleles " C T"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL193733.1 samtools variation 85415 85415 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 84 ; unknown ; N/A GL193733.1 samtools variation 85735 85735 . . . alleles " A C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193733.1 samtools variation 86181 86181 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 35 ; unknown ; N/A GL193733.1 samtools variation 86373 86373 . . . alleles " T C"; frequencies " 0.58695652173913 0.41304347826087"; depth 46 ; unknown ; N/A GL193733.1 samtools variation 98777 98777 . . . alleles " C T"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL193733.1 samtools variation 105329 105329 . . . alleles " C G"; frequencies " 0.334152334152334 0.665847665847666"; depth 407 ; unknown ; synonymous GL193733.1 samtools variation 107340 107340 . . . alleles " C G"; frequencies " 0.537735849056604 0.462264150943396"; depth 318 ; known ; N/A GL193733.1 samtools variation 113602 113602 . . . alleles " C T"; frequencies " 0.768079800498753 0.231920199501247"; depth 401 ; unknown ; N/A GL193733.1 samtools variation 114124 114124 . . . alleles " G T"; frequencies " 0.707692307692308 0.292307692307692"; depth 65 ; unknown ; N/A GL193733.1 samtools variation 120648 120648 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193733.1 samtools variation 124292 124292 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 28 ; known ; N/A GL193733.1 samtools variation 125039 125039 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193733.1 samtools variation 133628 133628 . . . alleles " G A"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL193733.1 samtools variation 139966 139966 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193733.1 samtools variation 141372 141372 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL193733.1 samtools variation 154024 154024 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193733.1 samtools variation 305852 305852 . . . alleles " G A"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL193736.1 samtools variation 1571 1571 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193736.1 samtools variation 2197 2197 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193736.1 samtools variation 2479 2479 . . . alleles " T C"; frequencies " 0.28125 0.71875"; depth 32 ; known ; N/A GL193736.1 samtools variation 300396 300396 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193736.1 samtools variation 314579 314579 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193742.1 samtools variation 405596 405596 . . . alleles " C A"; frequencies " 0.32 0.68"; depth 25 ; known ; N/A GL193742.1 samtools variation 407567 407567 . . . alleles " G C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193746.1 samtools variation 226660 226660 . . . alleles " T C"; frequencies " 0.253968253968254 0.746031746031746"; depth 63 ; known ; N/A GL193746.1 samtools variation 246476 246476 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 130 ; unknown ; synonymous GL193746.1 samtools variation 295787 295787 . . . alleles " C G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193746.1 samtools variation 297296 297296 . . . alleles " A G"; frequencies " 0.448051948051948 0.551948051948052"; depth 154 ; unknown ; N/A GL193746.1 samtools variation 318453 318453 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; unknown ; N/A GL193746.1 samtools variation 342969 342969 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 68 ; unknown ; N/A GL193748.1 samtools variation 10469 10469 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193748.1 samtools variation 99525 99525 . . . alleles " G A"; frequencies " 0.795180722891566 0.204819277108434"; depth 83 ; unknown ; non-synonymous GL193748.1 samtools variation 110608 110608 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; synonymous GL193748.1 samtools variation 157268 157268 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL193748.1 samtools variation 157789 157789 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193748.1 samtools variation 157951 157951 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193748.1 samtools variation 157971 157971 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193748.1 samtools variation 159648 159648 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193748.1 samtools variation 159723 159723 . . . alleles " A T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL193748.1 samtools variation 160240 160240 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL193748.1 samtools variation 161948 161948 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193748.1 samtools variation 162110 162110 . . . alleles " C T"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL193748.1 samtools variation 162310 162310 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 20 ; known ; N/A GL193748.1 samtools variation 172301 172301 . . . alleles " G T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193748.1 samtools variation 175555 175555 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193748.1 samtools variation 175613 175613 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193748.1 samtools variation 190951 190951 . . . alleles " C T"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; known ; non-synonymous GL193755.1 samtools variation 181158 181158 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; non-synonymous GL193755.1 samtools variation 416911 416911 . . . alleles " C G"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL193758.1 samtools variation 124811 124811 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL193758.1 samtools variation 131092 131092 . . . alleles " G A"; frequencies " 0.693877551020408 0.306122448979592"; depth 49 ; unknown ; N/A GL193758.1 samtools variation 158656 158656 . . . alleles " C T"; frequencies " 0.763636363636364 0.236363636363636"; depth 495 ; unknown ; synonymous GL193758.1 samtools variation 159266 159266 . . . alleles " C A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193758.1 samtools variation 165854 165854 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193758.1 samtools variation 167391 167391 . . . alleles " C T"; frequencies " 0.626865671641791 0.373134328358209"; depth 67 ; unknown ; N/A GL193758.1 samtools variation 167448 167448 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 66 ; unknown ; N/A GL193758.1 samtools variation 168574 168574 . . . alleles " C T"; frequencies " 0.618469015795869 0.381530984204131"; depth 823 ; unknown ; synonymous GL193758.1 samtools variation 168610 168610 . . . alleles " G A"; frequencies " 0.778584392014519 0.219600725952813"; depth 551 ; unknown ; N/A GL193758.1 samtools variation 170039 170039 . . . alleles " A G"; frequencies " 0.23688155922039 0.76311844077961"; depth 667 ; known ; N/A GL193758.1 samtools variation 170094 170094 . . . alleles " T C"; frequencies " 0.20360824742268 0.79639175257732"; depth 388 ; known ; N/A GL193758.1 samtools variation 172607 172607 . . . alleles " G A"; frequencies " 0.36441893830703 0.63558106169297"; depth 697 ; unknown ; N/A GL193758.1 samtools variation 172979 172979 . . . alleles " T C"; frequencies " 0.512738853503185 0.487261146496815"; depth 628 ; known ; N/A GL193759.1 samtools variation 65106 65106 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193759.1 samtools variation 68370 68370 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193759.1 samtools variation 68378 68378 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193759.1 samtools variation 140353 140353 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193759.1 samtools variation 140366 140366 . . . alleles " T C"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL193759.1 samtools variation 142114 142114 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL193759.1 samtools variation 184792 184792 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193759.1 samtools variation 186596 186596 . . . alleles " G C"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL193759.1 samtools variation 186718 186718 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 36 ; known ; N/A GL193759.1 samtools variation 198635 198635 . . . alleles " G T"; frequencies " 0.612612612612613 0.385135135135135"; depth 444 ; unknown ; N/A GL193759.1 samtools variation 200893 200893 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193759.1 samtools variation 205118 205118 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193759.1 samtools variation 207307 207307 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193759.1 samtools variation 209007 209007 . . . alleles " G A"; frequencies " 0.690909090909091 0.309090909090909"; depth 55 ; unknown ; N/A GL193759.1 samtools variation 209468 209468 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL193759.1 samtools variation 211947 211947 . . . alleles " T A"; frequencies " 0.634615384615385 0.365384615384615"; depth 52 ; known ; N/A GL193759.1 samtools variation 212258 212258 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 32 ; known ; N/A GL193759.1 samtools variation 213216 213216 . . . alleles " T C"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; known ; N/A GL193759.1 samtools variation 214104 214104 . . . alleles " A G"; frequencies " 0.58695652173913 0.41304347826087"; depth 92 ; known ; N/A GL193759.1 samtools variation 214393 214393 . . . alleles " A G"; frequencies " 0.236111111111111 0.763888888888889"; depth 72 ; known ; N/A GL193759.1 samtools variation 214531 214531 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; known ; N/A GL193759.1 samtools variation 214544 214544 . . . alleles " G A"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; known ; N/A GL193759.1 samtools variation 214820 214820 . . . alleles " T C"; frequencies " 0.202702702702703 0.797297297297297"; depth 74 ; known ; N/A GL193759.1 samtools variation 215250 215250 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; known ; N/A GL193759.1 samtools variation 215359 215359 . . . alleles " T C"; frequencies " 0.33 0.67"; depth 100 ; unknown ; N/A GL193759.1 samtools variation 215741 215741 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL193759.1 samtools variation 215983 215983 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL193759.1 samtools variation 216086 216086 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL193759.1 samtools variation 216144 216144 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193759.1 samtools variation 216417 216417 . . . alleles " T A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193759.1 samtools variation 217258 217258 . . . alleles " C G"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; known ; N/A GL193759.1 samtools variation 217288 217288 . . . alleles " C T"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; known ; N/A GL193759.1 samtools variation 217419 217419 . . . alleles " G A"; frequencies " 0.537313432835821 0.462686567164179"; depth 67 ; known ; N/A GL193759.1 samtools variation 218233 218233 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193759.1 samtools variation 218240 218240 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193759.1 samtools variation 219455 219455 . . . alleles " G A"; frequencies " 0.640625 0.359375"; depth 64 ; known ; N/A GL193759.1 samtools variation 220790 220790 . . . alleles " A G"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL193759.1 samtools variation 221009 221009 . . . alleles " T C"; frequencies " 0.288888888888889 0.711111111111111"; depth 45 ; known ; N/A GL193759.1 samtools variation 221136 221136 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; known ; N/A GL193759.1 samtools variation 222167 222167 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193759.1 samtools variation 222179 222179 . . . alleles " G C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL193759.1 samtools variation 222741 222741 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; N/A GL193759.1 samtools variation 222802 222802 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; N/A GL193759.1 samtools variation 222987 222987 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 48 ; known ; N/A GL193759.1 samtools variation 223570 223570 . . . alleles " A G"; frequencies " 0.78494623655914 0.21505376344086"; depth 93 ; known ; N/A GL193759.1 samtools variation 224825 224825 . . . alleles " T C"; frequencies " 0.68 0.32"; depth 50 ; unknown ; N/A GL193759.1 samtools variation 227953 227953 . . . alleles " A G"; frequencies " 0.755238095238095 0.244761904761905"; depth 1050 ; known ; N/A GL193759.1 samtools variation 227963 227963 . . . alleles " G A"; frequencies " 0.766283524904215 0.233716475095785"; depth 1044 ; known ; N/A GL193759.1 samtools variation 228115 228115 . . . alleles " C T"; frequencies " 0.791791791791792 0.208208208208208"; depth 999 ; unknown ; N/A GL193759.1 samtools variation 228687 228687 . . . alleles " C A"; frequencies " 0.606473594548552 0.393526405451448"; depth 587 ; unknown ; N/A GL193759.1 samtools variation 229082 229082 . . . alleles " T C"; frequencies " 0.422222222222222 0.577777777777778"; depth 45 ; known ; N/A GL193759.1 samtools variation 230951 230951 . . . alleles " A G"; frequencies " 0.777943368107303 0.222056631892697"; depth 671 ; known ; N/A GL193759.1 samtools variation 231065 231065 . . . alleles " A G"; frequencies " 0.251005631536605 0.748994368463395"; depth 1243 ; known ; N/A GL193759.1 samtools variation 237659 237659 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193759.1 samtools variation 242835 242835 . . . alleles " G A"; frequencies " 0.611570247933884 0.388429752066116"; depth 242 ; unknown ; non-synonymous GL193759.1 samtools variation 243652 243652 . . . alleles " C T"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; known ; N/A GL193759.1 samtools variation 253249 253249 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 110 ; known ; synonymous GL193759.1 samtools variation 259492 259492 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193759.1 samtools variation 263038 263038 . . . alleles " A G"; frequencies " 0.74468085106383 0.25531914893617"; depth 47 ; known ; N/A GL193759.1 samtools variation 263092 263092 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 36 ; known ; N/A GL193759.1 samtools variation 265760 265760 . . . alleles " C A"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; known ; N/A GL193759.1 samtools variation 265804 265804 . . . alleles " T G"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; known ; N/A GL193759.1 samtools variation 279209 279209 . . . alleles " A G"; frequencies " 0.76056338028169 0.23943661971831"; depth 71 ; unknown ; N/A GL193759.1 samtools variation 376892 376892 . . . alleles " C G"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL193759.1 samtools variation 376965 376965 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193759.1 samtools variation 377280 377280 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193759.1 samtools variation 377287 377287 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193759.1 samtools variation 379576 379576 . . . alleles " T C"; frequencies " 0.664705882352941 0.335294117647059"; depth 170 ; known ; N/A GL193759.1 samtools variation 379951 379951 . . . alleles " G T"; frequencies " 0.774058577405858 0.221757322175732"; depth 239 ; unknown ; N/A GL193759.1 samtools variation 380984 380984 . . . alleles " C A"; frequencies " 0.642335766423358 0.357664233576642"; depth 137 ; known ; N/A GL193759.1 samtools variation 381355 381355 . . . alleles " C T"; frequencies " 0.405063291139241 0.594936708860759"; depth 79 ; known ; N/A GL193759.1 samtools variation 382382 382382 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 80 ; known ; N/A GL193759.1 samtools variation 382397 382397 . . . alleles " C T"; frequencies " 0.753086419753086 0.246913580246914"; depth 81 ; unknown ; N/A GL193759.1 samtools variation 382445 382445 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 153 ; known ; N/A GL193759.1 samtools variation 382725 382725 . . . alleles " A G"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; known ; N/A GL193759.1 samtools variation 395165 395165 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193759.1 samtools variation 409260 409260 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193760.1 samtools variation 124264 124264 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193760.1 samtools variation 124619 124619 . . . alleles " A G"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; known ; N/A GL193760.1 samtools variation 148348 148348 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193760.1 samtools variation 149055 149055 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 22 ; known ; synonymous GL193760.1 samtools variation 149360 149360 . . . alleles " C A"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; known ; non-synonymous GL193760.1 samtools variation 174145 174145 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; known ; N/A GL193760.1 samtools variation 174537 174537 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; synonymous GL193760.1 samtools variation 175588 175588 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193760.1 samtools variation 189377 189377 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; synonymous GL193760.1 samtools variation 209898 209898 . . . alleles " T G"; frequencies " 0.774566473988439 0.225433526011561"; depth 173 ; unknown ; N/A GL193760.1 samtools variation 211853 211853 . . . alleles " T G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193760.1 samtools variation 222118 222118 . . . alleles " A G"; frequencies " 0.776119402985075 0.223880597014925"; depth 67 ; unknown ; N/A GL193760.1 samtools variation 226119 226119 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 50 ; unknown ; synonymous GL193760.1 samtools variation 230944 230944 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 51 ; known ; synonymous GL193761.1 samtools variation 61445 61445 . . . alleles " G A"; frequencies " 0.797619047619048 0.202380952380952"; depth 84 ; unknown ; N/A GL193761.1 samtools variation 62012 62012 . . . alleles " T G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL193761.1 samtools variation 62323 62323 . . . alleles " A G"; frequencies " 0.611764705882353 0.388235294117647"; depth 85 ; unknown ; N/A GL193761.1 samtools variation 62485 62485 . . . alleles " G A"; frequencies " 0.603305785123967 0.396694214876033"; depth 121 ; unknown ; N/A GL193761.1 samtools variation 62614 62614 . . . alleles " C A"; frequencies " 0.58 0.42"; depth 50 ; unknown ; N/A GL193761.1 samtools variation 62989 62989 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL193761.1 samtools variation 63270 63270 . . . alleles " T G"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL193761.1 samtools variation 63278 63278 . . . alleles " G A"; frequencies " 0.622641509433962 0.377358490566038"; depth 53 ; unknown ; N/A GL193761.1 samtools variation 63427 63427 . . . alleles " C A"; frequencies " 0.614285714285714 0.385714285714286"; depth 70 ; unknown ; N/A GL193761.1 samtools variation 63614 63614 . . . alleles " G C"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL193761.1 samtools variation 63867 63867 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193761.1 samtools variation 64184 64184 . . . alleles " C T"; frequencies " 0.432432432432432 0.567567567567568"; depth 37 ; known ; N/A GL193761.1 samtools variation 64520 64520 . . . alleles " A G"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL193761.1 samtools variation 64972 64972 . . . alleles " A G"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; unknown ; N/A GL193761.1 samtools variation 65110 65110 . . . alleles " A T"; frequencies " 0.573529411764706 0.426470588235294"; depth 68 ; unknown ; N/A GL193761.1 samtools variation 65181 65181 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 60 ; unknown ; N/A GL193761.1 samtools variation 65522 65522 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 68 ; unknown ; N/A GL193761.1 samtools variation 65569 65569 . . . alleles " G A"; frequencies " 0.507462686567164 0.492537313432836"; depth 67 ; unknown ; N/A GL193761.1 samtools variation 66678 66678 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193761.1 samtools variation 68432 68432 . . . alleles " A G"; frequencies " 0.490566037735849 0.509433962264151"; depth 53 ; unknown ; synonymous GL193761.1 samtools variation 84530 84530 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193761.1 samtools variation 170777 170777 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193761.1 samtools variation 170783 170783 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193761.1 samtools variation 174612 174612 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193761.1 samtools variation 175346 175346 . . . alleles " A G"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; N/A GL193761.1 samtools variation 175734 175734 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193761.1 samtools variation 177184 177184 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193761.1 samtools variation 178462 178462 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193761.1 samtools variation 178923 178923 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL193761.1 samtools variation 417693 417693 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 30 ; known ; N/A GL193761.1 samtools variation 420177 420177 . . . alleles " G A"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL193762.1 samtools variation 367740 367740 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; known ; synonymous GL193763.1 samtools variation 487 487 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193764.1 samtools variation 201017 201017 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 85 ; unknown ; synonymous GL193764.1 samtools variation 205662 205662 . . . alleles " A G"; frequencies " 0.745762711864407 0.254237288135593"; depth 59 ; unknown ; non-synonymous GL193764.1 samtools variation 245389 245389 . . . alleles " T G"; frequencies " 0.542857142857143 0.457142857142857"; depth 70 ; unknown ; non-synonymous GL193764.1 samtools variation 252773 252773 . . . alleles " A G"; frequencies " 0.528925619834711 0.471074380165289"; depth 121 ; known ; synonymous GL193764.1 samtools variation 271836 271836 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193764.1 samtools variation 274847 274847 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193764.1 samtools variation 275166 275166 . . . alleles " G A"; frequencies " 0.441176470588235 0.558823529411765"; depth 68 ; known ; N/A GL193764.1 samtools variation 275528 275528 . . . alleles " C T"; frequencies " 0.714859437751004 0.285140562248996"; depth 249 ; known ; N/A GL193764.1 samtools variation 275625 275625 . . . alleles " A G"; frequencies " 0.328205128205128 0.671794871794872"; depth 195 ; known ; N/A GL193764.1 samtools variation 276030 276030 . . . alleles " A T"; frequencies " 0.743961352657005 0.256038647342995"; depth 207 ; known ; N/A GL193764.1 samtools variation 276068 276068 . . . alleles " A G"; frequencies " 0.727891156462585 0.272108843537415"; depth 294 ; known ; N/A GL193765.1 samtools variation 258 258 . . . alleles " G A"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL193765.1 samtools variation 676 676 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193765.1 samtools variation 1134 1134 . . . alleles " T C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL193765.1 samtools variation 147765 147765 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193767.1 samtools variation 13671 13671 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193767.1 samtools variation 19445 19445 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193767.1 samtools variation 35442 35442 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193769.1 samtools variation 111854 111854 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL193769.1 samtools variation 123513 123513 . . . alleles " T A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193769.1 samtools variation 132837 132837 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193769.1 samtools variation 194026 194026 . . . alleles " A C"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL193769.1 samtools variation 197745 197745 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193769.1 samtools variation 201074 201074 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL193769.1 samtools variation 201189 201189 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193769.1 samtools variation 201198 201198 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193769.1 samtools variation 202449 202449 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL193769.1 samtools variation 202461 202461 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL193769.1 samtools variation 204196 204196 . . . alleles " G A"; frequencies " 0.660714285714286 0.339285714285714"; depth 56 ; unknown ; N/A GL193769.1 samtools variation 211163 211163 . . . alleles " G T"; frequencies " 0.209677419354839 0.790322580645161"; depth 62 ; known ; N/A GL193769.1 samtools variation 301816 301816 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 34 ; unknown ; N/A GL193769.1 samtools variation 302170 302170 . . . alleles " A G"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL193769.1 samtools variation 304682 304682 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193770.1 samtools variation 223043 223043 . . . alleles " A T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL193770.1 samtools variation 223141 223141 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL193770.1 samtools variation 223434 223434 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL193770.1 samtools variation 224645 224645 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193770.1 samtools variation 250420 250420 . . . alleles " A T"; frequencies " 0.453125 0.53125"; depth 64 ; known ; N/A GL193770.1 samtools variation 250516 250516 . . . alleles " T G"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; known ; N/A GL193770.1 samtools variation 250603 250603 . . . alleles " C T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; N/A GL193770.1 samtools variation 250983 250983 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL193770.1 samtools variation 251595 251595 . . . alleles " C T"; frequencies " 0.413793103448276 0.586206896551724"; depth 58 ; known ; N/A GL193770.1 samtools variation 251715 251715 . . . alleles " A G"; frequencies " 0.336538461538462 0.663461538461538"; depth 104 ; known ; N/A GL193770.1 samtools variation 251749 251749 . . . alleles " A G"; frequencies " 0.379310344827586 0.620689655172414"; depth 87 ; known ; N/A GL193770.1 samtools variation 253159 253159 . . . alleles " C T"; frequencies " 0.342857142857143 0.657142857142857"; depth 175 ; known ; N/A GL193770.1 samtools variation 253962 253962 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 1020 ; known ; N/A GL193770.1 samtools variation 255112 255112 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL193770.1 samtools variation 256909 256909 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL193770.1 samtools variation 257073 257073 . . . alleles " T G"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; known ; N/A GL193770.1 samtools variation 267294 267294 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 32 ; known ; N/A GL193770.1 samtools variation 269926 269926 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL193771.1 samtools variation 477318 477318 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 20 ; known ; non-synonymous GL193771.1 samtools variation 477962 477962 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; synonymous GL193772.1 samtools variation 29757 29757 . . . alleles " G T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193772.1 samtools variation 94538 94538 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193772.1 samtools variation 132551 132551 . . . alleles " T A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193772.1 samtools variation 243988 243988 . . . alleles " A T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193772.1 samtools variation 267071 267071 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193772.1 samtools variation 270966 270966 . . . alleles " G T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193772.1 samtools variation 276380 276380 . . . alleles " T A"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL193772.1 samtools variation 276521 276521 . . . alleles " T C"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; known ; N/A GL193772.1 samtools variation 290147 290147 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL193772.1 samtools variation 299471 299471 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 33 ; known ; N/A GL193772.1 samtools variation 300267 300267 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL193772.1 samtools variation 302146 302146 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193772.1 samtools variation 319512 319512 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193772.1 samtools variation 335223 335223 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193772.1 samtools variation 367338 367338 . . . alleles " A C"; frequencies " 0.673267326732673 0.316831683168317"; depth 101 ; unknown ; N/A GL193772.1 samtools variation 370319 370319 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193772.1 samtools variation 370587 370587 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 44 ; unknown ; N/A GL193772.1 samtools variation 371856 371856 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL193772.1 samtools variation 440186 440186 . . . alleles " T C"; frequencies " 0.674496644295302 0.325503355704698"; depth 596 ; unknown ; synonymous GL193772.1 samtools variation 449311 449311 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193772.1 samtools variation 453123 453123 . . . alleles " C G"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; non-synonymous GL193775.1 samtools variation 25982 25982 . . . alleles " C G"; frequencies " 0.608391608391608 0.391608391608392"; depth 143 ; unknown ; N/A GL193775.1 samtools variation 27268 27268 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193775.1 samtools variation 30260 30260 . . . alleles " A G"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL193775.1 samtools variation 40188 40188 . . . alleles " A G"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL193775.1 samtools variation 40242 40242 . . . alleles " G C"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL193775.1 samtools variation 40920 40920 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193775.1 samtools variation 63205 63205 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL193775.1 samtools variation 69188 69188 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193775.1 samtools variation 77377 77377 . . . alleles " T C"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; known ; N/A GL193775.1 samtools variation 77456 77456 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; known ; N/A GL193775.1 samtools variation 77548 77548 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193775.1 samtools variation 80350 80350 . . . alleles " A G"; frequencies " 0.355555555555556 0.644444444444444"; depth 45 ; known ; N/A GL193775.1 samtools variation 83835 83835 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193775.1 samtools variation 83871 83871 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193775.1 samtools variation 84378 84378 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193775.1 samtools variation 84426 84426 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193775.1 samtools variation 84685 84685 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193775.1 samtools variation 84947 84947 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193775.1 samtools variation 85349 85349 . . . alleles " G A"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL193775.1 samtools variation 86244 86244 . . . alleles " G C"; frequencies " 0.363057324840764 0.636942675159236"; depth 157 ; known ; synonymous GL193775.1 samtools variation 86262 86262 . . . alleles " C T"; frequencies " 0.56701030927835 0.43298969072165"; depth 194 ; unknown ; synonymous GL193775.1 samtools variation 86522 86522 . . . alleles " C T"; frequencies " 0.789783889980354 0.210216110019646"; depth 509 ; known ; non-synonymous GL193775.1 samtools variation 87048 87048 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193775.1 samtools variation 87179 87179 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193775.1 samtools variation 87220 87220 . . . alleles " T G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193775.1 samtools variation 89832 89832 . . . alleles " G T"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; unknown ; N/A GL193775.1 samtools variation 89972 89972 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 44 ; known ; N/A GL193775.1 samtools variation 90028 90028 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193775.1 samtools variation 90248 90248 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193775.1 samtools variation 90573 90573 . . . alleles " G T"; frequencies " 0.761194029850746 0.238805970149254"; depth 67 ; unknown ; N/A GL193775.1 samtools variation 91116 91116 . . . alleles " T G"; frequencies " 0.554054054054054 0.445945945945946"; depth 74 ; unknown ; N/A GL193775.1 samtools variation 91219 91219 . . . alleles " G C"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL193775.1 samtools variation 91230 91230 . . . alleles " G T"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL193775.1 samtools variation 91410 91410 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193775.1 samtools variation 91514 91514 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193775.1 samtools variation 91870 91870 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL193775.1 samtools variation 91877 91877 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL193775.1 samtools variation 91992 91992 . . . alleles " G A"; frequencies " 0.511919698870765 0.488080301129235"; depth 797 ; unknown ; N/A GL193775.1 samtools variation 92077 92077 . . . alleles " G A"; frequencies " 0.639583333333333 0.360416666666667"; depth 480 ; unknown ; N/A GL193775.1 samtools variation 92083 92083 . . . alleles " G A"; frequencies " 0.659047619047619 0.340952380952381"; depth 525 ; unknown ; N/A GL193775.1 samtools variation 92651 92651 . . . alleles " A C"; frequencies " 0.47112462006079 0.52887537993921"; depth 658 ; unknown ; N/A GL193775.1 samtools variation 92993 92993 . . . alleles " G A"; frequencies " 0.699421965317919 0.300578034682081"; depth 346 ; unknown ; N/A GL193775.1 samtools variation 93015 93015 . . . alleles " C T"; frequencies " 0.763157894736842 0.236842105263158"; depth 494 ; unknown ; N/A GL193775.1 samtools variation 93738 93738 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; unknown ; N/A GL193775.1 samtools variation 95077 95077 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193775.1 samtools variation 150765 150765 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 30 ; unknown ; synonymous GL193775.1 samtools variation 163201 163201 . . . alleles " T C"; frequencies " 0.257142857142857 0.742857142857143"; depth 35 ; known ; N/A GL193775.1 samtools variation 335963 335963 . . . alleles " C A"; frequencies " 0.706896551724138 0.293103448275862"; depth 58 ; known ; synonymous GL193775.1 samtools variation 336023 336023 . . . alleles " C T"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; synonymous GL193775.1 samtools variation 341910 341910 . . . alleles " T A"; frequencies " 0.45 0.55"; depth 20 ; known ; synonymous GL193775.1 samtools variation 345093 345093 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; non-synonymous GL193775.1 samtools variation 371363 371363 . . . alleles " C T"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL193775.1 samtools variation 413098 413098 . . . alleles " A C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193775.1 samtools variation 414261 414261 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193775.1 samtools variation 422296 422296 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193775.1 samtools variation 465606 465606 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193777.1 samtools variation 18553 18553 . . . alleles " C T"; frequencies " 0.749262536873156 0.250737463126844"; depth 339 ; unknown ; non-synonymous GL193777.1 samtools variation 21734 21734 . . . alleles " A G"; frequencies " 0.702564102564103 0.297435897435897"; depth 195 ; unknown ; synonymous GL193777.1 samtools variation 22639 22639 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193777.1 samtools variation 22983 22983 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193777.1 samtools variation 23099 23099 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL193777.1 samtools variation 55845 55845 . . . alleles " T C"; frequencies " 0.783132530120482 0.216867469879518"; depth 249 ; unknown ; non-synonymous GL193777.1 samtools variation 106062 106062 . . . alleles " C A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193777.1 samtools variation 200171 200171 . . . alleles " G C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193777.1 samtools variation 262160 262160 . . . alleles " T C"; frequencies " 0.487179487179487 0.512820512820513"; depth 39 ; unknown ; N/A GL193777.1 samtools variation 262755 262755 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193777.1 samtools variation 263503 263503 . . . alleles " C T"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL193778.1 samtools variation 137254 137254 . . . alleles " C T"; frequencies " 0.64957264957265 0.35042735042735"; depth 117 ; unknown ; N/A GL193778.1 samtools variation 137313 137313 . . . alleles " C A"; frequencies " 0.721854304635762 0.278145695364238"; depth 151 ; known ; N/A GL193778.1 samtools variation 137607 137607 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 220 ; known ; N/A GL193778.1 samtools variation 137847 137847 . . . alleles " T C"; frequencies " 0.733009708737864 0.266990291262136"; depth 206 ; known ; N/A GL193778.1 samtools variation 137971 137971 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; non-synonymous GL193778.1 samtools variation 138542 138542 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193778.1 samtools variation 138712 138712 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193778.1 samtools variation 138721 138721 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL193778.1 samtools variation 139900 139900 . . . alleles " A T"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL193778.1 samtools variation 141303 141303 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL193778.1 samtools variation 141314 141314 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL193778.1 samtools variation 142351 142351 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193778.1 samtools variation 142695 142695 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193778.1 samtools variation 143787 143787 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL193778.1 samtools variation 143853 143853 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL193778.1 samtools variation 144390 144390 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193778.1 samtools variation 145252 145252 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193778.1 samtools variation 145261 145261 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193778.1 samtools variation 146353 146353 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL193778.1 samtools variation 146727 146727 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193778.1 samtools variation 149357 149357 . . . alleles " A T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193778.1 samtools variation 151544 151544 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL193778.1 samtools variation 153505 153505 . . . alleles " G A"; frequencies " 0.784615384615385 0.215384615384615"; depth 65 ; unknown ; N/A GL193778.1 samtools variation 154941 154941 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193778.1 samtools variation 156062 156062 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL193778.1 samtools variation 156582 156582 . . . alleles " C A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL193778.1 samtools variation 156745 156745 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193778.1 samtools variation 157621 157621 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL193778.1 samtools variation 157713 157713 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193778.1 samtools variation 165363 165363 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193778.1 samtools variation 165388 165388 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193778.1 samtools variation 169357 169357 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193778.1 samtools variation 237813 237813 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; synonymous GL193778.1 samtools variation 239506 239506 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193778.1 samtools variation 255085 255085 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; known ; synonymous GL193778.1 samtools variation 255297 255297 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL193778.1 samtools variation 255455 255455 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193778.1 samtools variation 255587 255587 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193779.1 samtools variation 11511 11511 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193779.1 samtools variation 11512 11512 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193779.1 samtools variation 18332 18332 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193779.1 samtools variation 27347 27347 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193779.1 samtools variation 28404 28404 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193779.1 samtools variation 30609 30609 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193779.1 samtools variation 30679 30679 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193779.1 samtools variation 30833 30833 . . . alleles " G T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL193779.1 samtools variation 31840 31840 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 35 ; known ; N/A GL193779.1 samtools variation 31860 31860 . . . alleles " T C"; frequencies " 0.446808510638298 0.553191489361702"; depth 47 ; known ; N/A GL193779.1 samtools variation 45624 45624 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL193779.1 samtools variation 45707 45707 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL193779.1 samtools variation 47169 47169 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; unknown ; N/A GL193779.1 samtools variation 47765 47765 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 63 ; known ; N/A GL193779.1 samtools variation 48528 48528 . . . alleles " T A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193779.1 samtools variation 49369 49369 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193779.1 samtools variation 50477 50477 . . . alleles " C T"; frequencies " 0.741379310344828 0.258620689655172"; depth 58 ; unknown ; N/A GL193779.1 samtools variation 50924 50924 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193779.1 samtools variation 60984 60984 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193779.1 samtools variation 80350 80350 . . . alleles " G A"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; synonymous GL193779.1 samtools variation 82173 82173 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL193779.1 samtools variation 105094 105094 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; non-synonymous GL193779.1 samtools variation 133484 133484 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL193779.1 samtools variation 135060 135060 . . . alleles " T C"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; N/A GL193779.1 samtools variation 135960 135960 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193779.1 samtools variation 142553 142553 . . . alleles " G A"; frequencies " 0.767676767676768 0.232323232323232"; depth 99 ; unknown ; non-synonymous GL193779.1 samtools variation 165389 165389 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 46 ; known ; non-synonymous GL193779.1 samtools variation 165518 165518 . . . alleles " G A"; frequencies " 0.711864406779661 0.288135593220339"; depth 59 ; unknown ; non-synonymous GL193779.1 samtools variation 167293 167293 . . . alleles " G T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL193779.1 samtools variation 168309 168309 . . . alleles " A G"; frequencies " 0.78 0.22"; depth 50 ; unknown ; N/A GL193779.1 samtools variation 168416 168416 . . . alleles " T A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193779.1 samtools variation 243675 243675 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL193779.1 samtools variation 243779 243779 . . . alleles " A G"; frequencies " 0.707317073170732 0.292682926829268"; depth 123 ; unknown ; N/A GL193779.1 samtools variation 243808 243808 . . . alleles " T G"; frequencies " 0.737430167597765 0.262569832402235"; depth 179 ; unknown ; N/A GL193779.1 samtools variation 244508 244508 . . . alleles " A G"; frequencies " 0.671140939597315 0.328859060402685"; depth 149 ; known ; N/A GL193779.1 samtools variation 244674 244674 . . . alleles " A T"; frequencies " 0.517482517482518 0.482517482517482"; depth 143 ; known ; N/A GL193779.1 samtools variation 244748 244748 . . . alleles " A G"; frequencies " 0.288888888888889 0.711111111111111"; depth 135 ; known ; N/A GL193779.1 samtools variation 244922 244922 . . . alleles " T C"; frequencies " 0.248407643312102 0.751592356687898"; depth 157 ; known ; N/A GL193779.1 samtools variation 244969 244969 . . . alleles " T A"; frequencies " 0.298850574712644 0.701149425287356"; depth 174 ; known ; N/A GL193779.1 samtools variation 246606 246606 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193779.1 samtools variation 247364 247364 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193779.1 samtools variation 250360 250360 . . . alleles " C T"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL193779.1 samtools variation 250958 250958 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193779.1 samtools variation 250977 250977 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; N/A GL193779.1 samtools variation 251806 251806 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193779.1 samtools variation 252274 252274 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193779.1 samtools variation 252517 252517 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193779.1 samtools variation 252937 252937 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193779.1 samtools variation 255057 255057 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL193779.1 samtools variation 255141 255141 . . . alleles " A T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193779.1 samtools variation 256256 256256 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 52 ; known ; N/A GL193779.1 samtools variation 258679 258679 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193779.1 samtools variation 259119 259119 . . . alleles " G T"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193779.1 samtools variation 260047 260047 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL193779.1 samtools variation 261029 261029 . . . alleles " A C"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; known ; N/A GL193780.1 samtools variation 65656 65656 . . . alleles " G A"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; known ; synonymous GL193780.1 samtools variation 90035 90035 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 96 ; known ; N/A GL193783.1 samtools variation 26953 26953 . . . alleles " C T"; frequencies " 0.783216783216783 0.216783216783217"; depth 143 ; known ; synonymous GL193783.1 samtools variation 27991 27991 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193783.1 samtools variation 28777 28777 . . . alleles " A G"; frequencies " 0.537931034482759 0.459770114942529"; depth 435 ; known ; N/A GL193783.1 samtools variation 47721 47721 . . . alleles " G A"; frequencies " 0.670886075949367 0.329113924050633"; depth 79 ; unknown ; N/A GL193783.1 samtools variation 81338 81338 . . . alleles " A C"; frequencies " 0.441860465116279 0.558139534883721"; depth 43 ; known ; non-synonymous GL193783.1 samtools variation 84811 84811 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193783.1 samtools variation 109268 109268 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 57 ; known ; N/A GL193783.1 samtools variation 120099 120099 . . . alleles " G A"; frequencies " 0.737704918032787 0.262295081967213"; depth 122 ; unknown ; synonymous GL193783.1 samtools variation 120102 120102 . . . alleles " C T"; frequencies " 0.752066115702479 0.247933884297521"; depth 121 ; unknown ; synonymous GL193783.1 samtools variation 148837 148837 . . . alleles " C A"; frequencies " 0.78589634664401 0.213254035683942"; depth 1177 ; unknown ; N/A GL193783.1 samtools variation 214927 214927 . . . alleles " C T"; frequencies " 0.486178861788618 0.513821138211382"; depth 615 ; known ; non-synonymous GL193783.1 samtools variation 216884 216884 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193784.1 samtools variation 336647 336647 . . . alleles " T G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193784.1 samtools variation 337819 337819 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL193785.1 samtools variation 304932 304932 . . . alleles " G T"; frequencies " 0.631578947368421 0.368421052631579"; depth 95 ; unknown ; N/A GL193785.1 samtools variation 382092 382092 . . . alleles " A G"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; known ; synonymous GL193785.1 samtools variation 382105 382105 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; non-synonymous GL193787.1 samtools variation 268368 268368 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193787.1 samtools variation 277735 277735 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL193787.1 samtools variation 279442 279442 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193787.1 samtools variation 304285 304285 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193787.1 samtools variation 337244 337244 . . . alleles " C A"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; unknown ; N/A GL193787.1 samtools variation 420305 420305 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193787.1 samtools variation 424397 424397 . . . alleles " A C"; frequencies " 0.666666666666667 0.266666666666667"; depth 15 ; unknown ; N/A GL193787.1 samtools variation 424986 424986 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193787.1 samtools variation 425402 425402 . . . alleles " G C"; frequencies " 0.737373737373737 0.262626262626263"; depth 99 ; unknown ; N/A GL193787.1 samtools variation 435455 435455 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193787.1 samtools variation 441316 441316 . . . alleles " A C"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL193787.1 samtools variation 441360 441360 . . . alleles " T G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL193787.1 samtools variation 442520 442520 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 36 ; known ; N/A GL193787.1 samtools variation 442603 442603 . . . alleles " G A"; frequencies " 0.258064516129032 0.741935483870968"; depth 62 ; known ; N/A GL193787.1 samtools variation 442661 442661 . . . alleles " T C"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; known ; N/A GL193787.1 samtools variation 443189 443189 . . . alleles " A G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL193787.1 samtools variation 447172 447172 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL193787.1 samtools variation 450334 450334 . . . alleles " C A"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL193787.1 samtools variation 450356 450356 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193787.1 samtools variation 458827 458827 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193787.1 samtools variation 459416 459416 . . . alleles " T G"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL193787.1 samtools variation 460275 460275 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193787.1 samtools variation 464756 464756 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 36 ; known ; N/A GL193787.1 samtools variation 469717 469717 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193787.1 samtools variation 474044 474044 . . . alleles " T G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL193787.1 samtools variation 476032 476032 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL193787.1 samtools variation 476068 476068 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193787.1 samtools variation 480414 480414 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; N/A GL193787.1 samtools variation 481516 481516 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193787.1 samtools variation 481988 481988 . . . alleles " G T"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; known ; N/A GL193787.1 samtools variation 482884 482884 . . . alleles " T C"; frequencies " 0.404761904761905 0.595238095238095"; depth 42 ; unknown ; N/A GL193787.1 samtools variation 482919 482919 . . . alleles " G A"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; unknown ; N/A GL193787.1 samtools variation 483334 483334 . . . alleles " T C"; frequencies " 0.796296296296296 0.203703703703704"; depth 108 ; unknown ; N/A GL193787.1 samtools variation 483335 483335 . . . alleles " G A"; frequencies " 0.794392523364486 0.205607476635514"; depth 107 ; unknown ; N/A GL193787.1 samtools variation 483547 483547 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193787.1 samtools variation 483847 483847 . . . alleles " G A"; frequencies " 0.604166666666667 0.395833333333333"; depth 96 ; unknown ; N/A GL193787.1 samtools variation 484804 484804 . . . alleles " T C"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; unknown ; N/A GL193787.1 samtools variation 485497 485497 . . . alleles " A G"; frequencies " 0.761467889908257 0.238532110091743"; depth 109 ; unknown ; N/A GL193787.1 samtools variation 485534 485534 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 108 ; unknown ; N/A GL193787.1 samtools variation 485644 485644 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 48 ; unknown ; N/A GL193790.1 samtools variation 19822 19822 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193791.1 samtools variation 7702 7702 . . . alleles " G C"; frequencies " 0.46031746031746 0.53968253968254"; depth 63 ; unknown ; N/A GL193791.1 samtools variation 7761 7761 . . . alleles " A G"; frequencies " 0.693877551020408 0.306122448979592"; depth 49 ; known ; N/A GL193791.1 samtools variation 7912 7912 . . . alleles " G A"; frequencies " 0.759259259259259 0.240740740740741"; depth 54 ; unknown ; N/A GL193791.1 samtools variation 8356 8356 . . . alleles " A G"; frequencies " 0.290909090909091 0.709090909090909"; depth 55 ; known ; N/A GL193791.1 samtools variation 8396 8396 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 51 ; unknown ; N/A GL193791.1 samtools variation 8719 8719 . . . alleles " C A"; frequencies " 0.716216216216216 0.283783783783784"; depth 74 ; known ; N/A GL193791.1 samtools variation 8946 8946 . . . alleles " G A"; frequencies " 0.657534246575342 0.342465753424658"; depth 73 ; known ; N/A GL193791.1 samtools variation 9132 9132 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 49 ; known ; N/A GL193791.1 samtools variation 13280 13280 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; synonymous GL193791.1 samtools variation 24749 24749 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193791.1 samtools variation 44895 44895 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 36 ; known ; N/A GL193791.1 samtools variation 45589 45589 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193791.1 samtools variation 48322 48322 . . . alleles " C G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL193791.1 samtools variation 52250 52250 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193791.1 samtools variation 56696 56696 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193791.1 samtools variation 60285 60285 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193791.1 samtools variation 69053 69053 . . . alleles " T C"; frequencies " 0.397435897435897 0.602564102564103"; depth 78 ; known ; non-synonymous GL193791.1 samtools variation 69384 69384 . . . alleles " G C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL193791.1 samtools variation 71472 71472 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193791.1 samtools variation 74195 74195 . . . alleles " G A"; frequencies " 0.430493273542601 0.569506726457399"; depth 223 ; known ; synonymous GL193791.1 samtools variation 74539 74539 . . . alleles " G T"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL193791.1 samtools variation 98375 98375 . . . alleles " G A"; frequencies " 0.527272727272727 0.472727272727273"; depth 55 ; known ; synonymous GL193791.1 samtools variation 115930 115930 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL193791.1 samtools variation 129290 129290 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 120 ; unknown ; N/A GL193791.1 samtools variation 138265 138265 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193791.1 samtools variation 140231 140231 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193791.1 samtools variation 148109 148109 . . . alleles " T G"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL193791.1 samtools variation 148642 148642 . . . alleles " G A"; frequencies " 0.427536231884058 0.572463768115942"; depth 138 ; known ; N/A GL193791.1 samtools variation 228751 228751 . . . alleles " C T"; frequencies " 0.435897435897436 0.564102564102564"; depth 78 ; known ; N/A GL193791.1 samtools variation 234083 234083 . . . alleles " C T"; frequencies " 0.591240875912409 0.408759124087591"; depth 411 ; known ; synonymous GL193791.1 samtools variation 242569 242569 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL193791.1 samtools variation 342378 342378 . . . alleles " T C"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL193791.1 samtools variation 349441 349441 . . . alleles " T G"; frequencies " 0.78839590443686 0.21160409556314"; depth 293 ; unknown ; N/A GL193791.1 samtools variation 350163 350163 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193792.1 samtools variation 2411 2411 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193792.1 samtools variation 18749 18749 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193792.1 samtools variation 36985 36985 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL193792.1 samtools variation 104028 104028 . . . alleles " A C"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; unknown ; N/A GL193792.1 samtools variation 136482 136482 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193792.1 samtools variation 137464 137464 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193792.1 samtools variation 141795 141795 . . . alleles " T C"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; N/A GL193792.1 samtools variation 175353 175353 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193792.1 samtools variation 204561 204561 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193792.1 samtools variation 205970 205970 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193792.1 samtools variation 229476 229476 . . . alleles " G A"; frequencies " 0.729437229437229 0.270562770562771"; depth 462 ; unknown ; N/A GL193792.1 samtools variation 230267 230267 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193792.1 samtools variation 231116 231116 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193792.1 samtools variation 232582 232582 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193792.1 samtools variation 247401 247401 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 108 ; known ; non-synonymous GL193792.1 samtools variation 254920 254920 . . . alleles " A G"; frequencies " 0.314393939393939 0.685606060606061"; depth 264 ; known ; N/A GL193792.1 samtools variation 254955 254955 . . . alleles " A G"; frequencies " 0.338129496402878 0.661870503597122"; depth 278 ; known ; N/A GL193792.1 samtools variation 256009 256009 . . . alleles " C T"; frequencies " 0.347222222222222 0.652777777777778"; depth 72 ; known ; N/A GL193792.1 samtools variation 299252 299252 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL193792.1 samtools variation 317744 317744 . . . alleles " C T"; frequencies " 0.738738738738739 0.261261261261261"; depth 111 ; known ; N/A GL193792.1 samtools variation 317909 317909 . . . alleles " G A"; frequencies " 0.787878787878788 0.212121212121212"; depth 66 ; unknown ; N/A GL193792.1 samtools variation 325049 325049 . . . alleles " T G"; frequencies " 0.738461538461539 0.261538461538462"; depth 65 ; unknown ; N/A GL193792.1 samtools variation 336888 336888 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193792.1 samtools variation 438897 438897 . . . alleles " T C"; frequencies " 0.791237113402062 0.208762886597938"; depth 388 ; unknown ; N/A GL193792.1 samtools variation 444176 444176 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193792.1 samtools variation 449803 449803 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193792.1 samtools variation 449837 449837 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL193792.1 samtools variation 452984 452984 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL193792.1 samtools variation 453144 453144 . . . alleles " C T"; frequencies " 0.588059701492537 0.4"; depth 335 ; unknown ; synonymous GL193792.1 samtools variation 454199 454199 . . . alleles " C G"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; unknown ; N/A GL193792.1 samtools variation 464224 464224 . . . alleles " G C"; frequencies " 0.691275167785235 0.308724832214765"; depth 298 ; unknown ; N/A GL193792.1 samtools variation 465028 465028 . . . alleles " C T"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL193792.1 samtools variation 482598 482598 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL193793.1 samtools variation 412848 412848 . . . alleles " C T"; frequencies " 0.576470588235294 0.423529411764706"; depth 85 ; known ; synonymous GL193793.1 samtools variation 445701 445701 . . . alleles " T C"; frequencies " 0.741935483870968 0.258064516129032"; depth 93 ; known ; N/A GL193794.1 samtools variation 235960 235960 . . . alleles " G C"; frequencies " 0.277777777777778 0.722222222222222"; depth 36 ; unknown ; N/A GL193794.1 samtools variation 236128 236128 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193794.1 samtools variation 236688 236688 . . . alleles " G A"; frequencies " 0.253333333333333 0.746666666666667"; depth 75 ; unknown ; N/A GL193794.1 samtools variation 251673 251673 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 25 ; known ; synonymous GL193794.1 samtools variation 252878 252878 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; synonymous GL193795.1 samtools variation 447234 447234 . . . alleles " C T"; frequencies " 0.794520547945205 0.205479452054795"; depth 73 ; unknown ; synonymous GL193796.1 samtools variation 110465 110465 . . . alleles " A G"; frequencies " 0.413953488372093 0.586046511627907"; depth 215 ; known ; non-synonymous GL193796.1 samtools variation 112556 112556 . . . alleles " A G"; frequencies " 0.365702479338843 0.634297520661157"; depth 968 ; unknown ; N/A GL193796.1 samtools variation 112719 112719 . . . alleles " T A"; frequencies " 0.648698884758364 0.351301115241636"; depth 538 ; unknown ; N/A GL193796.1 samtools variation 116404 116404 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL193796.1 samtools variation 162580 162580 . . . alleles " A T"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; unknown ; non-synonymous GL193796.1 samtools variation 163497 163497 . . . alleles " T C"; frequencies " 0.641509433962264 0.358490566037736"; depth 53 ; known ; non-synonymous GL193796.1 samtools variation 182856 182856 . . . alleles " C T"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; known ; N/A GL193796.1 samtools variation 184811 184811 . . . alleles " A T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; non-synonymous GL193796.1 samtools variation 185167 185167 . . . alleles " A T"; frequencies " 0.597222222222222 0.402777777777778"; depth 72 ; unknown ; synonymous GL193796.1 samtools variation 190617 190617 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL193796.1 samtools variation 312344 312344 . . . alleles " A T"; frequencies " 0.634615384615385 0.365384615384615"; depth 52 ; known ; N/A GL193796.1 samtools variation 312412 312412 . . . alleles " A G"; frequencies " 0.717391304347826 0.282608695652174"; depth 46 ; unknown ; N/A GL193796.1 samtools variation 312972 312972 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193796.1 samtools variation 321639 321639 . . . alleles " G C"; frequencies " 0.416666666666667 0.583333333333333"; depth 108 ; known ; N/A GL193796.1 samtools variation 366462 366462 . . . alleles " T G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193796.1 samtools variation 396971 396971 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193796.1 samtools variation 400744 400744 . . . alleles " T A"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL193796.1 samtools variation 401604 401604 . . . alleles " G A"; frequencies " 0.79862700228833 0.20137299771167"; depth 437 ; unknown ; synonymous GL193796.1 samtools variation 403705 403705 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193797.1 samtools variation 120671 120671 . . . alleles " C A"; frequencies " 0.602040816326531 0.36734693877551"; depth 98 ; unknown ; N/A GL193797.1 samtools variation 242757 242757 . . . alleles " G T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193797.1 samtools variation 242877 242877 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193797.1 samtools variation 243072 243072 . . . alleles " T A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL193797.1 samtools variation 243077 243077 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL193797.1 samtools variation 243126 243126 . . . alleles " A C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193797.1 samtools variation 243154 243154 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193797.1 samtools variation 243217 243217 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193797.1 samtools variation 243340 243340 . . . alleles " C T"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; known ; N/A GL193797.1 samtools variation 250088 250088 . . . alleles " G A"; frequencies " 0.225806451612903 0.774193548387097"; depth 31 ; known ; synonymous GL193797.1 samtools variation 255042 255042 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 16 ; known ; non-synonymous GL193797.1 samtools variation 263787 263787 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; synonymous GL193797.1 samtools variation 277334 277334 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; non-synonymous GL193797.1 samtools variation 279677 279677 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; synonymous GL193797.1 samtools variation 279856 279856 . . . alleles " T C"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; known ; non-synonymous GL193797.1 samtools variation 280008 280008 . . . alleles " C T"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; non-synonymous GL193797.1 samtools variation 293088 293088 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193797.1 samtools variation 293157 293157 . . . alleles " A C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193797.1 samtools variation 295858 295858 . . . alleles " T C"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL193797.1 samtools variation 298209 298209 . . . alleles " A T"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL193797.1 samtools variation 356700 356700 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL193797.1 samtools variation 360365 360365 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193797.1 samtools variation 363650 363650 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193797.1 samtools variation 365493 365493 . . . alleles " G T"; frequencies " 0.65034965034965 0.34965034965035"; depth 143 ; unknown ; N/A GL193797.1 samtools variation 365722 365722 . . . alleles " G A"; frequencies " 0.406417112299465 0.593582887700535"; depth 187 ; unknown ; N/A GL193797.1 samtools variation 366007 366007 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 132 ; unknown ; non-synonymous GL193797.1 samtools variation 366430 366430 . . . alleles " G T"; frequencies " 0.318181818181818 0.681818181818182"; depth 88 ; unknown ; N/A GL193797.1 samtools variation 366866 366866 . . . alleles " C G"; frequencies " 0.282828282828283 0.717171717171717"; depth 198 ; unknown ; N/A GL193797.1 samtools variation 366880 366880 . . . alleles " T G"; frequencies " 0.423809523809524 0.576190476190476"; depth 210 ; unknown ; N/A GL193797.1 samtools variation 368021 368021 . . . alleles " C A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193797.1 samtools variation 372899 372899 . . . alleles " C T"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; unknown ; N/A GL193797.1 samtools variation 384139 384139 . . . alleles " T A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193797.1 samtools variation 384166 384166 . . . alleles " G T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193797.1 samtools variation 385530 385530 . . . alleles " C A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193797.1 samtools variation 386413 386413 . . . alleles " A G"; frequencies " 0.566666666666667 0.4"; depth 30 ; unknown ; non-synonymous GL193797.1 samtools variation 386592 386592 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193797.1 samtools variation 386712 386712 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL193797.1 samtools variation 392659 392659 . . . alleles " G A"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; synonymous GL193797.1 samtools variation 393540 393540 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; synonymous GL193797.1 samtools variation 462975 462975 . . . alleles " C T"; frequencies " 0.575342465753425 0.424657534246575"; depth 73 ; unknown ; synonymous GL193797.1 samtools variation 468352 468352 . . . alleles " T C"; frequencies " 0.291666666666667 0.708333333333333"; depth 72 ; unknown ; synonymous GL193797.1 samtools variation 472086 472086 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193799.1 samtools variation 24188 24188 . . . alleles " G A"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; N/A GL193799.1 samtools variation 24474 24474 . . . alleles " C T"; frequencies " 0.73972602739726 0.26027397260274"; depth 73 ; known ; N/A GL193799.1 samtools variation 24721 24721 . . . alleles " A G"; frequencies " 0.67816091954023 0.32183908045977"; depth 87 ; unknown ; N/A GL193799.1 samtools variation 24725 24725 . . . alleles " T C"; frequencies " 0.674418604651163 0.325581395348837"; depth 86 ; unknown ; N/A GL193799.1 samtools variation 25698 25698 . . . alleles " G T"; frequencies " 0.532142857142857 0.467857142857143"; depth 1120 ; unknown ; non-synonymous GL193799.1 samtools variation 25719 25719 . . . alleles " T A"; frequencies " 0.550353356890459 0.449646643109541"; depth 1132 ; unknown ; non-synonymous GL193799.1 samtools variation 26212 26212 . . . alleles " G A"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; known ; N/A GL193799.1 samtools variation 26837 26837 . . . alleles " T G"; frequencies " 0.222222222222222 0.777777777777778"; depth 63 ; unknown ; N/A GL193799.1 samtools variation 27558 27558 . . . alleles " C T"; frequencies " 0.759920634920635 0.240079365079365"; depth 504 ; known ; synonymous GL193799.1 samtools variation 27706 27706 . . . alleles " C G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193799.1 samtools variation 29349 29349 . . . alleles " C A"; frequencies " 0.700218818380744 0.299781181619256"; depth 457 ; unknown ; N/A GL193799.1 samtools variation 32011 32011 . . . alleles " G A"; frequencies " 0.683168316831683 0.316831683168317"; depth 101 ; unknown ; N/A GL193799.1 samtools variation 32057 32057 . . . alleles " G T"; frequencies " 0.789473684210526 0.210526315789474"; depth 95 ; unknown ; N/A GL193799.1 samtools variation 44109 44109 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193799.1 samtools variation 44118 44118 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL193799.1 samtools variation 45890 45890 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 49 ; unknown ; N/A GL193799.1 samtools variation 104270 104270 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 77 ; unknown ; N/A GL193799.1 samtools variation 104927 104927 . . . alleles " T C"; frequencies " 0.544117647058823 0.455882352941176"; depth 68 ; unknown ; N/A GL193799.1 samtools variation 105386 105386 . . . alleles " C G"; frequencies " 0.567703109327984 0.432296890672016"; depth 997 ; known ; N/A GL193799.1 samtools variation 105409 105409 . . . alleles " C T"; frequencies " 0.337088388214905 0.662911611785095"; depth 1154 ; unknown ; N/A GL193799.1 samtools variation 107631 107631 . . . alleles " C A"; frequencies " 0.32 0.68"; depth 25 ; known ; N/A GL193799.1 samtools variation 124732 124732 . . . alleles " C T"; frequencies " 0.452830188679245 0.547169811320755"; depth 53 ; unknown ; N/A GL193799.1 samtools variation 125144 125144 . . . alleles " T A"; frequencies " 0.756198347107438 0.243801652892562"; depth 242 ; unknown ; non-synonymous GL193799.1 samtools variation 125145 125145 . . . alleles " C A"; frequencies " 0.758333333333333 0.241666666666667"; depth 240 ; unknown ; N/A GL193799.1 samtools variation 125171 125171 . . . alleles " A T"; frequencies " 0.327586206896552 0.672413793103448"; depth 174 ; unknown ; non-synonymous GL193799.1 samtools variation 125305 125305 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; N/A GL193799.1 samtools variation 125606 125606 . . . alleles " T C"; frequencies " 0.62 0.38"; depth 50 ; unknown ; N/A GL193799.1 samtools variation 126409 126409 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193799.1 samtools variation 127066 127066 . . . alleles " C T"; frequencies " 0.771084337349398 0.228915662650602"; depth 83 ; unknown ; N/A GL193799.1 samtools variation 182964 182964 . . . alleles " G A"; frequencies " 0.736842105263158 0.260651629072682"; depth 399 ; known ; non-synonymous GL193799.1 samtools variation 183304 183304 . . . alleles " G T"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL193799.1 samtools variation 183331 183331 . . . alleles " C A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL193799.1 samtools variation 183584 183584 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL193799.1 samtools variation 184461 184461 . . . alleles " T C"; frequencies " 0.778947368421053 0.221052631578947"; depth 95 ; known ; N/A GL193799.1 samtools variation 189429 189429 . . . alleles " T C"; frequencies " 0.53125 0.46875"; depth 32 ; known ; N/A GL193799.1 samtools variation 191898 191898 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 48 ; unknown ; N/A GL193799.1 samtools variation 194091 194091 . . . alleles " A C"; frequencies " 0.577464788732394 0.422535211267606"; depth 71 ; known ; N/A GL193799.1 samtools variation 194196 194196 . . . alleles " T A"; frequencies " 0.581577860388269 0.418009087154069"; depth 2421 ; known ; N/A GL193799.1 samtools variation 194307 194307 . . . alleles " G A"; frequencies " 0.768824306472919 0.231175693527081"; depth 3785 ; unknown ; N/A GL193799.1 samtools variation 238650 238650 . . . alleles " G A"; frequencies " 0.477272727272727 0.522727272727273"; depth 44 ; unknown ; N/A GL193799.1 samtools variation 239793 239793 . . . alleles " A C"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; known ; N/A GL193800.1 samtools variation 64131 64131 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193800.1 samtools variation 127324 127324 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193800.1 samtools variation 127995 127995 . . . alleles " A G"; frequencies " 0.229166666666667 0.770833333333333"; depth 144 ; known ; synonymous GL193800.1 samtools variation 142574 142574 . . . alleles " T G"; frequencies " 0.482758620689655 0.517241379310345"; depth 58 ; known ; N/A GL193800.1 samtools variation 187537 187537 . . . alleles " C G"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; known ; non-synonymous GL193800.1 samtools variation 197109 197109 . . . alleles " C A"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL193800.1 samtools variation 217726 217726 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193800.1 samtools variation 426627 426627 . . . alleles " C T"; frequencies " 0.529680365296804 0.470319634703196"; depth 219 ; known ; synonymous GL193801.1 samtools variation 269894 269894 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; synonymous GL193802.1 samtools variation 83020 83020 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL193802.1 samtools variation 91121 91121 . . . alleles " C G"; frequencies " 0.481400437636761 0.518599562363239"; depth 457 ; unknown ; N/A GL193802.1 samtools variation 103243 103243 . . . alleles " A G"; frequencies " 0.465116279069767 0.534883720930233"; depth 43 ; unknown ; N/A GL193802.1 samtools variation 103997 103997 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL193802.1 samtools variation 104059 104059 . . . alleles " T C"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL193802.1 samtools variation 105358 105358 . . . alleles " C T"; frequencies " 0.48394495412844 0.51605504587156"; depth 872 ; unknown ; non-synonymous GL193802.1 samtools variation 105880 105880 . . . alleles " T C"; frequencies " 0.253846153846154 0.746153846153846"; depth 130 ; unknown ; N/A GL193802.1 samtools variation 106175 106175 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 48 ; unknown ; N/A GL193802.1 samtools variation 107487 107487 . . . alleles " G A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL193802.1 samtools variation 108864 108864 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL193802.1 samtools variation 109075 109075 . . . alleles " T C"; frequencies " 0.382352941176471 0.617647058823529"; depth 68 ; unknown ; N/A GL193802.1 samtools variation 110172 110172 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; known ; N/A GL193802.1 samtools variation 111440 111440 . . . alleles " T A"; frequencies " 0.471698113207547 0.528301886792453"; depth 53 ; unknown ; N/A GL193802.1 samtools variation 111461 111461 . . . alleles " G A"; frequencies " 0.263157894736842 0.736842105263158"; depth 38 ; known ; N/A GL193802.1 samtools variation 111660 111660 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 75 ; known ; N/A GL193802.1 samtools variation 113868 113868 . . . alleles " C T"; frequencies " 0.487544483985765 0.512455516014235"; depth 562 ; unknown ; synonymous GL193802.1 samtools variation 115361 115361 . . . alleles " G C"; frequencies " 0.48 0.52"; depth 25 ; known ; N/A GL193802.1 samtools variation 116292 116292 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193802.1 samtools variation 116943 116943 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; known ; N/A GL193802.1 samtools variation 117354 117354 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 33 ; known ; N/A GL193802.1 samtools variation 120075 120075 . . . alleles " G T"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; known ; N/A GL193802.1 samtools variation 120147 120147 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL193802.1 samtools variation 120214 120214 . . . alleles " G A"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL193802.1 samtools variation 121400 121400 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL193802.1 samtools variation 123620 123620 . . . alleles " C T"; frequencies " 0.240506329113924 0.759493670886076"; depth 79 ; known ; N/A GL193802.1 samtools variation 125260 125260 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL193802.1 samtools variation 125414 125414 . . . alleles " G A"; frequencies " 0.652259332023576 0.347740667976424"; depth 509 ; known ; synonymous GL193802.1 samtools variation 125999 125999 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL193802.1 samtools variation 131067 131067 . . . alleles " G A"; frequencies " 0.784810126582278 0.215189873417722"; depth 474 ; known ; synonymous GL193802.1 samtools variation 131094 131094 . . . alleles " A G"; frequencies " 0.240963855421687 0.759036144578313"; depth 415 ; unknown ; synonymous GL193802.1 samtools variation 144088 144088 . . . alleles " T G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL193802.1 samtools variation 150623 150623 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193802.1 samtools variation 155062 155062 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 232 ; unknown ; synonymous GL193802.1 samtools variation 159179 159179 . . . alleles " C A"; frequencies " 0.772413793103448 0.227586206896552"; depth 145 ; unknown ; synonymous GL193802.1 samtools variation 163357 163357 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL193802.1 samtools variation 172418 172418 . . . alleles " G A"; frequencies " 0.324022346368715 0.675977653631285"; depth 179 ; known ; non-synonymous GL193802.1 samtools variation 172450 172450 . . . alleles " G A"; frequencies " 0.326086956521739 0.673913043478261"; depth 184 ; known ; synonymous GL193802.1 samtools variation 172480 172480 . . . alleles " C T"; frequencies " 0.342281879194631 0.657718120805369"; depth 149 ; known ; synonymous GL193802.1 samtools variation 172997 172997 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 42 ; unknown ; N/A GL193802.1 samtools variation 175277 175277 . . . alleles " G T"; frequencies " 0.795665634674923 0.204334365325077"; depth 646 ; unknown ; non-synonymous GL193802.1 samtools variation 181388 181388 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193802.1 samtools variation 189921 189921 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 126 ; known ; non-synonymous GL193802.1 samtools variation 199550 199550 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL193802.1 samtools variation 200627 200627 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193802.1 samtools variation 205325 205325 . . . alleles " C T"; frequencies " 0.300724637681159 0.699275362318841"; depth 276 ; known ; non-synonymous GL193802.1 samtools variation 208879 208879 . . . alleles " C T"; frequencies " 0.76056338028169 0.23943661971831"; depth 142 ; known ; non-synonymous GL193802.1 samtools variation 208981 208981 . . . alleles " T C"; frequencies " 0.23021582733813 0.76978417266187"; depth 139 ; known ; non-synonymous GL193802.1 samtools variation 209077 209077 . . . alleles " T C"; frequencies " 0.669172932330827 0.330827067669173"; depth 133 ; known ; non-synonymous GL193802.1 samtools variation 216490 216490 . . . alleles " C A"; frequencies " 0.557046979865772 0.442953020134228"; depth 149 ; unknown ; non-synonymous GL193802.1 samtools variation 222125 222125 . . . alleles " C T"; frequencies " 0.340909090909091 0.659090909090909"; depth 132 ; known ; synonymous GL193802.1 samtools variation 222814 222814 . . . alleles " C T"; frequencies " 0.684615384615385 0.315384615384615"; depth 130 ; known ; non-synonymous GL193802.1 samtools variation 224655 224655 . . . alleles " G A"; frequencies " 0.754098360655738 0.245901639344262"; depth 122 ; known ; synonymous GL193802.1 samtools variation 225666 225666 . . . alleles " G A"; frequencies " 0.262135922330097 0.737864077669903"; depth 103 ; known ; synonymous GL193802.1 samtools variation 225746 225746 . . . alleles " G T"; frequencies " 0.257731958762887 0.742268041237113"; depth 97 ; known ; non-synonymous GL193802.1 samtools variation 242022 242022 . . . alleles " T A"; frequencies " 0.769230769230769 0.230769230769231"; depth 78 ; known ; non-synonymous GL193802.1 samtools variation 248493 248493 . . . alleles " G T"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL193802.1 samtools variation 254267 254267 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193802.1 samtools variation 255121 255121 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193802.1 samtools variation 255285 255285 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193802.1 samtools variation 262547 262547 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL193802.1 samtools variation 264006 264006 . . . alleles " A G"; frequencies " 0.380530973451327 0.619469026548673"; depth 113 ; unknown ; N/A GL193802.1 samtools variation 267284 267284 . . . alleles " A T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL193802.1 samtools variation 268645 268645 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193802.1 samtools variation 268867 268867 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193802.1 samtools variation 269083 269083 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193802.1 samtools variation 320721 320721 . . . alleles " C G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL193804.1 samtools variation 349298 349298 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; synonymous GL193804.1 samtools variation 352815 352815 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193804.1 samtools variation 363854 363854 . . . alleles " G A"; frequencies " 0.630769230769231 0.369230769230769"; depth 65 ; unknown ; synonymous GL193804.1 samtools variation 369051 369051 . . . alleles " A G"; frequencies " 0.450980392156863 0.549019607843137"; depth 102 ; known ; synonymous GL193805.1 samtools variation 264798 264798 . . . alleles " T C"; frequencies " 0.679611650485437 0.320388349514563"; depth 103 ; unknown ; N/A GL193805.1 samtools variation 265381 265381 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 42 ; unknown ; N/A GL193805.1 samtools variation 338200 338200 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; non-synonymous GL193805.1 samtools variation 393909 393909 . . . alleles " T G"; frequencies " 0.351111111111111 0.648888888888889"; depth 225 ; unknown ; N/A GL193805.1 samtools variation 395114 395114 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193805.1 samtools variation 395913 395913 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193805.1 samtools variation 403405 403405 . . . alleles " C T"; frequencies " 0.715909090909091 0.284090909090909"; depth 88 ; unknown ; synonymous GL193805.1 samtools variation 403418 403418 . . . alleles " G A"; frequencies " 0.7125 0.2875"; depth 80 ; unknown ; non-synonymous GL193805.1 samtools variation 404085 404085 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 96 ; unknown ; N/A GL193805.1 samtools variation 404262 404262 . . . alleles " A G"; frequencies " 0.604651162790698 0.395348837209302"; depth 86 ; unknown ; N/A GL193805.1 samtools variation 404313 404313 . . . alleles " C T"; frequencies " 0.574257425742574 0.425742574257426"; depth 101 ; unknown ; N/A GL193805.1 samtools variation 404462 404462 . . . alleles " T C"; frequencies " 0.56390977443609 0.43609022556391"; depth 266 ; unknown ; N/A GL193805.1 samtools variation 404528 404528 . . . alleles " C T"; frequencies " 0.599439775910364 0.400560224089636"; depth 357 ; unknown ; N/A GL193805.1 samtools variation 404826 404826 . . . alleles " T G"; frequencies " 0.56353591160221 0.43646408839779"; depth 362 ; unknown ; N/A GL193805.1 samtools variation 404854 404854 . . . alleles " A G"; frequencies " 0.576842105263158 0.423157894736842"; depth 475 ; unknown ; N/A GL193805.1 samtools variation 404976 404976 . . . alleles " A G"; frequencies " 0.649746192893401 0.350253807106599"; depth 197 ; unknown ; N/A GL193805.1 samtools variation 404991 404991 . . . alleles " T C"; frequencies " 0.636842105263158 0.363157894736842"; depth 190 ; unknown ; N/A GL193805.1 samtools variation 405732 405732 . . . alleles " A G"; frequencies " 0.717761557177616 0.282238442822384"; depth 411 ; unknown ; N/A GL193805.1 samtools variation 405850 405850 . . . alleles " G A"; frequencies " 0.786363636363636 0.213636363636364"; depth 220 ; unknown ; N/A GL193805.1 samtools variation 406040 406040 . . . alleles " T C"; frequencies " 0.581176470588235 0.418823529411765"; depth 425 ; unknown ; N/A GL193805.1 samtools variation 406094 406094 . . . alleles " G A"; frequencies " 0.600732600732601 0.399267399267399"; depth 273 ; unknown ; N/A GL193805.1 samtools variation 428329 428329 . . . alleles " G A"; frequencies " 0.223776223776224 0.776223776223776"; depth 1001 ; unknown ; non-synonymous GL193806.1 samtools variation 444399 444399 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL193806.1 samtools variation 444768 444768 . . . alleles " T C"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; known ; N/A GL193806.1 samtools variation 444910 444910 . . . alleles " C G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL193806.1 samtools variation 445017 445017 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL193806.1 samtools variation 445055 445055 . . . alleles " T A"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193806.1 samtools variation 445153 445153 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL193806.1 samtools variation 445156 445156 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL193810.1 samtools variation 31562 31562 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193810.1 samtools variation 146755 146755 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 52 ; unknown ; N/A GL193810.1 samtools variation 159599 159599 . . . alleles " G A"; frequencies " 0.721649484536082 0.278350515463918"; depth 97 ; unknown ; N/A GL193810.1 samtools variation 348871 348871 . . . alleles " C T"; frequencies " 0.224137931034483 0.775862068965517"; depth 58 ; unknown ; synonymous GL193810.1 samtools variation 459290 459290 . . . alleles " A G"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL193812.1 samtools variation 112727 112727 . . . alleles " G A"; frequencies " 0.797385620915033 0.202614379084967"; depth 153 ; unknown ; non-synonymous GL193812.1 samtools variation 113842 113842 . . . alleles " G C"; frequencies " 0.720338983050847 0.279661016949153"; depth 118 ; unknown ; N/A GL193812.1 samtools variation 122478 122478 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193812.1 samtools variation 123266 123266 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL193812.1 samtools variation 125452 125452 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193812.1 samtools variation 181210 181210 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193812.1 samtools variation 183397 183397 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL193812.1 samtools variation 183573 183573 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL193812.1 samtools variation 183644 183644 . . . alleles " T C"; frequencies " 0.387755102040816 0.612244897959184"; depth 49 ; known ; N/A GL193812.1 samtools variation 183903 183903 . . . alleles " A G"; frequencies " 0.71830985915493 0.28169014084507"; depth 71 ; known ; N/A GL193812.1 samtools variation 184362 184362 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL193812.1 samtools variation 184377 184377 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 30 ; unknown ; N/A GL193812.1 samtools variation 184882 184882 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL193812.1 samtools variation 184991 184991 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; known ; N/A GL193812.1 samtools variation 185082 185082 . . . alleles " C T"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL193812.1 samtools variation 185192 185192 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL193812.1 samtools variation 185564 185564 . . . alleles " T A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193812.1 samtools variation 186332 186332 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL193812.1 samtools variation 186584 186584 . . . alleles " C G"; frequencies " 0.779220779220779 0.220779220779221"; depth 77 ; unknown ; N/A GL193812.1 samtools variation 186587 186587 . . . alleles " A G"; frequencies " 0.758620689655172 0.241379310344828"; depth 87 ; unknown ; N/A GL193812.1 samtools variation 186982 186982 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL193812.1 samtools variation 187055 187055 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL193812.1 samtools variation 187181 187181 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; known ; N/A GL193812.1 samtools variation 189107 189107 . . . alleles " T A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL193812.1 samtools variation 190114 190114 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193812.1 samtools variation 190323 190323 . . . alleles " G A"; frequencies " 0.688888888888889 0.311111111111111"; depth 45 ; known ; N/A GL193813.1 samtools variation 140173 140173 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193813.1 samtools variation 225496 225496 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193813.1 samtools variation 244970 244970 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL193813.1 samtools variation 288104 288104 . . . alleles " C T"; frequencies " 0.464052287581699 0.535947712418301"; depth 153 ; known ; synonymous GL193813.1 samtools variation 339670 339670 . . . alleles " G T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193813.1 samtools variation 340829 340829 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193813.1 samtools variation 342724 342724 . . . alleles " G T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193813.1 samtools variation 348903 348903 . . . alleles " C A"; frequencies " 0.675496688741722 0.324503311258278"; depth 151 ; unknown ; synonymous GL193813.1 samtools variation 348924 348924 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 108 ; unknown ; synonymous GL193813.1 samtools variation 350043 350043 . . . alleles " C A"; frequencies " 0.638297872340426 0.361702127659574"; depth 47 ; unknown ; N/A GL193813.1 samtools variation 361417 361417 . . . alleles " T G"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; known ; N/A GL193813.1 samtools variation 362570 362570 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL193813.1 samtools variation 407292 407292 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193813.1 samtools variation 410226 410226 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193813.1 samtools variation 411075 411075 . . . alleles " G A"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; N/A GL193813.1 samtools variation 411165 411165 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193813.1 samtools variation 411479 411479 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193813.1 samtools variation 411815 411815 . . . alleles " C A"; frequencies " 0.788235294117647 0.211764705882353"; depth 85 ; unknown ; N/A GL193813.1 samtools variation 411874 411874 . . . alleles " C T"; frequencies " 0.794871794871795 0.205128205128205"; depth 117 ; unknown ; N/A GL193813.1 samtools variation 411943 411943 . . . alleles " C T"; frequencies " 0.762135922330097 0.237864077669903"; depth 206 ; unknown ; N/A GL193813.1 samtools variation 411980 411980 . . . alleles " T C"; frequencies " 0.755364806866953 0.244635193133047"; depth 233 ; unknown ; N/A GL193813.1 samtools variation 412138 412138 . . . alleles " T C"; frequencies " 0.75609756097561 0.24390243902439"; depth 205 ; unknown ; N/A GL193813.1 samtools variation 412617 412617 . . . alleles " A G"; frequencies " 0.753676470588235 0.246323529411765"; depth 272 ; unknown ; N/A GL193813.1 samtools variation 412999 412999 . . . alleles " C T"; frequencies " 0.771812080536913 0.228187919463087"; depth 149 ; unknown ; N/A GL193813.1 samtools variation 413140 413140 . . . alleles " G A"; frequencies " 0.793248945147679 0.206751054852321"; depth 474 ; unknown ; N/A GL193813.1 samtools variation 413184 413184 . . . alleles " G C"; frequencies " 0.750413223140496 0.249586776859504"; depth 605 ; unknown ; N/A GL193814.1 samtools variation 13930 13930 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193814.1 samtools variation 28454 28454 . . . alleles " G C"; frequencies " 0.709844559585492 0.290155440414508"; depth 193 ; known ; non-synonymous GL193815.1 samtools variation 198792 198792 . . . alleles " C T"; frequencies " 0.736111111111111 0.263888888888889"; depth 72 ; unknown ; N/A GL193815.1 samtools variation 202983 202983 . . . alleles " T C"; frequencies " 0.459459459459459 0.540540540540541"; depth 74 ; unknown ; N/A GL193816.1 samtools variation 216949 216949 . . . alleles " G T"; frequencies " 0.658536585365854 0.341463414634146"; depth 41 ; unknown ; non-synonymous GL193816.1 samtools variation 217934 217934 . . . alleles " A G"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; synonymous GL193816.1 samtools variation 221813 221813 . . . alleles " C T"; frequencies " 0.506849315068493 0.493150684931507"; depth 73 ; unknown ; N/A GL193816.1 samtools variation 222589 222589 . . . alleles " T C"; frequencies " 0.658536585365854 0.341463414634146"; depth 205 ; known ; N/A GL193816.1 samtools variation 223226 223226 . . . alleles " A G"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL193816.1 samtools variation 224247 224247 . . . alleles " C T"; frequencies " 0.559701492537313 0.440298507462687"; depth 268 ; unknown ; N/A GL193816.1 samtools variation 226596 226596 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193816.1 samtools variation 233810 233810 . . . alleles " A C"; frequencies " 0.35 0.65"; depth 60 ; known ; N/A GL193816.1 samtools variation 235230 235230 . . . alleles " G A"; frequencies " 0.649122807017544 0.350877192982456"; depth 57 ; unknown ; N/A GL193816.1 samtools variation 236513 236513 . . . alleles " G T"; frequencies " 0.305263157894737 0.694736842105263"; depth 190 ; known ; N/A GL193816.1 samtools variation 238872 238872 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL193816.1 samtools variation 324277 324277 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193816.1 samtools variation 429506 429506 . . . alleles " A T"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL193816.1 samtools variation 430226 430226 . . . alleles " G C"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; known ; N/A GL193816.1 samtools variation 437060 437060 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL193817.1 samtools variation 399098 399098 . . . alleles " T A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL193818.1 samtools variation 227618 227618 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 28 ; unknown ; synonymous GL193818.1 samtools variation 228527 228527 . . . alleles " A T"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL193819.1 samtools variation 6473 6473 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 65 ; unknown ; N/A GL193819.1 samtools variation 6953 6953 . . . alleles " C G"; frequencies " 0.759259259259259 0.240740740740741"; depth 162 ; unknown ; N/A GL193819.1 samtools variation 7165 7165 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 132 ; unknown ; N/A GL193819.1 samtools variation 7292 7292 . . . alleles " T C"; frequencies " 0.556179775280899 0.443820224719101"; depth 178 ; unknown ; N/A GL193819.1 samtools variation 7394 7394 . . . alleles " T C"; frequencies " 0.71551724137931 0.28448275862069"; depth 116 ; unknown ; N/A GL193819.1 samtools variation 7396 7396 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 112 ; unknown ; N/A GL193819.1 samtools variation 23097 23097 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193819.1 samtools variation 66156 66156 . . . alleles " T A"; frequencies " 0.680555555555556 0.319444444444444"; depth 72 ; unknown ; synonymous GL193819.1 samtools variation 74708 74708 . . . alleles " C T"; frequencies " 0.692857142857143 0.307142857142857"; depth 140 ; unknown ; synonymous GL193819.1 samtools variation 179619 179619 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193819.1 samtools variation 229070 229070 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193822.1 samtools variation 411736 411736 . . . alleles " C T"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; non-synonymous GL193822.1 samtools variation 425959 425959 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193823.1 samtools variation 357041 357041 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 105 ; unknown ; non-synonymous GL193823.1 samtools variation 357637 357637 . . . alleles " C A"; frequencies " 0.77027027027027 0.22972972972973"; depth 74 ; unknown ; non-synonymous GL193823.1 samtools variation 372500 372500 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193823.1 samtools variation 428230 428230 . . . alleles " T C"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; known ; non-synonymous GL193825.1 samtools variation 49710 49710 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193825.1 samtools variation 67259 67259 . . . alleles " G A"; frequencies " 0.725118483412322 0.274881516587678"; depth 211 ; unknown ; N/A GL193825.1 samtools variation 67394 67394 . . . alleles " C T"; frequencies " 0.575 0.425"; depth 40 ; unknown ; N/A GL193825.1 samtools variation 68699 68699 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 51 ; known ; N/A GL193825.1 samtools variation 68767 68767 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL193825.1 samtools variation 68816 68816 . . . alleles " G A"; frequencies " 0.238095238095238 0.761904761904762"; depth 63 ; known ; N/A GL193825.1 samtools variation 69021 69021 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 99 ; known ; N/A GL193825.1 samtools variation 70865 70865 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; unknown ; N/A GL193825.1 samtools variation 83616 83616 . . . alleles " C T"; frequencies " 0.554455445544555 0.445544554455446"; depth 101 ; unknown ; non-synonymous GL193825.1 samtools variation 94593 94593 . . . alleles " A G"; frequencies " 0.547169811320755 0.452830188679245"; depth 106 ; known ; synonymous GL193825.1 samtools variation 151399 151399 . . . alleles " T C"; frequencies " 0.78125 0.21875"; depth 32 ; known ; N/A GL193825.1 samtools variation 186083 186083 . . . alleles " G A"; frequencies " 0.765957446808511 0.234042553191489"; depth 47 ; unknown ; N/A GL193825.1 samtools variation 186396 186396 . . . alleles " C A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL193825.1 samtools variation 217475 217475 . . . alleles " A G"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL193825.1 samtools variation 218436 218436 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193825.1 samtools variation 227683 227683 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193825.1 samtools variation 227713 227713 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193825.1 samtools variation 271594 271594 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; known ; non-synonymous GL193827.1 samtools variation 28508 28508 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193827.1 samtools variation 39717 39717 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193827.1 samtools variation 39805 39805 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193827.1 samtools variation 40071 40071 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL193827.1 samtools variation 40290 40290 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL193827.1 samtools variation 44397 44397 . . . alleles " T G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193827.1 samtools variation 45196 45196 . . . alleles " A C"; frequencies " 0.441176470588235 0.558823529411765"; depth 68 ; unknown ; synonymous GL193827.1 samtools variation 47681 47681 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193827.1 samtools variation 51718 51718 . . . alleles " C G"; frequencies " 0.403225806451613 0.596774193548387"; depth 124 ; known ; synonymous GL193827.1 samtools variation 90320 90320 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL193827.1 samtools variation 90329 90329 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL193827.1 samtools variation 145052 145052 . . . alleles " T C"; frequencies " 0.642352941176471 0.357647058823529"; depth 425 ; known ; synonymous GL193827.1 samtools variation 160229 160229 . . . alleles " A G"; frequencies " 0.296296296296296 0.703703703703704"; depth 189 ; known ; N/A GL193827.1 samtools variation 169857 169857 . . . alleles " C G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL193827.1 samtools variation 176094 176094 . . . alleles " A C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL193827.1 samtools variation 180368 180368 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 32 ; known ; N/A GL193827.1 samtools variation 180915 180915 . . . alleles " G A"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL193827.1 samtools variation 181133 181133 . . . alleles " A C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193827.1 samtools variation 181664 181664 . . . alleles " T A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; N/A GL193827.1 samtools variation 182009 182009 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 65 ; known ; N/A GL193827.1 samtools variation 183696 183696 . . . alleles " A G"; frequencies " 0.425 0.575"; depth 40 ; known ; N/A GL193827.1 samtools variation 183849 183849 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 82 ; known ; N/A GL193827.1 samtools variation 184101 184101 . . . alleles " C G"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL193827.1 samtools variation 195959 195959 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 117 ; known ; N/A GL193827.1 samtools variation 198039 198039 . . . alleles " G A"; frequencies " 0.414634146341463 0.585365853658537"; depth 41 ; unknown ; N/A GL193827.1 samtools variation 200438 200438 . . . alleles " C T"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; known ; N/A GL193827.1 samtools variation 202625 202625 . . . alleles " C A"; frequencies " 0.2 0.8"; depth 45 ; known ; N/A GL193827.1 samtools variation 204836 204836 . . . alleles " T G"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; known ; N/A GL193827.1 samtools variation 205747 205747 . . . alleles " T C"; frequencies " 0.668621700879765 0.331378299120235"; depth 341 ; known ; synonymous GL193827.1 samtools variation 212260 212260 . . . alleles " G A"; frequencies " 0.579310344827586 0.420689655172414"; depth 290 ; unknown ; N/A GL193827.1 samtools variation 214038 214038 . . . alleles " C T"; frequencies " 0.612009237875289 0.387990762124711"; depth 433 ; unknown ; non-synonymous GL193827.1 samtools variation 214175 214175 . . . alleles " A G"; frequencies " 0.397297297297297 0.602702702702703"; depth 740 ; known ; synonymous GL193827.1 samtools variation 214719 214719 . . . alleles " A G"; frequencies " 0.570796460176991 0.429203539823009"; depth 678 ; unknown ; synonymous GL193827.1 samtools variation 218943 218943 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193827.1 samtools variation 223842 223842 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193827.1 samtools variation 228398 228398 . . . alleles " G T"; frequencies " 0.714285714285714 0.285714285714286"; depth 56 ; known ; N/A GL193827.1 samtools variation 229917 229917 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL193827.1 samtools variation 235581 235581 . . . alleles " T C"; frequencies " 0.450980392156863 0.549019607843137"; depth 51 ; unknown ; N/A GL193827.1 samtools variation 236459 236459 . . . alleles " G A"; frequencies " 0.478599221789883 0.521400778210117"; depth 257 ; known ; N/A GL193827.1 samtools variation 237716 237716 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 50 ; unknown ; N/A GL193827.1 samtools variation 237719 237719 . . . alleles " A C"; frequencies " 0.387755102040816 0.612244897959184"; depth 49 ; unknown ; N/A GL193827.1 samtools variation 238743 238743 . . . alleles " T C"; frequencies " 0.661290322580645 0.338709677419355"; depth 930 ; unknown ; synonymous GL193827.1 samtools variation 239089 239089 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; known ; N/A GL193827.1 samtools variation 239148 239148 . . . alleles " T C"; frequencies " 0.439024390243902 0.560975609756098"; depth 41 ; unknown ; N/A GL193827.1 samtools variation 239251 239251 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 42 ; unknown ; N/A GL193827.1 samtools variation 239282 239282 . . . alleles " T A"; frequencies " 0.4 0.6"; depth 30 ; unknown ; N/A GL193827.1 samtools variation 241068 241068 . . . alleles " C T"; frequencies " 0.591194968553459 0.408805031446541"; depth 477 ; unknown ; N/A GL193827.1 samtools variation 241204 241204 . . . alleles " G A"; frequencies " 0.624087591240876 0.375912408759124"; depth 548 ; unknown ; N/A GL193827.1 samtools variation 241248 241248 . . . alleles " A G"; frequencies " 0.572043010752688 0.427956989247312"; depth 465 ; unknown ; N/A GL193827.1 samtools variation 242813 242813 . . . alleles " C T"; frequencies " 0.579804560260586 0.420195439739414"; depth 307 ; known ; N/A GL193827.1 samtools variation 242877 242877 . . . alleles " C T"; frequencies " 0.600529100529101 0.399470899470899"; depth 378 ; unknown ; N/A GL193827.1 samtools variation 243740 243740 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; unknown ; N/A GL193827.1 samtools variation 243836 243836 . . . alleles " G A"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; known ; N/A GL193827.1 samtools variation 243930 243930 . . . alleles " A T"; frequencies " 0.655737704918033 0.344262295081967"; depth 61 ; unknown ; N/A GL193827.1 samtools variation 244069 244069 . . . alleles " G T"; frequencies " 0.584905660377358 0.415094339622642"; depth 53 ; unknown ; N/A GL193827.1 samtools variation 244136 244136 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193827.1 samtools variation 244174 244174 . . . alleles " A T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193827.1 samtools variation 244201 244201 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193827.1 samtools variation 244486 244486 . . . alleles " G A"; frequencies " 0.640488656195462 0.359511343804538"; depth 573 ; unknown ; synonymous GL193827.1 samtools variation 247020 247020 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 30 ; known ; N/A GL193827.1 samtools variation 253043 253043 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 65 ; unknown ; N/A GL193827.1 samtools variation 253047 253047 . . . alleles " A C"; frequencies " 0.603174603174603 0.396825396825397"; depth 63 ; unknown ; N/A GL193827.1 samtools variation 254126 254126 . . . alleles " T G"; frequencies " 0.725 0.275"; depth 80 ; unknown ; N/A GL193827.1 samtools variation 255566 255566 . . . alleles " T C"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL193827.1 samtools variation 255933 255933 . . . alleles " G T"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; unknown ; N/A GL193827.1 samtools variation 256574 256574 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 55 ; unknown ; N/A GL193827.1 samtools variation 256629 256629 . . . alleles " G C"; frequencies " 0.765625 0.234375"; depth 64 ; unknown ; N/A GL193827.1 samtools variation 256907 256907 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193827.1 samtools variation 256986 256986 . . . alleles " G A"; frequencies " 0.361111111111111 0.638888888888889"; depth 36 ; unknown ; N/A GL193827.1 samtools variation 257667 257667 . . . alleles " A G"; frequencies " 0.347826086956522 0.652173913043478"; depth 46 ; unknown ; N/A GL193827.1 samtools variation 257695 257695 . . . alleles " C T"; frequencies " 0.394736842105263 0.605263157894737"; depth 38 ; unknown ; N/A GL193827.1 samtools variation 258997 258997 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193827.1 samtools variation 259388 259388 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193827.1 samtools variation 260061 260061 . . . alleles " C T"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; known ; N/A GL193827.1 samtools variation 260425 260425 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193827.1 samtools variation 262647 262647 . . . alleles " G A"; frequencies " 0.778894472361809 0.221105527638191"; depth 199 ; unknown ; N/A GL193827.1 samtools variation 262678 262678 . . . alleles " T C"; frequencies " 0.74468085106383 0.25531914893617"; depth 235 ; unknown ; N/A GL193827.1 samtools variation 262774 262774 . . . alleles " C A"; frequencies " 0.784615384615385 0.215384615384615"; depth 65 ; unknown ; N/A GL193827.1 samtools variation 263467 263467 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 30 ; known ; N/A GL193827.1 samtools variation 263471 263471 . . . alleles " T C"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL193827.1 samtools variation 264171 264171 . . . alleles " T C"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; known ; N/A GL193827.1 samtools variation 264891 264891 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193827.1 samtools variation 264933 264933 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL193827.1 samtools variation 265125 265125 . . . alleles " C T"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; synonymous GL193827.1 samtools variation 265854 265854 . . . alleles " A G"; frequencies " 0.470198675496689 0.529801324503311"; depth 151 ; known ; synonymous GL193827.1 samtools variation 273152 273152 . . . alleles " G C"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL193827.1 samtools variation 275390 275390 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; synonymous GL193827.1 samtools variation 412501 412501 . . . alleles " A C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193827.1 samtools variation 412564 412564 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193827.1 samtools variation 412644 412644 . . . alleles " C T"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL193827.1 samtools variation 412906 412906 . . . alleles " C G"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL193827.1 samtools variation 413020 413020 . . . alleles " C T"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL193827.1 samtools variation 413105 413105 . . . alleles " C G"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL193827.1 samtools variation 421515 421515 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; non-synonymous GL193827.1 samtools variation 423537 423537 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; non-synonymous GL193827.1 samtools variation 423680 423680 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; synonymous GL193827.1 samtools variation 426779 426779 . . . alleles " T C"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; unknown ; non-synonymous GL193829.1 samtools variation 262038 262038 . . . alleles " A G"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL193834.1 samtools variation 386886 386886 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193834.1 samtools variation 401476 401476 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193834.1 samtools variation 401487 401487 . . . alleles " T A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193834.1 samtools variation 401943 401943 . . . alleles " G C"; frequencies " 0.754098360655738 0.245901639344262"; depth 122 ; unknown ; synonymous GL193834.1 samtools variation 411824 411824 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL193834.1 samtools variation 412266 412266 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL193834.1 samtools variation 412362 412362 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL193835.1 samtools variation 38810 38810 . . . alleles " C T"; frequencies " 0.79253112033195 0.20746887966805"; depth 241 ; known ; synonymous GL193835.1 samtools variation 53656 53656 . . . alleles " G A"; frequencies " 0.580459770114943 0.419540229885057"; depth 174 ; known ; N/A GL193835.1 samtools variation 53988 53988 . . . alleles " T C"; frequencies " 0.282142857142857 0.717857142857143"; depth 280 ; known ; synonymous GL193835.1 samtools variation 54114 54114 . . . alleles " A G"; frequencies " 0.529032258064516 0.470967741935484"; depth 310 ; known ; synonymous GL193835.1 samtools variation 56590 56590 . . . alleles " A G"; frequencies " 0.796238244514107 0.203761755485893"; depth 319 ; unknown ; synonymous GL193835.1 samtools variation 179407 179407 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193835.1 samtools variation 191729 191729 . . . alleles " A C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193835.1 samtools variation 201236 201236 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 49 ; known ; N/A GL193835.1 samtools variation 201249 201249 . . . alleles " G A"; frequencies " 0.673469387755102 0.326530612244898"; depth 49 ; known ; N/A GL193836.1 samtools variation 400533 400533 . . . alleles " G A"; frequencies " 0.409090909090909 0.590909090909091"; depth 418 ; unknown ; non-synonymous GL193836.1 samtools variation 407964 407964 . . . alleles " A T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193836.1 samtools variation 408564 408564 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL193836.1 samtools variation 410201 410201 . . . alleles " G T"; frequencies " 0.763358778625954 0.236641221374046"; depth 131 ; unknown ; N/A GL193836.1 samtools variation 411401 411401 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL193836.1 samtools variation 411525 411525 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL193836.1 samtools variation 412271 412271 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193836.1 samtools variation 412408 412408 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193836.1 samtools variation 412897 412897 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL193837.1 samtools variation 315163 315163 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193837.1 samtools variation 316380 316380 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 38 ; known ; non-synonymous GL193837.1 samtools variation 319292 319292 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; non-synonymous GL193837.1 samtools variation 326357 326357 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 26 ; known ; synonymous GL193837.1 samtools variation 338694 338694 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193838.1 samtools variation 25790 25790 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193838.1 samtools variation 84243 84243 . . . alleles " A G"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL193838.1 samtools variation 125940 125940 . . . alleles " T G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193838.1 samtools variation 125976 125976 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193838.1 samtools variation 129965 129965 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193838.1 samtools variation 133640 133640 . . . alleles " G C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193838.1 samtools variation 135317 135317 . . . alleles " T C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL193838.1 samtools variation 143224 143224 . . . alleles " A G"; frequencies " 0.513513513513513 0.486486486486487"; depth 37 ; unknown ; N/A GL193838.1 samtools variation 143262 143262 . . . alleles " A G"; frequencies " 0.719298245614035 0.280701754385965"; depth 57 ; unknown ; N/A GL193838.1 samtools variation 143399 143399 . . . alleles " G A"; frequencies " 0.726708074534162 0.273291925465839"; depth 161 ; unknown ; N/A GL193838.1 samtools variation 144735 144735 . . . alleles " A C"; frequencies " 0.609756097560976 0.390243902439024"; depth 82 ; unknown ; N/A GL193838.1 samtools variation 145929 145929 . . . alleles " G C"; frequencies " 0.432432432432432 0.567567567567568"; depth 74 ; unknown ; N/A GL193838.1 samtools variation 148172 148172 . . . alleles " A G"; frequencies " 0.436170212765957 0.563829787234043"; depth 94 ; known ; N/A GL193838.1 samtools variation 150425 150425 . . . alleles " C T"; frequencies " 0.649484536082474 0.350515463917526"; depth 97 ; known ; N/A GL193838.1 samtools variation 152113 152113 . . . alleles " A C"; frequencies " 0.373333333333333 0.626666666666667"; depth 75 ; known ; N/A GL193838.1 samtools variation 152380 152380 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 60 ; known ; N/A GL193838.1 samtools variation 153036 153036 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL193838.1 samtools variation 184724 184724 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; synonymous GL193838.1 samtools variation 191043 191043 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; synonymous GL193838.1 samtools variation 204590 204590 . . . alleles " A G"; frequencies " 0.740740740740741 0.259259259259259"; depth 54 ; unknown ; non-synonymous GL193838.1 samtools variation 210007 210007 . . . alleles " A C"; frequencies " 0.65625 0.34375"; depth 96 ; unknown ; non-synonymous GL193838.1 samtools variation 210027 210027 . . . alleles " A G"; frequencies " 0.633802816901408 0.366197183098592"; depth 71 ; unknown ; synonymous GL193838.1 samtools variation 211333 211333 . . . alleles " T A"; frequencies " 0.752941176470588 0.247058823529412"; depth 85 ; unknown ; synonymous GL193838.1 samtools variation 218473 218473 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; synonymous GL193838.1 samtools variation 249811 249811 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193839.1 samtools variation 38741 38741 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193839.1 samtools variation 77597 77597 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL193839.1 samtools variation 87855 87855 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL193839.1 samtools variation 88420 88420 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193839.1 samtools variation 92716 92716 . . . alleles " C A"; frequencies " 0.78921568627451 0.21078431372549"; depth 204 ; unknown ; N/A GL193839.1 samtools variation 121882 121882 . . . alleles " A G"; frequencies " 0.553359683794466 0.446640316205534"; depth 253 ; unknown ; non-synonymous GL193839.1 samtools variation 147226 147226 . . . alleles " C G"; frequencies " 0.522727272727273 0.477272727272727"; depth 44 ; unknown ; N/A GL193839.1 samtools variation 150819 150819 . . . alleles " A C"; frequencies " 0.507537688442211 0.492462311557789"; depth 398 ; unknown ; synonymous GL193839.1 samtools variation 156024 156024 . . . alleles " A C"; frequencies " 0.6875 0.3125"; depth 624 ; unknown ; N/A GL193839.1 samtools variation 291806 291806 . . . alleles " G A"; frequencies " 0.775 0.225"; depth 40 ; unknown ; non-synonymous GL193839.1 samtools variation 380046 380046 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193839.1 samtools variation 380345 380345 . . . alleles " A G"; frequencies " 0.428571428571429 0.5"; depth 14 ; unknown ; N/A GL193842.1 samtools variation 350325 350325 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL193845.1 samtools variation 53760 53760 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193845.1 samtools variation 60442 60442 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193846.1 samtools variation 119580 119580 . . . alleles " C G"; frequencies " 0.264705882352941 0.735294117647059"; depth 68 ; known ; synonymous GL193846.1 samtools variation 127464 127464 . . . alleles " C T"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; N/A GL193846.1 samtools variation 165154 165154 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 60 ; unknown ; non-synonymous GL193846.1 samtools variation 169172 169172 . . . alleles " C T"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; unknown ; synonymous GL193846.1 samtools variation 173821 173821 . . . alleles " G A"; frequencies " 0.796875 0.203125"; depth 64 ; unknown ; N/A GL193850.1 samtools variation 246713 246713 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL193850.1 samtools variation 246755 246755 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193850.1 samtools variation 253175 253175 . . . alleles " A C"; frequencies " 0.46875 0.53125"; depth 32 ; known ; N/A GL193850.1 samtools variation 255990 255990 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL193850.1 samtools variation 261472 261472 . . . alleles " T G"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL193850.1 samtools variation 262390 262390 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193850.1 samtools variation 263171 263171 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193850.1 samtools variation 264011 264011 . . . alleles " T G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193850.1 samtools variation 266899 266899 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193850.1 samtools variation 290422 290422 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193850.1 samtools variation 299196 299196 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193850.1 samtools variation 300222 300222 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL193850.1 samtools variation 332094 332094 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193850.1 samtools variation 344615 344615 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193850.1 samtools variation 351771 351771 . . . alleles " A C"; frequencies " 0.753846153846154 0.246153846153846"; depth 65 ; unknown ; N/A GL193850.1 samtools variation 352313 352313 . . . alleles " C A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193850.1 samtools variation 373479 373479 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193850.1 samtools variation 373491 373491 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193850.1 samtools variation 391931 391931 . . . alleles " C G"; frequencies " 0.279411764705882 0.720588235294118"; depth 68 ; unknown ; N/A GL193850.1 samtools variation 408558 408558 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193850.1 samtools variation 411982 411982 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193850.1 samtools variation 443827 443827 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193850.1 samtools variation 450196 450196 . . . alleles " G C"; frequencies " 0.236842105263158 0.763157894736842"; depth 38 ; known ; N/A GL193850.1 samtools variation 450442 450442 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 39 ; known ; N/A GL193850.1 samtools variation 451360 451360 . . . alleles " G A"; frequencies " 0.430555555555556 0.569444444444444"; depth 216 ; unknown ; N/A GL193850.1 samtools variation 451362 451362 . . . alleles " G A"; frequencies " 0.410377358490566 0.589622641509434"; depth 212 ; unknown ; N/A GL193850.1 samtools variation 451710 451710 . . . alleles " T A"; frequencies " 0.321428571428571 0.678571428571429"; depth 364 ; known ; N/A GL193850.1 samtools variation 451729 451729 . . . alleles " T C"; frequencies " 0.267942583732057 0.732057416267943"; depth 418 ; known ; N/A GL193850.1 samtools variation 452470 452470 . . . alleles " A G"; frequencies " 0.228260869565217 0.771739130434783"; depth 92 ; known ; N/A GL193850.1 samtools variation 452705 452705 . . . alleles " C T"; frequencies " 0.388059701492537 0.611940298507463"; depth 134 ; known ; N/A GL193850.1 samtools variation 452710 452710 . . . alleles " G A"; frequencies " 0.3828125 0.6171875"; depth 128 ; known ; N/A GL193850.1 samtools variation 452829 452829 . . . alleles " T G"; frequencies " 0.657534246575342 0.342465753424658"; depth 73 ; known ; N/A GL193855.1 samtools variation 113374 113374 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; known ; non-synonymous GL193855.1 samtools variation 118012 118012 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 78 ; known ; non-synonymous GL193855.1 samtools variation 143683 143683 . . . alleles " T C"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; non-synonymous GL193856.1 samtools variation 130277 130277 . . . alleles " A C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193859.1 samtools variation 185299 185299 . . . alleles " G A"; frequencies " 0.544303797468354 0.455696202531646"; depth 79 ; unknown ; N/A GL193859.1 samtools variation 185742 185742 . . . alleles " C G"; frequencies " 0.587786259541985 0.412213740458015"; depth 131 ; unknown ; synonymous GL193859.1 samtools variation 185999 185999 . . . alleles " G T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193859.1 samtools variation 186331 186331 . . . alleles " G A"; frequencies " 0.560810810810811 0.439189189189189"; depth 148 ; unknown ; synonymous GL193859.1 samtools variation 187077 187077 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL193859.1 samtools variation 187180 187180 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; unknown ; N/A GL193859.1 samtools variation 187256 187256 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193860.1 samtools variation 11132 11132 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL193860.1 samtools variation 53935 53935 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193860.1 samtools variation 53941 53941 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193860.1 samtools variation 61687 61687 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL193860.1 samtools variation 61798 61798 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193860.1 samtools variation 62119 62119 . . . alleles " G A"; frequencies " 0.604673807205453 0.394352482960078"; depth 1027 ; known ; non-synonymous GL193860.1 samtools variation 62279 62279 . . . alleles " G A"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; known ; N/A GL193860.1 samtools variation 63348 63348 . . . alleles " A G"; frequencies " 0.456140350877193 0.543859649122807"; depth 57 ; known ; N/A GL193860.1 samtools variation 63372 63372 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; known ; N/A GL193860.1 samtools variation 63397 63397 . . . alleles " G T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL193860.1 samtools variation 64013 64013 . . . alleles " G A"; frequencies " 0.255555555555556 0.744444444444444"; depth 180 ; known ; N/A GL193860.1 samtools variation 64450 64450 . . . alleles " G T"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; known ; N/A GL193860.1 samtools variation 64701 64701 . . . alleles " T G"; frequencies " 0.78125 0.21875"; depth 64 ; known ; N/A GL193860.1 samtools variation 64924 64924 . . . alleles " C G"; frequencies " 0.471698113207547 0.528301886792453"; depth 53 ; known ; N/A GL193860.1 samtools variation 64950 64950 . . . alleles " T G"; frequencies " 0.53125 0.46875"; depth 32 ; known ; N/A GL193860.1 samtools variation 64956 64956 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 24 ; known ; N/A GL193860.1 samtools variation 65496 65496 . . . alleles " G A"; frequencies " 0.36847242557345 0.63103953147877"; depth 2049 ; known ; non-synonymous GL193860.1 samtools variation 66667 66667 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL193860.1 samtools variation 68254 68254 . . . alleles " C G"; frequencies " 0.4149377593361 0.5850622406639"; depth 482 ; known ; N/A GL193860.1 samtools variation 68331 68331 . . . alleles " A G"; frequencies " 0.471153846153846 0.528846153846154"; depth 312 ; known ; N/A GL193860.1 samtools variation 68413 68413 . . . alleles " T C"; frequencies " 0.542772861356932 0.457227138643068"; depth 678 ; known ; N/A GL193860.1 samtools variation 69366 69366 . . . alleles " A G"; frequencies " 0.232142857142857 0.767857142857143"; depth 112 ; known ; N/A GL193860.1 samtools variation 73691 73691 . . . alleles " C T"; frequencies " 0.625207296849088 0.374792703150912"; depth 603 ; unknown ; N/A GL193860.1 samtools variation 151139 151139 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193860.1 samtools variation 173520 173520 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193860.1 samtools variation 204947 204947 . . . alleles " C T"; frequencies " 0.795348837209302 0.204651162790698"; depth 430 ; known ; non-synonymous GL193860.1 samtools variation 205112 205112 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; known ; N/A GL193860.1 samtools variation 209098 209098 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193860.1 samtools variation 210797 210797 . . . alleles " C T"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; known ; N/A GL193860.1 samtools variation 213274 213274 . . . alleles " T C"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; known ; N/A GL193860.1 samtools variation 214833 214833 . . . alleles " G A"; frequencies " 0.265544041450777 0.734455958549223"; depth 772 ; known ; N/A GL193860.1 samtools variation 262387 262387 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL193860.1 samtools variation 262434 262434 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193860.1 samtools variation 262720 262720 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193860.1 samtools variation 323234 323234 . . . alleles " G A"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; known ; N/A GL193860.1 samtools variation 323613 323613 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; N/A GL193860.1 samtools variation 330107 330107 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193860.1 samtools variation 350012 350012 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193860.1 samtools variation 379450 379450 . . . alleles " T C"; frequencies " 0.71 0.29"; depth 200 ; unknown ; synonymous GL193860.1 samtools variation 419364 419364 . . . alleles " G C"; frequencies " 0.424242424242424 0.575757575757576"; depth 66 ; unknown ; non-synonymous GL193860.1 samtools variation 438670 438670 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL193860.1 samtools variation 440357 440357 . . . alleles " C T"; frequencies " 0.768518518518518 0.231481481481481"; depth 216 ; unknown ; synonymous GL193862.1 samtools variation 1093 1093 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL193862.1 samtools variation 4107 4107 . . . alleles " C A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL193862.1 samtools variation 13321 13321 . . . alleles " G C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL193862.1 samtools variation 22667 22667 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL193862.1 samtools variation 38524 38524 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193862.1 samtools variation 48214 48214 . . . alleles " G T"; frequencies " 0.398305084745763 0.601694915254237"; depth 118 ; known ; N/A GL193862.1 samtools variation 49019 49019 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL193862.1 samtools variation 50267 50267 . . . alleles " T C"; frequencies " 0.280898876404494 0.719101123595506"; depth 89 ; known ; N/A GL193862.1 samtools variation 106980 106980 . . . alleles " C T"; frequencies " 0.32 0.68"; depth 25 ; known ; N/A GL193862.1 samtools variation 120245 120245 . . . alleles " T C"; frequencies " 0.649446494464945 0.350553505535055"; depth 271 ; unknown ; non-synonymous GL193862.1 samtools variation 120339 120339 . . . alleles " C T"; frequencies " 0.631205673758865 0.368794326241135"; depth 141 ; unknown ; synonymous GL193862.1 samtools variation 142488 142488 . . . alleles " C T"; frequencies " 0.769911504424779 0.230088495575221"; depth 113 ; unknown ; non-synonymous GL193862.1 samtools variation 279564 279564 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL193862.1 samtools variation 298992 298992 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193863.1 samtools variation 43236 43236 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193863.1 samtools variation 65678 65678 . . . alleles " A T"; frequencies " 0.735849056603774 0.264150943396226"; depth 53 ; unknown ; N/A GL193863.1 samtools variation 65959 65959 . . . alleles " G A"; frequencies " 0.720930232558139 0.27906976744186"; depth 43 ; unknown ; non-synonymous GL193863.1 samtools variation 66368 66368 . . . alleles " A G"; frequencies " 0.509433962264151 0.490566037735849"; depth 106 ; unknown ; N/A GL193863.1 samtools variation 66661 66661 . . . alleles " C G"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; unknown ; N/A GL193863.1 samtools variation 66667 66667 . . . alleles " A G"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; N/A GL193863.1 samtools variation 67049 67049 . . . alleles " C T"; frequencies " 0.745614035087719 0.254385964912281"; depth 114 ; unknown ; synonymous GL193863.1 samtools variation 67103 67103 . . . alleles " G A"; frequencies " 0.757894736842105 0.242105263157895"; depth 95 ; unknown ; synonymous GL193863.1 samtools variation 68753 68753 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193863.1 samtools variation 69062 69062 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; synonymous GL193863.1 samtools variation 69089 69089 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; synonymous GL193863.1 samtools variation 69418 69418 . . . alleles " C T"; frequencies " 0.451388888888889 0.548611111111111"; depth 144 ; unknown ; N/A GL193863.1 samtools variation 69445 69445 . . . alleles " A G"; frequencies " 0.44578313253012 0.55421686746988"; depth 166 ; unknown ; N/A GL193863.1 samtools variation 70867 70867 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL193863.1 samtools variation 71079 71079 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL193863.1 samtools variation 85542 85542 . . . alleles " C T"; frequencies " 0.71900826446281 0.28099173553719"; depth 121 ; unknown ; N/A GL193863.1 samtools variation 86161 86161 . . . alleles " G A"; frequencies " 0.606666666666667 0.393333333333333"; depth 150 ; unknown ; synonymous GL193863.1 samtools variation 90207 90207 . . . alleles " A G"; frequencies " 0.217821782178218 0.782178217821782"; depth 101 ; unknown ; synonymous GL193863.1 samtools variation 90225 90225 . . . alleles " C T"; frequencies " 0.22972972972973 0.77027027027027"; depth 74 ; unknown ; synonymous GL193863.1 samtools variation 102385 102385 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 70 ; unknown ; synonymous GL193863.1 samtools variation 115121 115121 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193863.1 samtools variation 118822 118822 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193863.1 samtools variation 119065 119065 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193863.1 samtools variation 119240 119240 . . . alleles " G T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193863.1 samtools variation 120201 120201 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193863.1 samtools variation 121315 121315 . . . alleles " A G"; frequencies " 0.767175572519084 0.232824427480916"; depth 262 ; unknown ; non-synonymous GL193863.1 samtools variation 192671 192671 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 25 ; known ; N/A GL193863.1 samtools variation 205875 205875 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL193863.1 samtools variation 225564 225564 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL193863.1 samtools variation 238321 238321 . . . alleles " C T"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; known ; N/A GL193863.1 samtools variation 238351 238351 . . . alleles " G A"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; known ; N/A GL193863.1 samtools variation 238596 238596 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193863.1 samtools variation 243622 243622 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193863.1 samtools variation 257919 257919 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; synonymous GL193863.1 samtools variation 293076 293076 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193863.1 samtools variation 343297 343297 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193863.1 samtools variation 387810 387810 . . . alleles " A G"; frequencies " 0.393939393939394 0.606060606060606"; depth 33 ; known ; N/A GL193863.1 samtools variation 399153 399153 . . . alleles " C T"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; N/A GL193863.1 samtools variation 448047 448047 . . . alleles " A G"; frequencies " 0.565616045845272 0.433810888252149"; depth 1745 ; unknown ; synonymous GL193863.1 samtools variation 449212 449212 . . . alleles " C T"; frequencies " 0.672275641025641 0.327724358974359"; depth 1248 ; unknown ; synonymous GL193864.1 samtools variation 23690 23690 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193864.1 samtools variation 32460 32460 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193864.1 samtools variation 37673 37673 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 80 ; known ; synonymous GL193864.1 samtools variation 49126 49126 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193864.1 samtools variation 59366 59366 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193864.1 samtools variation 191869 191869 . . . alleles " A G"; frequencies " 0.22972972972973 0.77027027027027"; depth 148 ; known ; N/A GL193864.1 samtools variation 191899 191899 . . . alleles " G A"; frequencies " 0.276729559748428 0.723270440251572"; depth 159 ; known ; N/A GL193864.1 samtools variation 192286 192286 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 42 ; known ; N/A GL193864.1 samtools variation 192349 192349 . . . alleles " C G"; frequencies " 0.425 0.575"; depth 80 ; known ; N/A GL193864.1 samtools variation 193077 193077 . . . alleles " G C"; frequencies " 0.33 0.67"; depth 100 ; known ; N/A GL193864.1 samtools variation 193750 193750 . . . alleles " G A"; frequencies " 0.439024390243902 0.560975609756098"; depth 41 ; known ; N/A GL193864.1 samtools variation 193923 193923 . . . alleles " A C"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; known ; N/A GL193864.1 samtools variation 194005 194005 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 25 ; known ; N/A GL193864.1 samtools variation 196297 196297 . . . alleles " C A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193864.1 samtools variation 196853 196853 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL193864.1 samtools variation 199048 199048 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL193864.1 samtools variation 199366 199366 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL193864.1 samtools variation 203309 203309 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL193864.1 samtools variation 207874 207874 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193864.1 samtools variation 207889 207889 . . . alleles " A C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193866.1 samtools variation 89530 89530 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; non-synonymous GL193866.1 samtools variation 149255 149255 . . . alleles " T C"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL193866.1 samtools variation 151099 151099 . . . alleles " G A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL193866.1 samtools variation 153335 153335 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 72 ; known ; N/A GL193867.1 samtools variation 389700 389700 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL193868.1 samtools variation 54671 54671 . . . alleles " G T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; non-synonymous GL193868.1 samtools variation 54784 54784 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; known ; non-synonymous GL193868.1 samtools variation 201811 201811 . . . alleles " G C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193868.1 samtools variation 201862 201862 . . . alleles " T G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193868.1 samtools variation 201880 201880 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193868.1 samtools variation 202088 202088 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL193868.1 samtools variation 203299 203299 . . . alleles " T A"; frequencies " 0.644736842105263 0.355263157894737"; depth 76 ; unknown ; N/A GL193868.1 samtools variation 204530 204530 . . . alleles " A G"; frequencies " 0.410958904109589 0.589041095890411"; depth 73 ; unknown ; synonymous GL193868.1 samtools variation 218191 218191 . . . alleles " T C"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL193868.1 samtools variation 234193 234193 . . . alleles " T C"; frequencies " 0.246575342465753 0.753424657534247"; depth 73 ; known ; non-synonymous GL193868.1 samtools variation 234523 234523 . . . alleles " T G"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193868.1 samtools variation 234757 234757 . . . alleles " A G"; frequencies " 0.770491803278688 0.229508196721311"; depth 61 ; unknown ; N/A GL193868.1 samtools variation 234891 234891 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL193868.1 samtools variation 237335 237335 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL193868.1 samtools variation 240089 240089 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193868.1 samtools variation 241370 241370 . . . alleles " T A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193868.1 samtools variation 241614 241614 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193868.1 samtools variation 258713 258713 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL193868.1 samtools variation 389566 389566 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193868.1 samtools variation 438338 438338 . . . alleles " C T"; frequencies " 0.707317073170732 0.292682926829268"; depth 82 ; unknown ; synonymous GL193873.1 samtools variation 146991 146991 . . . alleles " C T"; frequencies " 0.43859649122807 0.56140350877193"; depth 57 ; unknown ; N/A GL193873.1 samtools variation 147690 147690 . . . alleles " G A"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL193873.1 samtools variation 147893 147893 . . . alleles " C G"; frequencies " 0.444444444444444 0.555555555555556"; depth 54 ; unknown ; N/A GL193873.1 samtools variation 195675 195675 . . . alleles " T G"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL193873.1 samtools variation 196218 196218 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL193873.1 samtools variation 197995 197995 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 63 ; unknown ; N/A GL193873.1 samtools variation 200088 200088 . . . alleles " G A"; frequencies " 0.662745098039216 0.337254901960784"; depth 255 ; unknown ; synonymous GL193873.1 samtools variation 201308 201308 . . . alleles " T C"; frequencies " 0.608 0.392"; depth 125 ; unknown ; non-synonymous GL193873.1 samtools variation 201374 201374 . . . alleles " G C"; frequencies " 0.609756097560976 0.390243902439024"; depth 41 ; unknown ; N/A GL193873.1 samtools variation 280406 280406 . . . alleles " C T"; frequencies " 0.495412844036697 0.504587155963303"; depth 109 ; unknown ; N/A GL193873.1 samtools variation 283176 283176 . . . alleles " A C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193873.1 samtools variation 362885 362885 . . . alleles " G A"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL193873.1 samtools variation 362886 362886 . . . alleles " C A"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL193873.1 samtools variation 435728 435728 . . . alleles " C T"; frequencies " 0.779661016949153 0.220338983050847"; depth 59 ; unknown ; N/A GL193873.1 samtools variation 438747 438747 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL193873.1 samtools variation 441675 441675 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; known ; N/A GL193873.1 samtools variation 441957 441957 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193873.1 samtools variation 443154 443154 . . . alleles " C T"; frequencies " 0.529131985731272 0.470868014268728"; depth 2523 ; unknown ; N/A GL193873.1 samtools variation 444876 444876 . . . alleles " G C"; frequencies " 0.526011560693642 0.473988439306358"; depth 173 ; known ; N/A GL193874.1 samtools variation 51793 51793 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193874.1 samtools variation 60488 60488 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193874.1 samtools variation 60539 60539 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL193874.1 samtools variation 64609 64609 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL193874.1 samtools variation 65721 65721 . . . alleles " A T"; frequencies " 0.693069306930693 0.306930693069307"; depth 101 ; unknown ; N/A GL193874.1 samtools variation 66008 66008 . . . alleles " T C"; frequencies " 0.741176470588235 0.258823529411765"; depth 85 ; unknown ; N/A GL193874.1 samtools variation 67133 67133 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 90 ; unknown ; N/A GL193874.1 samtools variation 67286 67286 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 80 ; unknown ; N/A GL193874.1 samtools variation 67474 67474 . . . alleles " G A"; frequencies " 0.657142857142857 0.342857142857143"; depth 70 ; unknown ; N/A GL193874.1 samtools variation 105355 105355 . . . alleles " C T"; frequencies " 0.76 0.24"; depth 25 ; unknown ; synonymous GL193874.1 samtools variation 111315 111315 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193874.1 samtools variation 111556 111556 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 65 ; unknown ; synonymous GL193874.1 samtools variation 111655 111655 . . . alleles " C T"; frequencies " 0.759493670886076 0.240506329113924"; depth 79 ; unknown ; synonymous GL193874.1 samtools variation 115363 115363 . . . alleles " C T"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL193874.1 samtools variation 117861 117861 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; synonymous GL193874.1 samtools variation 137410 137410 . . . alleles " A G"; frequencies " 0.773770491803279 0.226229508196721"; depth 305 ; unknown ; N/A GL193874.1 samtools variation 137506 137506 . . . alleles " A C"; frequencies " 0.777142857142857 0.22"; depth 350 ; unknown ; N/A GL193874.1 samtools variation 137707 137707 . . . alleles " C T"; frequencies " 0.729824561403509 0.270175438596491"; depth 285 ; unknown ; N/A GL193874.1 samtools variation 138049 138049 . . . alleles " T C"; frequencies " 0.688995215311005 0.311004784688995"; depth 209 ; unknown ; N/A GL193874.1 samtools variation 138389 138389 . . . alleles " C T"; frequencies " 0.501650165016502 0.498349834983498"; depth 303 ; unknown ; synonymous GL193874.1 samtools variation 138458 138458 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 110 ; unknown ; synonymous GL193874.1 samtools variation 160794 160794 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL193874.1 samtools variation 163138 163138 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193874.1 samtools variation 163165 163165 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193874.1 samtools variation 164929 164929 . . . alleles " G T"; frequencies " 0.786885245901639 0.213114754098361"; depth 61 ; unknown ; N/A GL193874.1 samtools variation 164981 164981 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; unknown ; N/A GL193874.1 samtools variation 165124 165124 . . . alleles " T C"; frequencies " 0.488372093023256 0.511627906976744"; depth 86 ; unknown ; N/A GL193874.1 samtools variation 165309 165309 . . . alleles " C T"; frequencies " 0.796657381615599 0.203342618384401"; depth 359 ; unknown ; N/A GL193874.1 samtools variation 165987 165987 . . . alleles " C T"; frequencies " 0.777173913043478 0.222826086956522"; depth 184 ; unknown ; N/A GL193874.1 samtools variation 166122 166122 . . . alleles " T C"; frequencies " 0.771186440677966 0.228813559322034"; depth 118 ; unknown ; N/A GL193874.1 samtools variation 166222 166222 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 92 ; unknown ; N/A GL193874.1 samtools variation 180949 180949 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL193874.1 samtools variation 181087 181087 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL193874.1 samtools variation 199042 199042 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL193874.1 samtools variation 201625 201625 . . . alleles " A T"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL193874.1 samtools variation 202308 202308 . . . alleles " C T"; frequencies " 0.689189189189189 0.310810810810811"; depth 74 ; unknown ; N/A GL193874.1 samtools variation 202310 202310 . . . alleles " T C"; frequencies " 0.694444444444444 0.305555555555556"; depth 72 ; unknown ; N/A GL193874.1 samtools variation 202694 202694 . . . alleles " G A"; frequencies " 0.351851851851852 0.648148148148148"; depth 54 ; unknown ; N/A GL193874.1 samtools variation 202879 202879 . . . alleles " G A"; frequencies " 0.712727272727273 0.287272727272727"; depth 275 ; unknown ; N/A GL193874.1 samtools variation 204498 204498 . . . alleles " T C"; frequencies " 0.407407407407407 0.592592592592593"; depth 54 ; unknown ; N/A GL193874.1 samtools variation 204727 204727 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL193874.1 samtools variation 204754 204754 . . . alleles " T G"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL193874.1 samtools variation 205099 205099 . . . alleles " G A"; frequencies " 0.530612244897959 0.469387755102041"; depth 49 ; unknown ; N/A GL193874.1 samtools variation 205952 205952 . . . alleles " A C"; frequencies " 0.8 0.2"; depth 55 ; unknown ; N/A GL193874.1 samtools variation 205996 205996 . . . alleles " T C"; frequencies " 0.673469387755102 0.326530612244898"; depth 49 ; unknown ; N/A GL193874.1 samtools variation 206292 206292 . . . alleles " C A"; frequencies " 0.552238805970149 0.447761194029851"; depth 67 ; unknown ; N/A GL193874.1 samtools variation 206298 206298 . . . alleles " C G"; frequencies " 0.253968253968254 0.746031746031746"; depth 63 ; unknown ; N/A GL193874.1 samtools variation 207335 207335 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193874.1 samtools variation 207418 207418 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193874.1 samtools variation 208110 208110 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193874.1 samtools variation 224725 224725 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; synonymous GL193874.1 samtools variation 224980 224980 . . . alleles " G T"; frequencies " 0.25 0.75"; depth 16 ; unknown ; synonymous GL193874.1 samtools variation 228335 228335 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL193874.1 samtools variation 232167 232167 . . . alleles " G A"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL193874.1 samtools variation 234284 234284 . . . alleles " G C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193874.1 samtools variation 246915 246915 . . . alleles " C T"; frequencies " 0.457142857142857 0.542857142857143"; depth 140 ; unknown ; N/A GL193874.1 samtools variation 249748 249748 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193874.1 samtools variation 251043 251043 . . . alleles " G C"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; unknown ; N/A GL193874.1 samtools variation 252553 252553 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 117 ; unknown ; synonymous GL193874.1 samtools variation 257980 257980 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; unknown ; N/A GL193874.1 samtools variation 258025 258025 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL193874.1 samtools variation 259604 259604 . . . alleles " A C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193874.1 samtools variation 264408 264408 . . . alleles " G A"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL193874.1 samtools variation 279185 279185 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193874.1 samtools variation 282874 282874 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193874.1 samtools variation 282886 282886 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193874.1 samtools variation 283268 283268 . . . alleles " C T"; frequencies " 0.704081632653061 0.295918367346939"; depth 98 ; unknown ; synonymous GL193874.1 samtools variation 283313 283313 . . . alleles " G T"; frequencies " 0.311111111111111 0.688888888888889"; depth 45 ; unknown ; synonymous GL193874.1 samtools variation 318786 318786 . . . alleles " T G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; non-synonymous GL193874.1 samtools variation 319269 319269 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193874.1 samtools variation 319895 319895 . . . alleles " C T"; frequencies " 0.480891719745223 0.519108280254777"; depth 314 ; unknown ; synonymous GL193874.1 samtools variation 319964 319964 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 55 ; unknown ; synonymous GL193874.1 samtools variation 325213 325213 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 32 ; unknown ; synonymous GL193874.1 samtools variation 339696 339696 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 49 ; unknown ; synonymous GL193874.1 samtools variation 343334 343334 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; synonymous GL193877.1 samtools variation 63851 63851 . . . alleles " C T"; frequencies " 0.737373737373737 0.262626262626263"; depth 99 ; known ; N/A GL193877.1 samtools variation 63868 63868 . . . alleles " A T"; frequencies " 0.302083333333333 0.697916666666667"; depth 96 ; unknown ; N/A GL193877.1 samtools variation 63986 63986 . . . alleles " A G"; frequencies " 0.573122529644269 0.426877470355731"; depth 253 ; known ; N/A GL193877.1 samtools variation 64961 64961 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193877.1 samtools variation 70073 70073 . . . alleles " G A"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; unknown ; synonymous GL193880.1 samtools variation 11814 11814 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193880.1 samtools variation 18112 18112 . . . alleles " T A"; frequencies " 0.739130434782609 0.260869565217391"; depth 46 ; unknown ; N/A GL193880.1 samtools variation 19686 19686 . . . alleles " C G"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; unknown ; N/A GL193880.1 samtools variation 21400 21400 . . . alleles " A C"; frequencies " 0.697674418604651 0.302325581395349"; depth 43 ; unknown ; N/A GL193880.1 samtools variation 21603 21603 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193880.1 samtools variation 21657 21657 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193880.1 samtools variation 22259 22259 . . . alleles " G A"; frequencies " 0.486486486486487 0.513513513513513"; depth 37 ; unknown ; N/A GL193880.1 samtools variation 23062 23062 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193880.1 samtools variation 31053 31053 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193880.1 samtools variation 31214 31214 . . . alleles " A C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL193880.1 samtools variation 33042 33042 . . . alleles " G T"; frequencies " 0.714893617021277 0.285106382978723"; depth 235 ; unknown ; N/A GL193880.1 samtools variation 33253 33253 . . . alleles " T C"; frequencies " 0.689473684210526 0.310526315789474"; depth 190 ; unknown ; N/A GL193880.1 samtools variation 33709 33709 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193880.1 samtools variation 33940 33940 . . . alleles " T C"; frequencies " 0.659259259259259 0.340740740740741"; depth 135 ; unknown ; N/A GL193880.1 samtools variation 34456 34456 . . . alleles " C G"; frequencies " 0.736842105263158 0.263157894736842"; depth 76 ; unknown ; N/A GL193880.1 samtools variation 34521 34521 . . . alleles " A G"; frequencies " 0.688311688311688 0.311688311688312"; depth 77 ; unknown ; N/A GL193880.1 samtools variation 35551 35551 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL193880.1 samtools variation 35748 35748 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 52 ; unknown ; N/A GL193880.1 samtools variation 36028 36028 . . . alleles " G T"; frequencies " 0.744186046511628 0.255813953488372"; depth 43 ; unknown ; N/A GL193880.1 samtools variation 36056 36056 . . . alleles " A G"; frequencies " 0.693877551020408 0.306122448979592"; depth 49 ; unknown ; N/A GL193880.1 samtools variation 36934 36934 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193880.1 samtools variation 40495 40495 . . . alleles " C T"; frequencies " 0.661417322834646 0.338582677165354"; depth 127 ; unknown ; synonymous GL193880.1 samtools variation 44064 44064 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; non-synonymous GL193880.1 samtools variation 44185 44185 . . . alleles " G A"; frequencies " 0.558139534883721 0.441860465116279"; depth 43 ; unknown ; synonymous GL193880.1 samtools variation 47096 47096 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 36 ; unknown ; synonymous GL193880.1 samtools variation 50873 50873 . . . alleles " C T"; frequencies " 0.672727272727273 0.327272727272727"; depth 55 ; unknown ; N/A GL193880.1 samtools variation 50893 50893 . . . alleles " T C"; frequencies " 0.679245283018868 0.320754716981132"; depth 53 ; unknown ; N/A GL193880.1 samtools variation 51188 51188 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL193880.1 samtools variation 51246 51246 . . . alleles " A T"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL193880.1 samtools variation 52331 52331 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 30 ; unknown ; N/A GL193882.1 samtools variation 790 790 . . . alleles " A G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL193883.1 samtools variation 332955 332955 . . . alleles " C T"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; synonymous GL193883.1 samtools variation 338790 338790 . . . alleles " G A"; frequencies " 0.595238095238095 0.404761904761905"; depth 42 ; unknown ; non-synonymous GL193883.1 samtools variation 351283 351283 . . . alleles " T C"; frequencies " 0.686274509803922 0.313725490196078"; depth 51 ; unknown ; synonymous GL193883.1 samtools variation 391350 391350 . . . alleles " A T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL193884.1 samtools variation 111106 111106 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL193885.1 samtools variation 50627 50627 . . . alleles " A C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193887.1 samtools variation 77727 77727 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193887.1 samtools variation 82926 82926 . . . alleles " C T"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL193887.1 samtools variation 83007 83007 . . . alleles " A T"; frequencies " 0.382352941176471 0.617647058823529"; depth 34 ; unknown ; N/A GL193887.1 samtools variation 90034 90034 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193887.1 samtools variation 90035 90035 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193887.1 samtools variation 90844 90844 . . . alleles " T G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193887.1 samtools variation 90846 90846 . . . alleles " C T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193887.1 samtools variation 91736 91736 . . . alleles " G A"; frequencies " 0.452380952380952 0.547619047619048"; depth 42 ; unknown ; N/A GL193887.1 samtools variation 92165 92165 . . . alleles " T C"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL193887.1 samtools variation 101669 101669 . . . alleles " A G"; frequencies " 0.215384615384615 0.784615384615385"; depth 65 ; known ; N/A GL193887.1 samtools variation 101681 101681 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 60 ; unknown ; N/A GL193887.1 samtools variation 101739 101739 . . . alleles " T C"; frequencies " 0.227272727272727 0.772727272727273"; depth 88 ; unknown ; N/A GL193887.1 samtools variation 108425 108425 . . . alleles " C A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193888.1 samtools variation 249125 249125 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; known ; N/A GL193888.1 samtools variation 265993 265993 . . . alleles " G C"; frequencies " 0.769230769230769 0.230769230769231"; depth 351 ; unknown ; N/A GL193888.1 samtools variation 266417 266417 . . . alleles " A G"; frequencies " 0.757142857142857 0.242857142857143"; depth 70 ; unknown ; N/A GL193890.1 samtools variation 163816 163816 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193891.1 samtools variation 157956 157956 . . . alleles " T C"; frequencies " 0.744186046511628 0.255813953488372"; depth 43 ; unknown ; synonymous GL193893.1 samtools variation 131786 131786 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL193893.1 samtools variation 136176 136176 . . . alleles " A G"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; known ; N/A GL193893.1 samtools variation 139828 139828 . . . alleles " T C"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; known ; N/A GL193893.1 samtools variation 140018 140018 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 40 ; known ; N/A GL193893.1 samtools variation 142853 142853 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193893.1 samtools variation 160559 160559 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193893.1 samtools variation 227583 227583 . . . alleles " G C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL193893.1 samtools variation 229308 229308 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193893.1 samtools variation 229310 229310 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL193893.1 samtools variation 242028 242028 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL193893.1 samtools variation 242169 242169 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 42 ; unknown ; N/A GL193893.1 samtools variation 246094 246094 . . . alleles " C T"; frequencies " 0.219512195121951 0.780487804878049"; depth 123 ; unknown ; N/A GL193893.1 samtools variation 306016 306016 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; synonymous GL193895.1 samtools variation 330879 330879 . . . alleles " G C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193895.1 samtools variation 330930 330930 . . . alleles " A C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; non-synonymous GL193897.1 samtools variation 79944 79944 . . . alleles " G T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193897.1 samtools variation 79984 79984 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193897.1 samtools variation 81655 81655 . . . alleles " C T"; frequencies " 0.717948717948718 0.282051282051282"; depth 39 ; unknown ; N/A GL193897.1 samtools variation 81677 81677 . . . alleles " C T"; frequencies " 0.564102564102564 0.435897435897436"; depth 39 ; unknown ; N/A GL193897.1 samtools variation 83503 83503 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 56 ; unknown ; N/A GL193897.1 samtools variation 83613 83613 . . . alleles " G C"; frequencies " 0.760869565217391 0.239130434782609"; depth 46 ; unknown ; N/A GL193897.1 samtools variation 84715 84715 . . . alleles " G C"; frequencies " 0.484848484848485 0.515151515151515"; depth 66 ; unknown ; N/A GL193897.1 samtools variation 127479 127479 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193897.1 samtools variation 129117 129117 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL193897.1 samtools variation 130112 130112 . . . alleles " C T"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL193897.1 samtools variation 130486 130486 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193897.1 samtools variation 131333 131333 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193897.1 samtools variation 133761 133761 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193897.1 samtools variation 138100 138100 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL193897.1 samtools variation 138635 138635 . . . alleles " T C"; frequencies " 0.608695652173913 0.391304347826087"; depth 46 ; unknown ; N/A GL193897.1 samtools variation 157002 157002 . . . alleles " T C"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL193899.1 samtools variation 108081 108081 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 20 ; unknown ; non-synonymous GL193899.1 samtools variation 113724 113724 . . . alleles " T C"; frequencies " 0.37037037037037 0.62962962962963"; depth 54 ; unknown ; N/A GL193899.1 samtools variation 113816 113816 . . . alleles " T C"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; N/A GL193899.1 samtools variation 114133 114133 . . . alleles " A G"; frequencies " 0.639344262295082 0.360655737704918"; depth 61 ; unknown ; N/A GL193899.1 samtools variation 114954 114954 . . . alleles " G A"; frequencies " 0.77319587628866 0.22680412371134"; depth 194 ; unknown ; N/A GL193899.1 samtools variation 116317 116317 . . . alleles " C G"; frequencies " 0.794117647058823 0.205882352941176"; depth 102 ; unknown ; non-synonymous GL193899.1 samtools variation 117316 117316 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193899.1 samtools variation 117962 117962 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL193899.1 samtools variation 127268 127268 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; synonymous GL193899.1 samtools variation 129560 129560 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL193899.1 samtools variation 129999 129999 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL193899.1 samtools variation 130027 130027 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193899.1 samtools variation 130628 130628 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193899.1 samtools variation 132388 132388 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 42 ; unknown ; N/A GL193899.1 samtools variation 132682 132682 . . . alleles " A T"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; non-synonymous GL193899.1 samtools variation 133036 133036 . . . alleles " G A"; frequencies " 0.697674418604651 0.302325581395349"; depth 86 ; unknown ; non-synonymous GL193899.1 samtools variation 142819 142819 . . . alleles " C T"; frequencies " 0.746835443037975 0.253164556962025"; depth 79 ; unknown ; N/A GL193899.1 samtools variation 142875 142875 . . . alleles " A G"; frequencies " 0.745762711864407 0.254237288135593"; depth 59 ; unknown ; N/A GL193899.1 samtools variation 145078 145078 . . . alleles " A G"; frequencies " 0.350746268656716 0.649253731343284"; depth 134 ; unknown ; synonymous GL193899.1 samtools variation 177203 177203 . . . alleles " A G"; frequencies " 0.716216216216216 0.283783783783784"; depth 74 ; known ; N/A GL193899.1 samtools variation 180710 180710 . . . alleles " G A"; frequencies " 0.732899022801303 0.267100977198697"; depth 307 ; unknown ; synonymous GL193899.1 samtools variation 180767 180767 . . . alleles " A G"; frequencies " 0.738148984198646 0.261851015801354"; depth 443 ; unknown ; synonymous GL193899.1 samtools variation 180815 180815 . . . alleles " G C"; frequencies " 0.697014925373134 0.3"; depth 670 ; unknown ; synonymous GL193899.1 samtools variation 180944 180944 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193899.1 samtools variation 180977 180977 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193899.1 samtools variation 182321 182321 . . . alleles " T C"; frequencies " 0.668789808917197 0.331210191082803"; depth 471 ; unknown ; synonymous GL193899.1 samtools variation 182393 182393 . . . alleles " C T"; frequencies " 0.681887366818874 0.318112633181126"; depth 657 ; unknown ; synonymous GL193899.1 samtools variation 182955 182955 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193899.1 samtools variation 182977 182977 . . . alleles " A T"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL193899.1 samtools variation 183123 183123 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL193899.1 samtools variation 183186 183186 . . . alleles " C T"; frequencies " 0.669371196754564 0.330628803245436"; depth 493 ; unknown ; non-synonymous GL193899.1 samtools variation 184872 184872 . . . alleles " C T"; frequencies " 0.690423162583519 0.309576837416481"; depth 898 ; unknown ; non-synonymous GL193899.1 samtools variation 184925 184925 . . . alleles " A G"; frequencies " 0.704464285714286 0.295535714285714"; depth 1120 ; unknown ; non-synonymous GL193899.1 samtools variation 187114 187114 . . . alleles " C T"; frequencies " 0.347277032359905 0.652722967640095"; depth 1267 ; known ; non-synonymous GL193899.1 samtools variation 190278 190278 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL193899.1 samtools variation 191328 191328 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; known ; N/A GL193899.1 samtools variation 224228 224228 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL193899.1 samtools variation 238521 238521 . . . alleles " T C"; frequencies " 0.641361256544503 0.358638743455497"; depth 382 ; known ; non-synonymous GL193899.1 samtools variation 239661 239661 . . . alleles " T C"; frequencies " 0.517333333333333 0.482666666666667"; depth 375 ; known ; synonymous GL193899.1 samtools variation 320734 320734 . . . alleles " C T"; frequencies " 0.730994152046784 0.269005847953216"; depth 171 ; unknown ; synonymous GL193899.1 samtools variation 324721 324721 . . . alleles " C T"; frequencies " 0.785529715762274 0.211886304909561"; depth 387 ; unknown ; synonymous GL193899.1 samtools variation 331365 331365 . . . alleles " C G"; frequencies " 0.314893617021277 0.685106382978723"; depth 235 ; unknown ; N/A GL193899.1 samtools variation 332424 332424 . . . alleles " G A"; frequencies " 0.670886075949367 0.329113924050633"; depth 79 ; unknown ; N/A GL193899.1 samtools variation 336478 336478 . . . alleles " T G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193899.1 samtools variation 338691 338691 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193900.1 samtools variation 260464 260464 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL193900.1 samtools variation 308344 308344 . . . alleles " A G"; frequencies " 0.24 0.76"; depth 100 ; known ; synonymous GL193900.1 samtools variation 309643 309643 . . . alleles " G T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193900.1 samtools variation 309715 309715 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL193900.1 samtools variation 311054 311054 . . . alleles " T G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL193900.1 samtools variation 318917 318917 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193900.1 samtools variation 407888 407888 . . . alleles " G C"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; N/A GL193900.1 samtools variation 408941 408941 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; known ; N/A GL193900.1 samtools variation 409063 409063 . . . alleles " G A"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; known ; N/A GL193900.1 samtools variation 409088 409088 . . . alleles " G C"; frequencies " 0.65 0.35"; depth 40 ; known ; N/A GL193900.1 samtools variation 409437 409437 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193900.1 samtools variation 409613 409613 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL193900.1 samtools variation 409614 409614 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193900.1 samtools variation 410305 410305 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193900.1 samtools variation 410371 410371 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL193900.1 samtools variation 411029 411029 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL193900.1 samtools variation 411211 411211 . . . alleles " G A"; frequencies " 0.327586206896552 0.672413793103448"; depth 58 ; known ; N/A GL193900.1 samtools variation 411317 411317 . . . alleles " C T"; frequencies " 0.773584905660377 0.226415094339623"; depth 53 ; known ; N/A GL193900.1 samtools variation 411599 411599 . . . alleles " G A"; frequencies " 0.349514563106796 0.650485436893204"; depth 103 ; known ; N/A GL193900.1 samtools variation 411750 411750 . . . alleles " G T"; frequencies " 0.416666666666667 0.583333333333333"; depth 36 ; known ; non-synonymous GL193902.1 samtools variation 4923 4923 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193902.1 samtools variation 10050 10050 . . . alleles " T G"; frequencies " 0.774193548387097 0.225806451612903"; depth 62 ; unknown ; N/A GL193902.1 samtools variation 17734 17734 . . . alleles " A G"; frequencies " 0.757142857142857 0.242857142857143"; depth 70 ; unknown ; synonymous GL193902.1 samtools variation 30311 30311 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; non-synonymous GL193902.1 samtools variation 99636 99636 . . . alleles " T C"; frequencies " 0.61231884057971 0.38768115942029"; depth 276 ; unknown ; N/A GL193902.1 samtools variation 107241 107241 . . . alleles " C A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL193902.1 samtools variation 109094 109094 . . . alleles " G T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193902.1 samtools variation 126263 126263 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; known ; N/A GL193902.1 samtools variation 133961 133961 . . . alleles " A G"; frequencies " 0.242424242424242 0.757575757575758"; depth 33 ; known ; N/A GL193902.1 samtools variation 221641 221641 . . . alleles " G T"; frequencies " 0.222222222222222 0.777777777777778"; depth 36 ; unknown ; N/A GL193902.1 samtools variation 221806 221806 . . . alleles " C G"; frequencies " 0.719298245614035 0.280701754385965"; depth 57 ; unknown ; non-synonymous GL193902.1 samtools variation 231789 231789 . . . alleles " A G"; frequencies " 0.741463414634146 0.258536585365854"; depth 205 ; unknown ; synonymous GL193902.1 samtools variation 254294 254294 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 45 ; unknown ; synonymous GL193902.1 samtools variation 321842 321842 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193902.1 samtools variation 327115 327115 . . . alleles " C T"; frequencies " 0.774647887323944 0.225352112676056"; depth 71 ; known ; N/A GL193903.1 samtools variation 269 269 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; synonymous GL193903.1 samtools variation 8613 8613 . . . alleles " G A"; frequencies " 0.741935483870968 0.258064516129032"; depth 62 ; known ; synonymous GL193903.1 samtools variation 32220 32220 . . . alleles " C A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL193903.1 samtools variation 47033 47033 . . . alleles " C T"; frequencies " 0.516129032258065 0.483870967741935"; depth 31 ; unknown ; synonymous GL193903.1 samtools variation 51347 51347 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193903.1 samtools variation 51401 51401 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193903.1 samtools variation 114974 114974 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; synonymous GL193907.1 samtools variation 92323 92323 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL193907.1 samtools variation 92456 92456 . . . alleles " C T"; frequencies " 0.490384615384615 0.509615384615385"; depth 104 ; unknown ; N/A GL193907.1 samtools variation 92926 92926 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL193907.1 samtools variation 93338 93338 . . . alleles " T A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; known ; N/A GL193907.1 samtools variation 93380 93380 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193907.1 samtools variation 93498 93498 . . . alleles " T C"; frequencies " 0.388235294117647 0.611764705882353"; depth 85 ; known ; N/A GL193909.1 samtools variation 27525 27525 . . . alleles " G C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL193909.1 samtools variation 325200 325200 . . . alleles " C T"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL193909.1 samtools variation 327446 327446 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193909.1 samtools variation 394872 394872 . . . alleles " C T"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL193909.1 samtools variation 412041 412041 . . . alleles " G A"; frequencies " 0.73224043715847 0.26775956284153"; depth 183 ; unknown ; N/A GL193910.1 samtools variation 68041 68041 . . . alleles " G A"; frequencies " 0.773109243697479 0.226890756302521"; depth 119 ; known ; N/A GL193910.1 samtools variation 68198 68198 . . . alleles " T C"; frequencies " 0.542372881355932 0.457627118644068"; depth 118 ; unknown ; N/A GL193910.1 samtools variation 108164 108164 . . . alleles " C T"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; known ; N/A GL193910.1 samtools variation 111858 111858 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193910.1 samtools variation 112406 112406 . . . alleles " C T"; frequencies " 0.65933014354067 0.34066985645933"; depth 1045 ; unknown ; non-synonymous GL193910.1 samtools variation 115155 115155 . . . alleles " A C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL193910.1 samtools variation 118769 118769 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL193910.1 samtools variation 132928 132928 . . . alleles " G A"; frequencies " 0.641148325358852 0.358851674641148"; depth 418 ; unknown ; synonymous GL193912.1 samtools variation 78801 78801 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193912.1 samtools variation 182241 182241 . . . alleles " T C"; frequencies " 0.351351351351351 0.648648648648649"; depth 37 ; known ; synonymous GL193912.1 samtools variation 185588 185588 . . . alleles " T A"; frequencies " 0.416666666666667 0.583333333333333"; depth 60 ; known ; synonymous GL193912.1 samtools variation 191173 191173 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193912.1 samtools variation 198739 198739 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; known ; N/A GL193912.1 samtools variation 202003 202003 . . . alleles " C T"; frequencies " 0.543478260869565 0.456521739130435"; depth 92 ; known ; N/A GL193912.1 samtools variation 202318 202318 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 80 ; known ; N/A GL193912.1 samtools variation 202939 202939 . . . alleles " T G"; frequencies " 0.488888888888889 0.511111111111111"; depth 90 ; known ; N/A GL193912.1 samtools variation 202942 202942 . . . alleles " T G"; frequencies " 0.782608695652174 0.217391304347826"; depth 92 ; unknown ; N/A GL193912.1 samtools variation 203006 203006 . . . alleles " G C"; frequencies " 0.542168674698795 0.457831325301205"; depth 83 ; known ; N/A GL193912.1 samtools variation 203204 203204 . . . alleles " C T"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; known ; N/A GL193912.1 samtools variation 203782 203782 . . . alleles " T C"; frequencies " 0.486111111111111 0.513888888888889"; depth 144 ; known ; N/A GL193912.1 samtools variation 203804 203804 . . . alleles " C A"; frequencies " 0.458715596330275 0.541284403669725"; depth 109 ; known ; N/A GL193912.1 samtools variation 204100 204100 . . . alleles " G A"; frequencies " 0.565789473684211 0.434210526315789"; depth 76 ; known ; N/A GL193912.1 samtools variation 211617 211617 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193912.1 samtools variation 399634 399634 . . . alleles " G A"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL193914.1 samtools variation 30143 30143 . . . alleles " A C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL193914.1 samtools variation 30287 30287 . . . alleles " G T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193914.1 samtools variation 32525 32525 . . . alleles " C G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; non-synonymous GL193914.1 samtools variation 58561 58561 . . . alleles " T G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; synonymous GL193914.1 samtools variation 230296 230296 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 25 ; known ; N/A GL193915.1 samtools variation 429802 429802 . . . alleles " C T"; frequencies " 0.764044943820225 0.235955056179775"; depth 89 ; unknown ; N/A GL193915.1 samtools variation 429821 429821 . . . alleles " A G"; frequencies " 0.730337078651685 0.269662921348315"; depth 89 ; unknown ; N/A GL193917.1 samtools variation 542 542 . . . alleles " G C"; frequencies " 0.743589743589744 0.205128205128205"; depth 39 ; unknown ; non-synonymous GL193917.1 samtools variation 578 578 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; synonymous GL193917.1 samtools variation 2277 2277 . . . alleles " C A"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; non-synonymous GL193917.1 samtools variation 307905 307905 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193917.1 samtools variation 307906 307906 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193917.1 samtools variation 311270 311270 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193920.1 samtools variation 46314 46314 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193920.1 samtools variation 55011 55011 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193920.1 samtools variation 138203 138203 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL193920.1 samtools variation 229087 229087 . . . alleles " C T"; frequencies " 0.490196078431373 0.509803921568627"; depth 51 ; unknown ; N/A GL193920.1 samtools variation 230248 230248 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 48 ; known ; N/A GL193920.1 samtools variation 232239 232239 . . . alleles " A G"; frequencies " 0.292682926829268 0.707317073170732"; depth 41 ; known ; N/A GL193920.1 samtools variation 234381 234381 . . . alleles " T C"; frequencies " 0.57843137254902 0.42156862745098"; depth 102 ; known ; N/A GL193920.1 samtools variation 266437 266437 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL193920.1 samtools variation 268649 268649 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 117 ; unknown ; N/A GL193920.1 samtools variation 277938 277938 . . . alleles " C T"; frequencies " 0.239583333333333 0.760416666666667"; depth 384 ; known ; synonymous GL193920.1 samtools variation 280116 280116 . . . alleles " G A"; frequencies " 0.792701863354037 0.206521739130435"; depth 1288 ; unknown ; N/A GL193920.1 samtools variation 283083 283083 . . . alleles " G C"; frequencies " 0.389221556886228 0.610778443113772"; depth 167 ; known ; N/A GL193920.1 samtools variation 284592 284592 . . . alleles " C A"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; N/A GL193920.1 samtools variation 285368 285368 . . . alleles " T C"; frequencies " 0.581699346405229 0.418300653594771"; depth 153 ; known ; N/A GL193920.1 samtools variation 301016 301016 . . . alleles " C G"; frequencies " 0.76271186440678 0.23728813559322"; depth 236 ; unknown ; N/A GL193920.1 samtools variation 321413 321413 . . . alleles " G A"; frequencies " 0.346153846153846 0.653846153846154"; depth 156 ; known ; synonymous GL193920.1 samtools variation 321784 321784 . . . alleles " A G"; frequencies " 0.299065420560748 0.700934579439252"; depth 107 ; unknown ; non-synonymous GL193920.1 samtools variation 321786 321786 . . . alleles " A G"; frequencies " 0.299065420560748 0.700934579439252"; depth 107 ; unknown ; synonymous GL193920.1 samtools variation 322381 322381 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 153 ; known ; synonymous GL193920.1 samtools variation 323413 323413 . . . alleles " G A"; frequencies " 0.784037558685446 0.215962441314554"; depth 213 ; unknown ; N/A GL193920.1 samtools variation 379981 379981 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 171 ; known ; synonymous GL193920.1 samtools variation 382480 382480 . . . alleles " A G"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; N/A GL193920.1 samtools variation 384093 384093 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193920.1 samtools variation 394393 394393 . . . alleles " A G"; frequencies " 0.433962264150943 0.566037735849057"; depth 53 ; known ; N/A GL193920.1 samtools variation 399606 399606 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL193920.1 samtools variation 399610 399610 . . . alleles " G A"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL193920.1 samtools variation 399688 399688 . . . alleles " G C"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; known ; N/A GL193920.1 samtools variation 400416 400416 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL193920.1 samtools variation 401712 401712 . . . alleles " A G"; frequencies " 0.64026402640264 0.35973597359736"; depth 303 ; known ; synonymous GL193921.1 samtools variation 297513 297513 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; synonymous GL193921.1 samtools variation 304810 304810 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL193921.1 samtools variation 340073 340073 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; synonymous GL193921.1 samtools variation 376880 376880 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL193921.1 samtools variation 378172 378172 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193921.1 samtools variation 379141 379141 . . . alleles " T C"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; known ; N/A GL193922.1 samtools variation 109587 109587 . . . alleles " C T"; frequencies " 0.583732057416268 0.416267942583732"; depth 209 ; unknown ; non-synonymous GL193925.1 samtools variation 238014 238014 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193925.1 samtools variation 239851 239851 . . . alleles " A G"; frequencies " 0.551724137931034 0.448275862068966"; depth 87 ; unknown ; N/A GL193925.1 samtools variation 243929 243929 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193925.1 samtools variation 244830 244830 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL193925.1 samtools variation 244847 244847 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL193925.1 samtools variation 247462 247462 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 52 ; unknown ; synonymous GL193925.1 samtools variation 249507 249507 . . . alleles " G A"; frequencies " 0.779761904761905 0.220238095238095"; depth 168 ; unknown ; synonymous GL193925.1 samtools variation 257560 257560 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL193925.1 samtools variation 351697 351697 . . . alleles " T C"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL193925.1 samtools variation 373727 373727 . . . alleles " G A"; frequencies " 0.527272727272727 0.472727272727273"; depth 55 ; unknown ; synonymous GL193925.1 samtools variation 385812 385812 . . . alleles " G A"; frequencies " 0.348837209302326 0.651162790697674"; depth 43 ; known ; synonymous GL193925.1 samtools variation 387226 387226 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL193926.1 samtools variation 114730 114730 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL193926.1 samtools variation 114955 114955 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193926.1 samtools variation 115181 115181 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; known ; N/A GL193926.1 samtools variation 115221 115221 . . . alleles " G A"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; known ; N/A GL193926.1 samtools variation 115563 115563 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL193926.1 samtools variation 115620 115620 . . . alleles " A G"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL193926.1 samtools variation 115866 115866 . . . alleles " T A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; N/A GL193926.1 samtools variation 116114 116114 . . . alleles " G A"; frequencies " 0.720930232558139 0.27906976744186"; depth 43 ; known ; N/A GL193926.1 samtools variation 116194 116194 . . . alleles " A G"; frequencies " 0.287671232876712 0.712328767123288"; depth 73 ; known ; N/A GL193926.1 samtools variation 116444 116444 . . . alleles " A G"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; known ; synonymous GL193926.1 samtools variation 426445 426445 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL193926.1 samtools variation 426565 426565 . . . alleles " A T"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; unknown ; N/A GL193926.1 samtools variation 426700 426700 . . . alleles " G A"; frequencies " 0.590551181102362 0.409448818897638"; depth 127 ; unknown ; N/A GL193926.1 samtools variation 426762 426762 . . . alleles " T G"; frequencies " 0.589473684210526 0.410526315789474"; depth 95 ; unknown ; N/A GL193926.1 samtools variation 427007 427007 . . . alleles " C T"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL193926.1 samtools variation 427018 427018 . . . alleles " A G"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL193926.1 samtools variation 427103 427103 . . . alleles " T C"; frequencies " 0.553191489361702 0.446808510638298"; depth 94 ; unknown ; N/A GL193926.1 samtools variation 427308 427308 . . . alleles " T C"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL193926.1 samtools variation 427350 427350 . . . alleles " C T"; frequencies " 0.304347826086957 0.695652173913043"; depth 46 ; unknown ; N/A GL193926.1 samtools variation 427383 427383 . . . alleles " T C"; frequencies " 0.53125 0.46875"; depth 64 ; unknown ; N/A GL193926.1 samtools variation 427449 427449 . . . alleles " C T"; frequencies " 0.768421052631579 0.231578947368421"; depth 95 ; unknown ; N/A GL193926.1 samtools variation 427492 427492 . . . alleles " A G"; frequencies " 0.496240601503759 0.503759398496241"; depth 133 ; unknown ; N/A GL193926.1 samtools variation 427535 427535 . . . alleles " T C"; frequencies " 0.751479289940828 0.248520710059172"; depth 169 ; unknown ; N/A GL193926.1 samtools variation 427547 427547 . . . alleles " G A"; frequencies " 0.751824817518248 0.248175182481752"; depth 137 ; unknown ; N/A GL193926.1 samtools variation 427652 427652 . . . alleles " A G"; frequencies " 0.683333333333333 0.316666666666667"; depth 60 ; unknown ; N/A GL193927.1 samtools variation 51535 51535 . . . alleles " T A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL193927.1 samtools variation 315477 315477 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL193927.1 samtools variation 333242 333242 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193927.1 samtools variation 336966 336966 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193927.1 samtools variation 337108 337108 . . . alleles " A G"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL193927.1 samtools variation 402739 402739 . . . alleles " C T"; frequencies " 0.784761904761905 0.215238095238095"; depth 525 ; unknown ; N/A GL193927.1 samtools variation 404121 404121 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 110 ; unknown ; N/A GL193931.1 samtools variation 2586 2586 . . . alleles " C T"; frequencies " 0.755725190839695 0.244274809160305"; depth 131 ; known ; synonymous GL193931.1 samtools variation 13444 13444 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; known ; N/A GL193931.1 samtools variation 23481 23481 . . . alleles " A C"; frequencies " 0.588235294117647 0.411764705882353"; depth 136 ; unknown ; synonymous GL193931.1 samtools variation 23633 23633 . . . alleles " T C"; frequencies " 0.559322033898305 0.440677966101695"; depth 59 ; unknown ; synonymous GL193931.1 samtools variation 404872 404872 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 20 ; known ; synonymous GL193932.1 samtools variation 411303 411303 . . . alleles " C T"; frequencies " 0.781609195402299 0.218390804597701"; depth 87 ; unknown ; N/A GL193932.1 samtools variation 411858 411858 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193932.1 samtools variation 412220 412220 . . . alleles " C G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193932.1 samtools variation 412839 412839 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL193932.1 samtools variation 413170 413170 . . . alleles " C A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL193932.1 samtools variation 413299 413299 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 46 ; known ; N/A GL193932.1 samtools variation 416301 416301 . . . alleles " G T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL193932.1 samtools variation 416342 416342 . . . alleles " G A"; frequencies " 0.479166666666667 0.520833333333333"; depth 48 ; known ; N/A GL193932.1 samtools variation 416549 416549 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193932.1 samtools variation 417541 417541 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL193932.1 samtools variation 418304 418304 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 48 ; known ; N/A GL193932.1 samtools variation 420466 420466 . . . alleles " C T"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL193932.1 samtools variation 421037 421037 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 65 ; known ; N/A GL193932.1 samtools variation 421226 421226 . . . alleles " C T"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL193932.1 samtools variation 422766 422766 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL193932.1 samtools variation 423066 423066 . . . alleles " C T"; frequencies " 0.623376623376623 0.376623376623377"; depth 308 ; known ; N/A GL193932.1 samtools variation 423504 423504 . . . alleles " A C"; frequencies " 0.753826530612245 0.246173469387755"; depth 784 ; unknown ; N/A GL193932.1 samtools variation 424364 424364 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193932.1 samtools variation 425463 425463 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL193932.1 samtools variation 425550 425550 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193932.1 samtools variation 425613 425613 . . . alleles " A C"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL193933.1 samtools variation 234642 234642 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL193933.1 samtools variation 237140 237140 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 54 ; known ; N/A GL193933.1 samtools variation 237301 237301 . . . alleles " G A"; frequencies " 0.74 0.26"; depth 50 ; known ; N/A GL193933.1 samtools variation 238157 238157 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL193933.1 samtools variation 238440 238440 . . . alleles " T A"; frequencies " 0.435897435897436 0.564102564102564"; depth 78 ; known ; N/A GL193933.1 samtools variation 238541 238541 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 96 ; known ; N/A GL193933.1 samtools variation 238665 238665 . . . alleles " A T"; frequencies " 0.644444444444444 0.355555555555556"; depth 45 ; known ; N/A GL193933.1 samtools variation 239310 239310 . . . alleles " C G"; frequencies " 0.700503355704698 0.299496644295302"; depth 1192 ; known ; N/A GL193933.1 samtools variation 239933 239933 . . . alleles " T C"; frequencies " 0.392335766423358 0.607664233576642"; depth 1096 ; known ; non-synonymous GL193933.1 samtools variation 241059 241059 . . . alleles " C T"; frequencies " 0.507246376811594 0.492753623188406"; depth 69 ; known ; N/A GL193933.1 samtools variation 243586 243586 . . . alleles " A G"; frequencies " 0.528571428571429 0.471428571428571"; depth 70 ; unknown ; N/A GL193933.1 samtools variation 248269 248269 . . . alleles " C T"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL193933.1 samtools variation 265423 265423 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193933.1 samtools variation 269002 269002 . . . alleles " T C"; frequencies " 0.671232876712329 0.328767123287671"; depth 146 ; unknown ; N/A GL193933.1 samtools variation 269658 269658 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193933.1 samtools variation 271474 271474 . . . alleles " A T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL193933.1 samtools variation 274135 274135 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL193933.1 samtools variation 275528 275528 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193933.1 samtools variation 301145 301145 . . . alleles " A C"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; synonymous GL193933.1 samtools variation 301639 301639 . . . alleles " T C"; frequencies " 0.602150537634409 0.397849462365591"; depth 93 ; unknown ; non-synonymous GL193933.1 samtools variation 301751 301751 . . . alleles " C A"; frequencies " 0.477777777777778 0.522222222222222"; depth 90 ; unknown ; synonymous GL193933.1 samtools variation 302185 302185 . . . alleles " T C"; frequencies " 0.51063829787234 0.48936170212766"; depth 47 ; unknown ; non-synonymous GL193933.1 samtools variation 304999 304999 . . . alleles " T C"; frequencies " 0.591397849462366 0.408602150537634"; depth 93 ; unknown ; synonymous GL193933.1 samtools variation 305110 305110 . . . alleles " G A"; frequencies " 0.607142857142857 0.392857142857143"; depth 56 ; unknown ; synonymous GL193933.1 samtools variation 306298 306298 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 35 ; unknown ; synonymous GL193933.1 samtools variation 307162 307162 . . . alleles " T A"; frequencies " 0.53030303030303 0.46969696969697"; depth 66 ; unknown ; synonymous GL193933.1 samtools variation 307303 307303 . . . alleles " A G"; frequencies " 0.554347826086957 0.445652173913043"; depth 92 ; unknown ; synonymous GL193933.1 samtools variation 308371 308371 . . . alleles " G A"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; synonymous GL193933.1 samtools variation 308635 308635 . . . alleles " A T"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; unknown ; synonymous GL193933.1 samtools variation 308974 308974 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; synonymous GL193933.1 samtools variation 333069 333069 . . . alleles " C G"; frequencies " 0.483516483516484 0.516483516483517"; depth 91 ; unknown ; non-synonymous GL193933.1 samtools variation 341676 341676 . . . alleles " G A"; frequencies " 0.590909090909091 0.409090909090909"; depth 66 ; unknown ; non-synonymous GL193934.1 samtools variation 112705 112705 . . . alleles " A T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; N/A GL193934.1 samtools variation 154013 154013 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL193934.1 samtools variation 155283 155283 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; known ; N/A GL193934.1 samtools variation 163330 163330 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193934.1 samtools variation 169203 169203 . . . alleles " G A"; frequencies " 0.619834710743802 0.380165289256198"; depth 121 ; known ; N/A GL193934.1 samtools variation 175514 175514 . . . alleles " G A"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL193934.1 samtools variation 213644 213644 . . . alleles " G T"; frequencies " 0.56 0.44"; depth 25 ; known ; N/A GL193934.1 samtools variation 231682 231682 . . . alleles " C T"; frequencies " 0.629139072847682 0.370860927152318"; depth 151 ; unknown ; N/A GL193934.1 samtools variation 231766 231766 . . . alleles " C G"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; known ; N/A GL193934.1 samtools variation 236197 236197 . . . alleles " T C"; frequencies " 0.765625 0.234375"; depth 64 ; unknown ; N/A GL193934.1 samtools variation 237570 237570 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193934.1 samtools variation 237730 237730 . . . alleles " C T"; frequencies " 0.433333333333333 0.566666666666667"; depth 120 ; known ; synonymous GL193934.1 samtools variation 252242 252242 . . . alleles " T C"; frequencies " 0.448275862068966 0.551724137931034"; depth 87 ; known ; N/A GL193934.1 samtools variation 252359 252359 . . . alleles " C T"; frequencies " 0.578313253012048 0.421686746987952"; depth 249 ; known ; synonymous GL193934.1 samtools variation 252368 252368 . . . alleles " G T"; frequencies " 0.566371681415929 0.433628318584071"; depth 226 ; unknown ; synonymous GL193934.1 samtools variation 252573 252573 . . . alleles " T C"; frequencies " 0.44 0.56"; depth 250 ; known ; synonymous GL193934.1 samtools variation 257134 257134 . . . alleles " G A"; frequencies " 0.410958904109589 0.589041095890411"; depth 73 ; unknown ; N/A GL193934.1 samtools variation 257643 257643 . . . alleles " A G"; frequencies " 0.473520249221184 0.526479750778816"; depth 321 ; known ; synonymous GL193934.1 samtools variation 257992 257992 . . . alleles " C T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL193934.1 samtools variation 258867 258867 . . . alleles " A G"; frequencies " 0.594827586206897 0.405172413793103"; depth 116 ; known ; N/A GL193934.1 samtools variation 308022 308022 . . . alleles " T C"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; known ; N/A GL193934.1 samtools variation 393472 393472 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL193934.1 samtools variation 393890 393890 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; N/A GL193934.1 samtools variation 395356 395356 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193934.1 samtools variation 401270 401270 . . . alleles " G A"; frequencies " 0.358490566037736 0.641509433962264"; depth 53 ; known ; N/A GL193934.1 samtools variation 409753 409753 . . . alleles " A G"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; synonymous GL193934.1 samtools variation 410509 410509 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 48 ; unknown ; synonymous GL193934.1 samtools variation 411957 411957 . . . alleles " G A"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; known ; synonymous GL193936.1 samtools variation 427 427 . . . alleles " C A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193936.1 samtools variation 552 552 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL193936.1 samtools variation 621 621 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL193936.1 samtools variation 1476 1476 . . . alleles " G A"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; N/A GL193936.1 samtools variation 41678 41678 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 20 ; known ; N/A GL193936.1 samtools variation 58264 58264 . . . alleles " A G"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; known ; N/A GL193936.1 samtools variation 58389 58389 . . . alleles " T G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL193936.1 samtools variation 70614 70614 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193936.1 samtools variation 70634 70634 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193936.1 samtools variation 79588 79588 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 76 ; unknown ; N/A GL193936.1 samtools variation 80039 80039 . . . alleles " A G"; frequencies " 0.627906976744186 0.372093023255814"; depth 43 ; unknown ; N/A GL193936.1 samtools variation 83044 83044 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193936.1 samtools variation 83486 83486 . . . alleles " A T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL193936.1 samtools variation 83515 83515 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL193936.1 samtools variation 83525 83525 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193936.1 samtools variation 140127 140127 . . . alleles " G C"; frequencies " 0.533333333333333 0.466666666666667"; depth 45 ; unknown ; N/A GL193936.1 samtools variation 141120 141120 . . . alleles " T C"; frequencies " 0.201754385964912 0.798245614035088"; depth 114 ; known ; N/A GL193936.1 samtools variation 146898 146898 . . . alleles " A G"; frequencies " 0.765957446808511 0.234042553191489"; depth 141 ; unknown ; N/A GL193936.1 samtools variation 149485 149485 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; known ; N/A GL193936.1 samtools variation 155431 155431 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL193936.1 samtools variation 159000 159000 . . . alleles " A C"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; known ; N/A GL193936.1 samtools variation 172090 172090 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193936.1 samtools variation 172993 172993 . . . alleles " G A"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; known ; N/A GL193936.1 samtools variation 175301 175301 . . . alleles " A C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL193936.1 samtools variation 176489 176489 . . . alleles " A C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL193936.1 samtools variation 197585 197585 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL193936.1 samtools variation 198726 198726 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193936.1 samtools variation 201942 201942 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL193936.1 samtools variation 248647 248647 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193936.1 samtools variation 249600 249600 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193936.1 samtools variation 251077 251077 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL193936.1 samtools variation 304689 304689 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL193936.1 samtools variation 326777 326777 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL193936.1 samtools variation 335664 335664 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL193936.1 samtools variation 336126 336126 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193936.1 samtools variation 336570 336570 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL193936.1 samtools variation 337559 337559 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL193937.1 samtools variation 9261 9261 . . . alleles " T C"; frequencies " 0.633802816901408 0.366197183098592"; depth 142 ; known ; synonymous GL193937.1 samtools variation 32077 32077 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; non-synonymous GL193937.1 samtools variation 80973 80973 . . . alleles " G A"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL193937.1 samtools variation 82289 82289 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193937.1 samtools variation 82325 82325 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193937.1 samtools variation 82386 82386 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193937.1 samtools variation 91515 91515 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 72 ; known ; N/A GL193937.1 samtools variation 91552 91552 . . . alleles " G T"; frequencies " 0.508064516129032 0.491935483870968"; depth 124 ; known ; N/A GL193937.1 samtools variation 103857 103857 . . . alleles " A G"; frequencies " 0.636065573770492 0.363934426229508"; depth 305 ; unknown ; synonymous GL193937.1 samtools variation 105140 105140 . . . alleles " A C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193937.1 samtools variation 106129 106129 . . . alleles " C T"; frequencies " 0.71304347826087 0.282608695652174"; depth 230 ; unknown ; synonymous GL193937.1 samtools variation 109567 109567 . . . alleles " G A"; frequencies " 0.581497797356828 0.418502202643172"; depth 227 ; unknown ; N/A GL193937.1 samtools variation 114610 114610 . . . alleles " A G"; frequencies " 0.702970297029703 0.297029702970297"; depth 202 ; unknown ; synonymous GL193937.1 samtools variation 143846 143846 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 212 ; unknown ; N/A GL193937.1 samtools variation 143876 143876 . . . alleles " C G"; frequencies " 0.709302325581395 0.290697674418605"; depth 344 ; known ; N/A GL193937.1 samtools variation 144103 144103 . . . alleles " G A"; frequencies " 0.782945736434108 0.217054263565891"; depth 258 ; unknown ; N/A GL193937.1 samtools variation 144786 144786 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193937.1 samtools variation 159048 159048 . . . alleles " G A"; frequencies " 0.793103448275862 0.206896551724138"; depth 58 ; unknown ; synonymous GL193939.1 samtools variation 25659 25659 . . . alleles " G A"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL193939.1 samtools variation 25733 25733 . . . alleles " G T"; frequencies " 0.315068493150685 0.684931506849315"; depth 73 ; known ; N/A GL193940.1 samtools variation 253935 253935 . . . alleles " C T"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; synonymous GL193940.1 samtools variation 299144 299144 . . . alleles " T C"; frequencies " 0.210526315789474 0.789473684210526"; depth 38 ; known ; synonymous GL193940.1 samtools variation 312482 312482 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL193940.1 samtools variation 328946 328946 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; synonymous GL193943.1 samtools variation 24821 24821 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 65 ; unknown ; N/A GL193943.1 samtools variation 27632 27632 . . . alleles " T C"; frequencies " 0.482758620689655 0.517241379310345"; depth 87 ; unknown ; non-synonymous GL193943.1 samtools variation 35779 35779 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193943.1 samtools variation 160705 160705 . . . alleles " G A"; frequencies " 0.748792270531401 0.251207729468599"; depth 207 ; unknown ; N/A GL193943.1 samtools variation 160739 160739 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 240 ; unknown ; N/A GL193943.1 samtools variation 167457 167457 . . . alleles " G T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193943.1 samtools variation 168509 168509 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 134 ; unknown ; non-synonymous GL193943.1 samtools variation 169334 169334 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL193943.1 samtools variation 170989 170989 . . . alleles " G A"; frequencies " 0.428828828828829 0.569369369369369"; depth 555 ; unknown ; N/A GL193943.1 samtools variation 170995 170995 . . . alleles " A G"; frequencies " 0.410780669144981 0.589219330855019"; depth 538 ; unknown ; N/A GL193943.1 samtools variation 172089 172089 . . . alleles " T C"; frequencies " 0.651804670912951 0.348195329087049"; depth 471 ; unknown ; N/A GL193943.1 samtools variation 172148 172148 . . . alleles " G A"; frequencies " 0.721958925750395 0.278041074249605"; depth 633 ; unknown ; N/A GL193943.1 samtools variation 172202 172202 . . . alleles " G A"; frequencies " 0.602825745682888 0.397174254317111"; depth 637 ; unknown ; N/A GL193943.1 samtools variation 172206 172206 . . . alleles " T C"; frequencies " 0.72863568215892 0.271364317841079"; depth 667 ; unknown ; N/A GL193943.1 samtools variation 172391 172391 . . . alleles " G A"; frequencies " 0.376623376623377 0.623376623376623"; depth 154 ; unknown ; N/A GL193943.1 samtools variation 172501 172501 . . . alleles " G A"; frequencies " 0.415841584158416 0.584158415841584"; depth 505 ; unknown ; N/A GL193943.1 samtools variation 172584 172584 . . . alleles " A T"; frequencies " 0.364583333333333 0.635416666666667"; depth 288 ; unknown ; N/A GL193943.1 samtools variation 172642 172642 . . . alleles " C T"; frequencies " 0.350649350649351 0.649350649350649"; depth 154 ; unknown ; N/A GL193943.1 samtools variation 172871 172871 . . . alleles " C T"; frequencies " 0.403817914831131 0.596182085168869"; depth 681 ; unknown ; N/A GL193943.1 samtools variation 173612 173612 . . . alleles " C G"; frequencies " 0.303830911492735 0.694848084544254"; depth 757 ; unknown ; synonymous GL193943.1 samtools variation 174921 174921 . . . alleles " T G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193943.1 samtools variation 182513 182513 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 39 ; unknown ; synonymous GL193943.1 samtools variation 183442 183442 . . . alleles " A C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; non-synonymous GL193943.1 samtools variation 185711 185711 . . . alleles " G A"; frequencies " 0.663157894736842 0.336842105263158"; depth 95 ; unknown ; non-synonymous GL193943.1 samtools variation 185784 185784 . . . alleles " G T"; frequencies " 0.53921568627451 0.46078431372549"; depth 102 ; unknown ; synonymous GL193943.1 samtools variation 186293 186293 . . . alleles " T G"; frequencies " 0.528925619834711 0.471074380165289"; depth 121 ; unknown ; non-synonymous GL193943.1 samtools variation 187250 187250 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 80 ; unknown ; synonymous GL193943.1 samtools variation 187344 187344 . . . alleles " G A"; frequencies " 0.507936507936508 0.492063492063492"; depth 126 ; unknown ; non-synonymous GL193943.1 samtools variation 187541 187541 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; synonymous GL193943.1 samtools variation 187701 187701 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; non-synonymous GL193943.1 samtools variation 188331 188331 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 119 ; unknown ; non-synonymous GL193943.1 samtools variation 188625 188625 . . . alleles " G A"; frequencies " 0.558620689655172 0.441379310344828"; depth 290 ; unknown ; non-synonymous GL193943.1 samtools variation 191308 191308 . . . alleles " C G"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL193943.1 samtools variation 193565 193565 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL193943.1 samtools variation 195823 195823 . . . alleles " G T"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL193943.1 samtools variation 199647 199647 . . . alleles " G T"; frequencies " 0.755952380952381 0.244047619047619"; depth 336 ; unknown ; N/A GL193943.1 samtools variation 208558 208558 . . . alleles " G C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193943.1 samtools variation 219332 219332 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL193943.1 samtools variation 223958 223958 . . . alleles " C G"; frequencies " 0.276315789473684 0.723684210526316"; depth 228 ; unknown ; non-synonymous GL193943.1 samtools variation 232885 232885 . . . alleles " G C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL193943.1 samtools variation 239190 239190 . . . alleles " A G"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL193943.1 samtools variation 264364 264364 . . . alleles " A G"; frequencies " 0.676363636363636 0.323636363636364"; depth 275 ; unknown ; N/A GL193943.1 samtools variation 264733 264733 . . . alleles " C T"; frequencies " 0.668016194331984 0.331983805668016"; depth 247 ; unknown ; N/A GL193943.1 samtools variation 271841 271841 . . . alleles " G A"; frequencies " 0.259259259259259 0.740740740740741"; depth 135 ; unknown ; synonymous GL193943.1 samtools variation 282772 282772 . . . alleles " C T"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL193943.1 samtools variation 287455 287455 . . . alleles " T G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193943.1 samtools variation 301689 301689 . . . alleles " G A"; frequencies " 0.577777777777778 0.422222222222222"; depth 135 ; unknown ; synonymous GL193943.1 samtools variation 304227 304227 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL193943.1 samtools variation 304892 304892 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193943.1 samtools variation 305425 305425 . . . alleles " A T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL193943.1 samtools variation 316473 316473 . . . alleles " G C"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; unknown ; N/A GL193943.1 samtools variation 317152 317152 . . . alleles " C A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL193943.1 samtools variation 319448 319448 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193943.1 samtools variation 340741 340741 . . . alleles " G A"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; unknown ; N/A GL193943.1 samtools variation 342259 342259 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL193946.1 samtools variation 390301 390301 . . . alleles " G C"; frequencies " 0.696428571428571 0.303571428571429"; depth 168 ; known ; synonymous GL193946.1 samtools variation 390862 390862 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL193946.1 samtools variation 392276 392276 . . . alleles " T C"; frequencies " 0.747474747474748 0.252525252525253"; depth 99 ; unknown ; synonymous GL193946.1 samtools variation 392674 392674 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL193946.1 samtools variation 395040 395040 . . . alleles " G A"; frequencies " 0.414634146341463 0.585365853658537"; depth 123 ; known ; non-synonymous GL193946.1 samtools variation 397402 397402 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; N/A GL193946.1 samtools variation 400637 400637 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL193946.1 samtools variation 400650 400650 . . . alleles " T C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL193946.1 samtools variation 400971 400971 . . . alleles " G A"; frequencies " 0.643835616438356 0.356164383561644"; depth 73 ; unknown ; N/A GL193946.1 samtools variation 409132 409132 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL193946.1 samtools variation 409230 409230 . . . alleles " C T"; frequencies " 0.696428571428571 0.303571428571429"; depth 56 ; unknown ; N/A GL193946.1 samtools variation 409294 409294 . . . alleles " A G"; frequencies " 0.423076923076923 0.576923076923077"; depth 52 ; unknown ; N/A GL193946.1 samtools variation 409300 409300 . . . alleles " A G"; frequencies " 0.386363636363636 0.613636363636364"; depth 44 ; unknown ; N/A GL193946.1 samtools variation 411494 411494 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193946.1 samtools variation 411585 411585 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193949.1 samtools variation 74293 74293 . . . alleles " G A"; frequencies " 0.340909090909091 0.659090909090909"; depth 44 ; known ; synonymous GL193949.1 samtools variation 76774 76774 . . . alleles " T C"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; known ; synonymous GL193949.1 samtools variation 103115 103115 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193949.1 samtools variation 125040 125040 . . . alleles " C T"; frequencies " 0.64 0.36"; depth 50 ; unknown ; synonymous GL193954.1 samtools variation 6572 6572 . . . alleles " G A"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL193954.1 samtools variation 9007 9007 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL193954.1 samtools variation 10327 10327 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL193954.1 samtools variation 26002 26002 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 234 ; known ; synonymous GL193954.1 samtools variation 27372 27372 . . . alleles " A T"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL193954.1 samtools variation 27415 27415 . . . alleles " A G"; frequencies " 0.382352941176471 0.617647058823529"; depth 34 ; known ; N/A GL193954.1 samtools variation 27718 27718 . . . alleles " G A"; frequencies " 0.675675675675676 0.324324324324324"; depth 37 ; known ; N/A GL193954.1 samtools variation 30666 30666 . . . alleles " T G"; frequencies " 0.602649006622517 0.397350993377483"; depth 302 ; unknown ; N/A GL193954.1 samtools variation 213893 213893 . . . alleles " A C"; frequencies " 0.463414634146341 0.536585365853659"; depth 123 ; unknown ; non-synonymous GL193954.1 samtools variation 216177 216177 . . . alleles " G A"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL193954.1 samtools variation 235224 235224 . . . alleles " A T"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; unknown ; N/A GL193954.1 samtools variation 282082 282082 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; non-synonymous GL193954.1 samtools variation 294427 294427 . . . alleles " A G"; frequencies " 0.758064516129032 0.241935483870968"; depth 62 ; unknown ; N/A GL193954.1 samtools variation 294487 294487 . . . alleles " C T"; frequencies " 0.774193548387097 0.225806451612903"; depth 62 ; unknown ; N/A GL193954.1 samtools variation 294694 294694 . . . alleles " A G"; frequencies " 0.530120481927711 0.469879518072289"; depth 83 ; unknown ; N/A GL193954.1 samtools variation 294827 294827 . . . alleles " T C"; frequencies " 0.646153846153846 0.353846153846154"; depth 65 ; unknown ; N/A GL193954.1 samtools variation 308339 308339 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL193954.1 samtools variation 313127 313127 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; unknown ; N/A GL193955.1 samtools variation 42435 42435 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; non-synonymous GL193955.1 samtools variation 96312 96312 . . . alleles " G A"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL193955.1 samtools variation 99934 99934 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL193955.1 samtools variation 105739 105739 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL193955.1 samtools variation 211258 211258 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 32 ; known ; N/A GL193955.1 samtools variation 211296 211296 . . . alleles " T G"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; N/A GL193955.1 samtools variation 212862 212862 . . . alleles " A C"; frequencies " 0.475 0.525"; depth 40 ; known ; N/A GL193955.1 samtools variation 219534 219534 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 24 ; known ; synonymous GL193955.1 samtools variation 221724 221724 . . . alleles " A G"; frequencies " 0.295454545454545 0.704545454545455"; depth 88 ; known ; non-synonymous GL193955.1 samtools variation 223041 223041 . . . alleles " T C"; frequencies " 0.344262295081967 0.655737704918033"; depth 61 ; known ; non-synonymous GL193955.1 samtools variation 229195 229195 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; known ; N/A GL193955.1 samtools variation 230006 230006 . . . alleles " C T"; frequencies " 0.745454545454545 0.254545454545455"; depth 55 ; unknown ; N/A GL193955.1 samtools variation 334250 334250 . . . alleles " C A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL193955.1 samtools variation 342694 342694 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193955.1 samtools variation 343125 343125 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL193955.1 samtools variation 344993 344993 . . . alleles " C T"; frequencies " 0.737327188940092 0.262672811059908"; depth 217 ; unknown ; N/A GL193955.1 samtools variation 345527 345527 . . . alleles " T C"; frequencies " 0.401574803149606 0.598425196850394"; depth 127 ; unknown ; N/A GL193955.1 samtools variation 345564 345564 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 96 ; unknown ; N/A GL193955.1 samtools variation 345799 345799 . . . alleles " A G"; frequencies " 0.203947368421053 0.796052631578947"; depth 152 ; unknown ; N/A GL193955.1 samtools variation 345841 345841 . . . alleles " T C"; frequencies " 0.646258503401361 0.353741496598639"; depth 147 ; unknown ; N/A GL193955.1 samtools variation 350299 350299 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL193955.1 samtools variation 368624 368624 . . . alleles " G A"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL193955.1 samtools variation 377718 377718 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; non-synonymous GL193956.1 samtools variation 3340 3340 . . . alleles " T C"; frequencies " 0.78 0.22"; depth 50 ; unknown ; N/A GL193956.1 samtools variation 3720 3720 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193956.1 samtools variation 4520 4520 . . . alleles " G T"; frequencies " 0.32088285229202 0.67911714770798"; depth 589 ; known ; synonymous GL193956.1 samtools variation 4927 4927 . . . alleles " G T"; frequencies " 0.780821917808219 0.219178082191781"; depth 73 ; unknown ; N/A GL193956.1 samtools variation 4975 4975 . . . alleles " A G"; frequencies " 0.770491803278688 0.229508196721311"; depth 61 ; unknown ; N/A GL193956.1 samtools variation 5931 5931 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; N/A GL193956.1 samtools variation 6016 6016 . . . alleles " A G"; frequencies " 0.695652173913043 0.304347826086957"; depth 92 ; unknown ; N/A GL193956.1 samtools variation 6057 6057 . . . alleles " G A"; frequencies " 0.633333333333333 0.366666666666667"; depth 60 ; unknown ; N/A GL193956.1 samtools variation 6235 6235 . . . alleles " G A"; frequencies " 0.778645833333333 0.21875"; depth 384 ; unknown ; synonymous GL193956.1 samtools variation 9545 9545 . . . alleles " A G"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; unknown ; N/A GL193956.1 samtools variation 9585 9585 . . . alleles " C T"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; unknown ; N/A GL193956.1 samtools variation 10544 10544 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; known ; N/A GL193956.1 samtools variation 10574 10574 . . . alleles " A C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL193956.1 samtools variation 10703 10703 . . . alleles " T C"; frequencies " 0.613333333333333 0.386666666666667"; depth 75 ; unknown ; N/A GL193956.1 samtools variation 14468 14468 . . . alleles " G A"; frequencies " 0.609179415855355 0.390820584144645"; depth 719 ; known ; synonymous GL193956.1 samtools variation 14603 14603 . . . alleles " G A"; frequencies " 0.729896907216495 0.270103092783505"; depth 485 ; unknown ; synonymous GL193956.1 samtools variation 15261 15261 . . . alleles " C T"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL193956.1 samtools variation 15262 15262 . . . alleles " T G"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL193956.1 samtools variation 15854 15854 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 42 ; known ; N/A GL193956.1 samtools variation 16231 16231 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 60 ; unknown ; N/A GL193956.1 samtools variation 17742 17742 . . . alleles " G T"; frequencies " 0.658536585365854 0.341463414634146"; depth 41 ; known ; N/A GL193956.1 samtools variation 19138 19138 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; known ; N/A GL193956.1 samtools variation 20130 20130 . . . alleles " A G"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL193956.1 samtools variation 21542 21542 . . . alleles " C T"; frequencies " 0.719298245614035 0.280701754385965"; depth 57 ; unknown ; N/A GL193956.1 samtools variation 23401 23401 . . . alleles " G A"; frequencies " 0.585858585858586 0.414141414141414"; depth 99 ; known ; N/A GL193956.1 samtools variation 23636 23636 . . . alleles " G A"; frequencies " 0.656716417910448 0.343283582089552"; depth 67 ; known ; N/A GL193956.1 samtools variation 24618 24618 . . . alleles " G A"; frequencies " 0.430769230769231 0.569230769230769"; depth 65 ; known ; N/A GL193956.1 samtools variation 25439 25439 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 114 ; unknown ; N/A GL193956.1 samtools variation 25472 25472 . . . alleles " C T"; frequencies " 0.786324786324786 0.205128205128205"; depth 117 ; unknown ; N/A GL193956.1 samtools variation 26025 26025 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 52 ; unknown ; N/A GL193956.1 samtools variation 26298 26298 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL193956.1 samtools variation 26358 26358 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL193956.1 samtools variation 26675 26675 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 65 ; known ; N/A GL193956.1 samtools variation 32732 32732 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL193956.1 samtools variation 33160 33160 . . . alleles " G T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL193956.1 samtools variation 34055 34055 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL193956.1 samtools variation 39384 39384 . . . alleles " C G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193956.1 samtools variation 42194 42194 . . . alleles " G A"; frequencies " 0.741721854304636 0.258278145695364"; depth 151 ; unknown ; N/A GL193956.1 samtools variation 45751 45751 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193956.1 samtools variation 57111 57111 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193956.1 samtools variation 57128 57128 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL193956.1 samtools variation 57548 57548 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL193956.1 samtools variation 57563 57563 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193956.1 samtools variation 58332 58332 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193956.1 samtools variation 58564 58564 . . . alleles " T A"; frequencies " 0.25 0.75"; depth 32 ; known ; N/A GL193956.1 samtools variation 58681 58681 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 20 ; known ; N/A GL193956.1 samtools variation 62606 62606 . . . alleles " C T"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL193956.1 samtools variation 123890 123890 . . . alleles " C A"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; unknown ; non-synonymous GL193957.1 samtools variation 285527 285527 . . . alleles " A G"; frequencies " 0.330508474576271 0.669491525423729"; depth 118 ; known ; N/A GL193957.1 samtools variation 285533 285533 . . . alleles " A G"; frequencies " 0.56 0.44"; depth 100 ; unknown ; N/A GL193957.1 samtools variation 286293 286293 . . . alleles " T C"; frequencies " 0.580808080808081 0.419191919191919"; depth 198 ; unknown ; N/A GL193959.1 samtools variation 239917 239917 . . . alleles " C T"; frequencies " 0.651162790697674 0.348837209302326"; depth 86 ; unknown ; synonymous GL193960.1 samtools variation 6350 6350 . . . alleles " T A"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; N/A GL193960.1 samtools variation 8200 8200 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; known ; N/A GL193960.1 samtools variation 8800 8800 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193960.1 samtools variation 8849 8849 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL193960.1 samtools variation 21292 21292 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; known ; N/A GL193960.1 samtools variation 21776 21776 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL193960.1 samtools variation 55853 55853 . . . alleles " A T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL193960.1 samtools variation 71369 71369 . . . alleles " C A"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL193960.1 samtools variation 80621 80621 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193960.1 samtools variation 80750 80750 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193960.1 samtools variation 83989 83989 . . . alleles " T C"; frequencies " 0.271739130434783 0.728260869565217"; depth 184 ; known ; synonymous GL193960.1 samtools variation 86388 86388 . . . alleles " T A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193960.1 samtools variation 86428 86428 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193960.1 samtools variation 89507 89507 . . . alleles " C G"; frequencies " 0.783132530120482 0.216867469879518"; depth 166 ; unknown ; N/A GL193960.1 samtools variation 94813 94813 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL193960.1 samtools variation 212465 212465 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193960.1 samtools variation 219695 219695 . . . alleles " G A"; frequencies " 0.492957746478873 0.507042253521127"; depth 142 ; unknown ; synonymous GL193960.1 samtools variation 220037 220037 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 60 ; unknown ; N/A GL193960.1 samtools variation 220058 220058 . . . alleles " T G"; frequencies " 0.673076923076923 0.326923076923077"; depth 52 ; unknown ; N/A GL193960.1 samtools variation 220145 220145 . . . alleles " A C"; frequencies " 0.728813559322034 0.271186440677966"; depth 177 ; unknown ; N/A GL193960.1 samtools variation 220742 220742 . . . alleles " C T"; frequencies " 0.702970297029703 0.297029702970297"; depth 101 ; unknown ; N/A GL193960.1 samtools variation 221315 221315 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193960.1 samtools variation 221351 221351 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193960.1 samtools variation 222377 222377 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193960.1 samtools variation 225299 225299 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; N/A GL193960.1 samtools variation 236251 236251 . . . alleles " C G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL193960.1 samtools variation 237205 237205 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL193960.1 samtools variation 238308 238308 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193960.1 samtools variation 239224 239224 . . . alleles " A C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL193960.1 samtools variation 245676 245676 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL193960.1 samtools variation 248937 248937 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL193960.1 samtools variation 250194 250194 . . . alleles " A C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193960.1 samtools variation 251612 251612 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193960.1 samtools variation 256558 256558 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193960.1 samtools variation 258448 258448 . . . alleles " C G"; frequencies " 0.527027027027027 0.472972972972973"; depth 74 ; known ; N/A GL193960.1 samtools variation 296262 296262 . . . alleles " T G"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL193960.1 samtools variation 296357 296357 . . . alleles " C T"; frequencies " 0.595744680851064 0.404255319148936"; depth 47 ; known ; N/A GL193960.1 samtools variation 324933 324933 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; known ; non-synonymous GL193960.1 samtools variation 337452 337452 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; non-synonymous GL193960.1 samtools variation 343425 343425 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; synonymous GL193963.1 samtools variation 28669 28669 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193963.1 samtools variation 29334 29334 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL193963.1 samtools variation 40313 40313 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL193963.1 samtools variation 60117 60117 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL193963.1 samtools variation 62951 62951 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; synonymous GL193963.1 samtools variation 188208 188208 . . . alleles " G A"; frequencies " 0.397959183673469 0.602040816326531"; depth 98 ; unknown ; N/A GL193963.1 samtools variation 188629 188629 . . . alleles " A G"; frequencies " 0.445945945945946 0.554054054054054"; depth 148 ; unknown ; N/A GL193963.1 samtools variation 251479 251479 . . . alleles " C T"; frequencies " 0.598039215686274 0.401960784313726"; depth 204 ; unknown ; N/A GL193963.1 samtools variation 251624 251624 . . . alleles " G C"; frequencies " 0.585365853658537 0.414634146341463"; depth 123 ; unknown ; N/A GL193963.1 samtools variation 251863 251863 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 32 ; unknown ; N/A GL193963.1 samtools variation 252090 252090 . . . alleles " G A"; frequencies " 0.661911554921541 0.338088445078459"; depth 701 ; unknown ; synonymous GL193963.1 samtools variation 258873 258873 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193963.1 samtools variation 280981 280981 . . . alleles " C T"; frequencies " 0.73972602739726 0.26027397260274"; depth 73 ; unknown ; synonymous GL193963.1 samtools variation 289321 289321 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193963.1 samtools variation 317738 317738 . . . alleles " T A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193963.1 samtools variation 410101 410101 . . . alleles " T G"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL193963.1 samtools variation 410138 410138 . . . alleles " T C"; frequencies " 0.612244897959184 0.387755102040816"; depth 49 ; unknown ; N/A GL193963.1 samtools variation 410167 410167 . . . alleles " G A"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL193964.1 samtools variation 261365 261365 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193964.1 samtools variation 321396 321396 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL193964.1 samtools variation 322272 322272 . . . alleles " T G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193964.1 samtools variation 346601 346601 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193964.1 samtools variation 346770 346770 . . . alleles " T A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL193964.1 samtools variation 358767 358767 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193964.1 samtools variation 383868 383868 . . . alleles " C T"; frequencies " 0.708108108108108 0.291891891891892"; depth 185 ; unknown ; synonymous GL193964.1 samtools variation 387054 387054 . . . alleles " G A"; frequencies " 0.606060606060606 0.393939393939394"; depth 66 ; unknown ; N/A GL193964.1 samtools variation 387109 387109 . . . alleles " A G"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL193964.1 samtools variation 387376 387376 . . . alleles " T G"; frequencies " 0.701492537313433 0.298507462686567"; depth 134 ; unknown ; N/A GL193964.1 samtools variation 387558 387558 . . . alleles " G A"; frequencies " 0.627906976744186 0.372093023255814"; depth 43 ; unknown ; N/A GL193964.1 samtools variation 389071 389071 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 117 ; unknown ; N/A GL193964.1 samtools variation 392039 392039 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193965.1 samtools variation 92940 92940 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL193965.1 samtools variation 93038 93038 . . . alleles " T A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193965.1 samtools variation 110123 110123 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193965.1 samtools variation 123390 123390 . . . alleles " T C"; frequencies " 0.476744186046512 0.523255813953488"; depth 86 ; unknown ; N/A GL193965.1 samtools variation 132791 132791 . . . alleles " C T"; frequencies " 0.697674418604651 0.302325581395349"; depth 43 ; unknown ; N/A GL193965.1 samtools variation 133281 133281 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL193966.1 samtools variation 243053 243053 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; known ; N/A GL193966.1 samtools variation 243069 243069 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; unknown ; N/A GL193966.1 samtools variation 243122 243122 . . . alleles " A G"; frequencies " 0.254545454545455 0.745454545454545"; depth 55 ; known ; N/A GL193966.1 samtools variation 243346 243346 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 24 ; known ; N/A GL193966.1 samtools variation 243390 243390 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 42 ; known ; N/A GL193966.1 samtools variation 243890 243890 . . . alleles " C T"; frequencies " 0.260869565217391 0.739130434782609"; depth 46 ; known ; synonymous GL193966.1 samtools variation 243999 243999 . . . alleles " A G"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; known ; non-synonymous GL193966.1 samtools variation 244046 244046 . . . alleles " C T"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; known ; synonymous GL193966.1 samtools variation 248623 248623 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; synonymous GL193966.1 samtools variation 257370 257370 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; non-synonymous GL193966.1 samtools variation 257519 257519 . . . alleles " C G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL193969.1 samtools variation 37191 37191 . . . alleles " C T"; frequencies " 0.361111111111111 0.638888888888889"; depth 72 ; known ; N/A GL193969.1 samtools variation 38779 38779 . . . alleles " T C"; frequencies " 0.74468085106383 0.25531914893617"; depth 47 ; known ; N/A GL193969.1 samtools variation 137532 137532 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL193969.1 samtools variation 166138 166138 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; non-synonymous GL193969.1 samtools variation 187866 187866 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL193969.1 samtools variation 189448 189448 . . . alleles " A G"; frequencies " 0.658227848101266 0.341772151898734"; depth 79 ; known ; N/A GL193969.1 samtools variation 271289 271289 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL193969.1 samtools variation 277153 277153 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 288 ; unknown ; synonymous GL193969.1 samtools variation 277168 277168 . . . alleles " G A"; frequencies " 0.704761904761905 0.295238095238095"; depth 315 ; unknown ; synonymous GL193969.1 samtools variation 281793 281793 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL193969.1 samtools variation 366834 366834 . . . alleles " C G"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193969.1 samtools variation 370568 370568 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL193969.1 samtools variation 377637 377637 . . . alleles " G A"; frequencies " 0.593023255813954 0.406976744186047"; depth 172 ; unknown ; N/A GL193969.1 samtools variation 377767 377767 . . . alleles " A G"; frequencies " 0.606451612903226 0.393548387096774"; depth 155 ; known ; N/A GL193969.1 samtools variation 377947 377947 . . . alleles " G A"; frequencies " 0.276381909547739 0.723618090452261"; depth 199 ; known ; N/A GL193969.1 samtools variation 378032 378032 . . . alleles " T C"; frequencies " 0.793594306049822 0.206405693950178"; depth 281 ; unknown ; N/A GL193969.1 samtools variation 378080 378080 . . . alleles " T C"; frequencies " 0.71830985915493 0.28169014084507"; depth 142 ; unknown ; N/A GL193973.1 samtools variation 19928 19928 . . . alleles " C T"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; unknown ; non-synonymous GL193973.1 samtools variation 20090 20090 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL193973.1 samtools variation 52768 52768 . . . alleles " C G"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; N/A GL193973.1 samtools variation 53664 53664 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 57 ; unknown ; N/A GL193973.1 samtools variation 53924 53924 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193973.1 samtools variation 60082 60082 . . . alleles " C T"; frequencies " 0.422018348623853 0.577981651376147"; depth 109 ; unknown ; synonymous GL193973.1 samtools variation 60355 60355 . . . alleles " A T"; frequencies " 0.306451612903226 0.693548387096774"; depth 62 ; unknown ; N/A GL193973.1 samtools variation 61073 61073 . . . alleles " T A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193973.1 samtools variation 100682 100682 . . . alleles " G A"; frequencies " 0.327586206896552 0.672413793103448"; depth 58 ; unknown ; synonymous GL193973.1 samtools variation 100831 100831 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; non-synonymous GL193973.1 samtools variation 101403 101403 . . . alleles " T C"; frequencies " 0.491228070175439 0.508771929824561"; depth 57 ; unknown ; synonymous GL193973.1 samtools variation 102587 102587 . . . alleles " G A"; frequencies " 0.78 0.22"; depth 50 ; unknown ; synonymous GL193973.1 samtools variation 105410 105410 . . . alleles " C T"; frequencies " 0.256410256410256 0.717948717948718"; depth 39 ; unknown ; synonymous GL193973.1 samtools variation 137703 137703 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; unknown ; N/A GL193977.1 samtools variation 163490 163490 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193978.1 samtools variation 159084 159084 . . . alleles " T C"; frequencies " 0.621776504297994 0.378223495702006"; depth 349 ; unknown ; N/A GL193978.1 samtools variation 160737 160737 . . . alleles " G A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL193978.1 samtools variation 161788 161788 . . . alleles " T C"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL193978.1 samtools variation 161791 161791 . . . alleles " A G"; frequencies " 0.745098039215686 0.254901960784314"; depth 51 ; unknown ; N/A GL193978.1 samtools variation 338490 338490 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL193978.1 samtools variation 360167 360167 . . . alleles " A G"; frequencies " 0.248322147651007 0.751677852348993"; depth 149 ; unknown ; non-synonymous GL193978.1 samtools variation 360302 360302 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 328 ; known ; non-synonymous GL193978.1 samtools variation 361166 361166 . . . alleles " A G"; frequencies " 0.235436893203884 0.764563106796116"; depth 412 ; known ; N/A GL193978.1 samtools variation 363670 363670 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193978.1 samtools variation 364436 364436 . . . alleles " A G"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; known ; N/A GL193978.1 samtools variation 368886 368886 . . . alleles " A C"; frequencies " 0.578313253012048 0.421686746987952"; depth 166 ; unknown ; N/A GL193978.1 samtools variation 369984 369984 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 48 ; unknown ; N/A GL193978.1 samtools variation 370352 370352 . . . alleles " T A"; frequencies " 0.785714285714286 0.214285714285714"; depth 56 ; unknown ; N/A GL193978.1 samtools variation 371101 371101 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 30 ; known ; N/A GL193978.1 samtools variation 371179 371179 . . . alleles " A C"; frequencies " 0.8 0.2"; depth 35 ; known ; N/A GL193978.1 samtools variation 371189 371189 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL193978.1 samtools variation 388453 388453 . . . alleles " G A"; frequencies " 0.712121212121212 0.287878787878788"; depth 66 ; unknown ; N/A GL193978.1 samtools variation 389306 389306 . . . alleles " C T"; frequencies " 0.774193548387097 0.225806451612903"; depth 62 ; unknown ; N/A GL193978.1 samtools variation 391014 391014 . . . alleles " G A"; frequencies " 0.693333333333333 0.306666666666667"; depth 75 ; unknown ; synonymous GL193978.1 samtools variation 391166 391166 . . . alleles " T C"; frequencies " 0.467391304347826 0.532608695652174"; depth 92 ; unknown ; non-synonymous GL193978.1 samtools variation 393452 393452 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193978.1 samtools variation 397026 397026 . . . alleles " C A"; frequencies " 0.451612903225806 0.548387096774194"; depth 62 ; unknown ; N/A GL193978.1 samtools variation 397036 397036 . . . alleles " A G"; frequencies " 0.459016393442623 0.540983606557377"; depth 61 ; unknown ; N/A GL193978.1 samtools variation 400557 400557 . . . alleles " G T"; frequencies " 0.414266117969822 0.585733882030178"; depth 729 ; unknown ; N/A GL193978.1 samtools variation 400689 400689 . . . alleles " A G"; frequencies " 0.349819059107358 0.622436670687575"; depth 829 ; known ; N/A GL193978.1 samtools variation 400704 400704 . . . alleles " C A"; frequencies " 0.731257208765859 0.268742791234141"; depth 867 ; unknown ; N/A GL193978.1 samtools variation 400914 400914 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL193978.1 samtools variation 401222 401222 . . . alleles " C T"; frequencies " 0.270588235294118 0.729411764705882"; depth 170 ; unknown ; N/A GL193978.1 samtools variation 401702 401702 . . . alleles " G A"; frequencies " 0.365853658536585 0.634146341463415"; depth 123 ; unknown ; N/A GL193978.1 samtools variation 401711 401711 . . . alleles " G A"; frequencies " 0.678899082568807 0.321100917431193"; depth 109 ; unknown ; N/A GL193978.1 samtools variation 401802 401802 . . . alleles " T C"; frequencies " 0.548780487804878 0.451219512195122"; depth 82 ; unknown ; N/A GL193978.1 samtools variation 402063 402063 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL193978.1 samtools variation 402150 402150 . . . alleles " G A"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL193978.1 samtools variation 402167 402167 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL193978.1 samtools variation 402181 402181 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL193978.1 samtools variation 402335 402335 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 42 ; unknown ; N/A GL193978.1 samtools variation 402347 402347 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 39 ; unknown ; N/A GL193978.1 samtools variation 402482 402482 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 40 ; unknown ; N/A GL193978.1 samtools variation 402516 402516 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL193978.1 samtools variation 402523 402523 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL193978.1 samtools variation 402796 402796 . . . alleles " A G"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; N/A GL193979.1 samtools variation 19086 19086 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL193979.1 samtools variation 25731 25731 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193979.1 samtools variation 28221 28221 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL193979.1 samtools variation 28457 28457 . . . alleles " G C"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL193979.1 samtools variation 29148 29148 . . . alleles " G A"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL193979.1 samtools variation 37458 37458 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL193979.1 samtools variation 37698 37698 . . . alleles " T A"; frequencies " 0.625 0.375"; depth 32 ; known ; N/A GL193979.1 samtools variation 37762 37762 . . . alleles " A G"; frequencies " 0.277777777777778 0.722222222222222"; depth 36 ; known ; N/A GL193979.1 samtools variation 37898 37898 . . . alleles " G T"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL193979.1 samtools variation 37899 37899 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL193979.1 samtools variation 38247 38247 . . . alleles " T C"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; known ; N/A GL193979.1 samtools variation 38504 38504 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193979.1 samtools variation 39748 39748 . . . alleles " T G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL193979.1 samtools variation 40366 40366 . . . alleles " C A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL193979.1 samtools variation 40503 40503 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 39 ; known ; N/A GL193979.1 samtools variation 40754 40754 . . . alleles " A T"; frequencies " 0.292682926829268 0.707317073170732"; depth 41 ; known ; N/A GL193979.1 samtools variation 41756 41756 . . . alleles " T G"; frequencies " 0.673333333333333 0.326666666666667"; depth 150 ; known ; N/A GL193979.1 samtools variation 41803 41803 . . . alleles " T C"; frequencies " 0.693877551020408 0.306122448979592"; depth 98 ; known ; N/A GL193979.1 samtools variation 42464 42464 . . . alleles " C T"; frequencies " 0.701754385964912 0.298245614035088"; depth 57 ; known ; N/A GL193979.1 samtools variation 43007 43007 . . . alleles " A T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL193979.1 samtools variation 49796 49796 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL193979.1 samtools variation 50641 50641 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193979.1 samtools variation 59242 59242 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 30 ; unknown ; N/A GL193979.1 samtools variation 62837 62837 . . . alleles " G C"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; unknown ; N/A GL193979.1 samtools variation 62883 62883 . . . alleles " G A"; frequencies " 0.595238095238095 0.404761904761905"; depth 42 ; unknown ; N/A GL193979.1 samtools variation 63731 63731 . . . alleles " G C"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL193979.1 samtools variation 63832 63832 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL193979.1 samtools variation 63869 63869 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL193979.1 samtools variation 64158 64158 . . . alleles " T C"; frequencies " 0.688888888888889 0.311111111111111"; depth 45 ; unknown ; N/A GL193979.1 samtools variation 65254 65254 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL193979.1 samtools variation 65751 65751 . . . alleles " C T"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL193979.1 samtools variation 65902 65902 . . . alleles " T C"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL193979.1 samtools variation 75496 75496 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193979.1 samtools variation 76505 76505 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193979.1 samtools variation 77439 77439 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193979.1 samtools variation 77649 77649 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL193979.1 samtools variation 78521 78521 . . . alleles " A T"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL193979.1 samtools variation 78536 78536 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL193979.1 samtools variation 78573 78573 . . . alleles " C T"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; unknown ; N/A GL193979.1 samtools variation 78872 78872 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL193979.1 samtools variation 80516 80516 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193979.1 samtools variation 80631 80631 . . . alleles " T A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193979.1 samtools variation 80826 80826 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL193979.1 samtools variation 80839 80839 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL193979.1 samtools variation 81124 81124 . . . alleles " G A"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL193979.1 samtools variation 83284 83284 . . . alleles " A T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL193979.1 samtools variation 83759 83759 . . . alleles " G A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL193979.1 samtools variation 85536 85536 . . . alleles " A G"; frequencies " 0.542635658914729 0.457364341085271"; depth 129 ; unknown ; N/A GL193979.1 samtools variation 85718 85718 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 40 ; unknown ; N/A GL193979.1 samtools variation 85747 85747 . . . alleles " C G"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; N/A GL193979.1 samtools variation 85986 85986 . . . alleles " G A"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL193979.1 samtools variation 88319 88319 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL193979.1 samtools variation 88418 88418 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193979.1 samtools variation 88760 88760 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193979.1 samtools variation 89592 89592 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL193979.1 samtools variation 90047 90047 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193979.1 samtools variation 90139 90139 . . . alleles " T G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL193979.1 samtools variation 90310 90310 . . . alleles " G C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL193979.1 samtools variation 91929 91929 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL193979.1 samtools variation 92655 92655 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193979.1 samtools variation 92971 92971 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL193979.1 samtools variation 113043 113043 . . . alleles " T C"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL193979.1 samtools variation 113101 113101 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL193979.1 samtools variation 113116 113116 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL193979.1 samtools variation 113159 113159 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL193979.1 samtools variation 137898 137898 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL193979.1 samtools variation 140722 140722 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 25 ; known ; N/A GL193979.1 samtools variation 141786 141786 . . . alleles " A G"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL193979.1 samtools variation 152531 152531 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL193979.1 samtools variation 169843 169843 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193979.1 samtools variation 175250 175250 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL193979.1 samtools variation 176221 176221 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL193983.1 samtools variation 31537 31537 . . . alleles " A G"; frequencies " 0.364864864864865 0.635135135135135"; depth 74 ; unknown ; N/A GL193983.1 samtools variation 35297 35297 . . . alleles " A G"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL193983.1 samtools variation 36162 36162 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193983.1 samtools variation 56446 56446 . . . alleles " C T"; frequencies " 0.737704918032787 0.262295081967213"; depth 61 ; unknown ; non-synonymous GL193983.1 samtools variation 187921 187921 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193983.1 samtools variation 271465 271465 . . . alleles " A G"; frequencies " 0.75625 0.24375"; depth 160 ; unknown ; N/A GL193983.1 samtools variation 271992 271992 . . . alleles " C T"; frequencies " 0.756756756756757 0.243243243243243"; depth 74 ; unknown ; N/A GL193983.1 samtools variation 272996 272996 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 56 ; unknown ; N/A GL193983.1 samtools variation 273927 273927 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL193983.1 samtools variation 278045 278045 . . . alleles " A G"; frequencies " 0.343558282208589 0.656441717791411"; depth 163 ; unknown ; N/A GL193983.1 samtools variation 317910 317910 . . . alleles " G A"; frequencies " 0.75 0.233333333333333"; depth 60 ; unknown ; synonymous GL193983.1 samtools variation 335416 335416 . . . alleles " C T"; frequencies " 0.276595744680851 0.723404255319149"; depth 47 ; known ; synonymous GL193983.1 samtools variation 335650 335650 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 80 ; unknown ; non-synonymous GL193983.1 samtools variation 340543 340543 . . . alleles " G A"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; synonymous GL193983.1 samtools variation 369609 369609 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL193983.1 samtools variation 387626 387626 . . . alleles " A G"; frequencies " 0.766153846153846 0.233846153846154"; depth 325 ; unknown ; N/A GL193983.1 samtools variation 388103 388103 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 72 ; known ; N/A GL193983.1 samtools variation 398766 398766 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193985.1 samtools variation 260433 260433 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 66 ; unknown ; N/A GL193985.1 samtools variation 260466 260466 . . . alleles " A G"; frequencies " 0.78125 0.21875"; depth 64 ; unknown ; N/A GL193985.1 samtools variation 261430 261430 . . . alleles " A G"; frequencies " 0.76878612716763 0.23121387283237"; depth 173 ; unknown ; N/A GL193985.1 samtools variation 262911 262911 . . . alleles " A C"; frequencies " 0.438202247191011 0.561797752808989"; depth 89 ; unknown ; N/A GL193985.1 samtools variation 263024 263024 . . . alleles " C T"; frequencies " 0.559633027522936 0.440366972477064"; depth 109 ; unknown ; N/A GL193985.1 samtools variation 263109 263109 . . . alleles " C G"; frequencies " 0.621848739495798 0.378151260504202"; depth 119 ; unknown ; N/A GL193985.1 samtools variation 263387 263387 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 51 ; unknown ; N/A GL193985.1 samtools variation 264066 264066 . . . alleles " C T"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; unknown ; synonymous GL193985.1 samtools variation 264135 264135 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; synonymous GL193985.1 samtools variation 264383 264383 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL193985.1 samtools variation 264463 264463 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193985.1 samtools variation 264487 264487 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL193985.1 samtools variation 267103 267103 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; synonymous GL193985.1 samtools variation 269218 269218 . . . alleles " C T"; frequencies " 0.617021276595745 0.382978723404255"; depth 47 ; unknown ; synonymous GL193985.1 samtools variation 269989 269989 . . . alleles " A G"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; synonymous GL193985.1 samtools variation 270088 270088 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; synonymous GL193985.1 samtools variation 270193 270193 . . . alleles " C G"; frequencies " 0.679245283018868 0.320754716981132"; depth 53 ; unknown ; synonymous GL193985.1 samtools variation 307138 307138 . . . alleles " C A"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL193985.1 samtools variation 307915 307915 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL193985.1 samtools variation 308390 308390 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193985.1 samtools variation 329562 329562 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL193987.1 samtools variation 250962 250962 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL193987.1 samtools variation 299259 299259 . . . alleles " C T"; frequencies " 0.652777777777778 0.347222222222222"; depth 72 ; unknown ; non-synonymous GL193987.1 samtools variation 299347 299347 . . . alleles " C T"; frequencies " 0.627118644067797 0.372881355932203"; depth 59 ; unknown ; non-synonymous GL193987.1 samtools variation 331346 331346 . . . alleles " A C"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; unknown ; non-synonymous GL193987.1 samtools variation 331348 331348 . . . alleles " C T"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; unknown ; non-synonymous GL193987.1 samtools variation 331803 331803 . . . alleles " C T"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; known ; non-synonymous GL193987.1 samtools variation 380581 380581 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL193987.1 samtools variation 393369 393369 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL193987.1 samtools variation 393404 393404 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL193989.1 samtools variation 106274 106274 . . . alleles " A T"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; unknown ; N/A GL193989.1 samtools variation 106473 106473 . . . alleles " A T"; frequencies " 0.722222222222222 0.277777777777778"; depth 72 ; unknown ; N/A GL193989.1 samtools variation 107279 107279 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193989.1 samtools variation 108794 108794 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL193989.1 samtools variation 110791 110791 . . . alleles " T G"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL193990.1 samtools variation 180696 180696 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL193990.1 samtools variation 190570 190570 . . . alleles " C T"; frequencies " 0.688059701492537 0.31044776119403"; depth 670 ; unknown ; synonymous GL193990.1 samtools variation 190768 190768 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL193990.1 samtools variation 190839 190839 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL193990.1 samtools variation 193748 193748 . . . alleles " G A"; frequencies " 0.472622478386167 0.527377521613833"; depth 694 ; known ; non-synonymous GL193990.1 samtools variation 286613 286613 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL193990.1 samtools variation 330974 330974 . . . alleles " C T"; frequencies " 0.27536231884058 0.72463768115942"; depth 69 ; known ; synonymous GL193990.1 samtools variation 394859 394859 . . . alleles " A T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL193991.1 samtools variation 164500 164500 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL193991.1 samtools variation 165186 165186 . . . alleles " A G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL193991.1 samtools variation 273905 273905 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL193992.1 samtools variation 88584 88584 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL193992.1 samtools variation 89015 89015 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL193994.1 samtools variation 13852 13852 . . . alleles " C A"; frequencies " 0.71875 0.28125"; depth 32 ; known ; N/A GL193994.1 samtools variation 14070 14070 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; known ; N/A GL193994.1 samtools variation 14558 14558 . . . alleles " C G"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL193994.1 samtools variation 15042 15042 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL193994.1 samtools variation 16809 16809 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL193994.1 samtools variation 17495 17495 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL193994.1 samtools variation 20028 20028 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 119 ; unknown ; N/A GL193994.1 samtools variation 65854 65854 . . . alleles " G T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL193994.1 samtools variation 65889 65889 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL193997.1 samtools variation 17134 17134 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL193997.1 samtools variation 118852 118852 . . . alleles " G T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; synonymous GL193997.1 samtools variation 127455 127455 . . . alleles " A G"; frequencies " 0.754716981132076 0.245283018867925"; depth 53 ; unknown ; N/A GL193997.1 samtools variation 129004 129004 . . . alleles " A C"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; N/A GL193997.1 samtools variation 129690 129690 . . . alleles " A G"; frequencies " 0.717948717948718 0.282051282051282"; depth 117 ; known ; N/A GL193999.1 samtools variation 12866 12866 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 50 ; unknown ; N/A GL193999.1 samtools variation 13436 13436 . . . alleles " T G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL193999.1 samtools variation 46415 46415 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL193999.1 samtools variation 47054 47054 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL193999.1 samtools variation 147187 147187 . . . alleles " G A"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; synonymous GL194003.1 samtools variation 324980 324980 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 40 ; unknown ; N/A GL194003.1 samtools variation 356293 356293 . . . alleles " G C"; frequencies " 0.567901234567901 0.432098765432099"; depth 81 ; unknown ; synonymous GL194004.1 samtools variation 309665 309665 . . . alleles " C A"; frequencies " 0.751351351351351 0.248648648648649"; depth 185 ; unknown ; N/A GL194004.1 samtools variation 309763 309763 . . . alleles " A G"; frequencies " 0.789855072463768 0.210144927536232"; depth 138 ; unknown ; N/A GL194009.1 samtools variation 342 342 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL194009.1 samtools variation 2900 2900 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194009.1 samtools variation 46521 46521 . . . alleles " C T"; frequencies " 0.777070063694268 0.222929936305732"; depth 157 ; unknown ; synonymous GL194009.1 samtools variation 135999 135999 . . . alleles " C T"; frequencies " 0.791044776119403 0.208955223880597"; depth 67 ; unknown ; N/A GL194009.1 samtools variation 147560 147560 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 20 ; known ; N/A GL194009.1 samtools variation 147663 147663 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL194009.1 samtools variation 147668 147668 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL194011.1 samtools variation 35589 35589 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; synonymous GL194011.1 samtools variation 275549 275549 . . . alleles " T C"; frequencies " 0.790123456790123 0.209876543209877"; depth 81 ; known ; synonymous GL194011.1 samtools variation 279527 279527 . . . alleles " C T"; frequencies " 0.786407766990291 0.213592233009709"; depth 103 ; unknown ; synonymous GL194011.1 samtools variation 282606 282606 . . . alleles " G A"; frequencies " 0.23 0.77"; depth 100 ; known ; synonymous GL194011.1 samtools variation 285439 285439 . . . alleles " G A"; frequencies " 0.469924812030075 0.530075187969925"; depth 266 ; known ; synonymous GL194011.1 samtools variation 294025 294025 . . . alleles " G A"; frequencies " 0.595959595959596 0.404040404040404"; depth 99 ; unknown ; non-synonymous GL194011.1 samtools variation 303213 303213 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 96 ; unknown ; synonymous GL194012.1 samtools variation 11817 11817 . . . alleles " G C"; frequencies " 0.77027027027027 0.22972972972973"; depth 74 ; unknown ; N/A GL194012.1 samtools variation 12299 12299 . . . alleles " C G"; frequencies " 0.786206896551724 0.213793103448276"; depth 145 ; unknown ; N/A GL194012.1 samtools variation 18623 18623 . . . alleles " A C"; frequencies " 0.564102564102564 0.435897435897436"; depth 39 ; unknown ; N/A GL194012.1 samtools variation 18863 18863 . . . alleles " C T"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL194012.1 samtools variation 18878 18878 . . . alleles " A G"; frequencies " 0.435897435897436 0.564102564102564"; depth 39 ; unknown ; N/A GL194012.1 samtools variation 19437 19437 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL194012.1 samtools variation 22970 22970 . . . alleles " A C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL194012.1 samtools variation 24562 24562 . . . alleles " C G"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL194012.1 samtools variation 30068 30068 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL194012.1 samtools variation 30817 30817 . . . alleles " C T"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL194012.1 samtools variation 32641 32641 . . . alleles " G A"; frequencies " 0.791208791208791 0.208791208791209"; depth 91 ; unknown ; N/A GL194012.1 samtools variation 33115 33115 . . . alleles " T A"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL194012.1 samtools variation 42753 42753 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; synonymous GL194012.1 samtools variation 47573 47573 . . . alleles " T C"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; unknown ; non-synonymous GL194012.1 samtools variation 51629 51629 . . . alleles " C T"; frequencies " 0.302325581395349 0.697674418604651"; depth 43 ; unknown ; N/A GL194012.1 samtools variation 55240 55240 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL194012.1 samtools variation 56761 56761 . . . alleles " T C"; frequencies " 0.344827586206897 0.655172413793103"; depth 145 ; unknown ; synonymous GL194012.1 samtools variation 58465 58465 . . . alleles " C T"; frequencies " 0.489864864864865 0.510135135135135"; depth 296 ; unknown ; N/A GL194012.1 samtools variation 58504 58504 . . . alleles " T G"; frequencies " 0.218844984802432 0.781155015197568"; depth 329 ; unknown ; N/A GL194012.1 samtools variation 62047 62047 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; synonymous GL194012.1 samtools variation 62065 62065 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; synonymous GL194012.1 samtools variation 75450 75450 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 70 ; unknown ; synonymous GL194012.1 samtools variation 86076 86076 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL194012.1 samtools variation 87965 87965 . . . alleles " G A"; frequencies " 0.671232876712329 0.328767123287671"; depth 146 ; unknown ; non-synonymous GL194012.1 samtools variation 88326 88326 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194012.1 samtools variation 89324 89324 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194012.1 samtools variation 89389 89389 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194012.1 samtools variation 92186 92186 . . . alleles " C T"; frequencies " 0.341085271317829 0.65891472868217"; depth 129 ; unknown ; N/A GL194012.1 samtools variation 92705 92705 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL194012.1 samtools variation 93917 93917 . . . alleles " G C"; frequencies " 0.222222222222222 0.777777777777778"; depth 45 ; unknown ; non-synonymous GL194012.1 samtools variation 94447 94447 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL194012.1 samtools variation 96708 96708 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL194012.1 samtools variation 96716 96716 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL194012.1 samtools variation 100928 100928 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL194012.1 samtools variation 230410 230410 . . . alleles " C T"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL194012.1 samtools variation 236967 236967 . . . alleles " T C"; frequencies " 0.610169491525424 0.389830508474576"; depth 59 ; unknown ; N/A GL194012.1 samtools variation 270435 270435 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194012.1 samtools variation 342510 342510 . . . alleles " G C"; frequencies " 0.254545454545455 0.745454545454545"; depth 55 ; unknown ; N/A GL194012.1 samtools variation 351892 351892 . . . alleles " C G"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL194012.1 samtools variation 355772 355772 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 165 ; unknown ; N/A GL194012.1 samtools variation 365126 365126 . . . alleles " A T"; frequencies " 0.684807256235828 0.315192743764172"; depth 441 ; unknown ; N/A GL194012.1 samtools variation 367727 367727 . . . alleles " C G"; frequencies " 0.722222222222222 0.277777777777778"; depth 450 ; unknown ; synonymous GL194012.1 samtools variation 385617 385617 . . . alleles " A G"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; unknown ; N/A GL194012.1 samtools variation 386591 386591 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL194012.1 samtools variation 386616 386616 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL194012.1 samtools variation 387368 387368 . . . alleles " T G"; frequencies " 0.631578947368421 0.368421052631579"; depth 95 ; unknown ; N/A GL194012.1 samtools variation 387772 387772 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL194015.1 samtools variation 115600 115600 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL194015.1 samtools variation 240700 240700 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL194015.1 samtools variation 243405 243405 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL194015.1 samtools variation 257925 257925 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL194018.1 samtools variation 156383 156383 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL194019.1 samtools variation 141691 141691 . . . alleles " A G"; frequencies " 0.748520710059172 0.251479289940828"; depth 338 ; known ; N/A GL194019.1 samtools variation 166975 166975 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL194019.1 samtools variation 173225 173225 . . . alleles " T G"; frequencies " 0.568123393316195 0.431876606683805"; depth 389 ; known ; synonymous GL194020.1 samtools variation 12882 12882 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 20 ; unknown ; synonymous GL194020.1 samtools variation 12968 12968 . . . alleles " G C"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; non-synonymous GL194020.1 samtools variation 294697 294697 . . . alleles " T C"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; unknown ; non-synonymous GL194020.1 samtools variation 295615 295615 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL194024.1 samtools variation 4164 4164 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL194026.1 samtools variation 10637 10637 . . . alleles " T C"; frequencies " 0.653465346534653 0.346534653465347"; depth 101 ; known ; N/A GL194026.1 samtools variation 10838 10838 . . . alleles " T C"; frequencies " 0.345588235294118 0.654411764705882"; depth 136 ; known ; N/A GL194026.1 samtools variation 12572 12572 . . . alleles " G A"; frequencies " 0.797979797979798 0.202020202020202"; depth 99 ; unknown ; synonymous GL194026.1 samtools variation 28821 28821 . . . alleles " A G"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; known ; synonymous GL194026.1 samtools variation 55854 55854 . . . alleles " A G"; frequencies " 0.686274509803922 0.313725490196078"; depth 255 ; known ; synonymous GL194026.1 samtools variation 294439 294439 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 42 ; unknown ; non-synonymous GL194026.1 samtools variation 299588 299588 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL194026.1 samtools variation 302689 302689 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 63 ; unknown ; N/A GL194026.1 samtools variation 303583 303583 . . . alleles " T C"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL194026.1 samtools variation 305525 305525 . . . alleles " T C"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; unknown ; synonymous GL194026.1 samtools variation 305731 305731 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 85 ; unknown ; N/A GL194028.1 samtools variation 214558 214558 . . . alleles " C G"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; N/A GL194028.1 samtools variation 214605 214605 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL194028.1 samtools variation 214606 214606 . . . alleles " A T"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL194028.1 samtools variation 214636 214636 . . . alleles " C A"; frequencies " 0.594202898550725 0.405797101449275"; depth 69 ; unknown ; N/A GL194028.1 samtools variation 214735 214735 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 51 ; unknown ; N/A GL194028.1 samtools variation 215371 215371 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 48 ; unknown ; N/A GL194028.1 samtools variation 215842 215842 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL194028.1 samtools variation 216166 216166 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL194028.1 samtools variation 216347 216347 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; unknown ; N/A GL194028.1 samtools variation 216442 216442 . . . alleles " C A"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; unknown ; N/A GL194028.1 samtools variation 216493 216493 . . . alleles " C T"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL194028.1 samtools variation 216540 216540 . . . alleles " G A"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL194028.1 samtools variation 216576 216576 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL194030.1 samtools variation 339001 339001 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL194030.1 samtools variation 363491 363491 . . . alleles " T C"; frequencies " 0.208333333333333 0.791666666666667"; depth 24 ; known ; N/A GL194030.1 samtools variation 363507 363507 . . . alleles " G A"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL194030.1 samtools variation 363758 363758 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 30 ; known ; N/A GL194030.1 samtools variation 363950 363950 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL194030.1 samtools variation 369553 369553 . . . alleles " G T"; frequencies " 0.416666666666667 0.583333333333333"; depth 108 ; unknown ; N/A GL194030.1 samtools variation 369554 369554 . . . alleles " A T"; frequencies " 0.412844036697248 0.587155963302752"; depth 109 ; unknown ; non-synonymous GL194031.1 samtools variation 267085 267085 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 35 ; unknown ; synonymous GL194032.1 samtools variation 75128 75128 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 130 ; unknown ; N/A GL194032.1 samtools variation 81329 81329 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 95 ; known ; N/A GL194032.1 samtools variation 124205 124205 . . . alleles " G A"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; unknown ; synonymous GL194032.1 samtools variation 137211 137211 . . . alleles " G A"; frequencies " 0.432835820895522 0.567164179104478"; depth 67 ; unknown ; synonymous GL194033.1 samtools variation 260819 260819 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; synonymous GL194033.1 samtools variation 261560 261560 . . . alleles " C A"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; synonymous GL194033.1 samtools variation 274377 274377 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; synonymous GL194033.1 samtools variation 278865 278865 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; synonymous GL194033.1 samtools variation 278938 278938 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; non-synonymous GL194033.1 samtools variation 361947 361947 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; synonymous GL194034.1 samtools variation 75476 75476 . . . alleles " A C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL194034.1 samtools variation 81505 81505 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL194034.1 samtools variation 88739 88739 . . . alleles " C T"; frequencies " 0.370901639344262 0.629098360655738"; depth 488 ; known ; N/A GL194034.1 samtools variation 88857 88857 . . . alleles " A G"; frequencies " 0.593320235756385 0.406679764243615"; depth 509 ; known ; N/A GL194034.1 samtools variation 94160 94160 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194034.1 samtools variation 97572 97572 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 38 ; known ; N/A GL194034.1 samtools variation 99049 99049 . . . alleles " C T"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL194034.1 samtools variation 174147 174147 . . . alleles " C T"; frequencies " 0.352331606217617 0.647668393782383"; depth 386 ; known ; synonymous GL194034.1 samtools variation 174569 174569 . . . alleles " A G"; frequencies " 0.261904761904762 0.738095238095238"; depth 42 ; known ; N/A GL194034.1 samtools variation 174888 174888 . . . alleles " C T"; frequencies " 0.788235294117647 0.211764705882353"; depth 85 ; known ; N/A GL194034.1 samtools variation 174921 174921 . . . alleles " A C"; frequencies " 0.777777777777778 0.222222222222222"; depth 72 ; known ; N/A GL194034.1 samtools variation 176213 176213 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 64 ; known ; N/A GL194034.1 samtools variation 179399 179399 . . . alleles " C G"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; known ; N/A GL194034.1 samtools variation 180750 180750 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; N/A GL194034.1 samtools variation 186569 186569 . . . alleles " T C"; frequencies " 0.365853658536585 0.634146341463415"; depth 41 ; known ; N/A GL194034.1 samtools variation 187685 187685 . . . alleles " T C"; frequencies " 0.464285714285714 0.535714285714286"; depth 168 ; unknown ; synonymous GL194034.1 samtools variation 194396 194396 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL194034.1 samtools variation 194441 194441 . . . alleles " T C"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; known ; N/A GL194034.1 samtools variation 204288 204288 . . . alleles " A G"; frequencies " 0.317460317460317 0.682539682539683"; depth 63 ; known ; synonymous GL194034.1 samtools variation 305522 305522 . . . alleles " T C"; frequencies " 0.338983050847458 0.661016949152542"; depth 59 ; unknown ; N/A GL194036.1 samtools variation 3816 3816 . . . alleles " A G"; frequencies " 0.585365853658537 0.414634146341463"; depth 82 ; unknown ; N/A GL194037.1 samtools variation 84175 84175 . . . alleles " A C"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL194037.1 samtools variation 84236 84236 . . . alleles " G C"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL194037.1 samtools variation 85979 85979 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; synonymous GL194037.1 samtools variation 96625 96625 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; unknown ; synonymous GL194037.1 samtools variation 127782 127782 . . . alleles " T A"; frequencies " 0.469613259668508 0.530386740331492"; depth 181 ; unknown ; N/A GL194037.1 samtools variation 153296 153296 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL194037.1 samtools variation 153344 153344 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL194037.1 samtools variation 153815 153815 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 20 ; known ; N/A GL194037.1 samtools variation 155077 155077 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL194039.1 samtools variation 3061 3061 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL194039.1 samtools variation 8477 8477 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 39 ; unknown ; N/A GL194039.1 samtools variation 8530 8530 . . . alleles " C G"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; unknown ; N/A GL194039.1 samtools variation 9864 9864 . . . alleles " T A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL194039.1 samtools variation 10418 10418 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL194039.1 samtools variation 10642 10642 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL194039.1 samtools variation 10668 10668 . . . alleles " T G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL194039.1 samtools variation 11103 11103 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL194039.1 samtools variation 11156 11156 . . . alleles " T G"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; N/A GL194039.1 samtools variation 11717 11717 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL194043.1 samtools variation 224344 224344 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; unknown ; N/A GL194043.1 samtools variation 224448 224448 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194043.1 samtools variation 224481 224481 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL194046.1 samtools variation 63717 63717 . . . alleles " A G"; frequencies " 0.318007662835249 0.681992337164751"; depth 261 ; unknown ; synonymous GL194046.1 samtools variation 80501 80501 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194046.1 samtools variation 85881 85881 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL194046.1 samtools variation 104440 104440 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL194046.1 samtools variation 104537 104537 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL194046.1 samtools variation 108430 108430 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL194046.1 samtools variation 109017 109017 . . . alleles " C G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL194046.1 samtools variation 109861 109861 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL194046.1 samtools variation 109866 109866 . . . alleles " C G"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL194046.1 samtools variation 121219 121219 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL194046.1 samtools variation 123643 123643 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 48 ; unknown ; N/A GL194046.1 samtools variation 127760 127760 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL194046.1 samtools variation 128330 128330 . . . alleles " T C"; frequencies " 0.404761904761905 0.595238095238095"; depth 42 ; known ; N/A GL194046.1 samtools variation 128534 128534 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL194046.1 samtools variation 128968 128968 . . . alleles " A T"; frequencies " 0.775862068965517 0.224137931034483"; depth 58 ; unknown ; N/A GL194046.1 samtools variation 129529 129529 . . . alleles " C T"; frequencies " 0.786324786324786 0.213675213675214"; depth 117 ; unknown ; N/A GL194046.1 samtools variation 129661 129661 . . . alleles " A G"; frequencies " 0.488888888888889 0.511111111111111"; depth 45 ; unknown ; N/A GL194046.1 samtools variation 130379 130379 . . . alleles " C A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL194046.1 samtools variation 130630 130630 . . . alleles " C G"; frequencies " 0.690647482014389 0.309352517985612"; depth 139 ; unknown ; N/A GL194046.1 samtools variation 130915 130915 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 72 ; unknown ; N/A GL194046.1 samtools variation 130982 130982 . . . alleles " G C"; frequencies " 0.361702127659574 0.638297872340426"; depth 94 ; unknown ; N/A GL194046.1 samtools variation 131056 131056 . . . alleles " A G"; frequencies " 0.641304347826087 0.358695652173913"; depth 92 ; unknown ; N/A GL194046.1 samtools variation 159685 159685 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL194047.1 samtools variation 339466 339466 . . . alleles " T C"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; unknown ; synonymous GL194048.1 samtools variation 213016 213016 . . . alleles " A T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL194052.1 samtools variation 238427 238427 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194053.1 samtools variation 17104 17104 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL194053.1 samtools variation 90143 90143 . . . alleles " A T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL194053.1 samtools variation 105721 105721 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194053.1 samtools variation 145024 145024 . . . alleles " A G"; frequencies " 0.24 0.76"; depth 25 ; known ; synonymous GL194053.1 samtools variation 186251 186251 . . . alleles " A G"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; synonymous GL194053.1 samtools variation 286314 286314 . . . alleles " C A"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; non-synonymous GL194053.1 samtools variation 358188 358188 . . . alleles " C G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; synonymous GL194054.1 samtools variation 24610 24610 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL194054.1 samtools variation 25598 25598 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL194054.1 samtools variation 26984 26984 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL194054.1 samtools variation 47338 47338 . . . alleles " A C"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL194054.1 samtools variation 50339 50339 . . . alleles " A G"; frequencies " 0.398496240601504 0.601503759398496"; depth 133 ; known ; N/A GL194054.1 samtools variation 52210 52210 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL194054.1 samtools variation 53940 53940 . . . alleles " C T"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL194054.1 samtools variation 55534 55534 . . . alleles " T C"; frequencies " 0.688372093023256 0.311627906976744"; depth 215 ; unknown ; N/A GL194054.1 samtools variation 55546 55546 . . . alleles " G A"; frequencies " 0.724324324324324 0.275675675675676"; depth 185 ; known ; N/A GL194054.1 samtools variation 55680 55680 . . . alleles " C T"; frequencies " 0.725490196078431 0.274509803921569"; depth 255 ; unknown ; N/A GL194054.1 samtools variation 57103 57103 . . . alleles " C T"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL194054.1 samtools variation 73990 73990 . . . alleles " G A"; frequencies " 0.59469696969697 0.40530303030303"; depth 264 ; known ; synonymous GL194054.1 samtools variation 76965 76965 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL194054.1 samtools variation 95380 95380 . . . alleles " G C"; frequencies " 0.532467532467532 0.467532467532468"; depth 77 ; known ; N/A GL194054.1 samtools variation 98386 98386 . . . alleles " G A"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; synonymous GL194054.1 samtools variation 134469 134469 . . . alleles " C T"; frequencies " 0.336 0.664"; depth 125 ; unknown ; N/A GL194054.1 samtools variation 135777 135777 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 50 ; known ; N/A GL194054.1 samtools variation 237469 237469 . . . alleles " T C"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL194054.1 samtools variation 245547 245547 . . . alleles " T C"; frequencies " 0.784 0.216"; depth 125 ; unknown ; N/A GL194057.1 samtools variation 45203 45203 . . . alleles " A G"; frequencies " 0.790322580645161 0.209677419354839"; depth 62 ; unknown ; N/A GL194057.1 samtools variation 52478 52478 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194057.1 samtools variation 65061 65061 . . . alleles " G A"; frequencies " 0.446043165467626 0.553956834532374"; depth 139 ; unknown ; non-synonymous GL194057.1 samtools variation 71493 71493 . . . alleles " G A"; frequencies " 0.709677419354839 0.290322580645161"; depth 62 ; unknown ; synonymous GL194057.1 samtools variation 130139 130139 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; synonymous GL194057.1 samtools variation 165323 165323 . . . alleles " T A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL194057.1 samtools variation 206059 206059 . . . alleles " A C"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; synonymous GL194057.1 samtools variation 219512 219512 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; non-synonymous GL194057.1 samtools variation 249117 249117 . . . alleles " T C"; frequencies " 0.528 0.472"; depth 125 ; known ; N/A GL194057.1 samtools variation 251305 251305 . . . alleles " G A"; frequencies " 0.623529411764706 0.376470588235294"; depth 85 ; unknown ; N/A GL194057.1 samtools variation 270267 270267 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL194057.1 samtools variation 270805 270805 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 60 ; known ; N/A GL194057.1 samtools variation 271535 271535 . . . alleles " G T"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; unknown ; N/A GL194057.1 samtools variation 273110 273110 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 50 ; unknown ; N/A GL194057.1 samtools variation 281502 281502 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL194057.1 samtools variation 295360 295360 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; synonymous GL194057.1 samtools variation 319336 319336 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; synonymous GL194057.1 samtools variation 326390 326390 . . . alleles " C G"; frequencies " 0.513888888888889 0.486111111111111"; depth 72 ; known ; synonymous GL194058.1 samtools variation 25748 25748 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL194058.1 samtools variation 42861 42861 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; unknown ; N/A GL194058.1 samtools variation 44501 44501 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194058.1 samtools variation 44753 44753 . . . alleles " G T"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL194058.1 samtools variation 45638 45638 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL194058.1 samtools variation 45668 45668 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194058.1 samtools variation 45700 45700 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL194058.1 samtools variation 45731 45731 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL194058.1 samtools variation 49476 49476 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL194058.1 samtools variation 50667 50667 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL194058.1 samtools variation 53154 53154 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; known ; N/A GL194058.1 samtools variation 144163 144163 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL194058.1 samtools variation 144180 144180 . . . alleles " T C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; known ; N/A GL194058.1 samtools variation 215273 215273 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL194058.1 samtools variation 215279 215279 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; N/A GL194058.1 samtools variation 216740 216740 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL194058.1 samtools variation 217313 217313 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 39 ; known ; N/A GL194058.1 samtools variation 220456 220456 . . . alleles " C T"; frequencies " 0.756701030927835 0.243298969072165"; depth 485 ; known ; synonymous GL194058.1 samtools variation 220800 220800 . . . alleles " T C"; frequencies " 0.347972972972973 0.652027027027027"; depth 296 ; unknown ; non-synonymous GL194058.1 samtools variation 221210 221210 . . . alleles " C T"; frequencies " 0.75531914893617 0.24468085106383"; depth 188 ; unknown ; N/A GL194058.1 samtools variation 221492 221492 . . . alleles " G C"; frequencies " 0.756164383561644 0.243835616438356"; depth 730 ; unknown ; N/A GL194058.1 samtools variation 223347 223347 . . . alleles " A G"; frequencies " 0.690322580645161 0.309677419354839"; depth 155 ; known ; N/A GL194058.1 samtools variation 227288 227288 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL194058.1 samtools variation 228846 228846 . . . alleles " T G"; frequencies " 0.622641509433962 0.377358490566038"; depth 53 ; known ; N/A GL194058.1 samtools variation 237143 237143 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL194062.1 samtools variation 13397 13397 . . . alleles " G A"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL194062.1 samtools variation 28628 28628 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL194062.1 samtools variation 29814 29814 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 36 ; unknown ; synonymous GL194068.1 samtools variation 130452 130452 . . . alleles " C T"; frequencies " 0.702127659574468 0.297872340425532"; depth 47 ; unknown ; N/A GL194069.1 samtools variation 5198 5198 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL194069.1 samtools variation 5499 5499 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 20 ; known ; synonymous GL194069.1 samtools variation 5535 5535 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 12 ; known ; non-synonymous GL194069.1 samtools variation 5802 5802 . . . alleles " G A"; frequencies " 0.511627906976744 0.488372093023256"; depth 43 ; known ; synonymous GL194069.1 samtools variation 5834 5834 . . . alleles " T C"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; known ; non-synonymous GL194069.1 samtools variation 148248 148248 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL194069.1 samtools variation 235789 235789 . . . alleles " T C"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL194069.1 samtools variation 235900 235900 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL194070.1 samtools variation 36863 36863 . . . alleles " T C"; frequencies " 0.739837398373984 0.260162601626016"; depth 123 ; known ; N/A GL194070.1 samtools variation 187609 187609 . . . alleles " G C"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL194070.1 samtools variation 191173 191173 . . . alleles " C T"; frequencies " 0.789699570815451 0.210300429184549"; depth 233 ; unknown ; synonymous GL194070.1 samtools variation 200750 200750 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; N/A GL194070.1 samtools variation 210617 210617 . . . alleles " G T"; frequencies " 0.2 0.8"; depth 25 ; unknown ; N/A GL194070.1 samtools variation 210744 210744 . . . alleles " C T"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; known ; N/A GL194070.1 samtools variation 212585 212585 . . . alleles " A C"; frequencies " 0.797619047619048 0.202380952380952"; depth 84 ; unknown ; N/A GL194070.1 samtools variation 214736 214736 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL194070.1 samtools variation 218327 218327 . . . alleles " T G"; frequencies " 0.779411764705882 0.220588235294118"; depth 68 ; unknown ; N/A GL194070.1 samtools variation 220517 220517 . . . alleles " C G"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; known ; N/A GL194070.1 samtools variation 223654 223654 . . . alleles " A T"; frequencies " 0.451127819548872 0.548872180451128"; depth 133 ; known ; N/A GL194070.1 samtools variation 225376 225376 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL194070.1 samtools variation 236671 236671 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL194070.1 samtools variation 253323 253323 . . . alleles " C T"; frequencies " 0.404255319148936 0.595744680851064"; depth 47 ; known ; N/A GL194070.1 samtools variation 253596 253596 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194075.1 samtools variation 52480 52480 . . . alleles " G A"; frequencies " 0.674556213017751 0.325443786982249"; depth 169 ; unknown ; N/A GL194075.1 samtools variation 54600 54600 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 39 ; unknown ; synonymous GL194075.1 samtools variation 60140 60140 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL194075.1 samtools variation 87355 87355 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; non-synonymous GL194075.1 samtools variation 308512 308512 . . . alleles " G A"; frequencies " 0.36 0.64"; depth 25 ; unknown ; synonymous GL194076.1 samtools variation 2886 2886 . . . alleles " G T"; frequencies " 0.472222222222222 0.527777777777778"; depth 36 ; known ; N/A GL194076.1 samtools variation 7148 7148 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194076.1 samtools variation 8826 8826 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL194076.1 samtools variation 9863 9863 . . . alleles " C T"; frequencies " 0.612903225806452 0.387096774193548"; depth 403 ; unknown ; synonymous GL194076.1 samtools variation 14027 14027 . . . alleles " G C"; frequencies " 0.588235294117647 0.411764705882353"; depth 85 ; known ; N/A GL194076.1 samtools variation 14924 14924 . . . alleles " C G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL194076.1 samtools variation 17788 17788 . . . alleles " T C"; frequencies " 0.407407407407407 0.592592592592593"; depth 54 ; unknown ; N/A GL194076.1 samtools variation 18014 18014 . . . alleles " A G"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; unknown ; synonymous GL194077.1 samtools variation 175960 175960 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL194077.1 samtools variation 175978 175978 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194077.1 samtools variation 176254 176254 . . . alleles " C T"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL194078.1 samtools variation 235231 235231 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL194078.1 samtools variation 235439 235439 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194078.1 samtools variation 236042 236042 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL194078.1 samtools variation 243053 243053 . . . alleles " G A"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; known ; N/A GL194078.1 samtools variation 250254 250254 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL194078.1 samtools variation 320710 320710 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194078.1 samtools variation 322409 322409 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL194078.1 samtools variation 323100 323100 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL194078.1 samtools variation 327160 327160 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL194078.1 samtools variation 332681 332681 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL194078.1 samtools variation 340503 340503 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL194078.1 samtools variation 341188 341188 . . . alleles " G C"; frequencies " 0.207547169811321 0.792452830188679"; depth 53 ; unknown ; N/A GL194078.1 samtools variation 343531 343531 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194078.1 samtools variation 346390 346390 . . . alleles " T C"; frequencies " 0.592592592592593 0.402777777777778"; depth 216 ; unknown ; synonymous GL194080.1 samtools variation 277589 277589 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL194080.1 samtools variation 288201 288201 . . . alleles " C T"; frequencies " 0.494623655913978 0.505376344086022"; depth 93 ; unknown ; N/A GL194080.1 samtools variation 288488 288488 . . . alleles " T C"; frequencies " 0.565217391304348 0.434782608695652"; depth 69 ; unknown ; N/A GL194080.1 samtools variation 288565 288565 . . . alleles " T C"; frequencies " 0.574074074074074 0.425925925925926"; depth 54 ; unknown ; N/A GL194080.1 samtools variation 288614 288614 . . . alleles " G A"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL194080.1 samtools variation 288701 288701 . . . alleles " G T"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL194080.1 samtools variation 288929 288929 . . . alleles " G C"; frequencies " 0.596774193548387 0.403225806451613"; depth 62 ; unknown ; N/A GL194080.1 samtools variation 288940 288940 . . . alleles " T C"; frequencies " 0.431372549019608 0.568627450980392"; depth 51 ; known ; N/A GL194080.1 samtools variation 288949 288949 . . . alleles " G A"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; known ; N/A GL194080.1 samtools variation 289150 289150 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL194080.1 samtools variation 289523 289523 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; unknown ; N/A GL194080.1 samtools variation 289774 289774 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL194080.1 samtools variation 289845 289845 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL194080.1 samtools variation 289847 289847 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL194080.1 samtools variation 292303 292303 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL194080.1 samtools variation 295096 295096 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL194080.1 samtools variation 297586 297586 . . . alleles " T G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL194080.1 samtools variation 298940 298940 . . . alleles " G C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL194080.1 samtools variation 299432 299432 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL194086.1 samtools variation 87852 87852 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL194086.1 samtools variation 88026 88026 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL194086.1 samtools variation 88215 88215 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL194086.1 samtools variation 90171 90171 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL194086.1 samtools variation 90298 90298 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL194086.1 samtools variation 90925 90925 . . . alleles " T C"; frequencies " 0.409090909090909 0.590909090909091"; depth 44 ; unknown ; synonymous GL194086.1 samtools variation 90943 90943 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; synonymous GL194086.1 samtools variation 91731 91731 . . . alleles " C T"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; non-synonymous GL194086.1 samtools variation 92637 92637 . . . alleles " C T"; frequencies " 0.633333333333333 0.366666666666667"; depth 60 ; unknown ; non-synonymous GL194086.1 samtools variation 92917 92917 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; synonymous GL194086.1 samtools variation 93751 93751 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 32 ; unknown ; synonymous GL194086.1 samtools variation 95342 95342 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL194086.1 samtools variation 125023 125023 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL194086.1 samtools variation 125931 125931 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194087.1 samtools variation 46255 46255 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL194088.1 samtools variation 220000 220000 . . . alleles " G A"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; unknown ; N/A GL194092.1 samtools variation 63917 63917 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL194092.1 samtools variation 64031 64031 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL194092.1 samtools variation 76741 76741 . . . alleles " T C"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; N/A GL194092.1 samtools variation 228106 228106 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194092.1 samtools variation 305965 305965 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194093.1 samtools variation 166139 166139 . . . alleles " G A"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL194093.1 samtools variation 170181 170181 . . . alleles " G T"; frequencies " 0.67032967032967 0.32967032967033"; depth 91 ; known ; N/A GL194093.1 samtools variation 178341 178341 . . . alleles " C T"; frequencies " 0.566326530612245 0.433673469387755"; depth 196 ; known ; non-synonymous GL194093.1 samtools variation 186918 186918 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL194093.1 samtools variation 188991 188991 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL194093.1 samtools variation 214723 214723 . . . alleles " A C"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; known ; N/A GL194093.1 samtools variation 321439 321439 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; N/A GL194093.1 samtools variation 321451 321451 . . . alleles " T C"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL194093.1 samtools variation 321540 321540 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL194093.1 samtools variation 323215 323215 . . . alleles " T C"; frequencies " 0.269230769230769 0.730769230769231"; depth 52 ; unknown ; N/A GL194093.1 samtools variation 323297 323297 . . . alleles " A G"; frequencies " 0.257142857142857 0.742857142857143"; depth 70 ; known ; N/A GL194093.1 samtools variation 323368 323368 . . . alleles " C A"; frequencies " 0.390625 0.609375"; depth 64 ; known ; N/A GL194093.1 samtools variation 323624 323624 . . . alleles " G C"; frequencies " 0.405405405405405 0.594594594594595"; depth 37 ; known ; N/A GL194093.1 samtools variation 323644 323644 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 44 ; unknown ; N/A GL194093.1 samtools variation 325045 325045 . . . alleles " C G"; frequencies " 0.444444444444444 0.555555555555556"; depth 45 ; known ; N/A GL194093.1 samtools variation 325656 325656 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL194093.1 samtools variation 325911 325911 . . . alleles " A T"; frequencies " 0.681818181818182 0.318181818181818"; depth 44 ; known ; N/A GL194093.1 samtools variation 326836 326836 . . . alleles " G A"; frequencies " 0.65625 0.34375"; depth 32 ; known ; N/A GL194093.1 samtools variation 327651 327651 . . . alleles " A C"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL194093.1 samtools variation 333247 333247 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL194093.1 samtools variation 333418 333418 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL194093.1 samtools variation 335003 335003 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; known ; N/A GL194093.1 samtools variation 340127 340127 . . . alleles " C A"; frequencies " 0.701030927835051 0.298969072164948"; depth 97 ; known ; N/A GL194093.1 samtools variation 340252 340252 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 90 ; known ; N/A GL194093.1 samtools variation 340403 340403 . . . alleles " C T"; frequencies " 0.464516129032258 0.535483870967742"; depth 155 ; known ; N/A GL194093.1 samtools variation 341269 341269 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 80 ; known ; N/A GL194093.1 samtools variation 341282 341282 . . . alleles " C T"; frequencies " 0.694117647058824 0.305882352941176"; depth 85 ; known ; N/A GL194093.1 samtools variation 341385 341385 . . . alleles " T C"; frequencies " 0.466417910447761 0.533582089552239"; depth 268 ; known ; N/A GL194093.1 samtools variation 341571 341571 . . . alleles " C T"; frequencies " 0.469512195121951 0.530487804878049"; depth 164 ; known ; N/A GL194093.1 samtools variation 341947 341947 . . . alleles " C T"; frequencies " 0.558139534883721 0.441860465116279"; depth 129 ; known ; N/A GL194093.1 samtools variation 343173 343173 . . . alleles " T C"; frequencies " 0.557377049180328 0.442622950819672"; depth 61 ; known ; N/A GL194093.1 samtools variation 345175 345175 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL194093.1 samtools variation 345733 345733 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL194093.1 samtools variation 345890 345890 . . . alleles " A T"; frequencies " 0.526315789473684 0.473684210526316"; depth 76 ; known ; N/A GL194093.1 samtools variation 347585 347585 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL194095.1 samtools variation 20736 20736 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL194095.1 samtools variation 21241 21241 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; known ; N/A GL194095.1 samtools variation 21247 21247 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 30 ; known ; N/A GL194095.1 samtools variation 54651 54651 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL194095.1 samtools variation 54672 54672 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL194095.1 samtools variation 55930 55930 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL194095.1 samtools variation 56123 56123 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL194095.1 samtools variation 56639 56639 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL194095.1 samtools variation 56692 56692 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL194095.1 samtools variation 56932 56932 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL194095.1 samtools variation 57480 57480 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194095.1 samtools variation 57927 57927 . . . alleles " A T"; frequencies " 0.6875 0.3125"; depth 16 ; known ; N/A GL194095.1 samtools variation 58023 58023 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL194095.1 samtools variation 58036 58036 . . . alleles " C G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL194095.1 samtools variation 59952 59952 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL194095.1 samtools variation 64303 64303 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL194095.1 samtools variation 64368 64368 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL194096.1 samtools variation 47193 47193 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 144 ; known ; synonymous GL194096.1 samtools variation 99936 99936 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; non-synonymous GL194096.1 samtools variation 241960 241960 . . . alleles " G T"; frequencies " 0.725806451612903 0.274193548387097"; depth 62 ; unknown ; non-synonymous GL194096.1 samtools variation 247297 247297 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL194102.1 samtools variation 343240 343240 . . . alleles " C A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL194102.1 samtools variation 344670 344670 . . . alleles " T C"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; known ; N/A GL194104.1 samtools variation 142099 142099 . . . alleles " A C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL194104.1 samtools variation 163688 163688 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 24 ; unknown ; synonymous GL194104.1 samtools variation 221520 221520 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 24 ; unknown ; synonymous GL194104.1 samtools variation 271645 271645 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL194105.1 samtools variation 70658 70658 . . . alleles " A G"; frequencies " 0.601466992665037 0.398533007334963"; depth 409 ; known ; non-synonymous GL194105.1 samtools variation 71420 71420 . . . alleles " A C"; frequencies " 0.709459459459459 0.290540540540541"; depth 296 ; known ; non-synonymous GL194105.1 samtools variation 142618 142618 . . . alleles " T G"; frequencies " 0.69811320754717 0.30188679245283"; depth 212 ; unknown ; N/A GL194105.1 samtools variation 161961 161961 . . . alleles " T A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL194105.1 samtools variation 163094 163094 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL194105.1 samtools variation 170065 170065 . . . alleles " A T"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; N/A GL194105.1 samtools variation 173399 173399 . . . alleles " G T"; frequencies " 0.407079646017699 0.592920353982301"; depth 113 ; known ; N/A GL194109.1 samtools variation 57636 57636 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194109.1 samtools variation 59198 59198 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL194109.1 samtools variation 68799 68799 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL194109.1 samtools variation 263014 263014 . . . alleles " A G"; frequencies " 0.634615384615385 0.365384615384615"; depth 52 ; unknown ; N/A GL194109.1 samtools variation 269201 269201 . . . alleles " G A"; frequencies " 0.786666666666667 0.213333333333333"; depth 75 ; unknown ; N/A GL194109.1 samtools variation 327158 327158 . . . alleles " G T"; frequencies " 0.46551724137931 0.53448275862069"; depth 116 ; unknown ; N/A GL194109.1 samtools variation 328722 328722 . . . alleles " C T"; frequencies " 0.736 0.264"; depth 125 ; unknown ; N/A GL194109.1 samtools variation 329299 329299 . . . alleles " G A"; frequencies " 0.786666666666667 0.213333333333333"; depth 75 ; unknown ; N/A GL194109.1 samtools variation 338342 338342 . . . alleles " G A"; frequencies " 0.612244897959184 0.387755102040816"; depth 49 ; known ; N/A GL194110.1 samtools variation 200741 200741 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; synonymous GL194111.1 samtools variation 294251 294251 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 54 ; unknown ; N/A GL194114.1 samtools variation 333281 333281 . . . alleles " T C"; frequencies " 0.516129032258065 0.483870967741935"; depth 186 ; unknown ; non-synonymous GL194114.1 samtools variation 334524 334524 . . . alleles " G T"; frequencies " 0.778801843317972 0.221198156682028"; depth 217 ; unknown ; N/A GL194118.1 samtools variation 208382 208382 . . . alleles " C T"; frequencies " 0.406779661016949 0.593220338983051"; depth 59 ; unknown ; synonymous GL194118.1 samtools variation 221052 221052 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 25 ; known ; synonymous GL194118.1 samtools variation 257418 257418 . . . alleles " C T"; frequencies " 0.771929824561403 0.228070175438596"; depth 57 ; known ; synonymous GL194118.1 samtools variation 260769 260769 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 125 ; unknown ; synonymous GL194118.1 samtools variation 260829 260829 . . . alleles " A G"; frequencies " 0.752808988764045 0.247191011235955"; depth 89 ; unknown ; synonymous GL194118.1 samtools variation 263930 263930 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL194119.1 samtools variation 148854 148854 . . . alleles " C G"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; known ; N/A GL194119.1 samtools variation 149565 149565 . . . alleles " A G"; frequencies " 0.768292682926829 0.231707317073171"; depth 82 ; known ; N/A GL194119.1 samtools variation 149634 149634 . . . alleles " A C"; frequencies " 0.574803149606299 0.425196850393701"; depth 127 ; known ; N/A GL194119.1 samtools variation 189467 189467 . . . alleles " C T"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; known ; N/A GL194119.1 samtools variation 191876 191876 . . . alleles " A G"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; known ; N/A GL194119.1 samtools variation 192040 192040 . . . alleles " G T"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; known ; N/A GL194119.1 samtools variation 192110 192110 . . . alleles " G C"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; known ; N/A GL194119.1 samtools variation 194929 194929 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL194119.1 samtools variation 199122 199122 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 40 ; known ; N/A GL194119.1 samtools variation 220037 220037 . . . alleles " A G"; frequencies " 0.522388059701492 0.477611940298507"; depth 67 ; known ; synonymous GL194119.1 samtools variation 228285 228285 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL194119.1 samtools variation 228400 228400 . . . alleles " C T"; frequencies " 0.794871794871795 0.205128205128205"; depth 78 ; known ; N/A GL194119.1 samtools variation 299359 299359 . . . alleles " A T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL194122.1 samtools variation 200289 200289 . . . alleles " G C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL194123.1 samtools variation 113115 113115 . . . alleles " G C"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; N/A GL194123.1 samtools variation 239202 239202 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; known ; N/A GL194131.1 samtools variation 12737 12737 . . . alleles " T C"; frequencies " 0.576530612244898 0.423469387755102"; depth 196 ; known ; N/A GL194131.1 samtools variation 12808 12808 . . . alleles " T C"; frequencies " 0.536842105263158 0.463157894736842"; depth 190 ; known ; N/A GL194131.1 samtools variation 12905 12905 . . . alleles " G A"; frequencies " 0.681528662420382 0.318471337579618"; depth 157 ; known ; N/A GL194131.1 samtools variation 13333 13333 . . . alleles " T C"; frequencies " 0.580246913580247 0.419753086419753"; depth 81 ; known ; N/A GL194131.1 samtools variation 13651 13651 . . . alleles " C G"; frequencies " 0.505154639175258 0.494845360824742"; depth 485 ; known ; N/A GL194131.1 samtools variation 14702 14702 . . . alleles " A G"; frequencies " 0.463302752293578 0.536697247706422"; depth 218 ; known ; synonymous GL194131.1 samtools variation 14753 14753 . . . alleles " A G"; frequencies " 0.476987447698745 0.523012552301255"; depth 239 ; known ; synonymous GL194131.1 samtools variation 17290 17290 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL194131.1 samtools variation 17717 17717 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL194131.1 samtools variation 19342 19342 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL194131.1 samtools variation 20081 20081 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL194131.1 samtools variation 23921 23921 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 80 ; known ; synonymous GL194131.1 samtools variation 23966 23966 . . . alleles " T C"; frequencies " 0.621951219512195 0.378048780487805"; depth 82 ; known ; synonymous GL194131.1 samtools variation 32254 32254 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 77 ; known ; synonymous GL194131.1 samtools variation 35106 35106 . . . alleles " A G"; frequencies " 0.744897959183674 0.255102040816327"; depth 98 ; known ; synonymous GL194131.1 samtools variation 35232 35232 . . . alleles " C T"; frequencies " 0.271428571428571 0.728571428571429"; depth 70 ; known ; synonymous GL194131.1 samtools variation 35277 35277 . . . alleles " A G"; frequencies " 0.653333333333333 0.346666666666667"; depth 150 ; known ; synonymous GL194131.1 samtools variation 43892 43892 . . . alleles " T C"; frequencies " 0.764912280701754 0.235087719298246"; depth 285 ; unknown ; non-synonymous GL194131.1 samtools variation 73601 73601 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194131.1 samtools variation 184874 184874 . . . alleles " G C"; frequencies " 0.716 0.28"; depth 250 ; unknown ; synonymous GL194131.1 samtools variation 185545 185545 . . . alleles " A G"; frequencies " 0.721864951768489 0.278135048231511"; depth 622 ; unknown ; N/A GL194131.1 samtools variation 185750 185750 . . . alleles " G A"; frequencies " 0.725663716814159 0.274336283185841"; depth 339 ; unknown ; N/A GL194131.1 samtools variation 185907 185907 . . . alleles " A G"; frequencies " 0.662162162162162 0.337837837837838"; depth 148 ; unknown ; N/A GL194131.1 samtools variation 191231 191231 . . . alleles " T G"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL194131.1 samtools variation 205720 205720 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 68 ; known ; non-synonymous GL194131.1 samtools variation 230157 230157 . . . alleles " C A"; frequencies " 0.779220779220779 0.220779220779221"; depth 77 ; known ; N/A GL194131.1 samtools variation 287607 287607 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL194131.1 samtools variation 291813 291813 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194131.1 samtools variation 335047 335047 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL194131.1 samtools variation 335063 335063 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL194131.1 samtools variation 338969 338969 . . . alleles " T G"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL194135.1 samtools variation 24310 24310 . . . alleles " G A"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; unknown ; N/A GL194135.1 samtools variation 24673 24673 . . . alleles " C T"; frequencies " 0.734375 0.265625"; depth 64 ; unknown ; N/A GL194135.1 samtools variation 27637 27637 . . . alleles " A G"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; synonymous GL194135.1 samtools variation 60017 60017 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL194135.1 samtools variation 60031 60031 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL194135.1 samtools variation 60505 60505 . . . alleles " G C"; frequencies " 0.785714285714286 0.214285714285714"; depth 98 ; unknown ; synonymous GL194135.1 samtools variation 113541 113541 . . . alleles " A G"; frequencies " 0.679245283018868 0.320754716981132"; depth 53 ; unknown ; synonymous GL194135.1 samtools variation 145505 145505 . . . alleles " C T"; frequencies " 0.372549019607843 0.627450980392157"; depth 51 ; unknown ; N/A GL194135.1 samtools variation 145508 145508 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 48 ; unknown ; N/A GL194135.1 samtools variation 147264 147264 . . . alleles " C T"; frequencies " 0.206666666666667 0.793333333333333"; depth 150 ; unknown ; N/A GL194135.1 samtools variation 176642 176642 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL194135.1 samtools variation 246181 246181 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 26 ; known ; N/A GL194135.1 samtools variation 246229 246229 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL194135.1 samtools variation 248269 248269 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL194135.1 samtools variation 252761 252761 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 36 ; known ; N/A GL194135.1 samtools variation 253067 253067 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194135.1 samtools variation 254487 254487 . . . alleles " C A"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL194135.1 samtools variation 256065 256065 . . . alleles " C T"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; unknown ; N/A GL194135.1 samtools variation 259644 259644 . . . alleles " C A"; frequencies " 0.391666666666667 0.608333333333333"; depth 240 ; known ; non-synonymous GL194135.1 samtools variation 262558 262558 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL194135.1 samtools variation 269683 269683 . . . alleles " C A"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL194135.1 samtools variation 272484 272484 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL194135.1 samtools variation 275066 275066 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL194135.1 samtools variation 275077 275077 . . . alleles " C A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL194135.1 samtools variation 276448 276448 . . . alleles " T A"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL194135.1 samtools variation 277241 277241 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL194135.1 samtools variation 277784 277784 . . . alleles " A C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL194135.1 samtools variation 284367 284367 . . . alleles " G A"; frequencies " 0.694704049844237 0.305295950155763"; depth 321 ; unknown ; synonymous GL194135.1 samtools variation 303300 303300 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL194135.1 samtools variation 310767 310767 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL194135.1 samtools variation 316704 316704 . . . alleles " G A"; frequencies " 0.672131147540984 0.327868852459016"; depth 183 ; unknown ; synonymous GL194136.1 samtools variation 83728 83728 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194136.1 samtools variation 93179 93179 . . . alleles " C T"; frequencies " 0.593856655290102 0.406143344709898"; depth 293 ; unknown ; N/A GL194136.1 samtools variation 93606 93606 . . . alleles " G A"; frequencies " 0.341317365269461 0.658682634730539"; depth 501 ; known ; N/A GL194136.1 samtools variation 106000 106000 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL194136.1 samtools variation 106406 106406 . . . alleles " T C"; frequencies " 0.340425531914894 0.659574468085106"; depth 47 ; known ; N/A GL194137.1 samtools variation 307384 307384 . . . alleles " A C"; frequencies " 0.798245614035088 0.201754385964912"; depth 114 ; known ; N/A GL194137.1 samtools variation 307521 307521 . . . alleles " G A"; frequencies " 0.418604651162791 0.581395348837209"; depth 43 ; known ; N/A GL194137.1 samtools variation 307691 307691 . . . alleles " C T"; frequencies " 0.290322580645161 0.709677419354839"; depth 124 ; known ; N/A GL194137.1 samtools variation 308114 308114 . . . alleles " T C"; frequencies " 0.409090909090909 0.590909090909091"; depth 66 ; known ; N/A GL194137.1 samtools variation 308186 308186 . . . alleles " G A"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; known ; N/A GL194137.1 samtools variation 308250 308250 . . . alleles " G A"; frequencies " 0.682539682539683 0.317460317460317"; depth 63 ; known ; N/A GL194137.1 samtools variation 308558 308558 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL194137.1 samtools variation 309485 309485 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL194137.1 samtools variation 310646 310646 . . . alleles " C A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL194137.1 samtools variation 310738 310738 . . . alleles " T G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL194137.1 samtools variation 316051 316051 . . . alleles " G A"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; known ; N/A GL194137.1 samtools variation 316089 316089 . . . alleles " T C"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; known ; N/A GL194137.1 samtools variation 318987 318987 . . . alleles " G T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL194137.1 samtools variation 321036 321036 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194137.1 samtools variation 327362 327362 . . . alleles " G T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194137.1 samtools variation 327366 327366 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL194142.1 samtools variation 93579 93579 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL194142.1 samtools variation 129941 129941 . . . alleles " G T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL194142.1 samtools variation 162867 162867 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL194142.1 samtools variation 163249 163249 . . . alleles " C A"; frequencies " 0.206349206349206 0.793650793650794"; depth 63 ; known ; N/A GL194142.1 samtools variation 163464 163464 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL194142.1 samtools variation 163518 163518 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; known ; N/A GL194142.1 samtools variation 163543 163543 . . . alleles " G C"; frequencies " 0.72 0.28"; depth 25 ; known ; N/A GL194142.1 samtools variation 171171 171171 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL194142.1 samtools variation 171562 171562 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 44 ; known ; N/A GL194142.1 samtools variation 171639 171639 . . . alleles " G A"; frequencies " 0.716981132075472 0.283018867924528"; depth 53 ; known ; N/A GL194142.1 samtools variation 171925 171925 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; known ; N/A GL194142.1 samtools variation 173240 173240 . . . alleles " G T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL194142.1 samtools variation 176593 176593 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL194142.1 samtools variation 177966 177966 . . . alleles " C G"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL194142.1 samtools variation 179668 179668 . . . alleles " C A"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; known ; N/A GL194142.1 samtools variation 193351 193351 . . . alleles " G C"; frequencies " 0.746666666666667 0.253333333333333"; depth 225 ; unknown ; N/A GL194142.1 samtools variation 196219 196219 . . . alleles " G C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL194142.1 samtools variation 204399 204399 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL194142.1 samtools variation 220722 220722 . . . alleles " A G"; frequencies " 0.28 0.72"; depth 25 ; known ; N/A GL194142.1 samtools variation 224008 224008 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 120 ; known ; N/A GL194142.1 samtools variation 225380 225380 . . . alleles " C A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL194142.1 samtools variation 225383 225383 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL194142.1 samtools variation 239428 239428 . . . alleles " C T"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; known ; non-synonymous GL194142.1 samtools variation 289591 289591 . . . alleles " C A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL194143.1 samtools variation 128439 128439 . . . alleles " T A"; frequencies " 0.774603174603175 0.225396825396825"; depth 315 ; known ; non-synonymous GL194143.1 samtools variation 227622 227622 . . . alleles " C G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; non-synonymous GL194143.1 samtools variation 239229 239229 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 44 ; known ; non-synonymous GL194143.1 samtools variation 239290 239290 . . . alleles " T C"; frequencies " 0.354166666666667 0.645833333333333"; depth 48 ; known ; N/A GL194145.1 samtools variation 13208 13208 . . . alleles " A G"; frequencies " 0.394736842105263 0.605263157894737"; depth 38 ; unknown ; N/A GL194145.1 samtools variation 22524 22524 . . . alleles " T C"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL194145.1 samtools variation 26840 26840 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL194145.1 samtools variation 31201 31201 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL194145.1 samtools variation 35710 35710 . . . alleles " G C"; frequencies " 0.791666666666667 0.208333333333333"; depth 120 ; unknown ; N/A GL194145.1 samtools variation 44981 44981 . . . alleles " G T"; frequencies " 0.24 0.76"; depth 25 ; unknown ; N/A GL194145.1 samtools variation 47665 47665 . . . alleles " C T"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL194145.1 samtools variation 49817 49817 . . . alleles " G A"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL194145.1 samtools variation 64849 64849 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; unknown ; N/A GL194145.1 samtools variation 69593 69593 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL194145.1 samtools variation 69776 69776 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194145.1 samtools variation 73829 73829 . . . alleles " A G"; frequencies " 0.270833333333333 0.729166666666667"; depth 48 ; unknown ; N/A GL194145.1 samtools variation 74798 74798 . . . alleles " G A"; frequencies " 0.684913793103448 0.315086206896552"; depth 2320 ; unknown ; N/A GL194145.1 samtools variation 74992 74992 . . . alleles " A G"; frequencies " 0.570236439499305 0.429763560500695"; depth 719 ; unknown ; N/A GL194145.1 samtools variation 75764 75764 . . . alleles " T G"; frequencies " 0.568807339449541 0.431192660550459"; depth 218 ; unknown ; N/A GL194145.1 samtools variation 76020 76020 . . . alleles " T G"; frequencies " 0.539094650205761 0.460905349794239"; depth 243 ; unknown ; N/A GL194145.1 samtools variation 76110 76110 . . . alleles " T C"; frequencies " 0.359550561797753 0.640449438202247"; depth 89 ; unknown ; N/A GL194145.1 samtools variation 76122 76122 . . . alleles " T A"; frequencies " 0.35632183908046 0.64367816091954"; depth 87 ; unknown ; N/A GL194145.1 samtools variation 117821 117821 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL194145.1 samtools variation 118303 118303 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL194145.1 samtools variation 123433 123433 . . . alleles " G A"; frequencies " 0.763358778625954 0.236641221374046"; depth 131 ; unknown ; N/A GL194145.1 samtools variation 123462 123462 . . . alleles " T C"; frequencies " 0.757281553398058 0.242718446601942"; depth 103 ; unknown ; N/A GL194145.1 samtools variation 123553 123553 . . . alleles " G A"; frequencies " 0.709401709401709 0.282051282051282"; depth 117 ; unknown ; N/A GL194145.1 samtools variation 123735 123735 . . . alleles " T C"; frequencies " 0.464285714285714 0.535714285714286"; depth 84 ; unknown ; N/A GL194145.1 samtools variation 124252 124252 . . . alleles " A G"; frequencies " 0.753246753246753 0.246753246753247"; depth 77 ; unknown ; N/A GL194145.1 samtools variation 127337 127337 . . . alleles " T C"; frequencies " 0.786516853932584 0.213483146067416"; depth 89 ; unknown ; N/A GL194145.1 samtools variation 127610 127610 . . . alleles " T G"; frequencies " 0.796610169491525 0.203389830508475"; depth 59 ; unknown ; N/A GL194145.1 samtools variation 127726 127726 . . . alleles " A G"; frequencies " 0.74025974025974 0.25974025974026"; depth 77 ; unknown ; N/A GL194145.1 samtools variation 127737 127737 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 68 ; unknown ; N/A GL194145.1 samtools variation 127831 127831 . . . alleles " A G"; frequencies " 0.681318681318681 0.318681318681319"; depth 182 ; unknown ; N/A GL194145.1 samtools variation 127834 127834 . . . alleles " A G"; frequencies " 0.668508287292818 0.331491712707182"; depth 181 ; unknown ; N/A GL194145.1 samtools variation 127944 127944 . . . alleles " G A"; frequencies " 0.663934426229508 0.336065573770492"; depth 122 ; unknown ; N/A GL194145.1 samtools variation 128035 128035 . . . alleles " C T"; frequencies " 0.771084337349398 0.228915662650602"; depth 83 ; unknown ; N/A GL194145.1 samtools variation 128123 128123 . . . alleles " T C"; frequencies " 0.646341463414634 0.353658536585366"; depth 82 ; unknown ; synonymous GL194145.1 samtools variation 130301 130301 . . . alleles " T C"; frequencies " 0.722772277227723 0.277227722772277"; depth 101 ; unknown ; synonymous GL194147.1 samtools variation 276622 276622 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 48 ; unknown ; N/A GL194147.1 samtools variation 277632 277632 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL194147.1 samtools variation 278401 278401 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL194147.1 samtools variation 278640 278640 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL194147.1 samtools variation 280796 280796 . . . alleles " G A"; frequencies " 0.675 0.325"; depth 40 ; unknown ; N/A GL194147.1 samtools variation 281606 281606 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL194147.1 samtools variation 281859 281859 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL194147.1 samtools variation 282103 282103 . . . alleles " C T"; frequencies " 0.774647887323944 0.225352112676056"; depth 71 ; unknown ; N/A GL194148.1 samtools variation 263302 263302 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL194148.1 samtools variation 264142 264142 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 120 ; unknown ; N/A GL194148.1 samtools variation 264455 264455 . . . alleles " C T"; frequencies " 0.430232558139535 0.569767441860465"; depth 86 ; unknown ; synonymous GL194148.1 samtools variation 264997 264997 . . . alleles " C T"; frequencies " 0.46551724137931 0.53448275862069"; depth 58 ; unknown ; N/A GL194148.1 samtools variation 265193 265193 . . . alleles " C G"; frequencies " 0.442307692307692 0.557692307692308"; depth 52 ; unknown ; N/A GL194148.1 samtools variation 265230 265230 . . . alleles " G A"; frequencies " 0.425 0.575"; depth 40 ; unknown ; N/A GL194148.1 samtools variation 265289 265289 . . . alleles " A G"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; unknown ; N/A GL194148.1 samtools variation 265767 265767 . . . alleles " A G"; frequencies " 0.377777777777778 0.622222222222222"; depth 45 ; unknown ; N/A GL194148.1 samtools variation 266104 266104 . . . alleles " C T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL194148.1 samtools variation 266160 266160 . . . alleles " G A"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; unknown ; N/A GL194148.1 samtools variation 266573 266573 . . . alleles " T C"; frequencies " 0.377358490566038 0.622641509433962"; depth 53 ; unknown ; N/A GL194148.1 samtools variation 267267 267267 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL194148.1 samtools variation 267704 267704 . . . alleles " C T"; frequencies " 0.317460317460317 0.682539682539683"; depth 63 ; unknown ; N/A GL194148.1 samtools variation 267935 267935 . . . alleles " G T"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL194148.1 samtools variation 268227 268227 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL194151.1 samtools variation 3593 3593 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194151.1 samtools variation 3637 3637 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL194151.1 samtools variation 4929 4929 . . . alleles " G A"; frequencies " 0.53448275862069 0.46551724137931"; depth 58 ; unknown ; N/A GL194151.1 samtools variation 5957 5957 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL194151.1 samtools variation 6164 6164 . . . alleles " C T"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL194151.1 samtools variation 6196 6196 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL194151.1 samtools variation 8023 8023 . . . alleles " C G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL194151.1 samtools variation 8441 8441 . . . alleles " A T"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL194151.1 samtools variation 9075 9075 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; N/A GL194151.1 samtools variation 9113 9113 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL194151.1 samtools variation 12655 12655 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL194151.1 samtools variation 14946 14946 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL194151.1 samtools variation 35991 35991 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL194151.1 samtools variation 38867 38867 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194151.1 samtools variation 39029 39029 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL194151.1 samtools variation 39481 39481 . . . alleles " A C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL194151.1 samtools variation 40790 40790 . . . alleles " A G"; frequencies " 0.519230769230769 0.480769230769231"; depth 52 ; known ; N/A GL194151.1 samtools variation 40807 40807 . . . alleles " G T"; frequencies " 0.537313432835821 0.462686567164179"; depth 67 ; known ; N/A GL194151.1 samtools variation 41503 41503 . . . alleles " C T"; frequencies " 0.589285714285714 0.410714285714286"; depth 56 ; known ; N/A GL194151.1 samtools variation 41944 41944 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 34 ; unknown ; N/A GL194151.1 samtools variation 54626 54626 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL194151.1 samtools variation 59337 59337 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; N/A GL194151.1 samtools variation 59475 59475 . . . alleles " T C"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL194151.1 samtools variation 59575 59575 . . . alleles " A G"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; known ; N/A GL194151.1 samtools variation 59807 59807 . . . alleles " T C"; frequencies " 0.531914893617021 0.468085106382979"; depth 47 ; unknown ; N/A GL194151.1 samtools variation 59825 59825 . . . alleles " C T"; frequencies " 0.48 0.52"; depth 50 ; known ; N/A GL194151.1 samtools variation 60029 60029 . . . alleles " A C"; frequencies " 0.627272727272727 0.372727272727273"; depth 110 ; known ; N/A GL194151.1 samtools variation 60034 60034 . . . alleles " C T"; frequencies " 0.650943396226415 0.349056603773585"; depth 106 ; known ; N/A GL194151.1 samtools variation 61030 61030 . . . alleles " C T"; frequencies " 0.569767441860465 0.430232558139535"; depth 86 ; known ; N/A GL194151.1 samtools variation 61758 61758 . . . alleles " C T"; frequencies " 0.434782608695652 0.565217391304348"; depth 46 ; known ; N/A GL194151.1 samtools variation 63999 63999 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL194151.1 samtools variation 64004 64004 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL194151.1 samtools variation 64071 64071 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL194151.1 samtools variation 64315 64315 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL194151.1 samtools variation 67525 67525 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL194151.1 samtools variation 72524 72524 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL194151.1 samtools variation 83955 83955 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL194151.1 samtools variation 124072 124072 . . . alleles " G A"; frequencies " 0.67741935483871 0.32258064516129"; depth 62 ; unknown ; N/A GL194151.1 samtools variation 136467 136467 . . . alleles " A G"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; known ; N/A GL194151.1 samtools variation 140235 140235 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL194151.1 samtools variation 142180 142180 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL194151.1 samtools variation 142448 142448 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL194151.1 samtools variation 151757 151757 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194151.1 samtools variation 152498 152498 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL194151.1 samtools variation 152501 152501 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL194151.1 samtools variation 162493 162493 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL194151.1 samtools variation 162502 162502 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL194151.1 samtools variation 167028 167028 . . . alleles " A C"; frequencies " 0.64741641337386 0.35258358662614"; depth 329 ; known ; N/A GL194151.1 samtools variation 168159 168159 . . . alleles " C G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL194151.1 samtools variation 170871 170871 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 837 ; unknown ; synonymous GL194151.1 samtools variation 174976 174976 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL194151.1 samtools variation 175019 175019 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL194151.1 samtools variation 181626 181626 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL194151.1 samtools variation 181722 181722 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL194151.1 samtools variation 183350 183350 . . . alleles " C T"; frequencies " 0.792988313856427 0.207011686143573"; depth 599 ; unknown ; synonymous GL194154.1 samtools variation 5995 5995 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; known ; N/A GL194154.1 samtools variation 154123 154123 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL194154.1 samtools variation 166839 166839 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194154.1 samtools variation 168749 168749 . . . alleles " G T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL194154.1 samtools variation 168795 168795 . . . alleles " A C"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL194155.1 samtools variation 45500 45500 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL194155.1 samtools variation 66947 66947 . . . alleles " G T"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL194155.1 samtools variation 66991 66991 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL194155.1 samtools variation 79256 79256 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL194155.1 samtools variation 95088 95088 . . . alleles " C T"; frequencies " 0.371428571428571 0.628571428571429"; depth 980 ; unknown ; synonymous GL194155.1 samtools variation 99488 99488 . . . alleles " T C"; frequencies " 0.307017543859649 0.692982456140351"; depth 114 ; known ; N/A GL194155.1 samtools variation 100710 100710 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL194155.1 samtools variation 108338 108338 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; synonymous GL194155.1 samtools variation 108978 108978 . . . alleles " T C"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; known ; N/A GL194155.1 samtools variation 109859 109859 . . . alleles " A G"; frequencies " 0.320754716981132 0.679245283018868"; depth 53 ; unknown ; N/A GL194155.1 samtools variation 110310 110310 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL194155.1 samtools variation 110974 110974 . . . alleles " G A"; frequencies " 0.553846153846154 0.446153846153846"; depth 65 ; unknown ; N/A GL194155.1 samtools variation 126232 126232 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL194155.1 samtools variation 220193 220193 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 44 ; known ; N/A GL194155.1 samtools variation 220270 220270 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 40 ; known ; N/A GL194155.1 samtools variation 221460 221460 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL194155.1 samtools variation 319778 319778 . . . alleles " C T"; frequencies " 0.484615384615385 0.515384615384615"; depth 130 ; known ; N/A GL194155.1 samtools variation 319865 319865 . . . alleles " T C"; frequencies " 0.775510204081633 0.224489795918367"; depth 147 ; unknown ; N/A GL194155.1 samtools variation 322356 322356 . . . alleles " T C"; frequencies " 0.542553191489362 0.457446808510638"; depth 94 ; known ; N/A GL194155.1 samtools variation 324104 324104 . . . alleles " A G"; frequencies " 0.327433628318584 0.672566371681416"; depth 113 ; known ; N/A GL194155.1 samtools variation 324185 324185 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 75 ; unknown ; N/A GL194156.1 samtools variation 199911 199911 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL194160.1 samtools variation 21451 21451 . . . alleles " T C"; frequencies " 0.320754716981132 0.679245283018868"; depth 53 ; known ; synonymous GL194160.1 samtools variation 21517 21517 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194160.1 samtools variation 21521 21521 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194160.1 samtools variation 21640 21640 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL194160.1 samtools variation 22618 22618 . . . alleles " C T"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; unknown ; N/A GL194160.1 samtools variation 22661 22661 . . . alleles " C T"; frequencies " 0.796296296296296 0.203703703703704"; depth 54 ; unknown ; N/A GL194160.1 samtools variation 23439 23439 . . . alleles " T C"; frequencies " 0.758928571428571 0.241071428571429"; depth 112 ; unknown ; synonymous GL194160.1 samtools variation 41038 41038 . . . alleles " G A"; frequencies " 0.778688524590164 0.221311475409836"; depth 244 ; unknown ; N/A GL194160.1 samtools variation 198992 198992 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL194160.1 samtools variation 212291 212291 . . . alleles " A G"; frequencies " 0.518072289156627 0.481927710843373"; depth 83 ; unknown ; N/A GL194160.1 samtools variation 213288 213288 . . . alleles " G C"; frequencies " 0.206030150753769 0.793969849246231"; depth 199 ; known ; N/A GL194160.1 samtools variation 213370 213370 . . . alleles " A G"; frequencies " 0.709677419354839 0.290322580645161"; depth 124 ; unknown ; N/A GL194160.1 samtools variation 213765 213765 . . . alleles " A G"; frequencies " 0.691542288557214 0.308457711442786"; depth 201 ; unknown ; N/A GL194160.1 samtools variation 213828 213828 . . . alleles " C A"; frequencies " 0.492063492063492 0.507936507936508"; depth 189 ; unknown ; N/A GL194160.1 samtools variation 214051 214051 . . . alleles " C T"; frequencies " 0.67487684729064 0.32512315270936"; depth 406 ; unknown ; N/A GL194160.1 samtools variation 214385 214385 . . . alleles " C G"; frequencies " 0.755725190839695 0.244274809160305"; depth 131 ; unknown ; N/A GL194160.1 samtools variation 215851 215851 . . . alleles " G A"; frequencies " 0.694092827004219 0.305907172995781"; depth 474 ; unknown ; N/A GL194160.1 samtools variation 215905 215905 . . . alleles " G A"; frequencies " 0.497737556561086 0.502262443438914"; depth 221 ; known ; N/A GL194164.1 samtools variation 23537 23537 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL194164.1 samtools variation 24738 24738 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL194164.1 samtools variation 24789 24789 . . . alleles " G T"; frequencies " 0.222222222222222 0.777777777777778"; depth 36 ; known ; N/A GL194164.1 samtools variation 26968 26968 . . . alleles " G A"; frequencies " 0.235294117647059 0.764705882352941"; depth 51 ; unknown ; N/A GL194164.1 samtools variation 27197 27197 . . . alleles " A G"; frequencies " 0.787037037037037 0.212962962962963"; depth 108 ; unknown ; N/A GL194164.1 samtools variation 34031 34031 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL194164.1 samtools variation 35003 35003 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL194164.1 samtools variation 35090 35090 . . . alleles " G T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194164.1 samtools variation 56027 56027 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 51 ; unknown ; synonymous GL194164.1 samtools variation 148051 148051 . . . alleles " C G"; frequencies " 0.456521739130435 0.543478260869565"; depth 46 ; known ; N/A GL194164.1 samtools variation 148211 148211 . . . alleles " A G"; frequencies " 0.44954128440367 0.55045871559633"; depth 109 ; known ; N/A GL194164.1 samtools variation 148326 148326 . . . alleles " G C"; frequencies " 0.34 0.66"; depth 150 ; known ; N/A GL194164.1 samtools variation 148799 148799 . . . alleles " C G"; frequencies " 0.735294117647059 0.264705882352941"; depth 68 ; known ; N/A GL194164.1 samtools variation 149328 149328 . . . alleles " A T"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL194164.1 samtools variation 149593 149593 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL194164.1 samtools variation 151740 151740 . . . alleles " A C"; frequencies " 0.472222222222222 0.5"; depth 36 ; unknown ; N/A GL194164.1 samtools variation 160904 160904 . . . alleles " G A"; frequencies " 0.609756097560976 0.390243902439024"; depth 41 ; unknown ; synonymous GL194164.1 samtools variation 166392 166392 . . . alleles " C T"; frequencies " 0.728395061728395 0.271604938271605"; depth 81 ; unknown ; N/A GL194164.1 samtools variation 166408 166408 . . . alleles " G T"; frequencies " 0.407894736842105 0.592105263157895"; depth 76 ; known ; N/A GL194164.1 samtools variation 179901 179901 . . . alleles " G A"; frequencies " 0.400226757369614 0.599773242630385"; depth 882 ; unknown ; N/A GL194164.1 samtools variation 179985 179985 . . . alleles " G A"; frequencies " 0.758683729433272 0.241316270566728"; depth 547 ; unknown ; N/A GL194164.1 samtools variation 180025 180025 . . . alleles " C T"; frequencies " 0.386904761904762 0.613095238095238"; depth 336 ; unknown ; N/A GL194164.1 samtools variation 180331 180331 . . . alleles " G A"; frequencies " 0.59866220735786 0.40133779264214"; depth 299 ; unknown ; synonymous GL194164.1 samtools variation 180359 180359 . . . alleles " G A"; frequencies " 0.386666666666667 0.613333333333333"; depth 300 ; known ; synonymous GL194164.1 samtools variation 180461 180461 . . . alleles " C T"; frequencies " 0.78735632183908 0.21264367816092"; depth 348 ; unknown ; synonymous GL194164.1 samtools variation 180464 180464 . . . alleles " A C"; frequencies " 0.769230769230769 0.230769230769231"; depth 351 ; known ; synonymous GL194164.1 samtools variation 180485 180485 . . . alleles " A G"; frequencies " 0.77124183006536 0.228758169934641"; depth 306 ; known ; synonymous GL194164.1 samtools variation 181576 181576 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 60 ; known ; N/A GL194164.1 samtools variation 182421 182421 . . . alleles " T C"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL194164.1 samtools variation 182425 182425 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; N/A GL194164.1 samtools variation 182492 182492 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL194164.1 samtools variation 182516 182516 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL194164.1 samtools variation 182531 182531 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL194164.1 samtools variation 182575 182575 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL194164.1 samtools variation 182817 182817 . . . alleles " T C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL194164.1 samtools variation 182853 182853 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL194164.1 samtools variation 183110 183110 . . . alleles " G A"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL194164.1 samtools variation 183217 183217 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 50 ; unknown ; N/A GL194164.1 samtools variation 183348 183348 . . . alleles " A G"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; N/A GL194164.1 samtools variation 183775 183775 . . . alleles " A G"; frequencies " 0.757894736842105 0.242105263157895"; depth 95 ; unknown ; N/A GL194164.1 samtools variation 183820 183820 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 90 ; unknown ; N/A GL194164.1 samtools variation 184235 184235 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL194164.1 samtools variation 192843 192843 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL194164.1 samtools variation 193034 193034 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194164.1 samtools variation 253516 253516 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL194170.1 samtools variation 179019 179019 . . . alleles " A C"; frequencies " 0.564102564102564 0.435897435897436"; depth 39 ; unknown ; non-synonymous GL194170.1 samtools variation 179294 179294 . . . alleles " C T"; frequencies " 0.553191489361702 0.446808510638298"; depth 47 ; unknown ; synonymous GL194170.1 samtools variation 179413 179413 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; non-synonymous GL194170.1 samtools variation 181473 181473 . . . alleles " C T"; frequencies " 0.525925925925926 0.474074074074074"; depth 135 ; unknown ; N/A GL194170.1 samtools variation 182246 182246 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL194171.1 samtools variation 31896 31896 . . . alleles " T G"; frequencies " 0.490909090909091 0.509090909090909"; depth 55 ; unknown ; N/A GL194171.1 samtools variation 32730 32730 . . . alleles " C G"; frequencies " 0.712765957446808 0.287234042553192"; depth 94 ; unknown ; N/A GL194171.1 samtools variation 32756 32756 . . . alleles " T C"; frequencies " 0.620689655172414 0.379310344827586"; depth 174 ; unknown ; N/A GL194171.1 samtools variation 38004 38004 . . . alleles " T A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL194171.1 samtools variation 72697 72697 . . . alleles " T G"; frequencies " 0.21195652173913 0.78804347826087"; depth 184 ; known ; non-synonymous GL194171.1 samtools variation 91248 91248 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL194171.1 samtools variation 119331 119331 . . . alleles " C A"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL194172.1 samtools variation 14697 14697 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL194172.1 samtools variation 14721 14721 . . . alleles " A G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; N/A GL194172.1 samtools variation 14813 14813 . . . alleles " A G"; frequencies " 0.547619047619048 0.452380952380952"; depth 42 ; unknown ; N/A GL194172.1 samtools variation 18064 18064 . . . alleles " G A"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL194172.1 samtools variation 21790 21790 . . . alleles " T C"; frequencies " 0.451612903225806 0.548387096774194"; depth 62 ; unknown ; synonymous GL194172.1 samtools variation 22751 22751 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL194172.1 samtools variation 23124 23124 . . . alleles " A G"; frequencies " 0.747126436781609 0.252873563218391"; depth 87 ; unknown ; N/A GL194172.1 samtools variation 23366 23366 . . . alleles " C T"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL194172.1 samtools variation 23387 23387 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 51 ; known ; N/A GL194172.1 samtools variation 24048 24048 . . . alleles " G A"; frequencies " 0.626506024096386 0.373493975903614"; depth 83 ; unknown ; N/A GL194172.1 samtools variation 58350 58350 . . . alleles " C T"; frequencies " 0.566037735849057 0.433962264150943"; depth 53 ; unknown ; non-synonymous GL194172.1 samtools variation 80455 80455 . . . alleles " T A"; frequencies " 0.34375 0.65625"; depth 32 ; known ; N/A GL194172.1 samtools variation 84603 84603 . . . alleles " G T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL194172.1 samtools variation 97978 97978 . . . alleles " A T"; frequencies " 0.365079365079365 0.634920634920635"; depth 126 ; unknown ; N/A GL194172.1 samtools variation 189337 189337 . . . alleles " G A"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL194172.1 samtools variation 191447 191447 . . . alleles " C T"; frequencies " 0.44 0.56"; depth 25 ; known ; N/A GL194174.1 samtools variation 189386 189386 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194175.1 samtools variation 28271 28271 . . . alleles " C A"; frequencies " 0.573170731707317 0.426829268292683"; depth 82 ; known ; N/A GL194175.1 samtools variation 28802 28802 . . . alleles " G A"; frequencies " 0.563380281690141 0.436619718309859"; depth 71 ; known ; N/A GL194175.1 samtools variation 28838 28838 . . . alleles " A G"; frequencies " 0.457627118644068 0.542372881355932"; depth 59 ; known ; N/A GL194175.1 samtools variation 29014 29014 . . . alleles " T A"; frequencies " 0.452173913043478 0.547826086956522"; depth 115 ; known ; N/A GL194175.1 samtools variation 33103 33103 . . . alleles " G A"; frequencies " 0.653846153846154 0.346153846153846"; depth 52 ; unknown ; synonymous GL194175.1 samtools variation 34034 34034 . . . alleles " A G"; frequencies " 0.48 0.52"; depth 25 ; unknown ; synonymous GL194176.1 samtools variation 1777 1777 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL194176.1 samtools variation 51737 51737 . . . alleles " A T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL194176.1 samtools variation 53220 53220 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL194176.1 samtools variation 56057 56057 . . . alleles " G A"; frequencies " 0.418918918918919 0.581081081081081"; depth 148 ; unknown ; N/A GL194176.1 samtools variation 57450 57450 . . . alleles " T C"; frequencies " 0.311111111111111 0.688888888888889"; depth 45 ; unknown ; N/A GL194176.1 samtools variation 57776 57776 . . . alleles " C T"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; unknown ; N/A GL194176.1 samtools variation 61542 61542 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL194176.1 samtools variation 62255 62255 . . . alleles " T C"; frequencies " 0.305555555555556 0.694444444444444"; depth 108 ; unknown ; synonymous GL194176.1 samtools variation 68992 68992 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL194176.1 samtools variation 69054 69054 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL194176.1 samtools variation 69116 69116 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL194176.1 samtools variation 76624 76624 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL194176.1 samtools variation 77950 77950 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL194176.1 samtools variation 79448 79448 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194176.1 samtools variation 92763 92763 . . . alleles " C T"; frequencies " 0.617391304347826 0.373913043478261"; depth 115 ; unknown ; N/A GL194176.1 samtools variation 174264 174264 . . . alleles " C T"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; synonymous GL194176.1 samtools variation 212335 212335 . . . alleles " C G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL194176.1 samtools variation 266030 266030 . . . alleles " C T"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL194178.1 samtools variation 32031 32031 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194178.1 samtools variation 48922 48922 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 50 ; unknown ; non-synonymous GL194178.1 samtools variation 53768 53768 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 45 ; known ; N/A GL194178.1 samtools variation 160890 160890 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL194178.1 samtools variation 161857 161857 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194178.1 samtools variation 162752 162752 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL194178.1 samtools variation 164197 164197 . . . alleles " G T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL194178.1 samtools variation 165509 165509 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL194178.1 samtools variation 166501 166501 . . . alleles " T C"; frequencies " 0.501176470588235 0.494117647058824"; depth 425 ; unknown ; synonymous GL194178.1 samtools variation 178707 178707 . . . alleles " T G"; frequencies " 0.788321167883212 0.211678832116788"; depth 274 ; unknown ; N/A GL194178.1 samtools variation 180448 180448 . . . alleles " G A"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL194178.1 samtools variation 180482 180482 . . . alleles " A G"; frequencies " 0.387096774193548 0.612903225806452"; depth 31 ; unknown ; N/A GL194178.1 samtools variation 180656 180656 . . . alleles " G T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194178.1 samtools variation 180839 180839 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194178.1 samtools variation 201933 201933 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; non-synonymous GL194178.1 samtools variation 206933 206933 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194178.1 samtools variation 272497 272497 . . . alleles " A C"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; synonymous GL194178.1 samtools variation 283771 283771 . . . alleles " C T"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL194178.1 samtools variation 283772 283772 . . . alleles " T G"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL194181.1 samtools variation 117841 117841 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL194181.1 samtools variation 117853 117853 . . . alleles " A C"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; unknown ; N/A GL194181.1 samtools variation 117931 117931 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL194181.1 samtools variation 117959 117959 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194181.1 samtools variation 118423 118423 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL194181.1 samtools variation 118761 118761 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL194181.1 samtools variation 153634 153634 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194181.1 samtools variation 165471 165471 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194181.1 samtools variation 167528 167528 . . . alleles " C T"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL194181.1 samtools variation 169338 169338 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL194181.1 samtools variation 171060 171060 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL194181.1 samtools variation 171599 171599 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL194181.1 samtools variation 171707 171707 . . . alleles " C G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL194181.1 samtools variation 172581 172581 . . . alleles " T C"; frequencies " 0.248148148148148 0.751851851851852"; depth 270 ; unknown ; synonymous GL194181.1 samtools variation 172610 172610 . . . alleles " G C"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL194181.1 samtools variation 172777 172777 . . . alleles " C T"; frequencies " 0.560975609756098 0.414634146341463"; depth 41 ; unknown ; N/A GL194181.1 samtools variation 173362 173362 . . . alleles " C T"; frequencies " 0.794930875576037 0.205069124423963"; depth 434 ; unknown ; synonymous GL194181.1 samtools variation 173483 173483 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL194181.1 samtools variation 174365 174365 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL194181.1 samtools variation 174713 174713 . . . alleles " C T"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL194181.1 samtools variation 175899 175899 . . . alleles " C T"; frequencies " 0.73030303030303 0.26969696969697"; depth 330 ; unknown ; synonymous GL194181.1 samtools variation 176026 176026 . . . alleles " G C"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; N/A GL194181.1 samtools variation 176241 176241 . . . alleles " T C"; frequencies " 0.205882352941176 0.794117647058823"; depth 34 ; unknown ; N/A GL194181.1 samtools variation 176790 176790 . . . alleles " G T"; frequencies " 0.635416666666667 0.364583333333333"; depth 480 ; unknown ; N/A GL194181.1 samtools variation 176906 176906 . . . alleles " T C"; frequencies " 0.293075684380032 0.706924315619968"; depth 621 ; unknown ; N/A GL194181.1 samtools variation 200039 200039 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL194181.1 samtools variation 245908 245908 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194181.1 samtools variation 246146 246146 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL194181.1 samtools variation 246186 246186 . . . alleles " T A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL194181.1 samtools variation 296043 296043 . . . alleles " G A"; frequencies " 0.283018867924528 0.716981132075472"; depth 53 ; unknown ; N/A GL194182.1 samtools variation 260883 260883 . . . alleles " G A"; frequencies " 0.378378378378378 0.621621621621622"; depth 37 ; unknown ; synonymous GL194182.1 samtools variation 263673 263673 . . . alleles " T G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; non-synonymous GL194182.1 samtools variation 286425 286425 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL194182.1 samtools variation 286897 286897 . . . alleles " A G"; frequencies " 0.741176470588235 0.258823529411765"; depth 85 ; known ; N/A GL194182.1 samtools variation 287635 287635 . . . alleles " C T"; frequencies " 0.773584905660377 0.226415094339623"; depth 53 ; known ; N/A GL194190.1 samtools variation 16753 16753 . . . alleles " C T"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL194190.1 samtools variation 19548 19548 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL194190.1 samtools variation 30024 30024 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194190.1 samtools variation 30688 30688 . . . alleles " T C"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; unknown ; N/A GL194190.1 samtools variation 31202 31202 . . . alleles " G T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL194190.1 samtools variation 53162 53162 . . . alleles " T C"; frequencies " 0.304054054054054 0.695945945945946"; depth 148 ; known ; N/A GL194196.1 samtools variation 11902 11902 . . . alleles " T C"; frequencies " 0.449477351916376 0.550522648083624"; depth 287 ; known ; N/A GL194197.1 samtools variation 98973 98973 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL194197.1 samtools variation 106921 106921 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 42 ; unknown ; N/A GL194197.1 samtools variation 110986 110986 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL194197.1 samtools variation 184345 184345 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL194197.1 samtools variation 200014 200014 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL194197.1 samtools variation 205644 205644 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; known ; N/A GL194197.1 samtools variation 207997 207997 . . . alleles " T C"; frequencies " 0.328813559322034 0.671186440677966"; depth 295 ; known ; N/A GL194197.1 samtools variation 208150 208150 . . . alleles " G A"; frequencies " 0.740659340659341 0.259340659340659"; depth 910 ; unknown ; N/A GL194197.1 samtools variation 208474 208474 . . . alleles " T C"; frequencies " 0.378466557911909 0.621533442088091"; depth 613 ; known ; N/A GL194197.1 samtools variation 208582 208582 . . . alleles " G A"; frequencies " 0.406382978723404 0.593617021276596"; depth 470 ; known ; N/A GL194197.1 samtools variation 208641 208641 . . . alleles " A G"; frequencies " 0.460043196544276 0.539956803455723"; depth 463 ; known ; N/A GL194197.1 samtools variation 208660 208660 . . . alleles " T A"; frequencies " 0.509234828496042 0.490765171503958"; depth 379 ; known ; N/A GL194197.1 samtools variation 208709 208709 . . . alleles " G C"; frequencies " 0.409495548961424 0.590504451038576"; depth 337 ; known ; N/A GL194197.1 samtools variation 208898 208898 . . . alleles " A G"; frequencies " 0.702928870292887 0.297071129707113"; depth 478 ; known ; N/A GL194197.1 samtools variation 209078 209078 . . . alleles " T C"; frequencies " 0.770454545454546 0.229545454545455"; depth 440 ; known ; N/A GL194197.1 samtools variation 209273 209273 . . . alleles " G C"; frequencies " 0.558394160583942 0.441605839416058"; depth 548 ; known ; N/A GL194197.1 samtools variation 209571 209571 . . . alleles " A G"; frequencies " 0.575 0.425"; depth 680 ; known ; N/A GL194197.1 samtools variation 210099 210099 . . . alleles " A T"; frequencies " 0.512096774193548 0.487903225806452"; depth 496 ; known ; N/A GL194197.1 samtools variation 210394 210394 . . . alleles " C T"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL194197.1 samtools variation 211403 211403 . . . alleles " G A"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; known ; N/A GL194197.1 samtools variation 213175 213175 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL194197.1 samtools variation 213790 213790 . . . alleles " C T"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; unknown ; N/A GL194197.1 samtools variation 213887 213887 . . . alleles " G A"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL194197.1 samtools variation 227743 227743 . . . alleles " G A"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; unknown ; synonymous GL194197.1 samtools variation 229520 229520 . . . alleles " T C"; frequencies " 0.73469387755102 0.26530612244898"; depth 49 ; unknown ; non-synonymous GL194198.1 samtools variation 207152 207152 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL194198.1 samtools variation 208908 208908 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL194201.1 samtools variation 166504 166504 . . . alleles " G C"; frequencies " 0.705607476635514 0.294392523364486"; depth 214 ; unknown ; N/A GL194201.1 samtools variation 166975 166975 . . . alleles " A G"; frequencies " 0.497142857142857 0.502857142857143"; depth 175 ; unknown ; N/A GL194201.1 samtools variation 166996 166996 . . . alleles " G A"; frequencies " 0.352941176470588 0.647058823529412"; depth 221 ; unknown ; N/A GL194201.1 samtools variation 167014 167014 . . . alleles " T C"; frequencies " 0.669603524229075 0.330396475770925"; depth 227 ; unknown ; N/A GL194201.1 samtools variation 168694 168694 . . . alleles " C A"; frequencies " 0.449438202247191 0.539325842696629"; depth 178 ; unknown ; non-synonymous GL194201.1 samtools variation 286350 286350 . . . alleles " C G"; frequencies " 0.573170731707317 0.420731707317073"; depth 164 ; unknown ; synonymous GL194201.1 samtools variation 293559 293559 . . . alleles " G A"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; non-synonymous GL194201.1 samtools variation 295937 295937 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 112 ; unknown ; N/A GL194201.1 samtools variation 297205 297205 . . . alleles " C T"; frequencies " 0.36697247706422 0.63302752293578"; depth 109 ; unknown ; N/A GL194201.1 samtools variation 298925 298925 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL194204.1 samtools variation 77867 77867 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL194204.1 samtools variation 77973 77973 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL194204.1 samtools variation 78524 78524 . . . alleles " T C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL194204.1 samtools variation 83002 83002 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL194204.1 samtools variation 84951 84951 . . . alleles " A C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL194204.1 samtools variation 84953 84953 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194204.1 samtools variation 95195 95195 . . . alleles " A C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL194204.1 samtools variation 95367 95367 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL194204.1 samtools variation 95373 95373 . . . alleles " C A"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL194204.1 samtools variation 95541 95541 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 88 ; unknown ; N/A GL194204.1 samtools variation 95780 95780 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL194204.1 samtools variation 104821 104821 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL194204.1 samtools variation 110900 110900 . . . alleles " C A"; frequencies " 0.646067415730337 0.353932584269663"; depth 178 ; unknown ; N/A GL194204.1 samtools variation 119309 119309 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL194204.1 samtools variation 122067 122067 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194204.1 samtools variation 131409 131409 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL194204.1 samtools variation 143534 143534 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL194204.1 samtools variation 145621 145621 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 39 ; unknown ; N/A GL194204.1 samtools variation 145780 145780 . . . alleles " G A"; frequencies " 0.560975609756098 0.414634146341463"; depth 41 ; unknown ; N/A GL194204.1 samtools variation 145806 145806 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 44 ; unknown ; N/A GL194204.1 samtools variation 146067 146067 . . . alleles " T C"; frequencies " 0.720930232558139 0.27906976744186"; depth 43 ; unknown ; N/A GL194206.1 samtools variation 1520 1520 . . . alleles " A G"; frequencies " 0.754578754578755 0.245421245421245"; depth 819 ; unknown ; synonymous GL194206.1 samtools variation 9928 9928 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL194206.1 samtools variation 65875 65875 . . . alleles " A G"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; N/A GL194206.1 samtools variation 65877 65877 . . . alleles " T G"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; N/A GL194206.1 samtools variation 123177 123177 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194206.1 samtools variation 125346 125346 . . . alleles " G C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL194206.1 samtools variation 128329 128329 . . . alleles " G A"; frequencies " 0.759493670886076 0.240506329113924"; depth 158 ; unknown ; N/A GL194206.1 samtools variation 129762 129762 . . . alleles " T C"; frequencies " 0.418604651162791 0.581395348837209"; depth 43 ; unknown ; N/A GL194206.1 samtools variation 129872 129872 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 33 ; unknown ; N/A GL194206.1 samtools variation 156272 156272 . . . alleles " A G"; frequencies " 0.258064516129032 0.741935483870968"; depth 62 ; known ; N/A GL194206.1 samtools variation 186882 186882 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; known ; N/A GL194206.1 samtools variation 228143 228143 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; known ; N/A GL194206.1 samtools variation 285760 285760 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL194213.1 samtools variation 1558 1558 . . . alleles " G A"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL194213.1 samtools variation 1656 1656 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL194213.1 samtools variation 1674 1674 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL194213.1 samtools variation 1707 1707 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; N/A GL194213.1 samtools variation 1732 1732 . . . alleles " G A"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; unknown ; N/A GL194213.1 samtools variation 1802 1802 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 26 ; unknown ; N/A GL194213.1 samtools variation 5159 5159 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL194213.1 samtools variation 14412 14412 . . . alleles " C A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; non-synonymous GL194213.1 samtools variation 29956 29956 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL194213.1 samtools variation 31750 31750 . . . alleles " T G"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; known ; N/A GL194213.1 samtools variation 235091 235091 . . . alleles " T C"; frequencies " 0.48 0.52"; depth 25 ; known ; N/A GL194213.1 samtools variation 235130 235130 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; N/A GL194213.1 samtools variation 235156 235156 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; known ; N/A GL194213.1 samtools variation 235391 235391 . . . alleles " C T"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; known ; N/A GL194213.1 samtools variation 236985 236985 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL194213.1 samtools variation 237076 237076 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL194213.1 samtools variation 237373 237373 . . . alleles " A G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL194213.1 samtools variation 237414 237414 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL194213.1 samtools variation 284596 284596 . . . alleles " G A"; frequencies " 0.520833333333333 0.479166666666667"; depth 48 ; known ; N/A GL194213.1 samtools variation 284698 284698 . . . alleles " G A"; frequencies " 0.601941747572815 0.398058252427184"; depth 103 ; known ; N/A GL194214.1 samtools variation 118146 118146 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL194214.1 samtools variation 120076 120076 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL194214.1 samtools variation 124395 124395 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL194214.1 samtools variation 125061 125061 . . . alleles " A C"; frequencies " 0.758620689655172 0.241379310344828"; depth 174 ; unknown ; N/A GL194214.1 samtools variation 125082 125082 . . . alleles " T G"; frequencies " 0.767441860465116 0.232558139534884"; depth 172 ; unknown ; N/A GL194214.1 samtools variation 125743 125743 . . . alleles " T C"; frequencies " 0.78 0.22"; depth 50 ; unknown ; N/A GL194214.1 samtools variation 128689 128689 . . . alleles " T C"; frequencies " 0.580246913580247 0.419753086419753"; depth 81 ; known ; N/A GL194214.1 samtools variation 129417 129417 . . . alleles " A G"; frequencies " 0.51496062992126 0.48503937007874"; depth 1270 ; known ; synonymous GL194214.1 samtools variation 155984 155984 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 46 ; known ; N/A GL194214.1 samtools variation 158241 158241 . . . alleles " T C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL194214.1 samtools variation 162181 162181 . . . alleles " T C"; frequencies " 0.346938775510204 0.653061224489796"; depth 49 ; known ; N/A GL194214.1 samtools variation 162453 162453 . . . alleles " G C"; frequencies " 0.491803278688525 0.508196721311475"; depth 61 ; known ; N/A GL194214.1 samtools variation 162956 162956 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL194214.1 samtools variation 163430 163430 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; known ; N/A GL194214.1 samtools variation 163505 163505 . . . alleles " T A"; frequencies " 0.661538461538462 0.338461538461538"; depth 65 ; known ; N/A GL194214.1 samtools variation 163514 163514 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 57 ; known ; N/A GL194214.1 samtools variation 163578 163578 . . . alleles " C A"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; known ; N/A GL194214.1 samtools variation 163636 163636 . . . alleles " C A"; frequencies " 0.266666666666667 0.733333333333333"; depth 30 ; known ; N/A GL194214.1 samtools variation 163750 163750 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL194214.1 samtools variation 164645 164645 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; N/A GL194214.1 samtools variation 164943 164943 . . . alleles " T C"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; known ; N/A GL194214.1 samtools variation 209588 209588 . . . alleles " A G"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; non-synonymous GL194214.1 samtools variation 223789 223789 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; non-synonymous GL194214.1 samtools variation 245441 245441 . . . alleles " A G"; frequencies " 0.353846153846154 0.646153846153846"; depth 65 ; known ; synonymous GL194214.1 samtools variation 247944 247944 . . . alleles " A G"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; unknown ; synonymous GL194214.1 samtools variation 248955 248955 . . . alleles " G A"; frequencies " 0.547619047619048 0.452380952380952"; depth 42 ; unknown ; non-synonymous GL194214.1 samtools variation 248996 248996 . . . alleles " T C"; frequencies " 0.257142857142857 0.742857142857143"; depth 35 ; unknown ; N/A GL194214.1 samtools variation 249027 249027 . . . alleles " G A"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; unknown ; N/A GL194214.1 samtools variation 249055 249055 . . . alleles " A C"; frequencies " 0.439024390243902 0.560975609756098"; depth 41 ; unknown ; N/A GL194214.1 samtools variation 250700 250700 . . . alleles " T A"; frequencies " 0.568965517241379 0.431034482758621"; depth 58 ; unknown ; N/A GL194214.1 samtools variation 271115 271115 . . . alleles " T C"; frequencies " 0.688524590163934 0.311475409836066"; depth 61 ; unknown ; synonymous GL194214.1 samtools variation 286323 286323 . . . alleles " T C"; frequencies " 0.224806201550388 0.775193798449612"; depth 129 ; unknown ; synonymous GL194214.1 samtools variation 291007 291007 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL194214.1 samtools variation 292881 292881 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL194215.1 samtools variation 115668 115668 . . . alleles " G C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL194215.1 samtools variation 116672 116672 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194215.1 samtools variation 142024 142024 . . . alleles " C T"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; unknown ; N/A GL194215.1 samtools variation 174873 174873 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL194216.1 samtools variation 3741 3741 . . . alleles " G A"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; known ; synonymous GL194216.1 samtools variation 19072 19072 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; synonymous GL194219.1 samtools variation 203489 203489 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; non-synonymous GL194224.1 samtools variation 121069 121069 . . . alleles " T C"; frequencies " 0.385714285714286 0.614285714285714"; depth 280 ; known ; synonymous GL194224.1 samtools variation 121410 121410 . . . alleles " G A"; frequencies " 0.701754385964912 0.298245614035088"; depth 114 ; unknown ; N/A GL194225.1 samtools variation 19053 19053 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; synonymous GL194225.1 samtools variation 31320 31320 . . . alleles " A G"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; non-synonymous GL194225.1 samtools variation 33421 33421 . . . alleles " A G"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; unknown ; synonymous GL194225.1 samtools variation 36151 36151 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; unknown ; synonymous GL194225.1 samtools variation 47761 47761 . . . alleles " A G"; frequencies " 0.567164179104478 0.432835820895522"; depth 67 ; unknown ; N/A GL194225.1 samtools variation 47762 47762 . . . alleles " T A"; frequencies " 0.567164179104478 0.432835820895522"; depth 67 ; unknown ; N/A GL194225.1 samtools variation 50599 50599 . . . alleles " G A"; frequencies " 0.711864406779661 0.288135593220339"; depth 59 ; unknown ; N/A GL194225.1 samtools variation 50647 50647 . . . alleles " T C"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL194225.1 samtools variation 51273 51273 . . . alleles " C T"; frequencies " 0.608108108108108 0.391891891891892"; depth 74 ; unknown ; N/A GL194225.1 samtools variation 53039 53039 . . . alleles " T G"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL194225.1 samtools variation 53041 53041 . . . alleles " A C"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL194225.1 samtools variation 53112 53112 . . . alleles " C T"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL194225.1 samtools variation 55337 55337 . . . alleles " C T"; frequencies " 0.234567901234568 0.765432098765432"; depth 81 ; unknown ; N/A GL194225.1 samtools variation 57317 57317 . . . alleles " C T"; frequencies " 0.766393442622951 0.233606557377049"; depth 244 ; unknown ; non-synonymous GL194228.1 samtools variation 103811 103811 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 72 ; known ; N/A GL194228.1 samtools variation 103960 103960 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 66 ; unknown ; N/A GL194228.1 samtools variation 103987 103987 . . . alleles " T C"; frequencies " 0.72 0.28"; depth 50 ; known ; N/A GL194228.1 samtools variation 105141 105141 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL194228.1 samtools variation 105990 105990 . . . alleles " G A"; frequencies " 0.522727272727273 0.477272727272727"; depth 44 ; unknown ; N/A GL194228.1 samtools variation 116629 116629 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 55 ; known ; N/A GL194232.1 samtools variation 32708 32708 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; non-synonymous GL194232.1 samtools variation 301058 301058 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL194235.1 samtools variation 282194 282194 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL194235.1 samtools variation 282801 282801 . . . alleles " G C"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; known ; N/A GL194235.1 samtools variation 293695 293695 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194235.1 samtools variation 296057 296057 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL194235.1 samtools variation 296671 296671 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194235.1 samtools variation 299595 299595 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL194239.1 samtools variation 188667 188667 . . . alleles " C A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL194240.1 samtools variation 71033 71033 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194243.1 samtools variation 50328 50328 . . . alleles " C T"; frequencies " 0.710144927536232 0.289855072463768"; depth 138 ; unknown ; N/A GL194243.1 samtools variation 50511 50511 . . . alleles " T G"; frequencies " 0.572727272727273 0.427272727272727"; depth 110 ; unknown ; N/A GL194243.1 samtools variation 50728 50728 . . . alleles " C A"; frequencies " 0.793774319066148 0.206225680933852"; depth 257 ; unknown ; N/A GL194243.1 samtools variation 53010 53010 . . . alleles " T C"; frequencies " 0.721003134796238 0.278996865203762"; depth 319 ; unknown ; synonymous GL194243.1 samtools variation 58357 58357 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL194243.1 samtools variation 58617 58617 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL194243.1 samtools variation 92238 92238 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL194243.1 samtools variation 149793 149793 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194243.1 samtools variation 150737 150737 . . . alleles " G A"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; unknown ; N/A GL194243.1 samtools variation 294018 294018 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; known ; N/A GL194250.1 samtools variation 137410 137410 . . . alleles " A T"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; unknown ; N/A GL194250.1 samtools variation 140793 140793 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL194250.1 samtools variation 142126 142126 . . . alleles " G T"; frequencies " 0.78125 0.21875"; depth 128 ; unknown ; synonymous GL194250.1 samtools variation 148380 148380 . . . alleles " T A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL194250.1 samtools variation 148493 148493 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194251.1 samtools variation 128045 128045 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194251.1 samtools variation 148273 148273 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; unknown ; N/A GL194251.1 samtools variation 148969 148969 . . . alleles " T G"; frequencies " 0.783333333333333 0.216666666666667"; depth 60 ; unknown ; N/A GL194251.1 samtools variation 149310 149310 . . . alleles " A G"; frequencies " 0.425287356321839 0.574712643678161"; depth 87 ; unknown ; N/A GL194251.1 samtools variation 178674 178674 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 35 ; known ; N/A GL194253.1 samtools variation 103785 103785 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 60 ; known ; N/A GL194253.1 samtools variation 106305 106305 . . . alleles " T C"; frequencies " 0.292517006802721 0.707482993197279"; depth 147 ; known ; N/A GL194253.1 samtools variation 106375 106375 . . . alleles " G A"; frequencies " 0.323232323232323 0.676767676767677"; depth 99 ; unknown ; N/A GL194253.1 samtools variation 106627 106627 . . . alleles " C T"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL194253.1 samtools variation 107404 107404 . . . alleles " A G"; frequencies " 0.254237288135593 0.745762711864407"; depth 59 ; known ; N/A GL194253.1 samtools variation 109353 109353 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL194253.1 samtools variation 122559 122559 . . . alleles " G A"; frequencies " 0.552631578947368 0.421052631578947"; depth 38 ; known ; synonymous GL194253.1 samtools variation 160412 160412 . . . alleles " T G"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; known ; synonymous GL194256.1 samtools variation 6584 6584 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL194256.1 samtools variation 28470 28470 . . . alleles " T C"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; synonymous GL194256.1 samtools variation 29987 29987 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL194256.1 samtools variation 31171 31171 . . . alleles " C A"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; N/A GL194256.1 samtools variation 31405 31405 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL194256.1 samtools variation 37104 37104 . . . alleles " T C"; frequencies " 0.603174603174603 0.396825396825397"; depth 63 ; unknown ; non-synonymous GL194256.1 samtools variation 84322 84322 . . . alleles " G A"; frequencies " 0.621951219512195 0.378048780487805"; depth 164 ; unknown ; N/A GL194256.1 samtools variation 88018 88018 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 90 ; unknown ; synonymous GL194256.1 samtools variation 88314 88314 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 99 ; unknown ; synonymous GL194256.1 samtools variation 99334 99334 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL194256.1 samtools variation 100113 100113 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194256.1 samtools variation 101586 101586 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL194256.1 samtools variation 101607 101607 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL194256.1 samtools variation 102957 102957 . . . alleles " T C"; frequencies " 0.675438596491228 0.324561403508772"; depth 114 ; unknown ; N/A GL194256.1 samtools variation 120268 120268 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL194256.1 samtools variation 123065 123065 . . . alleles " T C"; frequencies " 0.568807339449541 0.431192660550459"; depth 109 ; unknown ; synonymous GL194256.1 samtools variation 143914 143914 . . . alleles " G A"; frequencies " 0.792452830188679 0.207547169811321"; depth 53 ; unknown ; N/A GL194256.1 samtools variation 206458 206458 . . . alleles " T A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL194256.1 samtools variation 206465 206465 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL194256.1 samtools variation 206526 206526 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL194256.1 samtools variation 252799 252799 . . . alleles " G C"; frequencies " 0.684210526315789 0.315789473684211"; depth 95 ; unknown ; synonymous GL194256.1 samtools variation 253897 253897 . . . alleles " G A"; frequencies " 0.74468085106383 0.234042553191489"; depth 47 ; unknown ; N/A GL194256.1 samtools variation 255274 255274 . . . alleles " T C"; frequencies " 0.481012658227848 0.518987341772152"; depth 79 ; unknown ; N/A GL194256.1 samtools variation 255307 255307 . . . alleles " T A"; frequencies " 0.65 0.35"; depth 60 ; unknown ; N/A GL194256.1 samtools variation 255980 255980 . . . alleles " A T"; frequencies " 0.743455497382199 0.256544502617801"; depth 191 ; unknown ; N/A GL194256.1 samtools variation 256059 256059 . . . alleles " G A"; frequencies " 0.720588235294118 0.279411764705882"; depth 68 ; unknown ; N/A GL194256.1 samtools variation 256617 256617 . . . alleles " C T"; frequencies " 0.36 0.64"; depth 75 ; unknown ; N/A GL194256.1 samtools variation 257133 257133 . . . alleles " C T"; frequencies " 0.315789473684211 0.684210526315789"; depth 133 ; unknown ; N/A GL194262.1 samtools variation 15097 15097 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL194262.1 samtools variation 15664 15664 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL194262.1 samtools variation 15834 15834 . . . alleles " G C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL194262.1 samtools variation 192017 192017 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194262.1 samtools variation 229834 229834 . . . alleles " C T"; frequencies " 0.591836734693878 0.408163265306122"; depth 49 ; unknown ; non-synonymous GL194262.1 samtools variation 233212 233212 . . . alleles " G A"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL194262.1 samtools variation 238801 238801 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL194265.1 samtools variation 279176 279176 . . . alleles " C G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194267.1 samtools variation 258123 258123 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL194270.1 samtools variation 124771 124771 . . . alleles " C T"; frequencies " 0.268292682926829 0.731707317073171"; depth 123 ; unknown ; N/A GL194270.1 samtools variation 125162 125162 . . . alleles " A T"; frequencies " 0.797153024911032 0.202846975088968"; depth 281 ; unknown ; N/A GL194270.1 samtools variation 126926 126926 . . . alleles " A G"; frequencies " 0.217391304347826 0.782608695652174"; depth 46 ; unknown ; N/A GL194270.1 samtools variation 155736 155736 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL194271.1 samtools variation 33193 33193 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 44 ; unknown ; non-synonymous GL194271.1 samtools variation 42166 42166 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL194271.1 samtools variation 46482 46482 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 48 ; unknown ; N/A GL194271.1 samtools variation 49975 49975 . . . alleles " T C"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; synonymous GL194271.1 samtools variation 57914 57914 . . . alleles " A T"; frequencies " 0.575 0.425"; depth 80 ; unknown ; synonymous GL194271.1 samtools variation 61936 61936 . . . alleles " T C"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; N/A GL194271.1 samtools variation 150961 150961 . . . alleles " G A"; frequencies " 0.796296296296296 0.203703703703704"; depth 54 ; unknown ; synonymous GL194271.1 samtools variation 211114 211114 . . . alleles " A C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL194275.1 samtools variation 43066 43066 . . . alleles " G A"; frequencies " 0.514044943820225 0.485955056179775"; depth 356 ; known ; N/A GL194275.1 samtools variation 45043 45043 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 92 ; known ; N/A GL194275.1 samtools variation 48952 48952 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL194275.1 samtools variation 92661 92661 . . . alleles " C T"; frequencies " 0.413793103448276 0.586206896551724"; depth 58 ; known ; N/A GL194275.1 samtools variation 231586 231586 . . . alleles " T C"; frequencies " 0.341772151898734 0.658227848101266"; depth 79 ; known ; synonymous GL194275.1 samtools variation 231619 231619 . . . alleles " G A"; frequencies " 0.579545454545455 0.409090909090909"; depth 88 ; known ; synonymous GL194275.1 samtools variation 236205 236205 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL194275.1 samtools variation 236336 236336 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL194275.1 samtools variation 237876 237876 . . . alleles " C T"; frequencies " 0.217898832684825 0.782101167315175"; depth 257 ; known ; N/A GL194275.1 samtools variation 237973 237973 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; known ; N/A GL194275.1 samtools variation 238928 238928 . . . alleles " T C"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; known ; N/A GL194275.1 samtools variation 239189 239189 . . . alleles " G C"; frequencies " 0.264423076923077 0.735576923076923"; depth 208 ; known ; N/A GL194275.1 samtools variation 239773 239773 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL194275.1 samtools variation 240747 240747 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL194275.1 samtools variation 244043 244043 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL194275.1 samtools variation 246157 246157 . . . alleles " C A"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL194275.1 samtools variation 246280 246280 . . . alleles " T C"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; known ; N/A GL194275.1 samtools variation 246504 246504 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL194275.1 samtools variation 278693 278693 . . . alleles " G A"; frequencies " 0.75531914893617 0.24468085106383"; depth 94 ; unknown ; N/A GL194275.1 samtools variation 283155 283155 . . . alleles " A G"; frequencies " 0.761538461538461 0.238461538461538"; depth 260 ; unknown ; N/A GL194275.1 samtools variation 283158 283158 . . . alleles " C G"; frequencies " 0.540540540540541 0.459459459459459"; depth 259 ; unknown ; N/A GL194275.1 samtools variation 283180 283180 . . . alleles " G C"; frequencies " 0.39344262295082 0.60655737704918"; depth 244 ; unknown ; N/A GL194275.1 samtools variation 283213 283213 . . . alleles " G T"; frequencies " 0.775862068965517 0.224137931034483"; depth 290 ; unknown ; N/A GL194275.1 samtools variation 284044 284044 . . . alleles " C A"; frequencies " 0.701298701298701 0.298701298701299"; depth 154 ; unknown ; N/A GL194275.1 samtools variation 284359 284359 . . . alleles " A G"; frequencies " 0.658653846153846 0.341346153846154"; depth 208 ; known ; N/A GL194275.1 samtools variation 284519 284519 . . . alleles " A G"; frequencies " 0.591397849462366 0.408602150537634"; depth 93 ; unknown ; N/A GL194275.1 samtools variation 284598 284598 . . . alleles " T C"; frequencies " 0.613207547169811 0.386792452830189"; depth 106 ; unknown ; N/A GL194275.1 samtools variation 285360 285360 . . . alleles " C T"; frequencies " 0.763239875389408 0.236760124610592"; depth 321 ; unknown ; N/A GL194275.1 samtools variation 285529 285529 . . . alleles " G C"; frequencies " 0.554027504911591 0.445972495088409"; depth 509 ; known ; N/A GL194275.1 samtools variation 285775 285775 . . . alleles " C T"; frequencies " 0.774390243902439 0.225609756097561"; depth 328 ; unknown ; N/A GL194275.1 samtools variation 287341 287341 . . . alleles " C T"; frequencies " 0.679012345679012 0.320987654320988"; depth 243 ; known ; synonymous GL194275.1 samtools variation 287482 287482 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL194275.1 samtools variation 288147 288147 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL194278.1 samtools variation 62475 62475 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 33 ; known ; synonymous GL194278.1 samtools variation 62481 62481 . . . alleles " A G"; frequencies " 0.323529411764706 0.676470588235294"; depth 34 ; known ; synonymous GL194278.1 samtools variation 62739 62739 . . . alleles " G A"; frequencies " 0.361111111111111 0.638888888888889"; depth 36 ; known ; synonymous GL194278.1 samtools variation 67503 67503 . . . alleles " G A"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; known ; N/A GL194278.1 samtools variation 69273 69273 . . . alleles " G T"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; known ; N/A GL194278.1 samtools variation 72959 72959 . . . alleles " A T"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; known ; N/A GL194280.1 samtools variation 27744 27744 . . . alleles " T C"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL194280.1 samtools variation 221346 221346 . . . alleles " C G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194282.1 samtools variation 259789 259789 . . . alleles " T C"; frequencies " 0.53072625698324 0.46927374301676"; depth 716 ; unknown ; synonymous GL194282.1 samtools variation 266324 266324 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL194283.1 samtools variation 862 862 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194283.1 samtools variation 2201 2201 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194283.1 samtools variation 6110 6110 . . . alleles " A G"; frequencies " 0.37410071942446 0.62589928057554"; depth 417 ; unknown ; N/A GL194283.1 samtools variation 6303 6303 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL194283.1 samtools variation 7444 7444 . . . alleles " C T"; frequencies " 0.573529411764706 0.426470588235294"; depth 136 ; unknown ; N/A GL194283.1 samtools variation 7830 7830 . . . alleles " A C"; frequencies " 0.443037974683544 0.556962025316456"; depth 158 ; unknown ; N/A GL194283.1 samtools variation 7833 7833 . . . alleles " C T"; frequencies " 0.395061728395062 0.604938271604938"; depth 162 ; unknown ; N/A GL194283.1 samtools variation 13387 13387 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 38 ; unknown ; N/A GL194283.1 samtools variation 15165 15165 . . . alleles " A G"; frequencies " 0.410714285714286 0.589285714285714"; depth 56 ; unknown ; N/A GL194283.1 samtools variation 15202 15202 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 44 ; unknown ; N/A GL194285.1 samtools variation 2707 2707 . . . alleles " C T"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL194285.1 samtools variation 3477 3477 . . . alleles " G A"; frequencies " 0.612746795981988 0.387253204018012"; depth 2887 ; unknown ; N/A GL194285.1 samtools variation 5340 5340 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 54 ; unknown ; N/A GL194285.1 samtools variation 5558 5558 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL194285.1 samtools variation 5677 5677 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194285.1 samtools variation 6165 6165 . . . alleles " G A"; frequencies " 0.516252390057361 0.483747609942639"; depth 523 ; unknown ; N/A GL194285.1 samtools variation 6596 6596 . . . alleles " T C"; frequencies " 0.408360128617363 0.591639871382637"; depth 311 ; unknown ; N/A GL194285.1 samtools variation 6738 6738 . . . alleles " C G"; frequencies " 0.479310344827586 0.520689655172414"; depth 290 ; unknown ; N/A GL194285.1 samtools variation 6838 6838 . . . alleles " G A"; frequencies " 0.546558704453441 0.453441295546559"; depth 247 ; unknown ; N/A GL194285.1 samtools variation 7180 7180 . . . alleles " T C"; frequencies " 0.476851851851852 0.523148148148148"; depth 432 ; unknown ; synonymous GL194285.1 samtools variation 16315 16315 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194285.1 samtools variation 23333 23333 . . . alleles " T C"; frequencies " 0.492063492063492 0.507936507936508"; depth 63 ; unknown ; N/A GL194285.1 samtools variation 23440 23440 . . . alleles " G A"; frequencies " 0.448275862068966 0.551724137931034"; depth 87 ; unknown ; N/A GL194285.1 samtools variation 25781 25781 . . . alleles " G T"; frequencies " 0.695 0.305"; depth 200 ; unknown ; N/A GL194285.1 samtools variation 25804 25804 . . . alleles " G A"; frequencies " 0.715555555555556 0.284444444444444"; depth 225 ; unknown ; N/A GL194285.1 samtools variation 26264 26264 . . . alleles " T C"; frequencies " 0.735849056603774 0.264150943396226"; depth 106 ; unknown ; N/A GL194285.1 samtools variation 36947 36947 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 65 ; unknown ; N/A GL194285.1 samtools variation 40015 40015 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 27 ; unknown ; N/A GL194285.1 samtools variation 40181 40181 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL194285.1 samtools variation 40403 40403 . . . alleles " A G"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL194285.1 samtools variation 56648 56648 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL194285.1 samtools variation 56970 56970 . . . alleles " A T"; frequencies " 0.790035587188612 0.209964412811388"; depth 281 ; unknown ; N/A GL194285.1 samtools variation 70490 70490 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; synonymous GL194285.1 samtools variation 113479 113479 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 74 ; unknown ; N/A GL194285.1 samtools variation 113538 113538 . . . alleles " C T"; frequencies " 0.71875 0.28125"; depth 64 ; unknown ; N/A GL194285.1 samtools variation 130623 130623 . . . alleles " C T"; frequencies " 0.627906976744186 0.372093023255814"; depth 43 ; unknown ; N/A GL194285.1 samtools variation 148304 148304 . . . alleles " G A"; frequencies " 0.488888888888889 0.511111111111111"; depth 45 ; unknown ; N/A GL194285.1 samtools variation 148385 148385 . . . alleles " A G"; frequencies " 0.629032258064516 0.370967741935484"; depth 62 ; unknown ; N/A GL194285.1 samtools variation 151462 151462 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 48 ; unknown ; N/A GL194286.1 samtools variation 216988 216988 . . . alleles " G T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL194287.1 samtools variation 57849 57849 . . . alleles " T C"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; known ; N/A GL194287.1 samtools variation 57911 57911 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; known ; N/A GL194287.1 samtools variation 160491 160491 . . . alleles " T C"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; unknown ; N/A GL194287.1 samtools variation 168859 168859 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194287.1 samtools variation 193967 193967 . . . alleles " A C"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; N/A GL194287.1 samtools variation 239602 239602 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL194287.1 samtools variation 242295 242295 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL194296.1 samtools variation 21697 21697 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL194296.1 samtools variation 30752 30752 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL194296.1 samtools variation 31506 31506 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 60 ; unknown ; non-synonymous GL194296.1 samtools variation 31940 31940 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; synonymous GL194296.1 samtools variation 32306 32306 . . . alleles " T A"; frequencies " 0.461538461538462 0.538461538461538"; depth 78 ; known ; synonymous GL194296.1 samtools variation 32750 32750 . . . alleles " C T"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; synonymous GL194297.1 samtools variation 174430 174430 . . . alleles " T C"; frequencies " 0.661971830985915 0.338028169014085"; depth 71 ; unknown ; N/A GL194297.1 samtools variation 176281 176281 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL194300.1 samtools variation 1494 1494 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL194300.1 samtools variation 9641 9641 . . . alleles " A G"; frequencies " 0.63768115942029 0.36231884057971"; depth 69 ; unknown ; N/A GL194300.1 samtools variation 9723 9723 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 52 ; unknown ; N/A GL194300.1 samtools variation 9744 9744 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 102 ; unknown ; N/A GL194300.1 samtools variation 11140 11140 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL194300.1 samtools variation 13400 13400 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL194300.1 samtools variation 55994 55994 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL194300.1 samtools variation 87709 87709 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 56 ; known ; synonymous GL194300.1 samtools variation 164566 164566 . . . alleles " T C"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; known ; N/A GL194301.1 samtools variation 254580 254580 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL194302.1 samtools variation 257310 257310 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL194302.1 samtools variation 273365 273365 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 56 ; known ; synonymous GL194302.1 samtools variation 275778 275778 . . . alleles " G A"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; synonymous GL194303.1 samtools variation 37070 37070 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL194303.1 samtools variation 71661 71661 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL194303.1 samtools variation 124128 124128 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 110 ; unknown ; N/A GL194306.1 samtools variation 163258 163258 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; synonymous GL194306.1 samtools variation 229820 229820 . . . alleles " T A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; synonymous GL194306.1 samtools variation 229862 229862 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; synonymous GL194306.1 samtools variation 230612 230612 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; non-synonymous GL194306.1 samtools variation 248892 248892 . . . alleles " G A"; frequencies " 0.297297297297297 0.702702702702703"; depth 37 ; known ; synonymous GL194306.1 samtools variation 258773 258773 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL194306.1 samtools variation 264105 264105 . . . alleles " T A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; known ; N/A GL194310.1 samtools variation 108716 108716 . . . alleles " G C"; frequencies " 0.508264462809917 0.491735537190083"; depth 242 ; known ; N/A GL194310.1 samtools variation 109301 109301 . . . alleles " G A"; frequencies " 0.695402298850575 0.304597701149425"; depth 348 ; unknown ; N/A GL194310.1 samtools variation 109403 109403 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 153 ; unknown ; N/A GL194310.1 samtools variation 109607 109607 . . . alleles " G A"; frequencies " 0.659770114942529 0.340229885057471"; depth 435 ; unknown ; N/A GL194310.1 samtools variation 110697 110697 . . . alleles " A T"; frequencies " 0.744510978043912 0.255489021956088"; depth 501 ; unknown ; N/A GL194316.1 samtools variation 43520 43520 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL194316.1 samtools variation 88696 88696 . . . alleles " C T"; frequencies " 0.639204545454545 0.360795454545455"; depth 352 ; unknown ; N/A GL194316.1 samtools variation 88819 88819 . . . alleles " A T"; frequencies " 0.587301587301587 0.412698412698413"; depth 378 ; unknown ; N/A GL194316.1 samtools variation 88915 88915 . . . alleles " G A"; frequencies " 0.644736842105263 0.355263157894737"; depth 456 ; unknown ; N/A GL194316.1 samtools variation 102220 102220 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL194317.1 samtools variation 4376 4376 . . . alleles " C G"; frequencies " 0.742316784869976 0.257683215130024"; depth 423 ; unknown ; N/A GL194317.1 samtools variation 9406 9406 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL194317.1 samtools variation 14985 14985 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194317.1 samtools variation 30467 30467 . . . alleles " G A"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; non-synonymous GL194317.1 samtools variation 39600 39600 . . . alleles " A G"; frequencies " 0.775757575757576 0.224242424242424"; depth 165 ; unknown ; N/A GL194317.1 samtools variation 39668 39668 . . . alleles " A G"; frequencies " 0.719653179190751 0.280346820809249"; depth 346 ; unknown ; N/A GL194317.1 samtools variation 39970 39970 . . . alleles " C T"; frequencies " 0.766871165644172 0.233128834355828"; depth 163 ; unknown ; N/A GL194317.1 samtools variation 40205 40205 . . . alleles " C T"; frequencies " 0.738095238095238 0.261904761904762"; depth 84 ; unknown ; N/A GL194317.1 samtools variation 41560 41560 . . . alleles " G C"; frequencies " 0.711538461538462 0.288461538461538"; depth 52 ; unknown ; N/A GL194317.1 samtools variation 41868 41868 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL194317.1 samtools variation 42379 42379 . . . alleles " T G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL194317.1 samtools variation 42703 42703 . . . alleles " G A"; frequencies " 0.787610619469027 0.212389380530973"; depth 113 ; unknown ; non-synonymous GL194317.1 samtools variation 44216 44216 . . . alleles " C T"; frequencies " 0.652777777777778 0.347222222222222"; depth 72 ; unknown ; N/A GL194317.1 samtools variation 44849 44849 . . . alleles " A G"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL194317.1 samtools variation 45215 45215 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL194317.1 samtools variation 45449 45449 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL194317.1 samtools variation 48700 48700 . . . alleles " A G"; frequencies " 0.753012048192771 0.246987951807229"; depth 166 ; unknown ; N/A GL194317.1 samtools variation 97847 97847 . . . alleles " T C"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL194317.1 samtools variation 126673 126673 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; non-synonymous GL194317.1 samtools variation 128278 128278 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; synonymous GL194317.1 samtools variation 128584 128584 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194317.1 samtools variation 146542 146542 . . . alleles " A T"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL194318.1 samtools variation 75203 75203 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 20 ; known ; non-synonymous GL194318.1 samtools variation 75252 75252 . . . alleles " A C"; frequencies " 0.2 0.8"; depth 15 ; known ; non-synonymous GL194322.1 samtools variation 65169 65169 . . . alleles " T G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL194322.1 samtools variation 65170 65170 . . . alleles " T A"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL194326.1 samtools variation 5765 5765 . . . alleles " G A"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL194328.1 samtools variation 64643 64643 . . . alleles " T C"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL194328.1 samtools variation 229222 229222 . . . alleles " C T"; frequencies " 0.783018867924528 0.216981132075472"; depth 106 ; unknown ; N/A GL194328.1 samtools variation 229352 229352 . . . alleles " G T"; frequencies " 0.495412844036697 0.504587155963303"; depth 109 ; unknown ; N/A GL194328.1 samtools variation 246599 246599 . . . alleles " C T"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL194328.1 samtools variation 248561 248561 . . . alleles " C G"; frequencies " 0.441176470588235 0.558823529411765"; depth 68 ; unknown ; N/A GL194329.1 samtools variation 250406 250406 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 55 ; unknown ; synonymous GL194329.1 samtools variation 251241 251241 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 57 ; unknown ; non-synonymous GL194329.1 samtools variation 251496 251496 . . . alleles " G A"; frequencies " 0.770642201834862 0.229357798165138"; depth 109 ; unknown ; non-synonymous GL194329.1 samtools variation 251747 251747 . . . alleles " G A"; frequencies " 0.716216216216216 0.283783783783784"; depth 74 ; unknown ; synonymous GL194329.1 samtools variation 251921 251921 . . . alleles " C T"; frequencies " 0.475 0.25"; depth 40 ; unknown ; N/A GL194329.1 samtools variation 252013 252013 . . . alleles " T C"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; unknown ; N/A GL194329.1 samtools variation 253153 253153 . . . alleles " C G"; frequencies " 0.386934673366834 0.613065326633166"; depth 199 ; unknown ; N/A GL194329.1 samtools variation 253427 253427 . . . alleles " C A"; frequencies " 0.6875 0.3125"; depth 64 ; unknown ; N/A GL194329.1 samtools variation 253471 253471 . . . alleles " G A"; frequencies " 0.327868852459016 0.672131147540984"; depth 61 ; unknown ; N/A GL194330.1 samtools variation 20981 20981 . . . alleles " C A"; frequencies " 0.777027027027027 0.222972972972973"; depth 148 ; unknown ; non-synonymous GL194330.1 samtools variation 45868 45868 . . . alleles " G A"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; N/A GL194330.1 samtools variation 46867 46867 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL194330.1 samtools variation 259155 259155 . . . alleles " G T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL194332.1 samtools variation 59903 59903 . . . alleles " C T"; frequencies " 0.783699059561129 0.216300940438871"; depth 319 ; unknown ; N/A GL194332.1 samtools variation 60506 60506 . . . alleles " T C"; frequencies " 0.217054263565891 0.782945736434108"; depth 129 ; known ; N/A GL194332.1 samtools variation 61375 61375 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; N/A GL194332.1 samtools variation 64929 64929 . . . alleles " G C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; known ; N/A GL194336.1 samtools variation 116179 116179 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL194336.1 samtools variation 119803 119803 . . . alleles " T C"; frequencies " 0.604651162790698 0.395348837209302"; depth 43 ; unknown ; N/A GL194336.1 samtools variation 120074 120074 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL194336.1 samtools variation 196115 196115 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL194336.1 samtools variation 213529 213529 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 39 ; unknown ; N/A GL194336.1 samtools variation 213982 213982 . . . alleles " T C"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL194336.1 samtools variation 214252 214252 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194336.1 samtools variation 214317 214317 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194336.1 samtools variation 217131 217131 . . . alleles " C T"; frequencies " 0.552447552447552 0.447552447552448"; depth 1001 ; unknown ; synonymous GL194336.1 samtools variation 218085 218085 . . . alleles " T C"; frequencies " 0.487238979118329 0.510440835266821"; depth 431 ; unknown ; N/A GL194336.1 samtools variation 219385 219385 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL194336.1 samtools variation 220332 220332 . . . alleles " A T"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL194336.1 samtools variation 221782 221782 . . . alleles " A G"; frequencies " 0.622641509433962 0.377358490566038"; depth 106 ; unknown ; N/A GL194336.1 samtools variation 227555 227555 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 69 ; unknown ; N/A GL194336.1 samtools variation 230480 230480 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL194338.1 samtools variation 89409 89409 . . . alleles " G A"; frequencies " 0.325 0.675"; depth 40 ; known ; N/A GL194342.1 samtools variation 140707 140707 . . . alleles " G A"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; known ; N/A GL194342.1 samtools variation 174517 174517 . . . alleles " G A"; frequencies " 0.488188976377953 0.511811023622047"; depth 127 ; unknown ; N/A GL194342.1 samtools variation 199497 199497 . . . alleles " C T"; frequencies " 0.764192139737991 0.235807860262009"; depth 229 ; unknown ; non-synonymous GL194342.1 samtools variation 223128 223128 . . . alleles " G C"; frequencies " 0.210526315789474 0.789473684210526"; depth 57 ; known ; N/A GL194349.1 samtools variation 73607 73607 . . . alleles " A T"; frequencies " 0.243421052631579 0.75"; depth 152 ; unknown ; N/A GL194349.1 samtools variation 73624 73624 . . . alleles " A C"; frequencies " 0.232558139534884 0.767441860465116"; depth 215 ; unknown ; N/A GL194349.1 samtools variation 83360 83360 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL194349.1 samtools variation 84276 84276 . . . alleles " A G"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; N/A GL194349.1 samtools variation 90800 90800 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 84 ; unknown ; N/A GL194349.1 samtools variation 91331 91331 . . . alleles " A C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; N/A GL194349.1 samtools variation 99760 99760 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 77 ; known ; N/A GL194349.1 samtools variation 107696 107696 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; N/A GL194349.1 samtools variation 139608 139608 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194354.1 samtools variation 82401 82401 . . . alleles " G C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL194354.1 samtools variation 94328 94328 . . . alleles " T C"; frequencies " 0.657534246575342 0.342465753424658"; depth 73 ; unknown ; synonymous GL194355.1 samtools variation 156907 156907 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL194355.1 samtools variation 158633 158633 . . . alleles " G A"; frequencies " 0.590717299578059 0.409282700421941"; depth 474 ; unknown ; N/A GL194355.1 samtools variation 225621 225621 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL194355.1 samtools variation 230849 230849 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL194355.1 samtools variation 232836 232836 . . . alleles " A C"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL194356.1 samtools variation 1367 1367 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL194356.1 samtools variation 11156 11156 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL194356.1 samtools variation 17222 17222 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL194356.1 samtools variation 17603 17603 . . . alleles " C T"; frequencies " 0.535714285714286 0.464285714285714"; depth 728 ; unknown ; non-synonymous GL194356.1 samtools variation 51692 51692 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL194357.1 samtools variation 114009 114009 . . . alleles " C A"; frequencies " 0.421052631578947 0.578947368421053"; depth 57 ; known ; synonymous GL194357.1 samtools variation 114087 114087 . . . alleles " T A"; frequencies " 0.554794520547945 0.445205479452055"; depth 146 ; known ; synonymous GL194357.1 samtools variation 114426 114426 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 84 ; known ; synonymous GL194357.1 samtools variation 114674 114674 . . . alleles " G T"; frequencies " 0.534246575342466 0.458904109589041"; depth 146 ; known ; synonymous GL194357.1 samtools variation 114936 114936 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 51 ; known ; synonymous GL194357.1 samtools variation 114969 114969 . . . alleles " C T"; frequencies " 0.551020408163265 0.448979591836735"; depth 49 ; known ; synonymous GL194360.1 samtools variation 94224 94224 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL194360.1 samtools variation 96437 96437 . . . alleles " G A"; frequencies " 0.522477522477522 0.477522477522478"; depth 1001 ; unknown ; N/A GL194360.1 samtools variation 101609 101609 . . . alleles " G A"; frequencies " 0.206349206349206 0.793650793650794"; depth 63 ; known ; N/A GL194360.1 samtools variation 102106 102106 . . . alleles " G A"; frequencies " 0.712074303405573 0.287925696594427"; depth 646 ; unknown ; non-synonymous GL194360.1 samtools variation 113556 113556 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL194360.1 samtools variation 114070 114070 . . . alleles " A C"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL194360.1 samtools variation 140192 140192 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194360.1 samtools variation 140194 140194 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194360.1 samtools variation 143420 143420 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 32 ; known ; N/A GL194360.1 samtools variation 176688 176688 . . . alleles " G A"; frequencies " 0.359649122807018 0.640350877192982"; depth 114 ; unknown ; synonymous GL194360.1 samtools variation 176733 176733 . . . alleles " G A"; frequencies " 0.398373983739837 0.601626016260163"; depth 123 ; unknown ; synonymous GL194360.1 samtools variation 177854 177854 . . . alleles " G A"; frequencies " 0.345132743362832 0.654867256637168"; depth 113 ; unknown ; synonymous GL194360.1 samtools variation 177983 177983 . . . alleles " C A"; frequencies " 0.623529411764706 0.376470588235294"; depth 170 ; unknown ; synonymous GL194360.1 samtools variation 190550 190550 . . . alleles " C T"; frequencies " 0.30952380952381 0.69047619047619"; depth 42 ; known ; N/A GL194360.1 samtools variation 200913 200913 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL194360.1 samtools variation 203360 203360 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 45 ; unknown ; synonymous GL194360.1 samtools variation 203557 203557 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL194360.1 samtools variation 211765 211765 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 80 ; unknown ; N/A GL194360.1 samtools variation 211978 211978 . . . alleles " T C"; frequencies " 0.607142857142857 0.392857142857143"; depth 56 ; known ; N/A GL194360.1 samtools variation 213037 213037 . . . alleles " C G"; frequencies " 0.672727272727273 0.327272727272727"; depth 55 ; known ; synonymous GL194360.1 samtools variation 226634 226634 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL194360.1 samtools variation 240093 240093 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194360.1 samtools variation 247292 247292 . . . alleles " T C"; frequencies " 0.394736842105263 0.605263157894737"; depth 38 ; known ; N/A GL194360.1 samtools variation 249190 249190 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL194363.1 samtools variation 6116 6116 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; known ; N/A GL194363.1 samtools variation 6414 6414 . . . alleles " G C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL194363.1 samtools variation 6737 6737 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL194363.1 samtools variation 7112 7112 . . . alleles " G A"; frequencies " 0.6875 0.25"; depth 16 ; unknown ; N/A GL194363.1 samtools variation 7801 7801 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL194363.1 samtools variation 55650 55650 . . . alleles " T A"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; unknown ; N/A GL194363.1 samtools variation 57372 57372 . . . alleles " A C"; frequencies " 0.787234042553192 0.212765957446809"; depth 47 ; unknown ; N/A GL194363.1 samtools variation 95543 95543 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 57 ; unknown ; non-synonymous GL194363.1 samtools variation 98280 98280 . . . alleles " T C"; frequencies " 0.37410071942446 0.62589928057554"; depth 139 ; known ; N/A GL194364.1 samtools variation 212524 212524 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL194364.1 samtools variation 240792 240792 . . . alleles " T C"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL194364.1 samtools variation 240882 240882 . . . alleles " A G"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL194365.1 samtools variation 131883 131883 . . . alleles " A G"; frequencies " 0.711656441717791 0.288343558282209"; depth 163 ; known ; synonymous GL194365.1 samtools variation 131948 131948 . . . alleles " T C"; frequencies " 0.617647058823529 0.382352941176471"; depth 102 ; known ; non-synonymous GL194365.1 samtools variation 153328 153328 . . . alleles " A G"; frequencies " 0.504761904761905 0.495238095238095"; depth 105 ; known ; N/A GL194365.1 samtools variation 153605 153605 . . . alleles " A G"; frequencies " 0.799256505576208 0.200743494423792"; depth 269 ; unknown ; N/A GL194365.1 samtools variation 153709 153709 . . . alleles " C T"; frequencies " 0.305164319248826 0.694835680751174"; depth 213 ; known ; N/A GL194365.1 samtools variation 157066 157066 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL194365.1 samtools variation 157726 157726 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 39 ; known ; N/A GL194365.1 samtools variation 185118 185118 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL194365.1 samtools variation 185211 185211 . . . alleles " T G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; known ; N/A GL194365.1 samtools variation 187444 187444 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL194365.1 samtools variation 187828 187828 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; known ; N/A GL194365.1 samtools variation 196743 196743 . . . alleles " A C"; frequencies " 0.301587301587302 0.698412698412698"; depth 63 ; known ; N/A GL194365.1 samtools variation 199886 199886 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL194365.1 samtools variation 200698 200698 . . . alleles " C A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; non-synonymous GL194365.1 samtools variation 201672 201672 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 20 ; known ; synonymous GL194365.1 samtools variation 252562 252562 . . . alleles " C G"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL194365.1 samtools variation 254942 254942 . . . alleles " G A"; frequencies " 0.725490196078431 0.274509803921569"; depth 51 ; unknown ; synonymous GL194371.1 samtools variation 1429 1429 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL194371.1 samtools variation 2285 2285 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL194371.1 samtools variation 2409 2409 . . . alleles " T A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL194371.1 samtools variation 7609 7609 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 40 ; unknown ; N/A GL194371.1 samtools variation 8412 8412 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL194371.1 samtools variation 9225 9225 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194371.1 samtools variation 9664 9664 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194371.1 samtools variation 9665 9665 . . . alleles " G T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194371.1 samtools variation 10258 10258 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL194371.1 samtools variation 10266 10266 . . . alleles " T C"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL194371.1 samtools variation 10405 10405 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL194371.1 samtools variation 11208 11208 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL194371.1 samtools variation 13083 13083 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL194371.1 samtools variation 13549 13549 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL194371.1 samtools variation 13614 13614 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194371.1 samtools variation 19111 19111 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL194371.1 samtools variation 19189 19189 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL194371.1 samtools variation 23880 23880 . . . alleles " A C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194371.1 samtools variation 25821 25821 . . . alleles " G A"; frequencies " 0.713917525773196 0.286082474226804"; depth 388 ; unknown ; N/A GL194371.1 samtools variation 26637 26637 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194371.1 samtools variation 69872 69872 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194378.1 samtools variation 34817 34817 . . . alleles " T C"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL194378.1 samtools variation 84933 84933 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; non-synonymous GL194378.1 samtools variation 84959 84959 . . . alleles " A G"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; synonymous GL194378.1 samtools variation 85731 85731 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; non-synonymous GL194378.1 samtools variation 86643 86643 . . . alleles " C T"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; non-synonymous GL194386.1 samtools variation 147658 147658 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194386.1 samtools variation 209357 209357 . . . alleles " C T"; frequencies " 0.340909090909091 0.659090909090909"; depth 132 ; known ; non-synonymous GL194386.1 samtools variation 222332 222332 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 64 ; known ; N/A GL194386.1 samtools variation 224125 224125 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL194386.1 samtools variation 228279 228279 . . . alleles " T G"; frequencies " 0.230769230769231 0.769230769230769"; depth 26 ; known ; N/A GL194386.1 samtools variation 228328 228328 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL194386.1 samtools variation 237033 237033 . . . alleles " T C"; frequencies " 0.770642201834862 0.220183486238532"; depth 109 ; known ; synonymous GL194389.1 samtools variation 165133 165133 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL194389.1 samtools variation 165682 165682 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; known ; N/A GL194389.1 samtools variation 165774 165774 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194389.1 samtools variation 165957 165957 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; known ; synonymous GL194389.1 samtools variation 165972 165972 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 35 ; known ; synonymous GL194389.1 samtools variation 166014 166014 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; known ; synonymous GL194389.1 samtools variation 166623 166623 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; synonymous GL194389.1 samtools variation 167459 167459 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194390.1 samtools variation 57885 57885 . . . alleles " A G"; frequencies " 0.42 0.58"; depth 50 ; unknown ; N/A GL194390.1 samtools variation 59376 59376 . . . alleles " C G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL194390.1 samtools variation 62164 62164 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL194390.1 samtools variation 64657 64657 . . . alleles " G A"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL194392.1 samtools variation 737 737 . . . alleles " C T"; frequencies " 0.438775510204082 0.561224489795918"; depth 98 ; unknown ; N/A GL194392.1 samtools variation 57093 57093 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 60 ; unknown ; N/A GL194392.1 samtools variation 88620 88620 . . . alleles " T C"; frequencies " 0.696629213483146 0.303370786516854"; depth 89 ; unknown ; N/A GL194392.1 samtools variation 242855 242855 . . . alleles " A C"; frequencies " 0.368421052631579 0.631578947368421"; depth 57 ; unknown ; N/A GL194393.1 samtools variation 230595 230595 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL194393.1 samtools variation 231028 231028 . . . alleles " T C"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; known ; N/A GL194393.1 samtools variation 231225 231225 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; known ; N/A GL194393.1 samtools variation 231265 231265 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL194393.1 samtools variation 232548 232548 . . . alleles " T G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL194393.1 samtools variation 234149 234149 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; known ; N/A GL194393.1 samtools variation 234473 234473 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL194393.1 samtools variation 235000 235000 . . . alleles " A G"; frequencies " 0.201492537313433 0.798507462686567"; depth 134 ; known ; non-synonymous GL194393.1 samtools variation 235019 235019 . . . alleles " G A"; frequencies " 0.596899224806202 0.403100775193798"; depth 129 ; known ; non-synonymous GL194393.1 samtools variation 240973 240973 . . . alleles " G A"; frequencies " 0.422907488986784 0.577092511013216"; depth 227 ; known ; synonymous GL194394.1 samtools variation 76936 76936 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; synonymous GL194394.1 samtools variation 77592 77592 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL194396.1 samtools variation 30310 30310 . . . alleles " G C"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL194396.1 samtools variation 30413 30413 . . . alleles " G A"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL194396.1 samtools variation 30519 30519 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL194396.1 samtools variation 42350 42350 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL194396.1 samtools variation 44522 44522 . . . alleles " G T"; frequencies " 0.757894736842105 0.242105263157895"; depth 95 ; unknown ; non-synonymous GL194396.1 samtools variation 46050 46050 . . . alleles " G T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL194396.1 samtools variation 56575 56575 . . . alleles " A G"; frequencies " 0.698324022346369 0.301675977653631"; depth 179 ; known ; non-synonymous GL194396.1 samtools variation 68961 68961 . . . alleles " G A"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL194396.1 samtools variation 69241 69241 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 69 ; known ; N/A GL194396.1 samtools variation 96229 96229 . . . alleles " T C"; frequencies " 0.274193548387097 0.725806451612903"; depth 62 ; known ; synonymous GL194396.1 samtools variation 96253 96253 . . . alleles " G T"; frequencies " 0.27536231884058 0.72463768115942"; depth 69 ; known ; synonymous GL194396.1 samtools variation 100392 100392 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL194396.1 samtools variation 103516 103516 . . . alleles " C T"; frequencies " 0.378600823045267 0.621399176954732"; depth 243 ; unknown ; synonymous GL194396.1 samtools variation 104267 104267 . . . alleles " A G"; frequencies " 0.345864661654135 0.654135338345865"; depth 133 ; unknown ; synonymous GL194396.1 samtools variation 115569 115569 . . . alleles " A G"; frequencies " 0.239488117001828 0.760511882998172"; depth 547 ; known ; N/A GL194396.1 samtools variation 118924 118924 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL194396.1 samtools variation 171654 171654 . . . alleles " G A"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; synonymous GL194396.1 samtools variation 191603 191603 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL194396.1 samtools variation 233093 233093 . . . alleles " G A"; frequencies " 0.44 0.56"; depth 25 ; unknown ; synonymous GL194396.1 samtools variation 234445 234445 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194396.1 samtools variation 242471 242471 . . . alleles " C T"; frequencies " 0.457627118644068 0.542372881355932"; depth 236 ; unknown ; N/A GL194396.1 samtools variation 244318 244318 . . . alleles " G A"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL194396.1 samtools variation 244461 244461 . . . alleles " T G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL194396.1 samtools variation 244485 244485 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL194396.1 samtools variation 245761 245761 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL194396.1 samtools variation 246001 246001 . . . alleles " C G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL194403.1 samtools variation 6143 6143 . . . alleles " T C"; frequencies " 0.575221238938053 0.424778761061947"; depth 113 ; unknown ; N/A GL194403.1 samtools variation 42091 42091 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; known ; synonymous GL194403.1 samtools variation 42119 42119 . . . alleles " G A"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; unknown ; non-synonymous GL194403.1 samtools variation 43073 43073 . . . alleles " T C"; frequencies " 0.754716981132076 0.245283018867925"; depth 53 ; known ; synonymous GL194403.1 samtools variation 85054 85054 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194403.1 samtools variation 94353 94353 . . . alleles " G A"; frequencies " 0.66 0.34"; depth 50 ; unknown ; N/A GL194403.1 samtools variation 94747 94747 . . . alleles " A C"; frequencies " 0.310344827586207 0.689655172413793"; depth 29 ; unknown ; N/A GL194413.1 samtools variation 16104 16104 . . . alleles " A C"; frequencies " 0.672727272727273 0.327272727272727"; depth 55 ; known ; N/A GL194413.1 samtools variation 16129 16129 . . . alleles " G A"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; N/A GL194413.1 samtools variation 16846 16846 . . . alleles " A C"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; known ; N/A GL194413.1 samtools variation 18035 18035 . . . alleles " A G"; frequencies " 0.372549019607843 0.627450980392157"; depth 51 ; known ; synonymous GL194413.1 samtools variation 19662 19662 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; synonymous GL194413.1 samtools variation 20779 20779 . . . alleles " C T"; frequencies " 0.326086956521739 0.673913043478261"; depth 46 ; known ; synonymous GL194413.1 samtools variation 20821 20821 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 49 ; known ; synonymous GL194413.1 samtools variation 21279 21279 . . . alleles " T C"; frequencies " 0.558139534883721 0.441860465116279"; depth 43 ; known ; synonymous GL194413.1 samtools variation 25428 25428 . . . alleles " G T"; frequencies " 0.725490196078431 0.274509803921569"; depth 51 ; unknown ; synonymous GL194413.1 samtools variation 27625 27625 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL194413.1 samtools variation 32319 32319 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; synonymous GL194413.1 samtools variation 49492 49492 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; synonymous GL194413.1 samtools variation 56627 56627 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; synonymous GL194413.1 samtools variation 60374 60374 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; synonymous GL194413.1 samtools variation 60428 60428 . . . alleles " C T"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; known ; synonymous GL194413.1 samtools variation 61644 61644 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 46 ; unknown ; synonymous GL194413.1 samtools variation 62609 62609 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; known ; synonymous GL194413.1 samtools variation 62677 62677 . . . alleles " G A"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; known ; synonymous GL194413.1 samtools variation 85035 85035 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL194414.1 samtools variation 11217 11217 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; synonymous GL194414.1 samtools variation 45651 45651 . . . alleles " C T"; frequencies " 0.782051282051282 0.217948717948718"; depth 78 ; unknown ; N/A GL194414.1 samtools variation 50103 50103 . . . alleles " C A"; frequencies " 0.648648648648649 0.351351351351351"; depth 74 ; unknown ; N/A GL194414.1 samtools variation 50179 50179 . . . alleles " T C"; frequencies " 0.581395348837209 0.418604651162791"; depth 43 ; unknown ; N/A GL194414.1 samtools variation 50508 50508 . . . alleles " C T"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; known ; N/A GL194414.1 samtools variation 84869 84869 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL194414.1 samtools variation 103573 103573 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194414.1 samtools variation 103844 103844 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL194414.1 samtools variation 104067 104067 . . . alleles " T C"; frequencies " 0.618181818181818 0.381818181818182"; depth 55 ; known ; N/A GL194414.1 samtools variation 104238 104238 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194414.1 samtools variation 104286 104286 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL194414.1 samtools variation 104602 104602 . . . alleles " G A"; frequencies " 0.76056338028169 0.23943661971831"; depth 71 ; known ; N/A GL194414.1 samtools variation 104801 104801 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 48 ; unknown ; N/A GL194414.1 samtools variation 106621 106621 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 36 ; unknown ; synonymous GL194414.1 samtools variation 114259 114259 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL194414.1 samtools variation 114267 114267 . . . alleles " A G"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL194414.1 samtools variation 216961 216961 . . . alleles " T G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL194414.1 samtools variation 220095 220095 . . . alleles " G C"; frequencies " 0.35 0.65"; depth 20 ; unknown ; N/A GL194414.1 samtools variation 220300 220300 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; unknown ; N/A GL194414.1 samtools variation 230538 230538 . . . alleles " C G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL194414.1 samtools variation 231845 231845 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL194416.1 samtools variation 192516 192516 . . . alleles " C T"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; unknown ; N/A GL194416.1 samtools variation 200047 200047 . . . alleles " A G"; frequencies " 0.381818181818182 0.618181818181818"; depth 55 ; known ; non-synonymous GL194418.1 samtools variation 68614 68614 . . . alleles " A G"; frequencies " 0.746835443037975 0.253164556962025"; depth 79 ; unknown ; non-synonymous GL194425.1 samtools variation 97595 97595 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; synonymous GL194425.1 samtools variation 118394 118394 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL194425.1 samtools variation 119356 119356 . . . alleles " T C"; frequencies " 0.522727272727273 0.477272727272727"; depth 44 ; unknown ; synonymous GL194425.1 samtools variation 144672 144672 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL194425.1 samtools variation 145111 145111 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; unknown ; N/A GL194425.1 samtools variation 145411 145411 . . . alleles " T C"; frequencies " 0.317073170731707 0.682926829268293"; depth 41 ; unknown ; N/A GL194425.1 samtools variation 145593 145593 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 80 ; unknown ; synonymous GL194425.1 samtools variation 145731 145731 . . . alleles " G T"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; unknown ; N/A GL194425.1 samtools variation 148031 148031 . . . alleles " C T"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL194425.1 samtools variation 148153 148153 . . . alleles " G A"; frequencies " 0.626262626262626 0.373737373737374"; depth 99 ; unknown ; synonymous GL194425.1 samtools variation 148553 148553 . . . alleles " T C"; frequencies " 0.7625 0.2375"; depth 80 ; unknown ; N/A GL194425.1 samtools variation 148849 148849 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL194425.1 samtools variation 148884 148884 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL194425.1 samtools variation 148942 148942 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL194425.1 samtools variation 149108 149108 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL194425.1 samtools variation 149239 149239 . . . alleles " T G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL194425.1 samtools variation 149762 149762 . . . alleles " C T"; frequencies " 0.74468085106383 0.25531914893617"; depth 141 ; unknown ; N/A GL194425.1 samtools variation 149815 149815 . . . alleles " T C"; frequencies " 0.759493670886076 0.240506329113924"; depth 79 ; unknown ; N/A GL194425.1 samtools variation 151185 151185 . . . alleles " G A"; frequencies " 0.73489932885906 0.26510067114094"; depth 298 ; unknown ; synonymous GL194425.1 samtools variation 152742 152742 . . . alleles " A T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL194425.1 samtools variation 162933 162933 . . . alleles " T A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL194425.1 samtools variation 166533 166533 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL194425.1 samtools variation 167862 167862 . . . alleles " A G"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; unknown ; N/A GL194425.1 samtools variation 172622 172622 . . . alleles " T A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL194425.1 samtools variation 173219 173219 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194425.1 samtools variation 173231 173231 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL194425.1 samtools variation 173737 173737 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL194425.1 samtools variation 176054 176054 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL194425.1 samtools variation 176600 176600 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL194425.1 samtools variation 185188 185188 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL194425.1 samtools variation 190373 190373 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; synonymous GL194426.1 samtools variation 21873 21873 . . . alleles " G A"; frequencies " 0.747474747474748 0.252525252525253"; depth 99 ; unknown ; N/A GL194426.1 samtools variation 25203 25203 . . . alleles " C T"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL194426.1 samtools variation 26047 26047 . . . alleles " A C"; frequencies " 0.783783783783784 0.216216216216216"; depth 74 ; unknown ; N/A GL194426.1 samtools variation 26127 26127 . . . alleles " A C"; frequencies " 0.720930232558139 0.27906976744186"; depth 43 ; unknown ; N/A GL194426.1 samtools variation 26280 26280 . . . alleles " C T"; frequencies " 0.759493670886076 0.240506329113924"; depth 79 ; unknown ; N/A GL194426.1 samtools variation 26619 26619 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL194428.1 samtools variation 184944 184944 . . . alleles " G T"; frequencies " 0.527272727272727 0.472727272727273"; depth 165 ; unknown ; N/A GL194428.1 samtools variation 185967 185967 . . . alleles " G A"; frequencies " 0.536121673003802 0.463878326996198"; depth 263 ; unknown ; N/A GL194428.1 samtools variation 186702 186702 . . . alleles " A G"; frequencies " 0.495327102803738 0.504672897196262"; depth 214 ; unknown ; N/A GL194428.1 samtools variation 199605 199605 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194429.1 samtools variation 70457 70457 . . . alleles " T C"; frequencies " 0.630252100840336 0.369747899159664"; depth 119 ; known ; N/A GL194429.1 samtools variation 70684 70684 . . . alleles " A C"; frequencies " 0.575 0.425"; depth 40 ; known ; N/A GL194429.1 samtools variation 71492 71492 . . . alleles " G A"; frequencies " 0.627906976744186 0.372093023255814"; depth 43 ; unknown ; N/A GL194429.1 samtools variation 81155 81155 . . . alleles " G A"; frequencies " 0.702702702702703 0.297297297297297"; depth 148 ; unknown ; non-synonymous GL194429.1 samtools variation 87786 87786 . . . alleles " T C"; frequencies " 0.724137931034483 0.275862068965517"; depth 58 ; known ; non-synonymous GL194429.1 samtools variation 95682 95682 . . . alleles " T C"; frequencies " 0.246753246753247 0.753246753246753"; depth 77 ; known ; non-synonymous GL194429.1 samtools variation 96560 96560 . . . alleles " T A"; frequencies " 0.76271186440678 0.23728813559322"; depth 59 ; unknown ; non-synonymous GL194429.1 samtools variation 113015 113015 . . . alleles " G A"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; synonymous GL194429.1 samtools variation 117992 117992 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 46 ; unknown ; synonymous GL194429.1 samtools variation 190253 190253 . . . alleles " C A"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL194429.1 samtools variation 190775 190775 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL194429.1 samtools variation 203993 203993 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL194430.1 samtools variation 75372 75372 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; unknown ; N/A GL194430.1 samtools variation 200876 200876 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 48 ; unknown ; N/A GL194430.1 samtools variation 201908 201908 . . . alleles " A G"; frequencies " 0.76 0.24"; depth 125 ; unknown ; N/A GL194430.1 samtools variation 202287 202287 . . . alleles " A G"; frequencies " 0.537190082644628 0.462809917355372"; depth 121 ; unknown ; N/A GL194430.1 samtools variation 202300 202300 . . . alleles " G A"; frequencies " 0.528846153846154 0.471153846153846"; depth 208 ; unknown ; N/A GL194430.1 samtools variation 203027 203027 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL194431.1 samtools variation 41380 41380 . . . alleles " C G"; frequencies " 0.660550458715596 0.339449541284404"; depth 109 ; known ; N/A GL194431.1 samtools variation 84500 84500 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL194431.1 samtools variation 117240 117240 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL194431.1 samtools variation 139100 139100 . . . alleles " G A"; frequencies " 0.616457461645746 0.379358437935844"; depth 717 ; unknown ; synonymous GL194431.1 samtools variation 164103 164103 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL194431.1 samtools variation 167489 167489 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL194431.1 samtools variation 172602 172602 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194431.1 samtools variation 172603 172603 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194433.1 samtools variation 53445 53445 . . . alleles " G A"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL194433.1 samtools variation 141564 141564 . . . alleles " C G"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL194433.1 samtools variation 143177 143177 . . . alleles " A T"; frequencies " 0.325581395348837 0.674418604651163"; depth 43 ; known ; N/A GL194433.1 samtools variation 145596 145596 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; known ; N/A GL194433.1 samtools variation 163811 163811 . . . alleles " A G"; frequencies " 0.579545454545455 0.420454545454545"; depth 88 ; unknown ; synonymous GL194434.1 samtools variation 69493 69493 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL194434.1 samtools variation 70919 70919 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL194434.1 samtools variation 71524 71524 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL194434.1 samtools variation 71589 71589 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL194434.1 samtools variation 72259 72259 . . . alleles " T G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL194434.1 samtools variation 72781 72781 . . . alleles " A G"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; known ; N/A GL194434.1 samtools variation 72803 72803 . . . alleles " C A"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL194434.1 samtools variation 74130 74130 . . . alleles " A T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; synonymous GL194435.1 samtools variation 108308 108308 . . . alleles " C T"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; known ; synonymous GL194435.1 samtools variation 229405 229405 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL194435.1 samtools variation 229789 229789 . . . alleles " T C"; frequencies " 0.517857142857143 0.482142857142857"; depth 56 ; unknown ; N/A GL194440.1 samtools variation 226452 226452 . . . alleles " G A"; frequencies " 0.24 0.72"; depth 25 ; known ; N/A GL194440.1 samtools variation 226893 226893 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL194440.1 samtools variation 229122 229122 . . . alleles " C G"; frequencies " 0.728571428571429 0.271428571428571"; depth 70 ; known ; N/A GL194442.1 samtools variation 21787 21787 . . . alleles " G A"; frequencies " 0.658536585365854 0.341463414634146"; depth 41 ; known ; N/A GL194442.1 samtools variation 26142 26142 . . . alleles " C G"; frequencies " 0.594202898550725 0.405797101449275"; depth 69 ; unknown ; N/A GL194442.1 samtools variation 41971 41971 . . . alleles " G A"; frequencies " 0.764 0.236"; depth 250 ; unknown ; N/A GL194442.1 samtools variation 42210 42210 . . . alleles " C T"; frequencies " 0.788863109048724 0.211136890951276"; depth 431 ; unknown ; N/A GL194442.1 samtools variation 42253 42253 . . . alleles " A G"; frequencies " 0.280269058295964 0.719730941704036"; depth 446 ; known ; N/A GL194442.1 samtools variation 43508 43508 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL194442.1 samtools variation 60647 60647 . . . alleles " G C"; frequencies " 0.5625 0.4375"; depth 48 ; known ; N/A GL194442.1 samtools variation 61333 61333 . . . alleles " T C"; frequencies " 0.568181818181818 0.431818181818182"; depth 44 ; known ; N/A GL194442.1 samtools variation 62565 62565 . . . alleles " A G"; frequencies " 0.594594594594595 0.405405405405405"; depth 37 ; known ; N/A GL194442.1 samtools variation 64652 64652 . . . alleles " T C"; frequencies " 0.594594594594595 0.405405405405405"; depth 37 ; known ; N/A GL194442.1 samtools variation 75772 75772 . . . alleles " A G"; frequencies " 0.641618497109827 0.358381502890173"; depth 173 ; known ; N/A GL194442.1 samtools variation 75989 75989 . . . alleles " C T"; frequencies " 0.744186046511628 0.255813953488372"; depth 86 ; unknown ; N/A GL194442.1 samtools variation 76579 76579 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; known ; N/A GL194442.1 samtools variation 102466 102466 . . . alleles " A G"; frequencies " 0.720930232558139 0.27906976744186"; depth 43 ; known ; N/A GL194442.1 samtools variation 108038 108038 . . . alleles " A G"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL194442.1 samtools variation 108223 108223 . . . alleles " C A"; frequencies " 0.634194831013916 0.365805168986084"; depth 503 ; unknown ; non-synonymous GL194442.1 samtools variation 111036 111036 . . . alleles " A G"; frequencies " 0.378125 0.621875"; depth 320 ; known ; synonymous GL194442.1 samtools variation 115972 115972 . . . alleles " T A"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; known ; N/A GL194442.1 samtools variation 125884 125884 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 25 ; known ; N/A GL194442.1 samtools variation 126694 126694 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL194442.1 samtools variation 152307 152307 . . . alleles " C T"; frequencies " 0.794666666666667 0.205333333333333"; depth 375 ; unknown ; synonymous GL194442.1 samtools variation 152452 152452 . . . alleles " G A"; frequencies " 0.799050632911392 0.200949367088608"; depth 1264 ; unknown ; N/A GL194442.1 samtools variation 155181 155181 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL194442.1 samtools variation 169261 169261 . . . alleles " A G"; frequencies " 0.450980392156863 0.549019607843137"; depth 51 ; known ; N/A GL194442.1 samtools variation 187305 187305 . . . alleles " G T"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; known ; N/A GL194442.1 samtools variation 194245 194245 . . . alleles " A G"; frequencies " 0.773279352226721 0.226720647773279"; depth 247 ; unknown ; N/A GL194442.1 samtools variation 194324 194324 . . . alleles " C T"; frequencies " 0.376325088339223 0.623674911660777"; depth 566 ; known ; N/A GL194442.1 samtools variation 194614 194614 . . . alleles " G A"; frequencies " 0.745901639344262 0.254098360655738"; depth 366 ; unknown ; N/A GL194442.1 samtools variation 196464 196464 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL194442.1 samtools variation 227058 227058 . . . alleles " G A"; frequencies " 0.673366834170854 0.326633165829146"; depth 199 ; unknown ; synonymous GL194442.1 samtools variation 227067 227067 . . . alleles " C T"; frequencies " 0.488095238095238 0.511904761904762"; depth 252 ; unknown ; synonymous GL194453.1 samtools variation 24829 24829 . . . alleles " G A"; frequencies " 0.766129032258065 0.233870967741935"; depth 620 ; unknown ; synonymous GL194453.1 samtools variation 28303 28303 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL194453.1 samtools variation 32672 32672 . . . alleles " T C"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL194453.1 samtools variation 35366 35366 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 54 ; unknown ; N/A GL194453.1 samtools variation 35550 35550 . . . alleles " C G"; frequencies " 0.737704918032787 0.262295081967213"; depth 122 ; unknown ; N/A GL194453.1 samtools variation 35890 35890 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL194453.1 samtools variation 38217 38217 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 99 ; unknown ; N/A GL194453.1 samtools variation 55291 55291 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL194453.1 samtools variation 59453 59453 . . . alleles " C T"; frequencies " 0.356643356643357 0.643356643356643"; depth 143 ; known ; N/A GL194453.1 samtools variation 120375 120375 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; N/A GL194453.1 samtools variation 167106 167106 . . . alleles " A G"; frequencies " 0.798816568047337 0.201183431952663"; depth 169 ; unknown ; synonymous GL194453.1 samtools variation 177500 177500 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL194453.1 samtools variation 186464 186464 . . . alleles " C T"; frequencies " 0.785234899328859 0.214765100671141"; depth 149 ; unknown ; non-synonymous GL194456.1 samtools variation 183204 183204 . . . alleles " G A"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL194460.1 samtools variation 8299 8299 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194460.1 samtools variation 83211 83211 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 70 ; unknown ; non-synonymous GL194460.1 samtools variation 88325 88325 . . . alleles " C T"; frequencies " 0.315789473684211 0.684210526315789"; depth 38 ; unknown ; synonymous GL194460.1 samtools variation 88411 88411 . . . alleles " C G"; frequencies " 0.611111111111111 0.388888888888889"; depth 54 ; unknown ; non-synonymous GL194460.1 samtools variation 88433 88433 . . . alleles " C T"; frequencies " 0.280701754385965 0.719298245614035"; depth 57 ; unknown ; synonymous GL194460.1 samtools variation 88831 88831 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; N/A GL194460.1 samtools variation 90647 90647 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL194460.1 samtools variation 90791 90791 . . . alleles " T C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL194460.1 samtools variation 92053 92053 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL194460.1 samtools variation 92214 92214 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL194460.1 samtools variation 134491 134491 . . . alleles " C T"; frequencies " 0.377410468319559 0.622589531680441"; depth 363 ; unknown ; synonymous GL194460.1 samtools variation 134950 134950 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL194460.1 samtools variation 135030 135030 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL194460.1 samtools variation 138008 138008 . . . alleles " A T"; frequencies " 0.304347826086957 0.695652173913043"; depth 299 ; unknown ; N/A GL194460.1 samtools variation 138055 138055 . . . alleles " T G"; frequencies " 0.449664429530201 0.550335570469799"; depth 298 ; unknown ; N/A GL194460.1 samtools variation 138616 138616 . . . alleles " G T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194460.1 samtools variation 139010 139010 . . . alleles " A T"; frequencies " 0.774193548387097 0.225806451612903"; depth 62 ; unknown ; N/A GL194460.1 samtools variation 139933 139933 . . . alleles " G A"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; unknown ; N/A GL194460.1 samtools variation 139953 139953 . . . alleles " T C"; frequencies " 0.40625 0.59375"; depth 32 ; unknown ; N/A GL194460.1 samtools variation 140410 140410 . . . alleles " C T"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; unknown ; N/A GL194460.1 samtools variation 141285 141285 . . . alleles " G A"; frequencies " 0.501901140684411 0.498098859315589"; depth 789 ; unknown ; non-synonymous GL194460.1 samtools variation 141623 141623 . . . alleles " T C"; frequencies " 0.644413537320352 0.355122855818266"; depth 2157 ; unknown ; N/A GL194460.1 samtools variation 141724 141724 . . . alleles " T C"; frequencies " 0.295081967213115 0.704918032786885"; depth 305 ; unknown ; N/A GL194460.1 samtools variation 141776 141776 . . . alleles " G T"; frequencies " 0.242378048780488 0.757621951219512"; depth 656 ; unknown ; N/A GL194460.1 samtools variation 142036 142036 . . . alleles " T A"; frequencies " 0.553672316384181 0.446327683615819"; depth 885 ; unknown ; N/A GL194460.1 samtools variation 142182 142182 . . . alleles " G A"; frequencies " 0.57429718875502 0.424364123159304"; depth 747 ; unknown ; N/A GL194460.1 samtools variation 142378 142378 . . . alleles " T C"; frequencies " 0.576923076923077 0.423076923076923"; depth 208 ; unknown ; N/A GL194460.1 samtools variation 142407 142407 . . . alleles " C T"; frequencies " 0.517948717948718 0.482051282051282"; depth 195 ; unknown ; N/A GL194460.1 samtools variation 144483 144483 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL194460.1 samtools variation 144491 144491 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL194460.1 samtools variation 150855 150855 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194460.1 samtools variation 150878 150878 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194460.1 samtools variation 151768 151768 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL194460.1 samtools variation 151802 151802 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL194460.1 samtools variation 189990 189990 . . . alleles " C T"; frequencies " 0.443396226415094 0.556603773584906"; depth 106 ; unknown ; synonymous GL194464.1 samtools variation 4119 4119 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL194464.1 samtools variation 5272 5272 . . . alleles " C T"; frequencies " 0.628205128205128 0.371794871794872"; depth 78 ; unknown ; N/A GL194464.1 samtools variation 7111 7111 . . . alleles " A G"; frequencies " 0.653846153846154 0.346153846153846"; depth 52 ; unknown ; N/A GL194464.1 samtools variation 28786 28786 . . . alleles " G T"; frequencies " 0.663265306122449 0.336734693877551"; depth 98 ; unknown ; N/A GL194464.1 samtools variation 29032 29032 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194464.1 samtools variation 36945 36945 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL194464.1 samtools variation 55356 55356 . . . alleles " G A"; frequencies " 0.609756097560976 0.390243902439024"; depth 41 ; unknown ; N/A GL194464.1 samtools variation 57373 57373 . . . alleles " C T"; frequencies " 0.594936708860759 0.405063291139241"; depth 79 ; unknown ; N/A GL194464.1 samtools variation 57477 57477 . . . alleles " T G"; frequencies " 0.469387755102041 0.530612244897959"; depth 49 ; unknown ; N/A GL194464.1 samtools variation 59190 59190 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 51 ; unknown ; N/A GL194464.1 samtools variation 59514 59514 . . . alleles " A C"; frequencies " 0.627218934911243 0.372781065088757"; depth 169 ; unknown ; N/A GL194464.1 samtools variation 59617 59617 . . . alleles " A C"; frequencies " 0.543689320388349 0.456310679611651"; depth 206 ; unknown ; N/A GL194464.1 samtools variation 59637 59637 . . . alleles " G A"; frequencies " 0.615023474178404 0.384976525821596"; depth 213 ; unknown ; N/A GL194464.1 samtools variation 60953 60953 . . . alleles " T C"; frequencies " 0.580246913580247 0.419753086419753"; depth 81 ; unknown ; N/A GL194464.1 samtools variation 61480 61480 . . . alleles " C T"; frequencies " 0.661016949152542 0.338983050847458"; depth 59 ; unknown ; N/A GL194464.1 samtools variation 64864 64864 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL194464.1 samtools variation 65260 65260 . . . alleles " A C"; frequencies " 0.60377358490566 0.39622641509434"; depth 53 ; unknown ; N/A GL194464.1 samtools variation 65390 65390 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 60 ; unknown ; N/A GL194464.1 samtools variation 67202 67202 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194464.1 samtools variation 68089 68089 . . . alleles " G C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL194464.1 samtools variation 98930 98930 . . . alleles " G A"; frequencies " 0.210526315789474 0.789473684210526"; depth 57 ; unknown ; N/A GL194464.1 samtools variation 98963 98963 . . . alleles " G A"; frequencies " 0.228915662650602 0.771084337349398"; depth 83 ; unknown ; N/A GL194464.1 samtools variation 101176 101176 . . . alleles " G T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL194464.1 samtools variation 103943 103943 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; synonymous GL194464.1 samtools variation 115320 115320 . . . alleles " T C"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; unknown ; non-synonymous GL194464.1 samtools variation 115397 115397 . . . alleles " T G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; non-synonymous GL194464.1 samtools variation 115409 115409 . . . alleles " G A"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; non-synonymous GL194464.1 samtools variation 118161 118161 . . . alleles " T G"; frequencies " 0.375 0.625"; depth 24 ; known ; non-synonymous GL194464.1 samtools variation 118170 118170 . . . alleles " G T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; non-synonymous GL194464.1 samtools variation 147284 147284 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL194464.1 samtools variation 147571 147571 . . . alleles " G A"; frequencies " 0.643939393939394 0.356060606060606"; depth 132 ; unknown ; N/A GL194464.1 samtools variation 147861 147861 . . . alleles " G A"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; known ; N/A GL194464.1 samtools variation 148061 148061 . . . alleles " T C"; frequencies " 0.385714285714286 0.614285714285714"; depth 70 ; known ; synonymous GL194464.1 samtools variation 152413 152413 . . . alleles " G A"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; non-synonymous GL194464.1 samtools variation 152449 152449 . . . alleles " G C"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; non-synonymous GL194464.1 samtools variation 152775 152775 . . . alleles " T G"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; non-synonymous GL194464.1 samtools variation 154824 154824 . . . alleles " A G"; frequencies " 0.326530612244898 0.673469387755102"; depth 49 ; known ; non-synonymous GL194464.1 samtools variation 154897 154897 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; synonymous GL194464.1 samtools variation 158909 158909 . . . alleles " C T"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL194464.1 samtools variation 162811 162811 . . . alleles " G A"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; unknown ; synonymous GL194464.1 samtools variation 164601 164601 . . . alleles " C G"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; unknown ; synonymous GL194464.1 samtools variation 194793 194793 . . . alleles " G A"; frequencies " 0.275 0.725"; depth 40 ; unknown ; N/A GL194464.1 samtools variation 194958 194958 . . . alleles " C T"; frequencies " 0.305555555555556 0.694444444444444"; depth 36 ; unknown ; N/A GL194464.1 samtools variation 194999 194999 . . . alleles " G C"; frequencies " 0.264705882352941 0.735294117647059"; depth 34 ; unknown ; N/A GL194464.1 samtools variation 195089 195089 . . . alleles " A G"; frequencies " 0.254237288135593 0.745762711864407"; depth 59 ; unknown ; N/A GL194464.1 samtools variation 195274 195274 . . . alleles " G A"; frequencies " 0.385542168674699 0.614457831325301"; depth 83 ; unknown ; N/A GL194464.1 samtools variation 195311 195311 . . . alleles " G A"; frequencies " 0.559322033898305 0.440677966101695"; depth 59 ; unknown ; N/A GL194464.1 samtools variation 195356 195356 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 36 ; known ; N/A GL194464.1 samtools variation 195404 195404 . . . alleles " A C"; frequencies " 0.607142857142857 0.392857142857143"; depth 28 ; unknown ; N/A GL194464.1 samtools variation 195778 195778 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 57 ; unknown ; synonymous GL194464.1 samtools variation 195794 195794 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 54 ; unknown ; non-synonymous GL194464.1 samtools variation 198572 198572 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL194464.1 samtools variation 198609 198609 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL194464.1 samtools variation 199019 199019 . . . alleles " A G"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL194464.1 samtools variation 199334 199334 . . . alleles " G A"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL194464.1 samtools variation 200033 200033 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL194464.1 samtools variation 200192 200192 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL194464.1 samtools variation 200502 200502 . . . alleles " G T"; frequencies " 0.424242424242424 0.575757575757576"; depth 33 ; unknown ; N/A GL194466.1 samtools variation 153729 153729 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 52 ; unknown ; N/A GL194467.1 samtools variation 150283 150283 . . . alleles " A G"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; non-synonymous GL194476.1 samtools variation 2701 2701 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL194476.1 samtools variation 59830 59830 . . . alleles " C T"; frequencies " 0.782258064516129 0.217741935483871"; depth 124 ; unknown ; synonymous GL194476.1 samtools variation 59833 59833 . . . alleles " C T"; frequencies " 0.767241379310345 0.232758620689655"; depth 116 ; unknown ; synonymous GL194476.1 samtools variation 69312 69312 . . . alleles " T G"; frequencies " 0.305970149253731 0.694029850746269"; depth 134 ; known ; non-synonymous GL194476.1 samtools variation 69904 69904 . . . alleles " C G"; frequencies " 0.732142857142857 0.267857142857143"; depth 112 ; known ; non-synonymous GL194476.1 samtools variation 74619 74619 . . . alleles " G C"; frequencies " 0.256544502617801 0.743455497382199"; depth 191 ; known ; synonymous GL194476.1 samtools variation 79502 79502 . . . alleles " C T"; frequencies " 0.258823529411765 0.741176470588235"; depth 85 ; known ; synonymous GL194476.1 samtools variation 79571 79571 . . . alleles " C T"; frequencies " 0.593984962406015 0.406015037593985"; depth 133 ; known ; synonymous GL194476.1 samtools variation 106500 106500 . . . alleles " A G"; frequencies " 0.740740740740741 0.259259259259259"; depth 135 ; known ; synonymous GL194476.1 samtools variation 108096 108096 . . . alleles " T C"; frequencies " 0.758169934640523 0.241830065359477"; depth 153 ; known ; non-synonymous GL194476.1 samtools variation 109042 109042 . . . alleles " C T"; frequencies " 0.258823529411765 0.741176470588235"; depth 255 ; known ; synonymous GL194476.1 samtools variation 113013 113013 . . . alleles " T C"; frequencies " 0.753191489361702 0.246808510638298"; depth 235 ; known ; synonymous GL194476.1 samtools variation 113076 113076 . . . alleles " C G"; frequencies " 0.792982456140351 0.207017543859649"; depth 285 ; known ; synonymous GL194476.1 samtools variation 116229 116229 . . . alleles " C T"; frequencies " 0.25974025974026 0.74025974025974"; depth 77 ; known ; synonymous GL194476.1 samtools variation 155049 155049 . . . alleles " C T"; frequencies " 0.365986394557823 0.634013605442177"; depth 735 ; known ; synonymous GL194479.1 samtools variation 217315 217315 . . . alleles " C T"; frequencies " 0.489690721649485 0.510309278350515"; depth 194 ; unknown ; N/A GL194479.1 samtools variation 217372 217372 . . . alleles " A G"; frequencies " 0.450381679389313 0.549618320610687"; depth 131 ; unknown ; N/A GL194479.1 samtools variation 217507 217507 . . . alleles " C T"; frequencies " 0.523809523809524 0.476190476190476"; depth 42 ; unknown ; N/A GL194479.1 samtools variation 217516 217516 . . . alleles " C T"; frequencies " 0.365853658536585 0.634146341463415"; depth 41 ; known ; N/A GL194479.1 samtools variation 218966 218966 . . . alleles " A G"; frequencies " 0.524663677130045 0.475336322869955"; depth 223 ; unknown ; N/A GL194479.1 samtools variation 219429 219429 . . . alleles " A G"; frequencies " 0.557823129251701 0.442176870748299"; depth 147 ; unknown ; N/A GL194479.1 samtools variation 219832 219832 . . . alleles " C T"; frequencies " 0.483660130718954 0.516339869281046"; depth 153 ; unknown ; N/A GL194480.1 samtools variation 216114 216114 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL194486.1 samtools variation 37427 37427 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL194486.1 samtools variation 41648 41648 . . . alleles " T C"; frequencies " 0.476190476190476 0.523809523809524"; depth 63 ; known ; synonymous GL194487.1 samtools variation 74664 74664 . . . alleles " A G"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL194487.1 samtools variation 146866 146866 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; known ; non-synonymous GL194487.1 samtools variation 168143 168143 . . . alleles " T C"; frequencies " 0.423076923076923 0.576923076923077"; depth 52 ; known ; synonymous GL194487.1 samtools variation 208111 208111 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL194487.1 samtools variation 209704 209704 . . . alleles " T A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL194487.1 samtools variation 210154 210154 . . . alleles " T A"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; known ; N/A GL194487.1 samtools variation 210227 210227 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; known ; N/A GL194487.1 samtools variation 211396 211396 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 38 ; known ; N/A GL194487.1 samtools variation 211467 211467 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL194487.1 samtools variation 211485 211485 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL194487.1 samtools variation 212855 212855 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL194487.1 samtools variation 213433 213433 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL194487.1 samtools variation 213691 213691 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL194487.1 samtools variation 214599 214599 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL194487.1 samtools variation 219341 219341 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; N/A GL194495.1 samtools variation 169928 169928 . . . alleles " C T"; frequencies " 0.796116504854369 0.203883495145631"; depth 206 ; unknown ; synonymous GL194498.1 samtools variation 3779 3779 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL194498.1 samtools variation 51061 51061 . . . alleles " G A"; frequencies " 0.547169811320755 0.452830188679245"; depth 53 ; known ; N/A GL194498.1 samtools variation 52977 52977 . . . alleles " C T"; frequencies " 0.7312 0.2688"; depth 625 ; unknown ; N/A GL194498.1 samtools variation 53104 53104 . . . alleles " G A"; frequencies " 0.727868852459016 0.272131147540984"; depth 305 ; unknown ; N/A GL194498.1 samtools variation 54469 54469 . . . alleles " G A"; frequencies " 0.71841155234657 0.28158844765343"; depth 277 ; unknown ; N/A GL194498.1 samtools variation 55281 55281 . . . alleles " C G"; frequencies " 0.288888888888889 0.711111111111111"; depth 135 ; known ; N/A GL194498.1 samtools variation 55454 55454 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 99 ; unknown ; N/A GL194498.1 samtools variation 62649 62649 . . . alleles " A G"; frequencies " 0.635135135135135 0.364864864864865"; depth 592 ; unknown ; N/A GL194498.1 samtools variation 66097 66097 . . . alleles " C T"; frequencies " 0.756410256410256 0.243589743589744"; depth 78 ; unknown ; N/A GL194498.1 samtools variation 67258 67258 . . . alleles " C G"; frequencies " 0.694915254237288 0.305084745762712"; depth 59 ; unknown ; N/A GL194498.1 samtools variation 68581 68581 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL194498.1 samtools variation 74664 74664 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL194498.1 samtools variation 77950 77950 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL194498.1 samtools variation 139422 139422 . . . alleles " T C"; frequencies " 0.39622641509434 0.60377358490566"; depth 53 ; unknown ; N/A GL194498.1 samtools variation 209164 209164 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL194498.1 samtools variation 215200 215200 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL194498.1 samtools variation 215266 215266 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL194498.1 samtools variation 215319 215319 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL194498.1 samtools variation 215320 215320 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL194498.1 samtools variation 215375 215375 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL194498.1 samtools variation 215392 215392 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL194498.1 samtools variation 215532 215532 . . . alleles " T A"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL194498.1 samtools variation 215575 215575 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL194498.1 samtools variation 216818 216818 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL194499.1 samtools variation 100867 100867 . . . alleles " A C"; frequencies " 0.679035250463822 0.320964749536178"; depth 539 ; unknown ; N/A GL194499.1 samtools variation 100943 100943 . . . alleles " G A"; frequencies " 0.793577981651376 0.201834862385321"; depth 218 ; unknown ; N/A GL194499.1 samtools variation 144697 144697 . . . alleles " G A"; frequencies " 0.476673427991886 0.523326572008114"; depth 493 ; unknown ; N/A GL194499.1 samtools variation 145910 145910 . . . alleles " A G"; frequencies " 0.393700787401575 0.606299212598425"; depth 381 ; unknown ; synonymous GL194499.1 samtools variation 147543 147543 . . . alleles " G A"; frequencies " 0.7890625 0.2109375"; depth 256 ; unknown ; non-synonymous GL194499.1 samtools variation 147778 147778 . . . alleles " G A"; frequencies " 0.255813953488372 0.744186046511628"; depth 43 ; unknown ; N/A GL194501.1 samtools variation 34476 34476 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL194501.1 samtools variation 35616 35616 . . . alleles " A G"; frequencies " 0.4375 0.5625"; depth 48 ; unknown ; N/A GL194501.1 samtools variation 38500 38500 . . . alleles " G A"; frequencies " 0.70253164556962 0.29746835443038"; depth 158 ; unknown ; N/A GL194501.1 samtools variation 47296 47296 . . . alleles " C T"; frequencies " 0.340909090909091 0.659090909090909"; depth 88 ; unknown ; N/A GL194501.1 samtools variation 102507 102507 . . . alleles " G T"; frequencies " 0.549019607843137 0.450980392156863"; depth 102 ; unknown ; N/A GL194504.1 samtools variation 88573 88573 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL194504.1 samtools variation 96613 96613 . . . alleles " T C"; frequencies " 0.313253012048193 0.686746987951807"; depth 83 ; unknown ; synonymous GL194504.1 samtools variation 103669 103669 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL194504.1 samtools variation 109252 109252 . . . alleles " G A"; frequencies " 0.642105263157895 0.357894736842105"; depth 95 ; unknown ; synonymous GL194504.1 samtools variation 109332 109332 . . . alleles " G A"; frequencies " 0.623655913978495 0.376344086021505"; depth 93 ; unknown ; non-synonymous GL194504.1 samtools variation 116765 116765 . . . alleles " G A"; frequencies " 0.794871794871795 0.205128205128205"; depth 78 ; unknown ; synonymous GL194504.1 samtools variation 123730 123730 . . . alleles " A G"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; synonymous GL194504.1 samtools variation 189564 189564 . . . alleles " C T"; frequencies " 0.771929824561403 0.228070175438596"; depth 114 ; unknown ; N/A GL194506.1 samtools variation 44138 44138 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL194506.1 samtools variation 46356 46356 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 30 ; unknown ; N/A GL194506.1 samtools variation 46635 46635 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 57 ; unknown ; N/A GL194506.1 samtools variation 47381 47381 . . . alleles " A G"; frequencies " 0.216216216216216 0.783783783783784"; depth 37 ; unknown ; N/A GL194506.1 samtools variation 47914 47914 . . . alleles " A G"; frequencies " 0.78125 0.21875"; depth 32 ; known ; N/A GL194506.1 samtools variation 47934 47934 . . . alleles " T C"; frequencies " 0.351351351351351 0.648648648648649"; depth 37 ; unknown ; N/A GL194506.1 samtools variation 48059 48059 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL194506.1 samtools variation 48185 48185 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL194506.1 samtools variation 48357 48357 . . . alleles " A C"; frequencies " 0.388888888888889 0.611111111111111"; depth 36 ; unknown ; N/A GL194506.1 samtools variation 48680 48680 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL194506.1 samtools variation 51129 51129 . . . alleles " A C"; frequencies " 0.2 0.8"; depth 30 ; unknown ; N/A GL194506.1 samtools variation 53355 53355 . . . alleles " G A"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL194506.1 samtools variation 56090 56090 . . . alleles " A G"; frequencies " 0.675 0.325"; depth 120 ; known ; synonymous GL194506.1 samtools variation 56176 56176 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL194506.1 samtools variation 56904 56904 . . . alleles " T G"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL194506.1 samtools variation 56965 56965 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL194506.1 samtools variation 57532 57532 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL194506.1 samtools variation 57927 57927 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; known ; synonymous GL194506.1 samtools variation 146584 146584 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 48 ; known ; N/A GL194506.1 samtools variation 147407 147407 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL194506.1 samtools variation 147587 147587 . . . alleles " A G"; frequencies " 0.318181818181818 0.681818181818182"; depth 110 ; known ; N/A GL194506.1 samtools variation 149096 149096 . . . alleles " T A"; frequencies " 0.745762711864407 0.254237288135593"; depth 118 ; known ; N/A GL194506.1 samtools variation 149381 149381 . . . alleles " C A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL194506.1 samtools variation 149407 149407 . . . alleles " T C"; frequencies " 0.24 0.76"; depth 25 ; known ; N/A GL194506.1 samtools variation 150270 150270 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL194506.1 samtools variation 150552 150552 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL194506.1 samtools variation 153547 153547 . . . alleles " C G"; frequencies " 0.704035874439462 0.295964125560538"; depth 223 ; known ; N/A GL194506.1 samtools variation 153975 153975 . . . alleles " C T"; frequencies " 0.753623188405797 0.246376811594203"; depth 69 ; known ; N/A GL194506.1 samtools variation 154620 154620 . . . alleles " A T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL194506.1 samtools variation 154621 154621 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194506.1 samtools variation 154718 154718 . . . alleles " A T"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; known ; N/A GL194506.1 samtools variation 155475 155475 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL194506.1 samtools variation 156021 156021 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 20 ; known ; N/A GL194506.1 samtools variation 157539 157539 . . . alleles " T G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL194506.1 samtools variation 157718 157718 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL194506.1 samtools variation 157910 157910 . . . alleles " G C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL194506.1 samtools variation 157944 157944 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL194506.1 samtools variation 161095 161095 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL194506.1 samtools variation 161096 161096 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL194506.1 samtools variation 161163 161163 . . . alleles " G C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL194506.1 samtools variation 161573 161573 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL194506.1 samtools variation 161577 161577 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL194506.1 samtools variation 161985 161985 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL194506.1 samtools variation 162088 162088 . . . alleles " A G"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; known ; N/A GL194506.1 samtools variation 162237 162237 . . . alleles " T A"; frequencies " 0.525423728813559 0.474576271186441"; depth 59 ; known ; N/A GL194506.1 samtools variation 162347 162347 . . . alleles " A C"; frequencies " 0.547169811320755 0.452830188679245"; depth 53 ; unknown ; N/A GL194506.1 samtools variation 165017 165017 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL194507.1 samtools variation 64549 64549 . . . alleles " G A"; frequencies " 0.796875 0.203125"; depth 64 ; unknown ; N/A GL194507.1 samtools variation 66784 66784 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL194507.1 samtools variation 70599 70599 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; synonymous GL194507.1 samtools variation 97700 97700 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL194507.1 samtools variation 113920 113920 . . . alleles " G T"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; synonymous GL194508.1 samtools variation 19647 19647 . . . alleles " C A"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL194512.1 samtools variation 52811 52811 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL194512.1 samtools variation 123249 123249 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 46 ; unknown ; synonymous GL194524.1 samtools variation 72378 72378 . . . alleles " C A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL194524.1 samtools variation 72693 72693 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL194524.1 samtools variation 73028 73028 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 25 ; unknown ; synonymous GL194524.1 samtools variation 80502 80502 . . . alleles " T C"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; N/A GL194524.1 samtools variation 80753 80753 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL194524.1 samtools variation 83943 83943 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 36 ; known ; N/A GL194524.1 samtools variation 89247 89247 . . . alleles " T G"; frequencies " 0.485714285714286 0.514285714285714"; depth 70 ; known ; non-synonymous GL194524.1 samtools variation 112383 112383 . . . alleles " C G"; frequencies " 0.538461538461538 0.384615384615385"; depth 13 ; known ; N/A GL194524.1 samtools variation 187822 187822 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL194531.1 samtools variation 77900 77900 . . . alleles " C A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194534.1 samtools variation 139866 139866 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194534.1 samtools variation 139943 139943 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL194538.1 samtools variation 127073 127073 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL194538.1 samtools variation 130902 130902 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL194538.1 samtools variation 184269 184269 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL194539.1 samtools variation 165926 165926 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL194539.1 samtools variation 167409 167409 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL194539.1 samtools variation 169051 169051 . . . alleles " A G"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL194539.1 samtools variation 169091 169091 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 42 ; unknown ; N/A GL194539.1 samtools variation 169967 169967 . . . alleles " C T"; frequencies " 0.479452054794521 0.520547945205479"; depth 73 ; unknown ; N/A GL194539.1 samtools variation 172701 172701 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL194539.1 samtools variation 175097 175097 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL194541.1 samtools variation 3531 3531 . . . alleles " A T"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; unknown ; N/A GL194541.1 samtools variation 3696 3696 . . . alleles " G T"; frequencies " 0.366666666666667 0.633333333333333"; depth 60 ; unknown ; N/A GL194541.1 samtools variation 7547 7547 . . . alleles " C T"; frequencies " 0.610837438423645 0.389162561576355"; depth 203 ; unknown ; non-synonymous GL194541.1 samtools variation 7573 7573 . . . alleles " C T"; frequencies " 0.559090909090909 0.440909090909091"; depth 220 ; unknown ; synonymous GL194541.1 samtools variation 7612 7612 . . . alleles " C T"; frequencies " 0.545 0.455"; depth 200 ; unknown ; synonymous GL194541.1 samtools variation 7721 7721 . . . alleles " C A"; frequencies " 0.346153846153846 0.653846153846154"; depth 78 ; unknown ; N/A GL194541.1 samtools variation 98895 98895 . . . alleles " C G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL194541.1 samtools variation 99196 99196 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194541.1 samtools variation 100114 100114 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL194541.1 samtools variation 100518 100518 . . . alleles " G C"; frequencies " 0.51063829787234 0.48936170212766"; depth 47 ; unknown ; N/A GL194541.1 samtools variation 101567 101567 . . . alleles " C G"; frequencies " 0.658227848101266 0.341772151898734"; depth 79 ; unknown ; N/A GL194541.1 samtools variation 101704 101704 . . . alleles " C G"; frequencies " 0.736842105263158 0.263157894736842"; depth 76 ; unknown ; N/A GL194541.1 samtools variation 101744 101744 . . . alleles " T C"; frequencies " 0.76271186440678 0.23728813559322"; depth 118 ; unknown ; N/A GL194541.1 samtools variation 101760 101760 . . . alleles " A G"; frequencies " 0.641221374045801 0.358778625954198"; depth 131 ; unknown ; N/A GL194541.1 samtools variation 103719 103719 . . . alleles " A G"; frequencies " 0.509803921568627 0.490196078431373"; depth 51 ; known ; N/A GL194541.1 samtools variation 128979 128979 . . . alleles " A G"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL194541.1 samtools variation 129210 129210 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL194544.1 samtools variation 183447 183447 . . . alleles " T G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; non-synonymous GL194547.1 samtools variation 72531 72531 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL194547.1 samtools variation 126658 126658 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; known ; synonymous GL194547.1 samtools variation 137591 137591 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL194547.1 samtools variation 139531 139531 . . . alleles " G C"; frequencies " 0.2 0.8"; depth 55 ; known ; N/A GL194547.1 samtools variation 168596 168596 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194551.1 samtools variation 33124 33124 . . . alleles " C G"; frequencies " 0.392405063291139 0.607594936708861"; depth 237 ; unknown ; N/A GL194552.1 samtools variation 152299 152299 . . . alleles " G C"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; known ; synonymous GL194552.1 samtools variation 152338 152338 . . . alleles " G T"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; non-synonymous GL194552.1 samtools variation 152339 152339 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; non-synonymous GL194552.1 samtools variation 165996 165996 . . . alleles " C T"; frequencies " 0.417322834645669 0.582677165354331"; depth 508 ; unknown ; synonymous GL194552.1 samtools variation 166733 166733 . . . alleles " C A"; frequencies " 0.55956678700361 0.44043321299639"; depth 277 ; unknown ; non-synonymous GL194552.1 samtools variation 167575 167575 . . . alleles " G A"; frequencies " 0.621917808219178 0.378082191780822"; depth 365 ; unknown ; N/A GL194552.1 samtools variation 184947 184947 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL194552.1 samtools variation 184968 184968 . . . alleles " C T"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL194552.1 samtools variation 185668 185668 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL194557.1 samtools variation 9276 9276 . . . alleles " G A"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; known ; synonymous GL194557.1 samtools variation 99565 99565 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194557.1 samtools variation 104470 104470 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL194557.1 samtools variation 104527 104527 . . . alleles " A C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL194557.1 samtools variation 105300 105300 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL194557.1 samtools variation 105451 105451 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL194557.1 samtools variation 105464 105464 . . . alleles " C G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL194557.1 samtools variation 105727 105727 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL194557.1 samtools variation 106469 106469 . . . alleles " A G"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; known ; N/A GL194557.1 samtools variation 106571 106571 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL194557.1 samtools variation 141408 141408 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 35 ; known ; N/A GL194557.1 samtools variation 143180 143180 . . . alleles " C T"; frequencies " 0.796610169491525 0.203389830508475"; depth 59 ; known ; N/A GL194557.1 samtools variation 143205 143205 . . . alleles " C T"; frequencies " 0.795918367346939 0.204081632653061"; depth 49 ; unknown ; N/A GL194557.1 samtools variation 143704 143704 . . . alleles " T C"; frequencies " 0.730061349693252 0.269938650306748"; depth 163 ; unknown ; synonymous GL194557.1 samtools variation 144712 144712 . . . alleles " C A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194557.1 samtools variation 147757 147757 . . . alleles " T C"; frequencies " 0.758333333333333 0.241666666666667"; depth 240 ; unknown ; N/A GL194557.1 samtools variation 147845 147845 . . . alleles " T C"; frequencies " 0.731481481481482 0.268518518518519"; depth 108 ; unknown ; N/A GL194557.1 samtools variation 148181 148181 . . . alleles " T C"; frequencies " 0.672727272727273 0.327272727272727"; depth 110 ; unknown ; N/A GL194557.1 samtools variation 148343 148343 . . . alleles " C T"; frequencies " 0.735294117647059 0.264705882352941"; depth 170 ; unknown ; N/A GL194557.1 samtools variation 148759 148759 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 70 ; unknown ; N/A GL194557.1 samtools variation 148770 148770 . . . alleles " G A"; frequencies " 0.7625 0.2375"; depth 80 ; unknown ; N/A GL194557.1 samtools variation 148923 148923 . . . alleles " C T"; frequencies " 0.643564356435644 0.356435643564356"; depth 101 ; unknown ; N/A GL194557.1 samtools variation 149263 149263 . . . alleles " G T"; frequencies " 0.654545454545455 0.345454545454545"; depth 110 ; unknown ; N/A GL194557.1 samtools variation 150922 150922 . . . alleles " G A"; frequencies " 0.736111111111111 0.263888888888889"; depth 72 ; unknown ; N/A GL194557.1 samtools variation 151044 151044 . . . alleles " C T"; frequencies " 0.723404255319149 0.276595744680851"; depth 47 ; known ; N/A GL194557.1 samtools variation 151184 151184 . . . alleles " G C"; frequencies " 0.745454545454545 0.254545454545455"; depth 55 ; unknown ; N/A GL194557.1 samtools variation 154400 154400 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; synonymous GL194559.1 samtools variation 12374 12374 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; synonymous GL194559.1 samtools variation 13349 13349 . . . alleles " A G"; frequencies " 0.729032258064516 0.270967741935484"; depth 155 ; known ; synonymous GL194562.1 samtools variation 133675 133675 . . . alleles " C A"; frequencies " 0.642857142857143 0.357142857142857"; depth 56 ; known ; non-synonymous GL194563.1 samtools variation 107593 107593 . . . alleles " G A"; frequencies " 0.689189189189189 0.310810810810811"; depth 74 ; unknown ; N/A GL194565.1 samtools variation 161514 161514 . . . alleles " C G"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; known ; non-synonymous GL194566.1 samtools variation 83408 83408 . . . alleles " C T"; frequencies " 0.521739130434783 0.434782608695652"; depth 23 ; unknown ; non-synonymous GL194569.1 samtools variation 8152 8152 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL194569.1 samtools variation 8159 8159 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL194569.1 samtools variation 28225 28225 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL194569.1 samtools variation 130580 130580 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL194569.1 samtools variation 152841 152841 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; non-synonymous GL194569.1 samtools variation 191846 191846 . . . alleles " A G"; frequencies " 0.520754716981132 0.479245283018868"; depth 530 ; unknown ; N/A GL194569.1 samtools variation 191989 191989 . . . alleles " C G"; frequencies " 0.316455696202532 0.683544303797468"; depth 395 ; unknown ; N/A GL194569.1 samtools variation 192217 192217 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL194569.1 samtools variation 192283 192283 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL194573.1 samtools variation 76785 76785 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL194573.1 samtools variation 98079 98079 . . . alleles " G T"; frequencies " 0.407894736842105 0.592105263157895"; depth 76 ; unknown ; non-synonymous GL194573.1 samtools variation 173678 173678 . . . alleles " G A"; frequencies " 0.302325581395349 0.697674418604651"; depth 43 ; unknown ; non-synonymous GL194580.1 samtools variation 3837 3837 . . . alleles " C A"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; non-synonymous GL194580.1 samtools variation 8232 8232 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL194580.1 samtools variation 90982 90982 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL194580.1 samtools variation 155142 155142 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 78 ; unknown ; N/A GL194580.1 samtools variation 155163 155163 . . . alleles " G T"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL194580.1 samtools variation 163663 163663 . . . alleles " A G"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL194585.1 samtools variation 37866 37866 . . . alleles " A C"; frequencies " 0.607142857142857 0.392857142857143"; depth 84 ; known ; N/A GL194585.1 samtools variation 39846 39846 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL194585.1 samtools variation 78777 78777 . . . alleles " G A"; frequencies " 0.659340659340659 0.340659340659341"; depth 91 ; unknown ; synonymous GL194585.1 samtools variation 78869 78869 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 180 ; unknown ; synonymous GL194585.1 samtools variation 79436 79436 . . . alleles " A C"; frequencies " 0.759776536312849 0.240223463687151"; depth 179 ; unknown ; non-synonymous GL194585.1 samtools variation 122222 122222 . . . alleles " G A"; frequencies " 0.552941176470588 0.447058823529412"; depth 170 ; unknown ; non-synonymous GL194585.1 samtools variation 122226 122226 . . . alleles " T A"; frequencies " 0.560693641618497 0.439306358381503"; depth 173 ; unknown ; non-synonymous GL194585.1 samtools variation 159834 159834 . . . alleles " A G"; frequencies " 0.348684210526316 0.651315789473684"; depth 152 ; known ; N/A GL194585.1 samtools variation 162469 162469 . . . alleles " T A"; frequencies " 0.468503937007874 0.531496062992126"; depth 254 ; known ; N/A GL194585.1 samtools variation 172334 172334 . . . alleles " A G"; frequencies " 0.280701754385965 0.719298245614035"; depth 57 ; unknown ; N/A GL194585.1 samtools variation 172335 172335 . . . alleles " A G"; frequencies " 0.267857142857143 0.732142857142857"; depth 56 ; unknown ; N/A GL194587.1 samtools variation 148682 148682 . . . alleles " A C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL194589.1 samtools variation 6832 6832 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194589.1 samtools variation 55967 55967 . . . alleles " T A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194589.1 samtools variation 66244 66244 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL194589.1 samtools variation 68526 68526 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; unknown ; N/A GL194589.1 samtools variation 68535 68535 . . . alleles " C G"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; unknown ; N/A GL194589.1 samtools variation 69037 69037 . . . alleles " G A"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL194589.1 samtools variation 69051 69051 . . . alleles " C G"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL194589.1 samtools variation 72193 72193 . . . alleles " C G"; frequencies " 0.284263959390863 0.715736040609137"; depth 197 ; unknown ; non-synonymous GL194589.1 samtools variation 72286 72286 . . . alleles " G A"; frequencies " 0.280487804878049 0.719512195121951"; depth 164 ; unknown ; synonymous GL194589.1 samtools variation 72391 72391 . . . alleles " A G"; frequencies " 0.275862068965517 0.724137931034483"; depth 58 ; unknown ; synonymous GL194589.1 samtools variation 89169 89169 . . . alleles " T A"; frequencies " 0.450704225352113 0.549295774647887"; depth 71 ; unknown ; N/A GL194589.1 samtools variation 89304 89304 . . . alleles " C A"; frequencies " 0.582677165354331 0.417322834645669"; depth 127 ; unknown ; N/A GL194589.1 samtools variation 89544 89544 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 50 ; unknown ; N/A GL194589.1 samtools variation 91507 91507 . . . alleles " C A"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL194589.1 samtools variation 94008 94008 . . . alleles " T A"; frequencies " 0.549019607843137 0.450980392156863"; depth 51 ; unknown ; N/A GL194589.1 samtools variation 96723 96723 . . . alleles " C A"; frequencies " 0.569620253164557 0.430379746835443"; depth 79 ; unknown ; N/A GL194589.1 samtools variation 97131 97131 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 51 ; unknown ; N/A GL194589.1 samtools variation 97240 97240 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL194589.1 samtools variation 97422 97422 . . . alleles " G T"; frequencies " 0.475409836065574 0.524590163934426"; depth 61 ; unknown ; N/A GL194589.1 samtools variation 97482 97482 . . . alleles " C G"; frequencies " 0.306666666666667 0.693333333333333"; depth 75 ; unknown ; N/A GL194589.1 samtools variation 97557 97557 . . . alleles " C T"; frequencies " 0.79746835443038 0.20253164556962"; depth 79 ; unknown ; N/A GL194589.1 samtools variation 97615 97615 . . . alleles " T C"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; unknown ; N/A GL194589.1 samtools variation 97760 97760 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194589.1 samtools variation 97975 97975 . . . alleles " A G"; frequencies " 0.328767123287671 0.671232876712329"; depth 146 ; unknown ; non-synonymous GL194589.1 samtools variation 98148 98148 . . . alleles " A G"; frequencies " 0.401515151515151 0.598484848484849"; depth 132 ; unknown ; N/A GL194589.1 samtools variation 98180 98180 . . . alleles " A G"; frequencies " 0.436507936507937 0.563492063492063"; depth 126 ; unknown ; N/A GL194589.1 samtools variation 98251 98251 . . . alleles " C G"; frequencies " 0.452991452991453 0.547008547008547"; depth 117 ; unknown ; N/A GL194589.1 samtools variation 98260 98260 . . . alleles " A G"; frequencies " 0.372727272727273 0.627272727272727"; depth 110 ; unknown ; N/A GL194589.1 samtools variation 98737 98737 . . . alleles " C T"; frequencies " 0.273684210526316 0.726315789473684"; depth 190 ; unknown ; N/A GL194589.1 samtools variation 99413 99413 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 145 ; unknown ; N/A GL194589.1 samtools variation 100408 100408 . . . alleles " C T"; frequencies " 0.677966101694915 0.322033898305085"; depth 118 ; unknown ; N/A GL194589.1 samtools variation 100684 100684 . . . alleles " G A"; frequencies " 0.299065420560748 0.700934579439252"; depth 107 ; unknown ; N/A GL194589.1 samtools variation 100775 100775 . . . alleles " T A"; frequencies " 0.71969696969697 0.28030303030303"; depth 132 ; unknown ; N/A GL194589.1 samtools variation 101021 101021 . . . alleles " T G"; frequencies " 0.446601941747573 0.553398058252427"; depth 206 ; unknown ; N/A GL194589.1 samtools variation 101022 101022 . . . alleles " T G"; frequencies " 0.445544554455446 0.554455445544555"; depth 202 ; unknown ; N/A GL194589.1 samtools variation 101126 101126 . . . alleles " A G"; frequencies " 0.20253164556962 0.79746835443038"; depth 79 ; unknown ; N/A GL194589.1 samtools variation 101403 101403 . . . alleles " C G"; frequencies " 0.614035087719298 0.385964912280702"; depth 57 ; unknown ; N/A GL194589.1 samtools variation 101732 101732 . . . alleles " A G"; frequencies " 0.550802139037433 0.449197860962567"; depth 187 ; unknown ; N/A GL194589.1 samtools variation 101765 101765 . . . alleles " C A"; frequencies " 0.528205128205128 0.471794871794872"; depth 195 ; unknown ; N/A GL194589.1 samtools variation 101927 101927 . . . alleles " A G"; frequencies " 0.783333333333333 0.216666666666667"; depth 180 ; unknown ; N/A GL194589.1 samtools variation 101953 101953 . . . alleles " C T"; frequencies " 0.755725190839695 0.244274809160305"; depth 131 ; unknown ; N/A GL194589.1 samtools variation 102168 102168 . . . alleles " T G"; frequencies " 0.27536231884058 0.72463768115942"; depth 69 ; unknown ; N/A GL194589.1 samtools variation 102281 102281 . . . alleles " G A"; frequencies " 0.464150943396226 0.535849056603774"; depth 265 ; unknown ; N/A GL194589.1 samtools variation 102314 102314 . . . alleles " C T"; frequencies " 0.71830985915493 0.28169014084507"; depth 426 ; unknown ; N/A GL194589.1 samtools variation 102522 102522 . . . alleles " T A"; frequencies " 0.695238095238095 0.304761904761905"; depth 210 ; unknown ; N/A GL194589.1 samtools variation 102657 102657 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; unknown ; N/A GL194589.1 samtools variation 102685 102685 . . . alleles " G A"; frequencies " 0.2 0.8"; depth 20 ; unknown ; N/A GL194589.1 samtools variation 102977 102977 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL194589.1 samtools variation 103237 103237 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL194589.1 samtools variation 105134 105134 . . . alleles " G C"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL194589.1 samtools variation 107879 107879 . . . alleles " G T"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL194589.1 samtools variation 108110 108110 . . . alleles " G C"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL194589.1 samtools variation 110684 110684 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL194589.1 samtools variation 110696 110696 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL194589.1 samtools variation 110787 110787 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL194589.1 samtools variation 110869 110869 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL194589.1 samtools variation 118221 118221 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL194590.1 samtools variation 38671 38671 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL194590.1 samtools variation 40709 40709 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194590.1 samtools variation 41136 41136 . . . alleles " C T"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL194590.1 samtools variation 41232 41232 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL194591.1 samtools variation 53806 53806 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL194592.1 samtools variation 16648 16648 . . . alleles " G A"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL194592.1 samtools variation 70815 70815 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 22 ; known ; N/A GL194592.1 samtools variation 77122 77122 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL194592.1 samtools variation 83257 83257 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL194592.1 samtools variation 84076 84076 . . . alleles " G C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL194592.1 samtools variation 84314 84314 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL194592.1 samtools variation 84795 84795 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL194592.1 samtools variation 85171 85171 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL194592.1 samtools variation 85347 85347 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL194592.1 samtools variation 86552 86552 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL194592.1 samtools variation 90277 90277 . . . alleles " C T"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL194592.1 samtools variation 98097 98097 . . . alleles " C T"; frequencies " 0.795454545454545 0.204545454545455"; depth 88 ; unknown ; synonymous GL194592.1 samtools variation 99351 99351 . . . alleles " G A"; frequencies " 0.572815533980582 0.41747572815534"; depth 103 ; unknown ; synonymous GL194592.1 samtools variation 100615 100615 . . . alleles " T C"; frequencies " 0.383495145631068 0.611650485436893"; depth 206 ; unknown ; non-synonymous GL194592.1 samtools variation 101362 101362 . . . alleles " G A"; frequencies " 0.637795275590551 0.362204724409449"; depth 127 ; unknown ; synonymous GL194592.1 samtools variation 101584 101584 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL194592.1 samtools variation 102415 102415 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL194592.1 samtools variation 105068 105068 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 46 ; unknown ; synonymous GL194592.1 samtools variation 116714 116714 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194592.1 samtools variation 173689 173689 . . . alleles " A G"; frequencies " 0.481818181818182 0.518181818181818"; depth 110 ; unknown ; N/A GL194595.1 samtools variation 115223 115223 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL194595.1 samtools variation 115716 115716 . . . alleles " C A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL194595.1 samtools variation 116192 116192 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL194595.1 samtools variation 116822 116822 . . . alleles " G A"; frequencies " 0.490909090909091 0.509090909090909"; depth 55 ; known ; N/A GL194595.1 samtools variation 119743 119743 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 39 ; known ; N/A GL194595.1 samtools variation 119772 119772 . . . alleles " T C"; frequencies " 0.396825396825397 0.603174603174603"; depth 63 ; known ; N/A GL194595.1 samtools variation 119832 119832 . . . alleles " G A"; frequencies " 0.690140845070423 0.309859154929577"; depth 71 ; known ; N/A GL194595.1 samtools variation 120079 120079 . . . alleles " T C"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; known ; N/A GL194595.1 samtools variation 120200 120200 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; known ; N/A GL194595.1 samtools variation 121025 121025 . . . alleles " G A"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; known ; N/A GL194595.1 samtools variation 168282 168282 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 39 ; unknown ; N/A GL194595.1 samtools variation 168348 168348 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL194596.1 samtools variation 148866 148866 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL194596.1 samtools variation 149525 149525 . . . alleles " C G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL194596.1 samtools variation 149809 149809 . . . alleles " T C"; frequencies " 0.656716417910448 0.343283582089552"; depth 67 ; unknown ; N/A GL194596.1 samtools variation 149916 149916 . . . alleles " A T"; frequencies " 0.69811320754717 0.30188679245283"; depth 53 ; known ; N/A GL194596.1 samtools variation 158413 158413 . . . alleles " C A"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; known ; N/A GL194596.1 samtools variation 163273 163273 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL194596.1 samtools variation 163325 163325 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL194596.1 samtools variation 163329 163329 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL194596.1 samtools variation 164120 164120 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL194597.1 samtools variation 20489 20489 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL194597.1 samtools variation 20683 20683 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; known ; N/A GL194597.1 samtools variation 25112 25112 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL194597.1 samtools variation 76923 76923 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 32 ; known ; N/A GL194599.1 samtools variation 39666 39666 . . . alleles " A G"; frequencies " 0.742138364779874 0.257861635220126"; depth 159 ; known ; non-synonymous GL194599.1 samtools variation 125329 125329 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 350 ; known ; N/A GL194599.1 samtools variation 126165 126165 . . . alleles " A G"; frequencies " 0.643243243243243 0.356756756756757"; depth 185 ; known ; N/A GL194599.1 samtools variation 127865 127865 . . . alleles " G A"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; known ; N/A GL194599.1 samtools variation 128189 128189 . . . alleles " T G"; frequencies " 0.36875 0.63125"; depth 160 ; known ; N/A GL194604.1 samtools variation 2422 2422 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL194604.1 samtools variation 3978 3978 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; known ; N/A GL194604.1 samtools variation 10880 10880 . . . alleles " A C"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; known ; N/A GL194604.1 samtools variation 20679 20679 . . . alleles " C A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL194604.1 samtools variation 25137 25137 . . . alleles " T A"; frequencies " 0.210526315789474 0.789473684210526"; depth 57 ; known ; N/A GL194604.1 samtools variation 29698 29698 . . . alleles " T G"; frequencies " 0.271604938271605 0.728395061728395"; depth 81 ; known ; N/A GL194604.1 samtools variation 31705 31705 . . . alleles " C T"; frequencies " 0.39344262295082 0.60655737704918"; depth 61 ; known ; N/A GL194606.1 samtools variation 178367 178367 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL194612.1 samtools variation 46603 46603 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194612.1 samtools variation 52426 52426 . . . alleles " T C"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; known ; N/A GL194612.1 samtools variation 54252 54252 . . . alleles " G A"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL194613.1 samtools variation 56768 56768 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194613.1 samtools variation 76481 76481 . . . alleles " C T"; frequencies " 0.516393442622951 0.483606557377049"; depth 244 ; known ; N/A GL194613.1 samtools variation 76740 76740 . . . alleles " G A"; frequencies " 0.668789808917197 0.331210191082803"; depth 157 ; known ; N/A GL194613.1 samtools variation 76749 76749 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 143 ; known ; N/A GL194613.1 samtools variation 76927 76927 . . . alleles " T C"; frequencies " 0.623529411764706 0.376470588235294"; depth 170 ; known ; N/A GL194613.1 samtools variation 77287 77287 . . . alleles " C T"; frequencies " 0.789237668161435 0.210762331838565"; depth 223 ; unknown ; N/A GL194613.1 samtools variation 77627 77627 . . . alleles " G T"; frequencies " 0.745098039215686 0.254901960784314"; depth 102 ; unknown ; N/A GL194613.1 samtools variation 77781 77781 . . . alleles " G A"; frequencies " 0.655172413793103 0.344827586206897"; depth 174 ; known ; N/A GL194613.1 samtools variation 77872 77872 . . . alleles " T A"; frequencies " 0.510489510489511 0.48951048951049"; depth 143 ; known ; N/A GL194613.1 samtools variation 78208 78208 . . . alleles " A G"; frequencies " 0.536842105263158 0.463157894736842"; depth 95 ; known ; N/A GL194613.1 samtools variation 79448 79448 . . . alleles " G C"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; unknown ; N/A GL194613.1 samtools variation 80216 80216 . . . alleles " C T"; frequencies " 0.630434782608696 0.369565217391304"; depth 46 ; unknown ; N/A GL194613.1 samtools variation 80414 80414 . . . alleles " G A"; frequencies " 0.520833333333333 0.479166666666667"; depth 96 ; unknown ; N/A GL194613.1 samtools variation 80701 80701 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; known ; N/A GL194613.1 samtools variation 80785 80785 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 51 ; unknown ; N/A GL194613.1 samtools variation 82714 82714 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL194613.1 samtools variation 82951 82951 . . . alleles " G A"; frequencies " 0.238805970149254 0.761194029850746"; depth 67 ; known ; N/A GL194613.1 samtools variation 82976 82976 . . . alleles " T C"; frequencies " 0.546511627906977 0.453488372093023"; depth 86 ; known ; N/A GL194613.1 samtools variation 83395 83395 . . . alleles " G A"; frequencies " 0.543859649122807 0.456140350877193"; depth 57 ; unknown ; N/A GL194613.1 samtools variation 83653 83653 . . . alleles " T A"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; unknown ; N/A GL194613.1 samtools variation 85900 85900 . . . alleles " G T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL194613.1 samtools variation 85901 85901 . . . alleles " G T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL194613.1 samtools variation 86023 86023 . . . alleles " A C"; frequencies " 0.225 0.775"; depth 40 ; known ; N/A GL194613.1 samtools variation 86203 86203 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 96 ; known ; N/A GL194613.1 samtools variation 86406 86406 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 56 ; known ; N/A GL194613.1 samtools variation 89807 89807 . . . alleles " T C"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; known ; N/A GL194613.1 samtools variation 90835 90835 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; known ; N/A GL194613.1 samtools variation 93897 93897 . . . alleles " C A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL194613.1 samtools variation 94052 94052 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL194613.1 samtools variation 115629 115629 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL194613.1 samtools variation 115655 115655 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL194613.1 samtools variation 116051 116051 . . . alleles " T C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL194613.1 samtools variation 116183 116183 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL194613.1 samtools variation 127935 127935 . . . alleles " G A"; frequencies " 0.776699029126214 0.223300970873786"; depth 103 ; unknown ; synonymous GL194613.1 samtools variation 143793 143793 . . . alleles " A C"; frequencies " 0.349081364829396 0.650918635170604"; depth 381 ; unknown ; N/A GL194613.1 samtools variation 144522 144522 . . . alleles " G A"; frequencies " 0.745833333333333 0.254166666666667"; depth 240 ; unknown ; N/A GL194613.1 samtools variation 145174 145174 . . . alleles " C T"; frequencies " 0.572327044025157 0.427672955974843"; depth 318 ; unknown ; synonymous GL194613.1 samtools variation 145763 145763 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 48 ; unknown ; N/A GL194613.1 samtools variation 146011 146011 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 90 ; unknown ; N/A GL194613.1 samtools variation 146249 146249 . . . alleles " C T"; frequencies " 0.697560975609756 0.302439024390244"; depth 205 ; unknown ; N/A GL194613.1 samtools variation 147050 147050 . . . alleles " C T"; frequencies " 0.451505016722408 0.548494983277592"; depth 299 ; unknown ; synonymous GL194613.1 samtools variation 147663 147663 . . . alleles " T C"; frequencies " 0.432098765432099 0.567901234567901"; depth 81 ; unknown ; N/A GL194613.1 samtools variation 147888 147888 . . . alleles " A G"; frequencies " 0.354609929078014 0.645390070921986"; depth 141 ; unknown ; N/A GL194613.1 samtools variation 148682 148682 . . . alleles " T C"; frequencies " 0.700934579439252 0.299065420560748"; depth 214 ; unknown ; non-synonymous GL194613.1 samtools variation 148683 148683 . . . alleles " G A"; frequencies " 0.69047619047619 0.30952380952381"; depth 210 ; unknown ; synonymous GL194613.1 samtools variation 159812 159812 . . . alleles " C T"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; unknown ; N/A GL194613.1 samtools variation 159838 159838 . . . alleles " T C"; frequencies " 0.573770491803279 0.426229508196721"; depth 61 ; unknown ; N/A GL194613.1 samtools variation 159982 159982 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL194613.1 samtools variation 170457 170457 . . . alleles " T C"; frequencies " 0.558441558441558 0.441558441558442"; depth 77 ; unknown ; N/A GL194613.1 samtools variation 170811 170811 . . . alleles " T C"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL194613.1 samtools variation 171204 171204 . . . alleles " T C"; frequencies " 0.390909090909091 0.609090909090909"; depth 110 ; unknown ; N/A GL194613.1 samtools variation 171586 171586 . . . alleles " C T"; frequencies " 0.775510204081633 0.224489795918367"; depth 49 ; unknown ; N/A GL194613.1 samtools variation 171813 171813 . . . alleles " C A"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; N/A GL194613.1 samtools variation 172089 172089 . . . alleles " T G"; frequencies " 0.671641791044776 0.328358208955224"; depth 201 ; unknown ; N/A GL194613.1 samtools variation 172239 172239 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL194613.1 samtools variation 172522 172522 . . . alleles " T A"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL194613.1 samtools variation 173155 173155 . . . alleles " T C"; frequencies " 0.324074074074074 0.675925925925926"; depth 108 ; unknown ; N/A GL194613.1 samtools variation 175080 175080 . . . alleles " G A"; frequencies " 0.54978354978355 0.45021645021645"; depth 231 ; unknown ; N/A GL194613.1 samtools variation 175103 175103 . . . alleles " T C"; frequencies " 0.541666666666667 0.458333333333333"; depth 144 ; unknown ; N/A GL194613.1 samtools variation 175298 175298 . . . alleles " C T"; frequencies " 0.218954248366013 0.777777777777778"; depth 306 ; unknown ; N/A GL194613.1 samtools variation 175879 175879 . . . alleles " T C"; frequencies " 0.488505747126437 0.511494252873563"; depth 174 ; unknown ; N/A GL194613.1 samtools variation 177339 177339 . . . alleles " A C"; frequencies " 0.51031894934334 0.48968105065666"; depth 533 ; unknown ; N/A GL194613.1 samtools variation 177381 177381 . . . alleles " G C"; frequencies " 0.328877005347594 0.671122994652406"; depth 374 ; unknown ; N/A GL194613.1 samtools variation 177679 177679 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL194613.1 samtools variation 177932 177932 . . . alleles " A G"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL194613.1 samtools variation 177995 177995 . . . alleles " T C"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL194613.1 samtools variation 178784 178784 . . . alleles " A G"; frequencies " 0.255913978494624 0.744086021505376"; depth 465 ; unknown ; N/A GL194613.1 samtools variation 178864 178864 . . . alleles " C T"; frequencies " 0.771561771561772 0.228438228438228"; depth 429 ; unknown ; N/A GL194613.1 samtools variation 179887 179887 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 48 ; unknown ; N/A GL194616.1 samtools variation 72461 72461 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 110 ; known ; N/A GL194616.1 samtools variation 93040 93040 . . . alleles " G A"; frequencies " 0.56636553161918 0.432939541348158"; depth 2878 ; known ; synonymous GL194616.1 samtools variation 94687 94687 . . . alleles " C T"; frequencies " 0.633409610983982 0.366590389016018"; depth 2185 ; known ; N/A GL194616.1 samtools variation 155036 155036 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 24 ; known ; non-synonymous GL194617.1 samtools variation 135789 135789 . . . alleles " G A"; frequencies " 0.547169811320755 0.452830188679245"; depth 53 ; unknown ; synonymous GL194617.1 samtools variation 136933 136933 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 72 ; unknown ; N/A GL194617.1 samtools variation 139199 139199 . . . alleles " A G"; frequencies " 0.484126984126984 0.515873015873016"; depth 378 ; unknown ; synonymous GL194617.1 samtools variation 149957 149957 . . . alleles " C T"; frequencies " 0.449152542372881 0.550847457627119"; depth 118 ; unknown ; non-synonymous GL194617.1 samtools variation 150151 150151 . . . alleles " G C"; frequencies " 0.736842105263158 0.263157894736842"; depth 152 ; unknown ; synonymous GL194617.1 samtools variation 150935 150935 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 105 ; unknown ; non-synonymous GL194617.1 samtools variation 151031 151031 . . . alleles " G A"; frequencies " 0.467889908256881 0.532110091743119"; depth 218 ; unknown ; non-synonymous GL194617.1 samtools variation 154820 154820 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL194617.1 samtools variation 156543 156543 . . . alleles " A G"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL194617.1 samtools variation 157049 157049 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL194617.1 samtools variation 157533 157533 . . . alleles " G T"; frequencies " 0.609756097560976 0.390243902439024"; depth 205 ; unknown ; non-synonymous GL194617.1 samtools variation 157789 157789 . . . alleles " A G"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; N/A GL194617.1 samtools variation 157845 157845 . . . alleles " C T"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; unknown ; N/A GL194617.1 samtools variation 160986 160986 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 50 ; unknown ; N/A GL194617.1 samtools variation 162123 162123 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL194617.1 samtools variation 163378 163378 . . . alleles " C T"; frequencies " 0.751295336787565 0.248704663212435"; depth 193 ; unknown ; synonymous GL194617.1 samtools variation 166603 166603 . . . alleles " G A"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; unknown ; N/A GL194617.1 samtools variation 166694 166694 . . . alleles " A G"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL194617.1 samtools variation 166807 166807 . . . alleles " A G"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL194617.1 samtools variation 167325 167325 . . . alleles " G A"; frequencies " 0.574074074074074 0.425925925925926"; depth 54 ; unknown ; N/A GL194617.1 samtools variation 167403 167403 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 40 ; unknown ; N/A GL194617.1 samtools variation 168511 168511 . . . alleles " C A"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; N/A GL194617.1 samtools variation 168517 168517 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; unknown ; N/A GL194617.1 samtools variation 168742 168742 . . . alleles " T C"; frequencies " 0.407407407407407 0.592592592592593"; depth 135 ; unknown ; N/A GL194617.1 samtools variation 168793 168793 . . . alleles " C T"; frequencies " 0.613095238095238 0.386904761904762"; depth 168 ; unknown ; N/A GL194617.1 samtools variation 169530 169530 . . . alleles " C T"; frequencies " 0.36734693877551 0.63265306122449"; depth 49 ; unknown ; N/A GL194617.1 samtools variation 169531 169531 . . . alleles " G A"; frequencies " 0.653846153846154 0.346153846153846"; depth 52 ; unknown ; N/A GL194617.1 samtools variation 169547 169547 . . . alleles " C T"; frequencies " 0.634920634920635 0.365079365079365"; depth 63 ; unknown ; N/A GL194617.1 samtools variation 169673 169673 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 54 ; unknown ; N/A GL194617.1 samtools variation 169706 169706 . . . alleles " C A"; frequencies " 0.477272727272727 0.522727272727273"; depth 44 ; unknown ; N/A GL194617.1 samtools variation 169741 169741 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 42 ; unknown ; N/A GL194617.1 samtools variation 169745 169745 . . . alleles " C T"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL194617.1 samtools variation 169778 169778 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 88 ; unknown ; N/A GL194617.1 samtools variation 169787 169787 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 104 ; unknown ; N/A GL194617.1 samtools variation 170235 170235 . . . alleles " G A"; frequencies " 0.245614035087719 0.754385964912281"; depth 114 ; unknown ; N/A GL194617.1 samtools variation 170330 170330 . . . alleles " T C"; frequencies " 0.362637362637363 0.637362637362637"; depth 91 ; unknown ; N/A GL194617.1 samtools variation 170679 170679 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL194617.1 samtools variation 170915 170915 . . . alleles " G C"; frequencies " 0.383783783783784 0.616216216216216"; depth 370 ; unknown ; synonymous GL194617.1 samtools variation 170978 170978 . . . alleles " G T"; frequencies " 0.727564102564103 0.272435897435897"; depth 312 ; unknown ; synonymous GL194617.1 samtools variation 171102 171102 . . . alleles " A G"; frequencies " 0.35 0.65"; depth 220 ; unknown ; N/A GL194617.1 samtools variation 171314 171314 . . . alleles " C G"; frequencies " 0.589171974522293 0.410828025477707"; depth 314 ; unknown ; N/A GL194617.1 samtools variation 172243 172243 . . . alleles " T C"; frequencies " 0.519893899204244 0.480106100795756"; depth 377 ; unknown ; N/A GL194617.1 samtools variation 172591 172591 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194617.1 samtools variation 173037 173037 . . . alleles " G A"; frequencies " 0.644986449864499 0.355013550135501"; depth 369 ; unknown ; synonymous GL194617.1 samtools variation 173044 173044 . . . alleles " A G"; frequencies " 0.614285714285714 0.385714285714286"; depth 350 ; unknown ; non-synonymous GL194617.1 samtools variation 173304 173304 . . . alleles " T A"; frequencies " 0.642857142857143 0.357142857142857"; depth 168 ; unknown ; N/A GL194617.1 samtools variation 174875 174875 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL194620.1 samtools variation 138415 138415 . . . alleles " G A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; non-synonymous GL194622.1 samtools variation 78500 78500 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 36 ; known ; synonymous GL194622.1 samtools variation 83089 83089 . . . alleles " A T"; frequencies " 0.438202247191011 0.561797752808989"; depth 89 ; known ; synonymous GL194622.1 samtools variation 83161 83161 . . . alleles " C A"; frequencies " 0.422535211267606 0.577464788732394"; depth 71 ; unknown ; synonymous GL194622.1 samtools variation 84254 84254 . . . alleles " A G"; frequencies " 0.693693693693694 0.306306306306306"; depth 111 ; unknown ; non-synonymous GL194622.1 samtools variation 84496 84496 . . . alleles " G A"; frequencies " 0.202898550724638 0.797101449275362"; depth 69 ; known ; synonymous GL194622.1 samtools variation 85837 85837 . . . alleles " T A"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; synonymous GL194622.1 samtools variation 162880 162880 . . . alleles " G T"; frequencies " 0.596153846153846 0.403846153846154"; depth 52 ; known ; N/A GL194622.1 samtools variation 166377 166377 . . . alleles " C T"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; known ; N/A GL194622.1 samtools variation 170264 170264 . . . alleles " C T"; frequencies " 0.21875 0.78125"; depth 64 ; known ; N/A GL194622.1 samtools variation 170301 170301 . . . alleles " T C"; frequencies " 0.329268292682927 0.670731707317073"; depth 82 ; unknown ; N/A GL194632.1 samtools variation 23317 23317 . . . alleles " G A"; frequencies " 0.485355648535565 0.514644351464435"; depth 478 ; unknown ; synonymous GL194632.1 samtools variation 23933 23933 . . . alleles " A C"; frequencies " 0.239651416122004 0.760348583877996"; depth 459 ; known ; synonymous GL194632.1 samtools variation 28298 28298 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL194632.1 samtools variation 40709 40709 . . . alleles " G A"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; non-synonymous GL194632.1 samtools variation 40723 40723 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; known ; non-synonymous GL194632.1 samtools variation 42044 42044 . . . alleles " A G"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; non-synonymous GL194632.1 samtools variation 45125 45125 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL194632.1 samtools variation 48091 48091 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL194632.1 samtools variation 49009 49009 . . . alleles " C T"; frequencies " 0.659090909090909 0.340909090909091"; depth 44 ; unknown ; N/A GL194632.1 samtools variation 49208 49208 . . . alleles " A C"; frequencies " 0.462962962962963 0.537037037037037"; depth 54 ; unknown ; N/A GL194632.1 samtools variation 49298 49298 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL194632.1 samtools variation 49330 49330 . . . alleles " A G"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL194632.1 samtools variation 51649 51649 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194632.1 samtools variation 51664 51664 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL194632.1 samtools variation 54908 54908 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL194632.1 samtools variation 57381 57381 . . . alleles " A G"; frequencies " 0.28 0.72"; depth 75 ; known ; N/A GL194632.1 samtools variation 57707 57707 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; known ; N/A GL194632.1 samtools variation 58029 58029 . . . alleles " G T"; frequencies " 0.760479041916168 0.239520958083832"; depth 167 ; unknown ; N/A GL194632.1 samtools variation 58168 58168 . . . alleles " T G"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; known ; N/A GL194632.1 samtools variation 59323 59323 . . . alleles " A G"; frequencies " 0.532608695652174 0.467391304347826"; depth 92 ; unknown ; N/A GL194632.1 samtools variation 59470 59470 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 75 ; unknown ; N/A GL194632.1 samtools variation 59733 59733 . . . alleles " A T"; frequencies " 0.590163934426229 0.409836065573771"; depth 61 ; known ; N/A GL194632.1 samtools variation 59768 59768 . . . alleles " T C"; frequencies " 0.446428571428571 0.553571428571429"; depth 112 ; known ; N/A GL194632.1 samtools variation 59967 59967 . . . alleles " T C"; frequencies " 0.412213740458015 0.580152671755725"; depth 131 ; known ; N/A GL194632.1 samtools variation 61877 61877 . . . alleles " T A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL194632.1 samtools variation 62034 62034 . . . alleles " T C"; frequencies " 0.764112903225806 0.233870967741935"; depth 496 ; known ; non-synonymous GL194632.1 samtools variation 62783 62783 . . . alleles " C T"; frequencies " 0.544642857142857 0.455357142857143"; depth 112 ; unknown ; N/A GL194632.1 samtools variation 62905 62905 . . . alleles " T C"; frequencies " 0.234567901234568 0.765432098765432"; depth 81 ; known ; N/A GL194632.1 samtools variation 62926 62926 . . . alleles " C A"; frequencies " 0.460674157303371 0.539325842696629"; depth 89 ; known ; N/A GL194632.1 samtools variation 62941 62941 . . . alleles " T C"; frequencies " 0.760416666666667 0.239583333333333"; depth 96 ; unknown ; N/A GL194632.1 samtools variation 63504 63504 . . . alleles " T C"; frequencies " 0.4688995215311 0.5311004784689"; depth 209 ; unknown ; N/A GL194632.1 samtools variation 63917 63917 . . . alleles " G A"; frequencies " 0.316561844863732 0.683438155136268"; depth 477 ; known ; N/A GL194632.1 samtools variation 63973 63973 . . . alleles " C T"; frequencies " 0.746350364963504 0.253649635036496"; depth 1096 ; known ; non-synonymous GL194632.1 samtools variation 64334 64334 . . . alleles " A G"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL194632.1 samtools variation 64553 64553 . . . alleles " T C"; frequencies " 0.772431729518856 0.227568270481144"; depth 769 ; unknown ; non-synonymous GL194632.1 samtools variation 64827 64827 . . . alleles " T C"; frequencies " 0.411330049261084 0.588669950738916"; depth 406 ; unknown ; N/A GL194632.1 samtools variation 64890 64890 . . . alleles " C A"; frequencies " 0.530666666666667 0.469333333333333"; depth 375 ; unknown ; N/A GL194632.1 samtools variation 64912 64912 . . . alleles " C T"; frequencies " 0.315286624203822 0.684713375796178"; depth 314 ; known ; N/A GL194632.1 samtools variation 65344 65344 . . . alleles " C T"; frequencies " 0.339759036144578 0.660240963855422"; depth 415 ; unknown ; N/A GL194632.1 samtools variation 66225 66225 . . . alleles " A G"; frequencies " 0.492753623188406 0.507246376811594"; depth 69 ; unknown ; N/A GL194632.1 samtools variation 66346 66346 . . . alleles " C G"; frequencies " 0.441176470588235 0.558823529411765"; depth 34 ; known ; N/A GL194632.1 samtools variation 66955 66955 . . . alleles " T C"; frequencies " 0.44140625 0.55859375"; depth 256 ; unknown ; N/A GL194632.1 samtools variation 67327 67327 . . . alleles " A G"; frequencies " 0.205128205128205 0.794871794871795"; depth 78 ; known ; N/A GL194632.1 samtools variation 67359 67359 . . . alleles " C T"; frequencies " 0.223076923076923 0.776923076923077"; depth 130 ; known ; N/A GL194632.1 samtools variation 68727 68727 . . . alleles " C T"; frequencies " 0.586027111574557 0.409801876955162"; depth 959 ; unknown ; non-synonymous GL194632.1 samtools variation 69341 69341 . . . alleles " T C"; frequencies " 0.573170731707317 0.426829268292683"; depth 82 ; unknown ; N/A GL194632.1 samtools variation 69396 69396 . . . alleles " T C"; frequencies " 0.267857142857143 0.732142857142857"; depth 112 ; known ; N/A GL194632.1 samtools variation 69995 69995 . . . alleles " T C"; frequencies " 0.670454545454545 0.329545454545455"; depth 88 ; unknown ; N/A GL194632.1 samtools variation 69999 69999 . . . alleles " A C"; frequencies " 0.655913978494624 0.344086021505376"; depth 93 ; unknown ; N/A GL194632.1 samtools variation 70085 70085 . . . alleles " T C"; frequencies " 0.754098360655738 0.245901639344262"; depth 122 ; known ; N/A GL194632.1 samtools variation 71291 71291 . . . alleles " G C"; frequencies " 0.315165876777251 0.684834123222749"; depth 422 ; known ; N/A GL194632.1 samtools variation 71412 71412 . . . alleles " T C"; frequencies " 0.30162703379224 0.69837296620776"; depth 799 ; known ; non-synonymous GL194632.1 samtools variation 71656 71656 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL194632.1 samtools variation 73231 73231 . . . alleles " G T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; known ; N/A GL194632.1 samtools variation 73368 73368 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 32 ; known ; N/A GL194632.1 samtools variation 73382 73382 . . . alleles " A G"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL194632.1 samtools variation 73851 73851 . . . alleles " G A"; frequencies " 0.706896551724138 0.293103448275862"; depth 58 ; unknown ; N/A GL194632.1 samtools variation 73854 73854 . . . alleles " A G"; frequencies " 0.423076923076923 0.576923076923077"; depth 52 ; unknown ; N/A GL194632.1 samtools variation 73901 73901 . . . alleles " T C"; frequencies " 0.701030927835051 0.298969072164948"; depth 97 ; unknown ; N/A GL194632.1 samtools variation 74249 74249 . . . alleles " G A"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL194632.1 samtools variation 74251 74251 . . . alleles " G T"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL194632.1 samtools variation 74492 74492 . . . alleles " A T"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; known ; N/A GL194632.1 samtools variation 75764 75764 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 49 ; unknown ; N/A GL194632.1 samtools variation 75865 75865 . . . alleles " T C"; frequencies " 0.352941176470588 0.647058823529412"; depth 51 ; known ; N/A GL194632.1 samtools variation 80158 80158 . . . alleles " G A"; frequencies " 0.575819672131147 0.424180327868852"; depth 976 ; unknown ; synonymous GL194632.1 samtools variation 80276 80276 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL194632.1 samtools variation 80851 80851 . . . alleles " C T"; frequencies " 0.679245283018868 0.320754716981132"; depth 53 ; unknown ; N/A GL194632.1 samtools variation 82341 82341 . . . alleles " A C"; frequencies " 0.777777777777778 0.222222222222222"; depth 81 ; unknown ; N/A GL194632.1 samtools variation 83050 83050 . . . alleles " C T"; frequencies " 0.60377358490566 0.39622641509434"; depth 106 ; unknown ; N/A GL194632.1 samtools variation 83058 83058 . . . alleles " T C"; frequencies " 0.604395604395604 0.395604395604396"; depth 91 ; unknown ; N/A GL194632.1 samtools variation 83863 83863 . . . alleles " T C"; frequencies " 0.607476635514019 0.392523364485981"; depth 107 ; unknown ; N/A GL194632.1 samtools variation 84558 84558 . . . alleles " A G"; frequencies " 0.698224852071006 0.301775147928994"; depth 169 ; unknown ; N/A GL194632.1 samtools variation 84562 84562 . . . alleles " T C"; frequencies " 0.681818181818182 0.318181818181818"; depth 176 ; unknown ; N/A GL194632.1 samtools variation 84866 84866 . . . alleles " C T"; frequencies " 0.670103092783505 0.329896907216495"; depth 97 ; unknown ; N/A GL194632.1 samtools variation 85670 85670 . . . alleles " G A"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; known ; N/A GL194632.1 samtools variation 86617 86617 . . . alleles " A C"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; known ; N/A GL194632.1 samtools variation 89803 89803 . . . alleles " T C"; frequencies " 0.735849056603774 0.264150943396226"; depth 159 ; unknown ; N/A GL194632.1 samtools variation 89908 89908 . . . alleles " T C"; frequencies " 0.758389261744966 0.241610738255034"; depth 149 ; unknown ; N/A GL194632.1 samtools variation 90309 90309 . . . alleles " T C"; frequencies " 0.761194029850746 0.238805970149254"; depth 67 ; unknown ; N/A GL194632.1 samtools variation 90609 90609 . . . alleles " A G"; frequencies " 0.717127071823204 0.282872928176796"; depth 905 ; unknown ; synonymous GL194632.1 samtools variation 95803 95803 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194632.1 samtools variation 96893 96893 . . . alleles " C A"; frequencies " 0.419354838709677 0.580645161290323"; depth 62 ; unknown ; N/A GL194632.1 samtools variation 100039 100039 . . . alleles " T G"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; known ; N/A GL194632.1 samtools variation 102204 102204 . . . alleles " C T"; frequencies " 0.45 0.55"; depth 60 ; unknown ; N/A GL194632.1 samtools variation 104715 104715 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL194632.1 samtools variation 120010 120010 . . . alleles " C T"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; unknown ; N/A GL194632.1 samtools variation 143686 143686 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL194632.1 samtools variation 148435 148435 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL194632.1 samtools variation 151469 151469 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL194632.1 samtools variation 151472 151472 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL194632.1 samtools variation 152749 152749 . . . alleles " T C"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; known ; N/A GL194632.1 samtools variation 155290 155290 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL194632.1 samtools variation 167628 167628 . . . alleles " G C"; frequencies " 0.590778097982709 0.389048991354467"; depth 347 ; unknown ; synonymous GL194632.1 samtools variation 167629 167629 . . . alleles " C A"; frequencies " 0.610951008645533 0.389048991354467"; depth 347 ; unknown ; non-synonymous GL194632.1 samtools variation 167806 167806 . . . alleles " G A"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; N/A GL194632.1 samtools variation 167824 167824 . . . alleles " A C"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL194632.1 samtools variation 167880 167880 . . . alleles " G A"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL194632.1 samtools variation 168138 168138 . . . alleles " T C"; frequencies " 0.526315789473684 0.473684210526316"; depth 228 ; unknown ; non-synonymous GL194637.1 samtools variation 28830 28830 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194637.1 samtools variation 29364 29364 . . . alleles " C A"; frequencies " 0.623076923076923 0.361538461538462"; depth 130 ; unknown ; N/A GL194637.1 samtools variation 102473 102473 . . . alleles " A T"; frequencies " 0.50788643533123 0.488958990536278"; depth 317 ; known ; N/A GL194637.1 samtools variation 105053 105053 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL194637.1 samtools variation 112782 112782 . . . alleles " C G"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL194637.1 samtools variation 112835 112835 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL194637.1 samtools variation 116998 116998 . . . alleles " G A"; frequencies " 0.353535353535354 0.646464646464647"; depth 99 ; known ; N/A GL194638.1 samtools variation 104214 104214 . . . alleles " C A"; frequencies " 0.67032967032967 0.32967032967033"; depth 91 ; unknown ; N/A GL194638.1 samtools variation 109834 109834 . . . alleles " A C"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL194638.1 samtools variation 120158 120158 . . . alleles " C T"; frequencies " 0.715328467153285 0.284671532846715"; depth 137 ; unknown ; non-synonymous GL194638.1 samtools variation 121390 121390 . . . alleles " G A"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL194638.1 samtools variation 123589 123589 . . . alleles " C T"; frequencies " 0.759259259259259 0.240740740740741"; depth 54 ; unknown ; N/A GL194638.1 samtools variation 133767 133767 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL194638.1 samtools variation 145062 145062 . . . alleles " T C"; frequencies " 0.711538461538462 0.288461538461538"; depth 52 ; unknown ; N/A GL194638.1 samtools variation 149021 149021 . . . alleles " G T"; frequencies " 0.693430656934307 0.306569343065693"; depth 137 ; unknown ; N/A GL194638.1 samtools variation 149470 149470 . . . alleles " A T"; frequencies " 0.647058823529412 0.352941176470588"; depth 374 ; unknown ; N/A GL194638.1 samtools variation 150182 150182 . . . alleles " T G"; frequencies " 0.490654205607477 0.509345794392523"; depth 214 ; unknown ; N/A GL194639.1 samtools variation 249 249 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL194639.1 samtools variation 45931 45931 . . . alleles " A G"; frequencies " 0.307692307692308 0.692307692307692"; depth 39 ; known ; N/A GL194639.1 samtools variation 46066 46066 . . . alleles " G A"; frequencies " 0.290322580645161 0.709677419354839"; depth 62 ; known ; N/A GL194639.1 samtools variation 48196 48196 . . . alleles " T C"; frequencies " 0.303030303030303 0.696969696969697"; depth 66 ; known ; N/A GL194641.1 samtools variation 80347 80347 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194641.1 samtools variation 143461 143461 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 32 ; known ; synonymous GL194641.1 samtools variation 144230 144230 . . . alleles " C G"; frequencies " 0.272727272727273 0.727272727272727"; depth 44 ; known ; non-synonymous GL194644.1 samtools variation 19730 19730 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL194644.1 samtools variation 20288 20288 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL194644.1 samtools variation 21030 21030 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL194644.1 samtools variation 26570 26570 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194644.1 samtools variation 27418 27418 . . . alleles " A C"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL194644.1 samtools variation 27420 27420 . . . alleles " T G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL194644.1 samtools variation 36232 36232 . . . alleles " T C"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; unknown ; N/A GL194644.1 samtools variation 36246 36246 . . . alleles " G A"; frequencies " 0.595238095238095 0.404761904761905"; depth 42 ; unknown ; N/A GL194644.1 samtools variation 37383 37383 . . . alleles " T G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL194644.1 samtools variation 40287 40287 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; known ; N/A GL194644.1 samtools variation 45529 45529 . . . alleles " G A"; frequencies " 0.468085106382979 0.531914893617021"; depth 47 ; unknown ; N/A GL194644.1 samtools variation 46469 46469 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 51 ; unknown ; N/A GL194644.1 samtools variation 46798 46798 . . . alleles " T C"; frequencies " 0.481481481481481 0.518518518518518"; depth 108 ; unknown ; N/A GL194644.1 samtools variation 48407 48407 . . . alleles " G T"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL194644.1 samtools variation 51236 51236 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL194644.1 samtools variation 54408 54408 . . . alleles " C T"; frequencies " 0.549707602339181 0.450292397660819"; depth 171 ; unknown ; N/A GL194644.1 samtools variation 55883 55883 . . . alleles " G A"; frequencies " 0.705035971223022 0.294964028776978"; depth 556 ; unknown ; N/A GL194644.1 samtools variation 57297 57297 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL194644.1 samtools variation 59111 59111 . . . alleles " G A"; frequencies " 0.474226804123711 0.525773195876289"; depth 97 ; unknown ; N/A GL194644.1 samtools variation 59397 59397 . . . alleles " C T"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; unknown ; N/A GL194644.1 samtools variation 61296 61296 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL194644.1 samtools variation 61601 61601 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 25 ; known ; N/A GL194644.1 samtools variation 62510 62510 . . . alleles " G A"; frequencies " 0.412639405204461 0.587360594795539"; depth 269 ; unknown ; N/A GL194644.1 samtools variation 64728 64728 . . . alleles " A G"; frequencies " 0.518425460636516 0.481574539363484"; depth 1194 ; unknown ; N/A GL194644.1 samtools variation 82379 82379 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; synonymous GL194644.1 samtools variation 121835 121835 . . . alleles " G A"; frequencies " 0.236111111111111 0.763888888888889"; depth 216 ; known ; synonymous GL194644.1 samtools variation 122161 122161 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL194644.1 samtools variation 122387 122387 . . . alleles " G T"; frequencies " 0.366666666666667 0.633333333333333"; depth 30 ; known ; N/A GL194644.1 samtools variation 127869 127869 . . . alleles " G A"; frequencies " 0.5125 0.4875"; depth 160 ; known ; N/A GL194652.1 samtools variation 101041 101041 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL194654.1 samtools variation 2423 2423 . . . alleles " C T"; frequencies " 0.738461538461539 0.261538461538462"; depth 65 ; unknown ; N/A GL194656.1 samtools variation 33083 33083 . . . alleles " G C"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; known ; synonymous GL194656.1 samtools variation 72038 72038 . . . alleles " C G"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL194656.1 samtools variation 75341 75341 . . . alleles " C T"; frequencies " 0.3125 0.6875"; depth 32 ; unknown ; N/A GL194656.1 samtools variation 86622 86622 . . . alleles " T C"; frequencies " 0.474576271186441 0.525423728813559"; depth 59 ; known ; N/A GL194656.1 samtools variation 89817 89817 . . . alleles " C T"; frequencies " 0.621621621621622 0.378378378378378"; depth 37 ; known ; N/A GL194658.1 samtools variation 1007 1007 . . . alleles " A G"; frequencies " 0.469798657718121 0.528859060402685"; depth 745 ; unknown ; N/A GL194658.1 samtools variation 1051 1051 . . . alleles " A C"; frequencies " 0.581151832460733 0.418848167539267"; depth 955 ; unknown ; N/A GL194658.1 samtools variation 1190 1190 . . . alleles " T C"; frequencies " 0.429050279329609 0.570949720670391"; depth 895 ; unknown ; N/A GL194658.1 samtools variation 1226 1226 . . . alleles " C T"; frequencies " 0.325757575757576 0.674242424242424"; depth 792 ; unknown ; N/A GL194658.1 samtools variation 1338 1338 . . . alleles " A G"; frequencies " 0.68029197080292 0.31970802919708"; depth 685 ; unknown ; N/A GL194658.1 samtools variation 2215 2215 . . . alleles " G T"; frequencies " 0.655826558265583 0.344173441734417"; depth 738 ; known ; N/A GL194658.1 samtools variation 3484 3484 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL194658.1 samtools variation 3514 3514 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL194658.1 samtools variation 3568 3568 . . . alleles " C G"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; known ; N/A GL194658.1 samtools variation 3661 3661 . . . alleles " A G"; frequencies " 0.637931034482759 0.362068965517241"; depth 58 ; known ; N/A GL194658.1 samtools variation 5504 5504 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL194658.1 samtools variation 6110 6110 . . . alleles " T G"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; known ; N/A GL194658.1 samtools variation 25262 25262 . . . alleles " A G"; frequencies " 0.48876404494382 0.51123595505618"; depth 178 ; known ; synonymous GL194658.1 samtools variation 25795 25795 . . . alleles " G T"; frequencies " 0.792 0.208"; depth 125 ; unknown ; synonymous GL194658.1 samtools variation 55143 55143 . . . alleles " C A"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL194658.1 samtools variation 94044 94044 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 45 ; unknown ; N/A GL194658.1 samtools variation 96619 96619 . . . alleles " G T"; frequencies " 0.785714285714286 0.214285714285714"; depth 126 ; known ; N/A GL194658.1 samtools variation 96733 96733 . . . alleles " A G"; frequencies " 0.388059701492537 0.611940298507463"; depth 134 ; known ; N/A GL194658.1 samtools variation 96888 96888 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; N/A GL194661.1 samtools variation 89917 89917 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL194662.1 samtools variation 84079 84079 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194665.1 samtools variation 29446 29446 . . . alleles " T G"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL194665.1 samtools variation 29447 29447 . . . alleles " C T"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL194665.1 samtools variation 31517 31517 . . . alleles " C T"; frequencies " 0.71042471042471 0.28957528957529"; depth 259 ; known ; synonymous GL194665.1 samtools variation 46707 46707 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL194665.1 samtools variation 47853 47853 . . . alleles " C T"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; known ; N/A GL194665.1 samtools variation 48885 48885 . . . alleles " A G"; frequencies " 0.671052631578947 0.328947368421053"; depth 76 ; known ; N/A GL194665.1 samtools variation 56380 56380 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL194665.1 samtools variation 70646 70646 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 78 ; unknown ; N/A GL194665.1 samtools variation 70688 70688 . . . alleles " G A"; frequencies " 0.350877192982456 0.649122807017544"; depth 57 ; known ; N/A GL194665.1 samtools variation 70912 70912 . . . alleles " G T"; frequencies " 0.391304347826087 0.608695652173913"; depth 46 ; known ; N/A GL194665.1 samtools variation 79734 79734 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL194665.1 samtools variation 80857 80857 . . . alleles " T G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL194671.1 samtools variation 54798 54798 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL194672.1 samtools variation 136840 136840 . . . alleles " G A"; frequencies " 0.737373737373737 0.262626262626263"; depth 198 ; unknown ; N/A GL194672.1 samtools variation 136911 136911 . . . alleles " G A"; frequencies " 0.758169934640523 0.241830065359477"; depth 153 ; unknown ; N/A GL194672.1 samtools variation 136962 136962 . . . alleles " T C"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL194672.1 samtools variation 137005 137005 . . . alleles " G A"; frequencies " 0.680851063829787 0.319148936170213"; depth 47 ; unknown ; N/A GL194672.1 samtools variation 137159 137159 . . . alleles " G A"; frequencies " 0.71304347826087 0.28695652173913"; depth 115 ; unknown ; N/A GL194672.1 samtools variation 137422 137422 . . . alleles " A G"; frequencies " 0.721518987341772 0.278481012658228"; depth 79 ; unknown ; N/A GL194672.1 samtools variation 137444 137444 . . . alleles " C T"; frequencies " 0.746835443037975 0.253164556962025"; depth 79 ; unknown ; N/A GL194672.1 samtools variation 137632 137632 . . . alleles " G A"; frequencies " 0.58974358974359 0.41025641025641"; depth 39 ; unknown ; N/A GL194672.1 samtools variation 137706 137706 . . . alleles " A C"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; unknown ; N/A GL194672.1 samtools variation 137835 137835 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL194672.1 samtools variation 137840 137840 . . . alleles " C T"; frequencies " 0.755555555555556 0.244444444444444"; depth 45 ; unknown ; N/A GL194672.1 samtools variation 139785 139785 . . . alleles " T G"; frequencies " 0.568627450980392 0.431372549019608"; depth 51 ; unknown ; N/A GL194672.1 samtools variation 139809 139809 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 63 ; unknown ; N/A GL194672.1 samtools variation 140728 140728 . . . alleles " C T"; frequencies " 0.708235294117647 0.291764705882353"; depth 425 ; unknown ; N/A GL194672.1 samtools variation 141518 141518 . . . alleles " A C"; frequencies " 0.204918032786885 0.795081967213115"; depth 244 ; known ; N/A GL194672.1 samtools variation 141680 141680 . . . alleles " A G"; frequencies " 0.582352941176471 0.417647058823529"; depth 170 ; known ; N/A GL194672.1 samtools variation 142056 142056 . . . alleles " C A"; frequencies " 0.411290322580645 0.588709677419355"; depth 248 ; known ; N/A GL194672.1 samtools variation 162497 162497 . . . alleles " A G"; frequencies " 0.21969696969697 0.78030303030303"; depth 132 ; known ; synonymous GL194680.1 samtools variation 47746 47746 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL194680.1 samtools variation 47773 47773 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194680.1 samtools variation 112743 112743 . . . alleles " T C"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL194681.1 samtools variation 134502 134502 . . . alleles " T G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL194681.1 samtools variation 141615 141615 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL194681.1 samtools variation 141713 141713 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL194681.1 samtools variation 142136 142136 . . . alleles " T A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL194686.1 samtools variation 65947 65947 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194686.1 samtools variation 79168 79168 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL194686.1 samtools variation 83011 83011 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL194697.1 samtools variation 71254 71254 . . . alleles " G A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; synonymous GL194697.1 samtools variation 138053 138053 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; synonymous GL194702.1 samtools variation 76892 76892 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 51 ; unknown ; N/A GL194702.1 samtools variation 76912 76912 . . . alleles " C T"; frequencies " 0.278688524590164 0.721311475409836"; depth 61 ; unknown ; N/A GL194702.1 samtools variation 77041 77041 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL194702.1 samtools variation 77085 77085 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL194702.1 samtools variation 77129 77129 . . . alleles " A G"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL194708.1 samtools variation 92328 92328 . . . alleles " C T"; frequencies " 0.528455284552846 0.471544715447154"; depth 123 ; known ; N/A GL194708.1 samtools variation 92949 92949 . . . alleles " A G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL194708.1 samtools variation 93171 93171 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 65 ; unknown ; N/A GL194708.1 samtools variation 94006 94006 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL194711.1 samtools variation 56270 56270 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194712.1 samtools variation 106921 106921 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL194712.1 samtools variation 118021 118021 . . . alleles " T C"; frequencies " 0.741176470588235 0.258823529411765"; depth 170 ; known ; N/A GL194712.1 samtools variation 118522 118522 . . . alleles " T C"; frequencies " 0.423387096774194 0.576612903225806"; depth 248 ; known ; N/A GL194712.1 samtools variation 118724 118724 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 96 ; known ; N/A GL194712.1 samtools variation 119207 119207 . . . alleles " C A"; frequencies " 0.722222222222222 0.277777777777778"; depth 162 ; known ; N/A GL194712.1 samtools variation 120220 120220 . . . alleles " A G"; frequencies " 0.602409638554217 0.397590361445783"; depth 83 ; known ; N/A GL194712.1 samtools variation 120230 120230 . . . alleles " T C"; frequencies " 0.620689655172414 0.379310344827586"; depth 87 ; known ; N/A GL194712.1 samtools variation 121401 121401 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; known ; N/A GL194712.1 samtools variation 121507 121507 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 180 ; known ; N/A GL194712.1 samtools variation 121672 121672 . . . alleles " T C"; frequencies " 0.473333333333333 0.526666666666667"; depth 150 ; known ; N/A GL194712.1 samtools variation 121750 121750 . . . alleles " T A"; frequencies " 0.726643598615917 0.273356401384083"; depth 289 ; unknown ; synonymous GL194712.1 samtools variation 121855 121855 . . . alleles " C T"; frequencies " 0.598360655737705 0.401639344262295"; depth 366 ; known ; synonymous GL194712.1 samtools variation 122570 122570 . . . alleles " G C"; frequencies " 0.53125 0.46875"; depth 64 ; known ; N/A GL194712.1 samtools variation 123280 123280 . . . alleles " C T"; frequencies " 0.690909090909091 0.309090909090909"; depth 55 ; unknown ; N/A GL194712.1 samtools variation 123507 123507 . . . alleles " C T"; frequencies " 0.645161290322581 0.354838709677419"; depth 62 ; unknown ; N/A GL194712.1 samtools variation 124483 124483 . . . alleles " G C"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL194712.1 samtools variation 127666 127666 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL194712.1 samtools variation 128371 128371 . . . alleles " G T"; frequencies " 0.289473684210526 0.710526315789474"; depth 38 ; known ; N/A GL194712.1 samtools variation 133542 133542 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL194715.1 samtools variation 150385 150385 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL194716.1 samtools variation 13482 13482 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194716.1 samtools variation 13516 13516 . . . alleles " C G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL194723.1 samtools variation 27612 27612 . . . alleles " C G"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; unknown ; non-synonymous GL194725.1 samtools variation 2075 2075 . . . alleles " G A"; frequencies " 0.79746835443038 0.20253164556962"; depth 79 ; unknown ; non-synonymous GL194725.1 samtools variation 14008 14008 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL194725.1 samtools variation 24914 24914 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; known ; N/A GL194725.1 samtools variation 34945 34945 . . . alleles " T C"; frequencies " 0.311111111111111 0.688888888888889"; depth 45 ; known ; N/A GL194725.1 samtools variation 35135 35135 . . . alleles " T C"; frequencies " 0.398648648648649 0.601351351351351"; depth 148 ; known ; N/A GL194725.1 samtools variation 104257 104257 . . . alleles " C T"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; N/A GL194728.1 samtools variation 57745 57745 . . . alleles " A G"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; known ; N/A GL194728.1 samtools variation 58820 58820 . . . alleles " A C"; frequencies " 0.464788732394366 0.535211267605634"; depth 71 ; known ; N/A GL194728.1 samtools variation 67681 67681 . . . alleles " C G"; frequencies " 0.688741721854305 0.311258278145695"; depth 151 ; unknown ; N/A GL194728.1 samtools variation 67982 67982 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 72 ; known ; N/A GL194729.1 samtools variation 1102 1102 . . . alleles " C G"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; known ; N/A GL194733.1 samtools variation 7621 7621 . . . alleles " G T"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL194733.1 samtools variation 64467 64467 . . . alleles " G A"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; known ; N/A GL194733.1 samtools variation 64546 64546 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL194733.1 samtools variation 68534 68534 . . . alleles " C G"; frequencies " 0.348623853211009 0.651376146788991"; depth 109 ; known ; N/A GL194733.1 samtools variation 139018 139018 . . . alleles " A G"; frequencies " 0.418604651162791 0.581395348837209"; depth 43 ; unknown ; N/A GL194733.1 samtools variation 139047 139047 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 40 ; unknown ; N/A GL194734.1 samtools variation 49333 49333 . . . alleles " G A"; frequencies " 0.571428571428571 0.412698412698413"; depth 63 ; unknown ; N/A GL194734.1 samtools variation 49634 49634 . . . alleles " A C"; frequencies " 0.740196078431373 0.259803921568627"; depth 204 ; known ; N/A GL194744.1 samtools variation 74544 74544 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 75 ; known ; synonymous GL194744.1 samtools variation 130989 130989 . . . alleles " G A"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; known ; synonymous GL194762.1 samtools variation 93186 93186 . . . alleles " A G"; frequencies " 0.275 0.725"; depth 120 ; known ; synonymous GL194762.1 samtools variation 130645 130645 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL194763.1 samtools variation 106197 106197 . . . alleles " T C"; frequencies " 0.681818181818182 0.318181818181818"; depth 44 ; unknown ; N/A GL194763.1 samtools variation 115175 115175 . . . alleles " G A"; frequencies " 0.282051282051282 0.717948717948718"; depth 39 ; unknown ; N/A GL194767.1 samtools variation 283 283 . . . alleles " T G"; frequencies " 0.25 0.75"; depth 20 ; known ; N/A GL194767.1 samtools variation 285 285 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL194767.1 samtools variation 8917 8917 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194767.1 samtools variation 29827 29827 . . . alleles " G A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL194767.1 samtools variation 62987 62987 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL194767.1 samtools variation 67747 67747 . . . alleles " C G"; frequencies " 0.565217391304348 0.434782608695652"; depth 23 ; unknown ; non-synonymous GL194767.1 samtools variation 84174 84174 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; N/A GL194767.1 samtools variation 114778 114778 . . . alleles " A T"; frequencies " 0.71875 0.28125"; depth 32 ; known ; N/A GL194767.1 samtools variation 114819 114819 . . . alleles " T C"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL194767.1 samtools variation 114944 114944 . . . alleles " A G"; frequencies " 0.526198439241917 0.473801560758082"; depth 897 ; known ; non-synonymous GL194767.1 samtools variation 123952 123952 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL194767.1 samtools variation 127230 127230 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL194767.1 samtools variation 127315 127315 . . . alleles " C G"; frequencies " 0.761904761904762 0.238095238095238"; depth 42 ; unknown ; N/A GL194767.1 samtools variation 129487 129487 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194767.1 samtools variation 129494 129494 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL194767.1 samtools variation 131324 131324 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL194767.1 samtools variation 131376 131376 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL194767.1 samtools variation 131465 131465 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL194767.1 samtools variation 131856 131856 . . . alleles " G T"; frequencies " 0.695652173913043 0.304347826086957"; depth 46 ; unknown ; N/A GL194768.1 samtools variation 83929 83929 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 30 ; known ; N/A GL194768.1 samtools variation 98884 98884 . . . alleles " G A"; frequencies " 0.404255319148936 0.595744680851064"; depth 47 ; known ; N/A GL194768.1 samtools variation 98978 98978 . . . alleles " A G"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; known ; N/A GL194768.1 samtools variation 109913 109913 . . . alleles " A C"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; known ; N/A GL194770.1 samtools variation 95497 95497 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL194770.1 samtools variation 126912 126912 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL194776.1 samtools variation 10661 10661 . . . alleles " C T"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL194784.1 samtools variation 92739 92739 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194785.1 samtools variation 9066 9066 . . . alleles " G C"; frequencies " 0.408163265306122 0.520408163265306"; depth 98 ; unknown ; synonymous GL194785.1 samtools variation 9067 9067 . . . alleles " C A"; frequencies " 0.47 0.53"; depth 100 ; unknown ; non-synonymous GL194785.1 samtools variation 9244 9244 . . . alleles " G A"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL194785.1 samtools variation 9262 9262 . . . alleles " A C"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; unknown ; N/A GL194785.1 samtools variation 9318 9318 . . . alleles " G A"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL194785.1 samtools variation 9603 9603 . . . alleles " A G"; frequencies " 0.592039800995025 0.407960199004975"; depth 201 ; unknown ; non-synonymous GL194785.1 samtools variation 16213 16213 . . . alleles " C T"; frequencies " 0.656862745098039 0.343137254901961"; depth 102 ; unknown ; synonymous GL194785.1 samtools variation 16231 16231 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 99 ; unknown ; synonymous GL194785.1 samtools variation 19362 19362 . . . alleles " A G"; frequencies " 0.577777777777778 0.422222222222222"; depth 45 ; known ; N/A GL194785.1 samtools variation 30573 30573 . . . alleles " G T"; frequencies " 0.770114942528736 0.229885057471264"; depth 87 ; unknown ; non-synonymous GL194785.1 samtools variation 30622 30622 . . . alleles " G A"; frequencies " 0.318840579710145 0.681159420289855"; depth 69 ; unknown ; synonymous GL194785.1 samtools variation 34384 34384 . . . alleles " T C"; frequencies " 0.43859649122807 0.56140350877193"; depth 171 ; unknown ; N/A GL194785.1 samtools variation 34447 34447 . . . alleles " C A"; frequencies " 0.625 0.375"; depth 80 ; unknown ; N/A GL194785.1 samtools variation 34514 34514 . . . alleles " G A"; frequencies " 0.702702702702703 0.297297297297297"; depth 111 ; unknown ; N/A GL194785.1 samtools variation 34641 34641 . . . alleles " G T"; frequencies " 0.530259365994236 0.469740634005764"; depth 347 ; unknown ; non-synonymous GL194785.1 samtools variation 34642 34642 . . . alleles " C G"; frequencies " 0.521613832853026 0.46685878962536"; depth 347 ; unknown ; synonymous GL194785.1 samtools variation 66908 66908 . . . alleles " G A"; frequencies " 0.273972602739726 0.726027397260274"; depth 73 ; unknown ; synonymous GL194785.1 samtools variation 73619 73619 . . . alleles " T C"; frequencies " 0.309090909090909 0.690909090909091"; depth 330 ; unknown ; non-synonymous GL194785.1 samtools variation 74155 74155 . . . alleles " G T"; frequencies " 0.558359621451104 0.441640378548896"; depth 317 ; unknown ; non-synonymous GL194785.1 samtools variation 74156 74156 . . . alleles " C G"; frequencies " 0.547169811320755 0.449685534591195"; depth 318 ; unknown ; synonymous GL194785.1 samtools variation 78185 78185 . . . alleles " G A"; frequencies " 0.728813559322034 0.271186440677966"; depth 236 ; unknown ; synonymous GL194786.1 samtools variation 13168 13168 . . . alleles " C A"; frequencies " 0.405405405405405 0.594594594594595"; depth 74 ; known ; N/A GL194786.1 samtools variation 27014 27014 . . . alleles " G T"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL194786.1 samtools variation 61843 61843 . . . alleles " T C"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; known ; N/A GL194786.1 samtools variation 64033 64033 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL194786.1 samtools variation 67324 67324 . . . alleles " C T"; frequencies " 0.780590717299578 0.219409282700422"; depth 711 ; unknown ; N/A GL194786.1 samtools variation 72769 72769 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL194793.1 samtools variation 62781 62781 . . . alleles " T C"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; known ; synonymous GL194793.1 samtools variation 65847 65847 . . . alleles " T C"; frequencies " 0.27906976744186 0.720930232558139"; depth 43 ; known ; non-synonymous GL194798.1 samtools variation 5543 5543 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 85 ; unknown ; N/A GL194798.1 samtools variation 5822 5822 . . . alleles " C T"; frequencies " 0.564516129032258 0.435483870967742"; depth 62 ; unknown ; N/A GL194798.1 samtools variation 5894 5894 . . . alleles " T C"; frequencies " 0.658536585365854 0.341463414634146"; depth 41 ; unknown ; N/A GL194798.1 samtools variation 5907 5907 . . . alleles " G T"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL194798.1 samtools variation 6622 6622 . . . alleles " T C"; frequencies " 0.617021276595745 0.382978723404255"; depth 47 ; unknown ; N/A GL194798.1 samtools variation 80725 80725 . . . alleles " C T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL194798.1 samtools variation 129996 129996 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL194800.1 samtools variation 5038 5038 . . . alleles " C G"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; N/A GL194800.1 samtools variation 5165 5165 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL194800.1 samtools variation 12020 12020 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194800.1 samtools variation 12471 12471 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL194800.1 samtools variation 12495 12495 . . . alleles " A C"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL194800.1 samtools variation 12619 12619 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL194800.1 samtools variation 13306 13306 . . . alleles " C G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL194800.1 samtools variation 20734 20734 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194800.1 samtools variation 21081 21081 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL194800.1 samtools variation 31442 31442 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL194800.1 samtools variation 37644 37644 . . . alleles " G A"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; known ; N/A GL194800.1 samtools variation 39312 39312 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL194800.1 samtools variation 65792 65792 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194800.1 samtools variation 69852 69852 . . . alleles " G A"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL194805.1 samtools variation 57750 57750 . . . alleles " G C"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; known ; N/A GL194805.1 samtools variation 57992 57992 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL194805.1 samtools variation 58700 58700 . . . alleles " A G"; frequencies " 0.32 0.68"; depth 25 ; known ; N/A GL194805.1 samtools variation 59003 59003 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; N/A GL194805.1 samtools variation 61879 61879 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL194805.1 samtools variation 64386 64386 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 42 ; known ; N/A GL194805.1 samtools variation 77231 77231 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 132 ; known ; N/A GL194805.1 samtools variation 78101 78101 . . . alleles " G A"; frequencies " 0.737373737373737 0.262626262626263"; depth 198 ; unknown ; N/A GL194805.1 samtools variation 109477 109477 . . . alleles " C T"; frequencies " 0.681481481481481 0.318518518518519"; depth 270 ; known ; synonymous GL194809.1 samtools variation 66708 66708 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL194809.1 samtools variation 68137 68137 . . . alleles " A G"; frequencies " 0.609090909090909 0.390909090909091"; depth 110 ; known ; synonymous GL194809.1 samtools variation 71086 71086 . . . alleles " T C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL194809.1 samtools variation 72288 72288 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL194809.1 samtools variation 73310 73310 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL194809.1 samtools variation 74840 74840 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; known ; N/A GL194809.1 samtools variation 76470 76470 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194809.1 samtools variation 90137 90137 . . . alleles " A G"; frequencies " 0.435897435897436 0.564102564102564"; depth 117 ; unknown ; synonymous GL194809.1 samtools variation 106803 106803 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL194809.1 samtools variation 111385 111385 . . . alleles " C T"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; known ; synonymous GL194810.1 samtools variation 19658 19658 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; known ; N/A GL194813.1 samtools variation 128903 128903 . . . alleles " C T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL194813.1 samtools variation 128997 128997 . . . alleles " T A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL194814.1 samtools variation 22725 22725 . . . alleles " C T"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL194814.1 samtools variation 31279 31279 . . . alleles " A G"; frequencies " 0.651162790697674 0.348837209302326"; depth 43 ; unknown ; N/A GL194814.1 samtools variation 31377 31377 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL194814.1 samtools variation 32710 32710 . . . alleles " A C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL194814.1 samtools variation 45108 45108 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL194817.1 samtools variation 31205 31205 . . . alleles " C T"; frequencies " 0.794871794871795 0.205128205128205"; depth 39 ; unknown ; N/A GL194817.1 samtools variation 32340 32340 . . . alleles " T C"; frequencies " 0.630434782608696 0.369565217391304"; depth 46 ; unknown ; N/A GL194818.1 samtools variation 126810 126810 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; non-synonymous GL194823.1 samtools variation 47589 47589 . . . alleles " G A"; frequencies " 0.497630331753554 0.502369668246445"; depth 211 ; unknown ; non-synonymous GL194823.1 samtools variation 83341 83341 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; synonymous GL194823.1 samtools variation 87324 87324 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; synonymous GL194824.1 samtools variation 67676 67676 . . . alleles " T C"; frequencies " 0.75 0.214285714285714"; depth 28 ; unknown ; N/A GL194824.1 samtools variation 75646 75646 . . . alleles " A T"; frequencies " 0.454545454545455 0.545454545454545"; depth 44 ; unknown ; N/A GL194826.1 samtools variation 50803 50803 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL194826.1 samtools variation 50871 50871 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL194826.1 samtools variation 51516 51516 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL194826.1 samtools variation 102942 102942 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 28 ; unknown ; synonymous GL194828.1 samtools variation 96623 96623 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL194828.1 samtools variation 96660 96660 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194834.1 samtools variation 11029 11029 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; known ; synonymous GL194834.1 samtools variation 36581 36581 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 91 ; known ; N/A GL194834.1 samtools variation 36803 36803 . . . alleles " C G"; frequencies " 0.287878787878788 0.712121212121212"; depth 66 ; known ; N/A GL194834.1 samtools variation 38797 38797 . . . alleles " G A"; frequencies " 0.765625 0.234375"; depth 128 ; known ; N/A GL194834.1 samtools variation 42144 42144 . . . alleles " C T"; frequencies " 0.283333333333333 0.716666666666667"; depth 60 ; known ; non-synonymous GL194834.1 samtools variation 42514 42514 . . . alleles " A G"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; known ; synonymous GL194839.1 samtools variation 115819 115819 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; non-synonymous GL194841.1 samtools variation 415 415 . . . alleles " C T"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; known ; N/A GL194841.1 samtools variation 868 868 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL194841.1 samtools variation 910 910 . . . alleles " A G"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL194841.1 samtools variation 2319 2319 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 20 ; unknown ; N/A GL194841.1 samtools variation 3242 3242 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 24 ; known ; N/A GL194841.1 samtools variation 3456 3456 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 26 ; known ; N/A GL194841.1 samtools variation 3510 3510 . . . alleles " G A"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; known ; N/A GL194841.1 samtools variation 3601 3601 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL194841.1 samtools variation 4745 4745 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; known ; synonymous GL194841.1 samtools variation 5289 5289 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL194841.1 samtools variation 7419 7419 . . . alleles " G C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL194841.1 samtools variation 10340 10340 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 30 ; unknown ; N/A GL194841.1 samtools variation 10362 10362 . . . alleles " T G"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; N/A GL194841.1 samtools variation 11573 11573 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL194841.1 samtools variation 12219 12219 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL194841.1 samtools variation 12223 12223 . . . alleles " C G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL194841.1 samtools variation 14220 14220 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL194842.1 samtools variation 38178 38178 . . . alleles " T A"; frequencies " 0.246153846153846 0.753846153846154"; depth 65 ; unknown ; N/A GL194842.1 samtools variation 38390 38390 . . . alleles " T C"; frequencies " 0.32258064516129 0.67741935483871"; depth 62 ; unknown ; synonymous GL194842.1 samtools variation 39464 39464 . . . alleles " T C"; frequencies " 0.338983050847458 0.661016949152542"; depth 59 ; unknown ; synonymous GL194842.1 samtools variation 39779 39779 . . . alleles " G C"; frequencies " 0.263888888888889 0.736111111111111"; depth 72 ; unknown ; synonymous GL194842.1 samtools variation 39836 39836 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 32 ; unknown ; synonymous GL194842.1 samtools variation 41288 41288 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL194842.1 samtools variation 41434 41434 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 55 ; unknown ; N/A GL194842.1 samtools variation 41786 41786 . . . alleles " C G"; frequencies " 0.420560747663551 0.579439252336449"; depth 107 ; unknown ; N/A GL194842.1 samtools variation 42342 42342 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL194842.1 samtools variation 43209 43209 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 42 ; unknown ; N/A GL194842.1 samtools variation 44117 44117 . . . alleles " T A"; frequencies " 0.621951219512195 0.378048780487805"; depth 164 ; unknown ; N/A GL194842.1 samtools variation 82862 82862 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 105 ; unknown ; N/A GL194842.1 samtools variation 120337 120337 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL194843.1 samtools variation 82159 82159 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL194843.1 samtools variation 115398 115398 . . . alleles " T G"; frequencies " 0.585585585585586 0.414414414414414"; depth 111 ; unknown ; N/A GL194843.1 samtools variation 115591 115591 . . . alleles " G A"; frequencies " 0.544117647058823 0.455882352941176"; depth 68 ; unknown ; N/A GL194843.1 samtools variation 115603 115603 . . . alleles " G T"; frequencies " 0.711864406779661 0.288135593220339"; depth 59 ; unknown ; N/A GL194848.1 samtools variation 27904 27904 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL194848.1 samtools variation 30679 30679 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL194848.1 samtools variation 43808 43808 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL194848.1 samtools variation 57029 57029 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL194848.1 samtools variation 114243 114243 . . . alleles " C T"; frequencies " 0.720430107526882 0.279569892473118"; depth 186 ; unknown ; synonymous GL194848.1 samtools variation 114742 114742 . . . alleles " C T"; frequencies " 0.78 0.22"; depth 50 ; unknown ; N/A GL194848.1 samtools variation 114969 114969 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 33 ; unknown ; N/A GL194848.1 samtools variation 115276 115276 . . . alleles " T C"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL194848.1 samtools variation 121096 121096 . . . alleles " G A"; frequencies " 0.71830985915493 0.28169014084507"; depth 71 ; unknown ; N/A GL194849.1 samtools variation 24575 24575 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; known ; N/A GL194849.1 samtools variation 75527 75527 . . . alleles " C T"; frequencies " 0.640776699029126 0.359223300970874"; depth 103 ; unknown ; synonymous GL194849.1 samtools variation 79966 79966 . . . alleles " T G"; frequencies " 0.703125 0.296875"; depth 64 ; unknown ; synonymous GL194849.1 samtools variation 85965 85965 . . . alleles " C T"; frequencies " 0.686274509803922 0.313725490196078"; depth 51 ; unknown ; non-synonymous GL194849.1 samtools variation 88668 88668 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; non-synonymous GL194849.1 samtools variation 88672 88672 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 15 ; unknown ; non-synonymous GL194849.1 samtools variation 96415 96415 . . . alleles " C G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; synonymous GL194849.1 samtools variation 96494 96494 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; non-synonymous GL194849.1 samtools variation 103349 103349 . . . alleles " T G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; non-synonymous GL194849.1 samtools variation 109878 109878 . . . alleles " G A"; frequencies " 0.693877551020408 0.306122448979592"; depth 49 ; known ; non-synonymous GL194849.1 samtools variation 109926 109926 . . . alleles " C T"; frequencies " 0.597560975609756 0.402439024390244"; depth 82 ; unknown ; non-synonymous GL194849.1 samtools variation 109954 109954 . . . alleles " C T"; frequencies " 0.675675675675676 0.324324324324324"; depth 74 ; unknown ; synonymous GL194849.1 samtools variation 110057 110057 . . . alleles " A C"; frequencies " 0.216867469879518 0.783132530120482"; depth 83 ; unknown ; non-synonymous GL194849.1 samtools variation 110147 110147 . . . alleles " A G"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; unknown ; non-synonymous GL194849.1 samtools variation 110155 110155 . . . alleles " G A"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; unknown ; synonymous GL194849.1 samtools variation 110252 110252 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; non-synonymous GL194849.1 samtools variation 110264 110264 . . . alleles " G C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; non-synonymous GL194849.1 samtools variation 119727 119727 . . . alleles " A T"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL194849.1 samtools variation 119744 119744 . . . alleles " G A"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; N/A GL194849.1 samtools variation 119897 119897 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL194849.1 samtools variation 120363 120363 . . . alleles " G C"; frequencies " 0.382978723404255 0.617021276595745"; depth 141 ; unknown ; N/A GL194855.1 samtools variation 72225 72225 . . . alleles " T A"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL194856.1 samtools variation 30366 30366 . . . alleles " C A"; frequencies " 0.481818181818182 0.518181818181818"; depth 110 ; unknown ; non-synonymous GL194856.1 samtools variation 30387 30387 . . . alleles " A G"; frequencies " 0.786885245901639 0.213114754098361"; depth 61 ; unknown ; non-synonymous GL194856.1 samtools variation 31112 31112 . . . alleles " G A"; frequencies " 0.748898678414097 0.251101321585903"; depth 227 ; unknown ; synonymous GL194856.1 samtools variation 87760 87760 . . . alleles " A G"; frequencies " 0.296928327645051 0.703071672354949"; depth 586 ; known ; non-synonymous GL194856.1 samtools variation 114029 114029 . . . alleles " C T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL194857.1 samtools variation 1021 1021 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL194857.1 samtools variation 1084 1084 . . . alleles " G A"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL194857.1 samtools variation 8914 8914 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL194857.1 samtools variation 10960 10960 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL194857.1 samtools variation 13920 13920 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL194858.1 samtools variation 90891 90891 . . . alleles " C T"; frequencies " 0.377358490566038 0.622641509433962"; depth 53 ; known ; N/A GL194858.1 samtools variation 98881 98881 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL194858.1 samtools variation 114850 114850 . . . alleles " A C"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL194860.1 samtools variation 12845 12845 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; non-synonymous GL194860.1 samtools variation 111899 111899 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL194863.1 samtools variation 74953 74953 . . . alleles " C G"; frequencies " 0.293103448275862 0.706896551724138"; depth 116 ; known ; N/A GL194863.1 samtools variation 88509 88509 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194863.1 samtools variation 97052 97052 . . . alleles " G T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL194863.1 samtools variation 102258 102258 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL194863.1 samtools variation 109819 109819 . . . alleles " T C"; frequencies " 0.661016949152542 0.338983050847458"; depth 59 ; unknown ; N/A GL194863.1 samtools variation 109828 109828 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 60 ; unknown ; N/A GL194865.1 samtools variation 5732 5732 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL194865.1 samtools variation 5887 5887 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194865.1 samtools variation 7104 7104 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL194865.1 samtools variation 7494 7494 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194865.1 samtools variation 8290 8290 . . . alleles " G A"; frequencies " 0.504708097928437 0.493408662900188"; depth 531 ; unknown ; non-synonymous GL194865.1 samtools variation 12881 12881 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL194865.1 samtools variation 17211 17211 . . . alleles " A C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL194865.1 samtools variation 23547 23547 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194865.1 samtools variation 23613 23613 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194865.1 samtools variation 26833 26833 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL194865.1 samtools variation 26859 26859 . . . alleles " A C"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL194865.1 samtools variation 27254 27254 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL194865.1 samtools variation 27611 27611 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL194865.1 samtools variation 27784 27784 . . . alleles " G C"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL194865.1 samtools variation 32730 32730 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL194865.1 samtools variation 33708 33708 . . . alleles " T A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL194865.1 samtools variation 34671 34671 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194865.1 samtools variation 35569 35569 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL194865.1 samtools variation 36397 36397 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 60 ; unknown ; N/A GL194865.1 samtools variation 37118 37118 . . . alleles " T A"; frequencies " 0.632911392405063 0.367088607594937"; depth 79 ; unknown ; N/A GL194865.1 samtools variation 37119 37119 . . . alleles " T A"; frequencies " 0.618421052631579 0.381578947368421"; depth 76 ; unknown ; N/A GL194865.1 samtools variation 37172 37172 . . . alleles " C T"; frequencies " 0.33668903803132 0.66331096196868"; depth 894 ; known ; synonymous GL194865.1 samtools variation 37595 37595 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL194865.1 samtools variation 38101 38101 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194865.1 samtools variation 39097 39097 . . . alleles " A C"; frequencies " 0.345454545454545 0.654545454545455"; depth 55 ; known ; N/A GL194865.1 samtools variation 39282 39282 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL194865.1 samtools variation 39283 39283 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL194865.1 samtools variation 39334 39334 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL194865.1 samtools variation 40103 40103 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL194865.1 samtools variation 40670 40670 . . . alleles " T A"; frequencies " 0.375 0.625"; depth 48 ; known ; N/A GL194865.1 samtools variation 40705 40705 . . . alleles " G C"; frequencies " 0.347826086956522 0.652173913043478"; depth 46 ; known ; N/A GL194865.1 samtools variation 41108 41108 . . . alleles " A G"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; known ; N/A GL194865.1 samtools variation 42483 42483 . . . alleles " A C"; frequencies " 0.40625 0.59375"; depth 32 ; known ; N/A GL194865.1 samtools variation 42555 42555 . . . alleles " G A"; frequencies " 0.37199124726477 0.62800875273523"; depth 457 ; known ; N/A GL194865.1 samtools variation 43473 43473 . . . alleles " T A"; frequencies " 0.332231404958678 0.667768595041322"; depth 605 ; known ; N/A GL194865.1 samtools variation 43672 43672 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 32 ; known ; N/A GL194865.1 samtools variation 43820 43820 . . . alleles " C T"; frequencies " 0.784313725490196 0.215686274509804"; depth 102 ; known ; N/A GL194865.1 samtools variation 50606 50606 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 48 ; known ; non-synonymous GL194865.1 samtools variation 55362 55362 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL194865.1 samtools variation 56561 56561 . . . alleles " G A"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; unknown ; synonymous GL194865.1 samtools variation 57511 57511 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL194865.1 samtools variation 59085 59085 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; known ; N/A GL194865.1 samtools variation 59692 59692 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL194865.1 samtools variation 59843 59843 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL194865.1 samtools variation 59943 59943 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL194865.1 samtools variation 84506 84506 . . . alleles " T C"; frequencies " 0.438356164383562 0.561643835616438"; depth 73 ; unknown ; non-synonymous GL194865.1 samtools variation 84514 84514 . . . alleles " G A"; frequencies " 0.451219512195122 0.548780487804878"; depth 82 ; unknown ; non-synonymous GL194865.1 samtools variation 84583 84583 . . . alleles " G A"; frequencies " 0.794392523364486 0.205607476635514"; depth 107 ; unknown ; non-synonymous GL194865.1 samtools variation 84899 84899 . . . alleles " G A"; frequencies " 0.431818181818182 0.568181818181818"; depth 44 ; unknown ; synonymous GL194878.1 samtools variation 101121 101121 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL194882.1 samtools variation 499 499 . . . alleles " C T"; frequencies " 0.311111111111111 0.688888888888889"; depth 45 ; unknown ; N/A GL194882.1 samtools variation 1368 1368 . . . alleles " G C"; frequencies " 0.369565217391304 0.630434782608696"; depth 46 ; unknown ; synonymous GL194882.1 samtools variation 7399 7399 . . . alleles " G C"; frequencies " 0.778846153846154 0.221153846153846"; depth 104 ; unknown ; non-synonymous GL194882.1 samtools variation 7839 7839 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; unknown ; N/A GL194882.1 samtools variation 8177 8177 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 33 ; unknown ; N/A GL194882.1 samtools variation 8586 8586 . . . alleles " G A"; frequencies " 0.452380952380952 0.547619047619048"; depth 42 ; unknown ; N/A GL194882.1 samtools variation 9343 9343 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 65 ; unknown ; non-synonymous GL194882.1 samtools variation 9350 9350 . . . alleles " T C"; frequencies " 0.528089887640449 0.460674157303371"; depth 89 ; unknown ; synonymous GL194882.1 samtools variation 9379 9379 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 92 ; unknown ; non-synonymous GL194886.1 samtools variation 26776 26776 . . . alleles " T C"; frequencies " 0.718592964824121 0.281407035175879"; depth 199 ; known ; synonymous GL194895.1 samtools variation 110371 110371 . . . alleles " C T"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; non-synonymous GL194895.1 samtools variation 110374 110374 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; non-synonymous GL194901.1 samtools variation 15439 15439 . . . alleles " T C"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL194901.1 samtools variation 32901 32901 . . . alleles " G C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL194901.1 samtools variation 32940 32940 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL194901.1 samtools variation 39326 39326 . . . alleles " A G"; frequencies " 0.793650793650794 0.206349206349206"; depth 63 ; unknown ; synonymous GL194901.1 samtools variation 40559 40559 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 42 ; unknown ; N/A GL194901.1 samtools variation 40560 40560 . . . alleles " T C"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL194901.1 samtools variation 40934 40934 . . . alleles " A T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL194901.1 samtools variation 41184 41184 . . . alleles " T C"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL194901.1 samtools variation 41424 41424 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL194901.1 samtools variation 42030 42030 . . . alleles " T C"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; unknown ; N/A GL194901.1 samtools variation 97782 97782 . . . alleles " T C"; frequencies " 0.61038961038961 0.38961038961039"; depth 77 ; unknown ; N/A GL194901.1 samtools variation 100156 100156 . . . alleles " A G"; frequencies " 0.544117647058823 0.455882352941176"; depth 68 ; unknown ; N/A GL194901.1 samtools variation 100371 100371 . . . alleles " G C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL194901.1 samtools variation 100567 100567 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL194901.1 samtools variation 101545 101545 . . . alleles " T C"; frequencies " 0.414634146341463 0.585365853658537"; depth 41 ; unknown ; N/A GL194901.1 samtools variation 102586 102586 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL194901.1 samtools variation 102610 102610 . . . alleles " A C"; frequencies " 0.5625 0.4375"; depth 32 ; unknown ; N/A GL194901.1 samtools variation 104167 104167 . . . alleles " T C"; frequencies " 0.264705882352941 0.735294117647059"; depth 34 ; unknown ; N/A GL194901.1 samtools variation 104189 104189 . . . alleles " A C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL194910.1 samtools variation 9577 9577 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; known ; N/A GL194910.1 samtools variation 34600 34600 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 45 ; unknown ; N/A GL194910.1 samtools variation 40392 40392 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL194910.1 samtools variation 41056 41056 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 57 ; unknown ; N/A GL194910.1 samtools variation 41099 41099 . . . alleles " C T"; frequencies " 0.575757575757576 0.424242424242424"; depth 66 ; unknown ; N/A GL194910.1 samtools variation 41264 41264 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL194910.1 samtools variation 43279 43279 . . . alleles " A C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL194910.1 samtools variation 44576 44576 . . . alleles " A G"; frequencies " 0.597222222222222 0.402777777777778"; depth 144 ; unknown ; N/A GL194910.1 samtools variation 44581 44581 . . . alleles " T C"; frequencies " 0.605442176870748 0.387755102040816"; depth 147 ; unknown ; N/A GL194910.1 samtools variation 49496 49496 . . . alleles " C A"; frequencies " 0.702127659574468 0.297872340425532"; depth 47 ; unknown ; N/A GL194910.1 samtools variation 50193 50193 . . . alleles " A G"; frequencies " 0.479591836734694 0.520408163265306"; depth 98 ; unknown ; N/A GL194910.1 samtools variation 50272 50272 . . . alleles " C T"; frequencies " 0.471264367816092 0.528735632183908"; depth 87 ; unknown ; N/A GL194910.1 samtools variation 50533 50533 . . . alleles " A G"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL194910.1 samtools variation 51247 51247 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL194910.1 samtools variation 53287 53287 . . . alleles " T G"; frequencies " 0.489795918367347 0.510204081632653"; depth 49 ; unknown ; N/A GL194910.1 samtools variation 53390 53390 . . . alleles " C T"; frequencies " 0.491525423728814 0.508474576271186"; depth 59 ; unknown ; N/A GL194910.1 samtools variation 53402 53402 . . . alleles " T C"; frequencies " 0.483333333333333 0.516666666666667"; depth 60 ; unknown ; N/A GL194910.1 samtools variation 55223 55223 . . . alleles " C A"; frequencies " 0.51219512195122 0.48780487804878"; depth 41 ; unknown ; N/A GL194910.1 samtools variation 55503 55503 . . . alleles " G T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL194910.1 samtools variation 56794 56794 . . . alleles " G A"; frequencies " 0.392156862745098 0.607843137254902"; depth 51 ; unknown ; N/A GL194910.1 samtools variation 57627 57627 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL194910.1 samtools variation 59312 59312 . . . alleles " T G"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL194910.1 samtools variation 59436 59436 . . . alleles " T C"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL194910.1 samtools variation 60537 60537 . . . alleles " G A"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; unknown ; N/A GL194910.1 samtools variation 60568 60568 . . . alleles " G A"; frequencies " 0.553191489361702 0.446808510638298"; depth 47 ; unknown ; N/A GL194910.1 samtools variation 61015 61015 . . . alleles " T C"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL194910.1 samtools variation 61054 61054 . . . alleles " A G"; frequencies " 0.260416666666667 0.739583333333333"; depth 96 ; unknown ; N/A GL194910.1 samtools variation 61202 61202 . . . alleles " T C"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; unknown ; N/A GL194910.1 samtools variation 62053 62053 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL194910.1 samtools variation 72313 72313 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 25 ; known ; N/A GL194910.1 samtools variation 83263 83263 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL194916.1 samtools variation 71277 71277 . . . alleles " C T"; frequencies " 0.603448275862069 0.396551724137931"; depth 58 ; unknown ; N/A GL194919.1 samtools variation 24319 24319 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL194919.1 samtools variation 29006 29006 . . . alleles " C T"; frequencies " 0.68 0.32"; depth 25 ; unknown ; synonymous GL194921.1 samtools variation 89083 89083 . . . alleles " G A"; frequencies " 0.738461538461539 0.261538461538462"; depth 260 ; unknown ; N/A GL194924.1 samtools variation 16152 16152 . . . alleles " G C"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL194924.1 samtools variation 16706 16706 . . . alleles " A G"; frequencies " 0.395348837209302 0.604651162790698"; depth 43 ; unknown ; N/A GL194924.1 samtools variation 16788 16788 . . . alleles " A G"; frequencies " 0.325 0.675"; depth 40 ; unknown ; N/A GL194924.1 samtools variation 16960 16960 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; unknown ; N/A GL194924.1 samtools variation 17696 17696 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL194924.1 samtools variation 18926 18926 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL194924.1 samtools variation 19154 19154 . . . alleles " T G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL194924.1 samtools variation 19461 19461 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL194924.1 samtools variation 19510 19510 . . . alleles " C T"; frequencies " 0.53125 0.46875"; depth 32 ; unknown ; N/A GL194924.1 samtools variation 20591 20591 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL194925.1 samtools variation 31364 31364 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL194925.1 samtools variation 100616 100616 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 40 ; unknown ; non-synonymous GL194930.1 samtools variation 1137 1137 . . . alleles " A G"; frequencies " 0.371681415929204 0.628318584070796"; depth 113 ; unknown ; non-synonymous GL194934.1 samtools variation 47136 47136 . . . alleles " C T"; frequencies " 0.548192771084337 0.451807228915663"; depth 332 ; unknown ; N/A GL194934.1 samtools variation 49119 49119 . . . alleles " C T"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL194934.1 samtools variation 50418 50418 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL194934.1 samtools variation 50468 50468 . . . alleles " T C"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL194934.1 samtools variation 50987 50987 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL194934.1 samtools variation 73334 73334 . . . alleles " T A"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL194935.1 samtools variation 103214 103214 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL194938.1 samtools variation 20232 20232 . . . alleles " G C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL194948.1 samtools variation 71110 71110 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL194948.1 samtools variation 71302 71302 . . . alleles " G T"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL194948.1 samtools variation 87616 87616 . . . alleles " A G"; frequencies " 0.680555555555556 0.319444444444444"; depth 72 ; unknown ; synonymous GL194954.1 samtools variation 32627 32627 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 32 ; known ; N/A GL194954.1 samtools variation 32671 32671 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL194954.1 samtools variation 65235 65235 . . . alleles " A C"; frequencies " 0.534883720930233 0.465116279069767"; depth 43 ; known ; N/A GL194954.1 samtools variation 100672 100672 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL194954.1 samtools variation 101890 101890 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 15 ; known ; N/A GL194955.1 samtools variation 60156 60156 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL194955.1 samtools variation 61423 61423 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; synonymous GL194957.1 samtools variation 95036 95036 . . . alleles " C A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL194957.1 samtools variation 96313 96313 . . . alleles " T C"; frequencies " 0.632352941176471 0.367647058823529"; depth 136 ; unknown ; N/A GL194957.1 samtools variation 97677 97677 . . . alleles " C T"; frequencies " 0.623188405797101 0.376811594202899"; depth 69 ; known ; N/A GL194957.1 samtools variation 98469 98469 . . . alleles " G T"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL194958.1 samtools variation 104296 104296 . . . alleles " A T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL194960.1 samtools variation 42608 42608 . . . alleles " A G"; frequencies " 0.263157894736842 0.736842105263158"; depth 38 ; known ; synonymous GL194962.1 samtools variation 2809 2809 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL194962.1 samtools variation 3213 3213 . . . alleles " G T"; frequencies " 0.3125 0.6875"; depth 32 ; unknown ; N/A GL194962.1 samtools variation 19826 19826 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL194962.1 samtools variation 21515 21515 . . . alleles " T C"; frequencies " 0.351063829787234 0.648936170212766"; depth 94 ; known ; synonymous GL194962.1 samtools variation 34946 34946 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 16 ; known ; N/A GL194962.1 samtools variation 50393 50393 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL194962.1 samtools variation 80708 80708 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL194962.1 samtools variation 99585 99585 . . . alleles " T C"; frequencies " 0.632124352331606 0.367875647668394"; depth 193 ; known ; N/A GL194962.1 samtools variation 99803 99803 . . . alleles " C T"; frequencies " 0.403669724770642 0.596330275229358"; depth 109 ; known ; N/A GL194962.1 samtools variation 100168 100168 . . . alleles " A G"; frequencies " 0.70935960591133 0.29064039408867"; depth 203 ; unknown ; N/A GL194963.1 samtools variation 885 885 . . . alleles " G C"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; known ; N/A GL194967.1 samtools variation 8967 8967 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL194967.1 samtools variation 85867 85867 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL194969.1 samtools variation 32787 32787 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL194969.1 samtools variation 37661 37661 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; known ; N/A GL194969.1 samtools variation 38523 38523 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL194969.1 samtools variation 39980 39980 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL194969.1 samtools variation 41821 41821 . . . alleles " T C"; frequencies " 0.771863117870722 0.228136882129278"; depth 263 ; unknown ; non-synonymous GL194969.1 samtools variation 41978 41978 . . . alleles " T G"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; known ; N/A GL194969.1 samtools variation 43216 43216 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL194969.1 samtools variation 43983 43983 . . . alleles " C G"; frequencies " 0.666666666666667 0.333333333333333"; depth 54 ; known ; N/A GL194969.1 samtools variation 44772 44772 . . . alleles " G T"; frequencies " 0.790322580645161 0.209677419354839"; depth 62 ; unknown ; N/A GL194969.1 samtools variation 44982 44982 . . . alleles " G A"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; known ; N/A GL194969.1 samtools variation 46583 46583 . . . alleles " G A"; frequencies " 0.238095238095238 0.761904761904762"; depth 84 ; known ; N/A GL194969.1 samtools variation 46755 46755 . . . alleles " T C"; frequencies " 0.707509881422925 0.292490118577075"; depth 253 ; known ; N/A GL194969.1 samtools variation 46911 46911 . . . alleles " A G"; frequencies " 0.689655172413793 0.310344827586207"; depth 87 ; known ; N/A GL194969.1 samtools variation 47414 47414 . . . alleles " C T"; frequencies " 0.354838709677419 0.645161290322581"; depth 31 ; known ; N/A GL194969.1 samtools variation 47447 47447 . . . alleles " G A"; frequencies " 0.653061224489796 0.346938775510204"; depth 49 ; known ; N/A GL194969.1 samtools variation 47500 47500 . . . alleles " A T"; frequencies " 0.297297297297297 0.702702702702703"; depth 37 ; known ; N/A GL194969.1 samtools variation 47572 47572 . . . alleles " C T"; frequencies " 0.64 0.36"; depth 25 ; known ; N/A GL194969.1 samtools variation 47610 47610 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL194969.1 samtools variation 47973 47973 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL194969.1 samtools variation 49979 49979 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL194969.1 samtools variation 50696 50696 . . . alleles " C T"; frequencies " 0.273809523809524 0.726190476190476"; depth 84 ; known ; N/A GL194969.1 samtools variation 50802 50802 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 64 ; known ; N/A GL194969.1 samtools variation 51291 51291 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 36 ; known ; N/A GL194969.1 samtools variation 52936 52936 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL194969.1 samtools variation 53895 53895 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL194969.1 samtools variation 56530 56530 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 91 ; unknown ; N/A GL194969.1 samtools variation 56707 56707 . . . alleles " G T"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL194969.1 samtools variation 58735 58735 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; known ; N/A GL194969.1 samtools variation 59751 59751 . . . alleles " A T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL194969.1 samtools variation 59861 59861 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL194969.1 samtools variation 60475 60475 . . . alleles " C T"; frequencies " 0.387755102040816 0.612244897959184"; depth 49 ; known ; N/A GL194969.1 samtools variation 60512 60512 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 44 ; unknown ; N/A GL194969.1 samtools variation 60515 60515 . . . alleles " C T"; frequencies " 0.613636363636364 0.386363636363636"; depth 44 ; unknown ; N/A GL194969.1 samtools variation 60547 60547 . . . alleles " G A"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; known ; N/A GL194969.1 samtools variation 60678 60678 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL194969.1 samtools variation 61072 61072 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL194969.1 samtools variation 61136 61136 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL194969.1 samtools variation 61201 61201 . . . alleles " A G"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; known ; N/A GL194969.1 samtools variation 61221 61221 . . . alleles " C A"; frequencies " 0.555555555555556 0.444444444444444"; depth 36 ; known ; N/A GL194969.1 samtools variation 61262 61262 . . . alleles " C G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL194969.1 samtools variation 61282 61282 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 25 ; known ; N/A GL194969.1 samtools variation 61319 61319 . . . alleles " G A"; frequencies " 0.44 0.56"; depth 25 ; known ; N/A GL194969.1 samtools variation 61355 61355 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL194969.1 samtools variation 63544 63544 . . . alleles " C T"; frequencies " 0.747368421052632 0.252631578947368"; depth 95 ; known ; synonymous GL194973.1 samtools variation 88715 88715 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL194975.1 samtools variation 98767 98767 . . . alleles " T C"; frequencies " 0.329113924050633 0.670886075949367"; depth 79 ; known ; synonymous GL194975.1 samtools variation 99129 99129 . . . alleles " C G"; frequencies " 0.773584905660377 0.226415094339623"; depth 53 ; known ; N/A GL194975.1 samtools variation 99280 99280 . . . alleles " G A"; frequencies " 0.289855072463768 0.710144927536232"; depth 276 ; known ; N/A GL194976.1 samtools variation 18655 18655 . . . alleles " A C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; known ; N/A GL194976.1 samtools variation 76137 76137 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL194976.1 samtools variation 76192 76192 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL194976.1 samtools variation 77347 77347 . . . alleles " T G"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL194976.1 samtools variation 81146 81146 . . . alleles " T C"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL194979.1 samtools variation 48906 48906 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 231 ; known ; N/A GL194979.1 samtools variation 49126 49126 . . . alleles " A G"; frequencies " 0.702702702702703 0.297297297297297"; depth 148 ; known ; N/A GL194979.1 samtools variation 73609 73609 . . . alleles " T A"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL194979.1 samtools variation 73826 73826 . . . alleles " G C"; frequencies " 0.615384615384615 0.384615384615385"; depth 117 ; unknown ; N/A GL194979.1 samtools variation 76564 76564 . . . alleles " G A"; frequencies " 0.786885245901639 0.213114754098361"; depth 793 ; unknown ; N/A GL194979.1 samtools variation 77260 77260 . . . alleles " T C"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; unknown ; N/A GL194982.1 samtools variation 31443 31443 . . . alleles " T G"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; known ; N/A GL194982.1 samtools variation 32165 32165 . . . alleles " T C"; frequencies " 0.78 0.22"; depth 50 ; known ; N/A GL194982.1 samtools variation 35153 35153 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 132 ; known ; N/A GL194982.1 samtools variation 35250 35250 . . . alleles " C T"; frequencies " 0.510869565217391 0.489130434782609"; depth 92 ; known ; N/A GL194986.1 samtools variation 17370 17370 . . . alleles " C T"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL194986.1 samtools variation 36825 36825 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL194986.1 samtools variation 51671 51671 . . . alleles " G A"; frequencies " 0.440453686200378 0.559546313799622"; depth 529 ; unknown ; synonymous GL194986.1 samtools variation 52190 52190 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL194993.1 samtools variation 20244 20244 . . . alleles " T A"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL194993.1 samtools variation 63524 63524 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL194993.1 samtools variation 64298 64298 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL194993.1 samtools variation 69054 69054 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 108 ; unknown ; N/A GL194993.1 samtools variation 69162 69162 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 46 ; unknown ; N/A GL194993.1 samtools variation 69813 69813 . . . alleles " A C"; frequencies " 0.617977528089888 0.382022471910112"; depth 89 ; unknown ; N/A GL194993.1 samtools variation 69899 69899 . . . alleles " C T"; frequencies " 0.617886178861789 0.382113821138211"; depth 123 ; unknown ; N/A GL194993.1 samtools variation 70161 70161 . . . alleles " G A"; frequencies " 0.716417910447761 0.283582089552239"; depth 67 ; unknown ; N/A GL194993.1 samtools variation 70301 70301 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 20 ; known ; N/A GL194993.1 samtools variation 70906 70906 . . . alleles " A G"; frequencies " 0.38 0.62"; depth 100 ; unknown ; N/A GL194993.1 samtools variation 71024 71024 . . . alleles " C T"; frequencies " 0.539325842696629 0.460674157303371"; depth 178 ; unknown ; N/A GL194993.1 samtools variation 71122 71122 . . . alleles " G A"; frequencies " 0.561643835616438 0.438356164383562"; depth 219 ; unknown ; N/A GL194993.1 samtools variation 72225 72225 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; N/A GL194993.1 samtools variation 72327 72327 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL194993.1 samtools variation 72658 72658 . . . alleles " G A"; frequencies " 0.603550295857988 0.396449704142012"; depth 169 ; unknown ; N/A GL194993.1 samtools variation 72781 72781 . . . alleles " G A"; frequencies " 0.531446540880503 0.468553459119497"; depth 318 ; unknown ; N/A GL194993.1 samtools variation 72962 72962 . . . alleles " G T"; frequencies " 0.608108108108108 0.391891891891892"; depth 222 ; unknown ; N/A GL194993.1 samtools variation 73357 73357 . . . alleles " T A"; frequencies " 0.557692307692308 0.442307692307692"; depth 52 ; unknown ; N/A GL194994.1 samtools variation 94291 94291 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL194994.1 samtools variation 94666 94666 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 32 ; unknown ; N/A GL195000.1 samtools variation 50964 50964 . . . alleles " T A"; frequencies " 0.545454545454545 0.454545454545455"; depth 55 ; known ; N/A GL195000.1 samtools variation 51189 51189 . . . alleles " C T"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL195006.1 samtools variation 43027 43027 . . . alleles " T G"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL195006.1 samtools variation 44575 44575 . . . alleles " A G"; frequencies " 0.714285714285714 0.285714285714286"; depth 77 ; known ; N/A GL195008.1 samtools variation 44461 44461 . . . alleles " A G"; frequencies " 0.780952380952381 0.219047619047619"; depth 105 ; known ; N/A GL195008.1 samtools variation 50237 50237 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL195008.1 samtools variation 51104 51104 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 32 ; known ; N/A GL195013.1 samtools variation 56996 56996 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL195024.1 samtools variation 88842 88842 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL195024.1 samtools variation 88861 88861 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL195026.1 samtools variation 4493 4493 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL195026.1 samtools variation 50365 50365 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 260 ; unknown ; non-synonymous GL195036.1 samtools variation 4222 4222 . . . alleles " G C"; frequencies " 0.45 0.55"; depth 40 ; unknown ; N/A GL195036.1 samtools variation 4866 4866 . . . alleles " T C"; frequencies " 0.583333333333333 0.416666666666667"; depth 36 ; unknown ; N/A GL195036.1 samtools variation 4870 4870 . . . alleles " G A"; frequencies " 0.594594594594595 0.405405405405405"; depth 37 ; unknown ; N/A GL195036.1 samtools variation 5374 5374 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL195036.1 samtools variation 5428 5428 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL195036.1 samtools variation 5474 5474 . . . alleles " A G"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL195036.1 samtools variation 27071 27071 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL195039.1 samtools variation 646 646 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL195039.1 samtools variation 50539 50539 . . . alleles " G C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL195043.1 samtools variation 11563 11563 . . . alleles " A T"; frequencies " 0.705882352941177 0.294117647058824"; depth 51 ; unknown ; N/A GL195043.1 samtools variation 11949 11949 . . . alleles " C A"; frequencies " 0.23728813559322 0.76271186440678"; depth 118 ; known ; N/A GL195043.1 samtools variation 14473 14473 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL195043.1 samtools variation 18481 18481 . . . alleles " A G"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; known ; N/A GL195043.1 samtools variation 18780 18780 . . . alleles " T C"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; known ; N/A GL195043.1 samtools variation 47572 47572 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 119 ; unknown ; non-synonymous GL195043.1 samtools variation 51816 51816 . . . alleles " T C"; frequencies " 0.32 0.68"; depth 25 ; known ; N/A GL195043.1 samtools variation 51902 51902 . . . alleles " A G"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL195043.1 samtools variation 51928 51928 . . . alleles " A G"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL195043.1 samtools variation 52385 52385 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL195043.1 samtools variation 52403 52403 . . . alleles " C T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL195043.1 samtools variation 62922 62922 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL195043.1 samtools variation 76273 76273 . . . alleles " C T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; synonymous GL195044.1 samtools variation 13704 13704 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL195044.1 samtools variation 13772 13772 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; known ; N/A GL195044.1 samtools variation 15150 15150 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; known ; N/A GL195044.1 samtools variation 15722 15722 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL195044.1 samtools variation 17475 17475 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; non-synonymous GL195044.1 samtools variation 17492 17492 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; synonymous GL195044.1 samtools variation 49810 49810 . . . alleles " G C"; frequencies " 0.247311827956989 0.752688172043011"; depth 93 ; unknown ; N/A GL195044.1 samtools variation 61054 61054 . . . alleles " G A"; frequencies " 0.756172839506173 0.243827160493827"; depth 324 ; unknown ; synonymous GL195044.1 samtools variation 61753 61753 . . . alleles " G A"; frequencies " 0.768166089965398 0.231833910034602"; depth 289 ; unknown ; non-synonymous GL195044.1 samtools variation 62131 62131 . . . alleles " G T"; frequencies " 0.462925851703407 0.537074148296593"; depth 499 ; unknown ; synonymous GL195044.1 samtools variation 62497 62497 . . . alleles " A G"; frequencies " 0.381443298969072 0.618556701030928"; depth 291 ; unknown ; synonymous GL195044.1 samtools variation 62571 62571 . . . alleles " C T"; frequencies " 0.391752577319588 0.608247422680412"; depth 291 ; unknown ; non-synonymous GL195044.1 samtools variation 63475 63475 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL195044.1 samtools variation 64370 64370 . . . alleles " G A"; frequencies " 0.408450704225352 0.591549295774648"; depth 71 ; known ; N/A GL195045.1 samtools variation 40115 40115 . . . alleles " C A"; frequencies " 0.372641509433962 0.627358490566038"; depth 212 ; unknown ; synonymous GL195045.1 samtools variation 69574 69574 . . . alleles " A G"; frequencies " 0.515151515151515 0.484848484848485"; depth 66 ; unknown ; N/A GL195045.1 samtools variation 70180 70180 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL195045.1 samtools variation 77346 77346 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL195045.1 samtools variation 82385 82385 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL195045.1 samtools variation 82660 82660 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL195051.1 samtools variation 62383 62383 . . . alleles " T C"; frequencies " 0.747716894977169 0.252283105022831"; depth 876 ; known ; N/A GL195051.1 samtools variation 63300 63300 . . . alleles " C G"; frequencies " 0.594142259414226 0.403765690376569"; depth 478 ; unknown ; N/A GL195051.1 samtools variation 63346 63346 . . . alleles " A G"; frequencies " 0.798701298701299 0.201298701298701"; depth 308 ; known ; N/A GL195051.1 samtools variation 63659 63659 . . . alleles " G A"; frequencies " 0.539325842696629 0.460674157303371"; depth 89 ; unknown ; N/A GL195051.1 samtools variation 64009 64009 . . . alleles " G A"; frequencies " 0.557324840764331 0.442675159235669"; depth 628 ; unknown ; N/A GL195051.1 samtools variation 65530 65530 . . . alleles " T C"; frequencies " 0.674897119341564 0.325102880658436"; depth 486 ; unknown ; non-synonymous GL195051.1 samtools variation 80978 80978 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 30 ; known ; N/A GL195051.1 samtools variation 82219 82219 . . . alleles " T C"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL195051.1 samtools variation 82274 82274 . . . alleles " C G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL195051.1 samtools variation 82405 82405 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; known ; N/A GL195051.1 samtools variation 83224 83224 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; known ; N/A GL195051.1 samtools variation 83362 83362 . . . alleles " A G"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; known ; N/A GL195051.1 samtools variation 84817 84817 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 26 ; known ; N/A GL195051.1 samtools variation 85063 85063 . . . alleles " C T"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL195051.1 samtools variation 85819 85819 . . . alleles " C T"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; known ; N/A GL195051.1 samtools variation 85859 85859 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL195056.1 samtools variation 74801 74801 . . . alleles " G A"; frequencies " 0.634920634920635 0.365079365079365"; depth 63 ; unknown ; synonymous GL195056.1 samtools variation 74828 74828 . . . alleles " G A"; frequencies " 0.464285714285714 0.535714285714286"; depth 56 ; unknown ; synonymous GL195064.1 samtools variation 77433 77433 . . . alleles " T C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; known ; synonymous GL195068.1 samtools variation 33992 33992 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL195068.1 samtools variation 53314 53314 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 42 ; unknown ; N/A GL195068.1 samtools variation 53333 53333 . . . alleles " A G"; frequencies " 0.36 0.64"; depth 50 ; unknown ; N/A GL195068.1 samtools variation 53711 53711 . . . alleles " A G"; frequencies " 0.290322580645161 0.709677419354839"; depth 124 ; unknown ; non-synonymous GL195068.1 samtools variation 53730 53730 . . . alleles " G C"; frequencies " 0.296610169491525 0.703389830508475"; depth 118 ; unknown ; non-synonymous GL195068.1 samtools variation 54229 54229 . . . alleles " G C"; frequencies " 0.281081081081081 0.718918918918919"; depth 185 ; unknown ; synonymous GL195068.1 samtools variation 55422 55422 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 34 ; unknown ; N/A GL195068.1 samtools variation 55668 55668 . . . alleles " A G"; frequencies " 0.242424242424242 0.757575757575758"; depth 33 ; unknown ; N/A GL195068.1 samtools variation 55851 55851 . . . alleles " G A"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL195068.1 samtools variation 56359 56359 . . . alleles " C G"; frequencies " 0.244444444444444 0.755555555555556"; depth 45 ; unknown ; N/A GL195077.1 samtools variation 26473 26473 . . . alleles " G C"; frequencies " 0.245283018867925 0.754716981132076"; depth 53 ; known ; non-synonymous GL195077.1 samtools variation 26631 26631 . . . alleles " G A"; frequencies " 0.658823529411765 0.341176470588235"; depth 85 ; known ; non-synonymous GL195077.1 samtools variation 45174 45174 . . . alleles " A G"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; non-synonymous GL195079.1 samtools variation 27661 27661 . . . alleles " G T"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; unknown ; N/A GL195079.1 samtools variation 40593 40593 . . . alleles " G A"; frequencies " 0.449438202247191 0.550561797752809"; depth 89 ; unknown ; non-synonymous GL195088.1 samtools variation 27908 27908 . . . alleles " C G"; frequencies " 0.435374149659864 0.557823129251701"; depth 147 ; unknown ; synonymous GL195088.1 samtools variation 27923 27923 . . . alleles " T C"; frequencies " 0.254054054054054 0.745945945945946"; depth 185 ; unknown ; synonymous GL195088.1 samtools variation 32244 32244 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL195088.1 samtools variation 36495 36495 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL195088.1 samtools variation 41840 41840 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; known ; N/A GL195088.1 samtools variation 42912 42912 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL195088.1 samtools variation 42938 42938 . . . alleles " T A"; frequencies " 0.2 0.8"; depth 20 ; known ; N/A GL195088.1 samtools variation 43075 43075 . . . alleles " A G"; frequencies " 0.429594272076372 0.570405727923628"; depth 419 ; known ; non-synonymous GL195088.1 samtools variation 43090 43090 . . . alleles " G C"; frequencies " 0.431603773584906 0.568396226415094"; depth 424 ; known ; non-synonymous GL195088.1 samtools variation 45146 45146 . . . alleles " T A"; frequencies " 0.402234636871508 0.597765363128492"; depth 358 ; known ; N/A GL195088.1 samtools variation 63905 63905 . . . alleles " T C"; frequencies " 0.674418604651163 0.325581395348837"; depth 43 ; known ; N/A GL195088.1 samtools variation 74152 74152 . . . alleles " A T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; non-synonymous GL195090.1 samtools variation 902 902 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL195090.1 samtools variation 940 940 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL195090.1 samtools variation 19354 19354 . . . alleles " A G"; frequencies " 0.565217391304348 0.434782608695652"; depth 69 ; unknown ; N/A GL195090.1 samtools variation 21712 21712 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL195090.1 samtools variation 21762 21762 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL195090.1 samtools variation 22901 22901 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL195090.1 samtools variation 44072 44072 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 55 ; unknown ; N/A GL195090.1 samtools variation 44372 44372 . . . alleles " T C"; frequencies " 0.351351351351351 0.648648648648649"; depth 37 ; unknown ; N/A GL195090.1 samtools variation 45605 45605 . . . alleles " A G"; frequencies " 0.339943342776204 0.660056657223796"; depth 353 ; unknown ; N/A GL195090.1 samtools variation 45618 45618 . . . alleles " T C"; frequencies " 0.338983050847458 0.661016949152542"; depth 354 ; unknown ; N/A GL195090.1 samtools variation 45990 45990 . . . alleles " G A"; frequencies " 0.209039548022599 0.790960451977401"; depth 177 ; unknown ; N/A GL195090.1 samtools variation 46913 46913 . . . alleles " C T"; frequencies " 0.732217573221757 0.267782426778243"; depth 717 ; unknown ; non-synonymous GL195090.1 samtools variation 53258 53258 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL195090.1 samtools variation 73175 73175 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL195090.1 samtools variation 73206 73206 . . . alleles " A C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL195092.1 samtools variation 9118 9118 . . . alleles " T C"; frequencies " 0.588235294117647 0.411764705882353"; depth 34 ; known ; N/A GL195092.1 samtools variation 9159 9159 . . . alleles " G A"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; known ; N/A GL195092.1 samtools variation 10577 10577 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; known ; N/A GL195092.1 samtools variation 11514 11514 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL195092.1 samtools variation 14312 14312 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; synonymous GL195092.1 samtools variation 14332 14332 . . . alleles " G A"; frequencies " 0.35 0.65"; depth 20 ; known ; non-synonymous GL195092.1 samtools variation 17858 17858 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL195096.1 samtools variation 13006 13006 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL195096.1 samtools variation 18859 18859 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL195096.1 samtools variation 19201 19201 . . . alleles " C T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL195096.1 samtools variation 19771 19771 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL195096.1 samtools variation 19792 19792 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL195096.1 samtools variation 20531 20531 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL195096.1 samtools variation 22056 22056 . . . alleles " G C"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; known ; N/A GL195096.1 samtools variation 24316 24316 . . . alleles " A T"; frequencies " 0.362068965517241 0.637931034482759"; depth 58 ; unknown ; N/A GL195096.1 samtools variation 24804 24804 . . . alleles " G A"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; known ; N/A GL195096.1 samtools variation 25283 25283 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL195096.1 samtools variation 25343 25343 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL195096.1 samtools variation 25923 25923 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL195096.1 samtools variation 27214 27214 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL195096.1 samtools variation 27607 27607 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL195096.1 samtools variation 27653 27653 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL195096.1 samtools variation 28626 28626 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL195096.1 samtools variation 28659 28659 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL195096.1 samtools variation 28778 28778 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL195096.1 samtools variation 28915 28915 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL195096.1 samtools variation 32361 32361 . . . alleles " T C"; frequencies " 0.605839416058394 0.394160583941606"; depth 137 ; unknown ; N/A GL195096.1 samtools variation 33661 33661 . . . alleles " C T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; known ; N/A GL195096.1 samtools variation 34007 34007 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL195096.1 samtools variation 34057 34057 . . . alleles " G T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL195096.1 samtools variation 34093 34093 . . . alleles " G A"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL195096.1 samtools variation 34110 34110 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL195096.1 samtools variation 34463 34463 . . . alleles " T C"; frequencies " 0.745454545454545 0.254545454545455"; depth 55 ; known ; N/A GL195096.1 samtools variation 35096 35096 . . . alleles " T C"; frequencies " 0.271255060728745 0.728744939271255"; depth 247 ; known ; N/A GL195096.1 samtools variation 35515 35515 . . . alleles " A G"; frequencies " 0.746268656716418 0.253731343283582"; depth 67 ; unknown ; N/A GL195096.1 samtools variation 35973 35973 . . . alleles " G A"; frequencies " 0.346153846153846 0.653846153846154"; depth 26 ; known ; N/A GL195096.1 samtools variation 36950 36950 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL195096.1 samtools variation 37305 37305 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL195096.1 samtools variation 37485 37485 . . . alleles " G C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL195096.1 samtools variation 38783 38783 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL195096.1 samtools variation 39844 39844 . . . alleles " T C"; frequencies " 0.608333333333333 0.391666666666667"; depth 120 ; known ; N/A GL195096.1 samtools variation 40368 40368 . . . alleles " G C"; frequencies " 0.297169811320755 0.702830188679245"; depth 212 ; unknown ; N/A GL195096.1 samtools variation 40370 40370 . . . alleles " G T"; frequencies " 0.295774647887324 0.704225352112676"; depth 213 ; unknown ; N/A GL195096.1 samtools variation 40780 40780 . . . alleles " T G"; frequencies " 0.477272727272727 0.522727272727273"; depth 44 ; known ; N/A GL195096.1 samtools variation 41454 41454 . . . alleles " A G"; frequencies " 0.382978723404255 0.617021276595745"; depth 47 ; known ; N/A GL195096.1 samtools variation 42440 42440 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL195096.1 samtools variation 42447 42447 . . . alleles " A C"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; known ; N/A GL195096.1 samtools variation 42695 42695 . . . alleles " C T"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; unknown ; N/A GL195096.1 samtools variation 43280 43280 . . . alleles " G A"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL195096.1 samtools variation 43326 43326 . . . alleles " C G"; frequencies " 0.681818181818182 0.318181818181818"; depth 44 ; unknown ; N/A GL195096.1 samtools variation 43358 43358 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 39 ; unknown ; N/A GL195096.1 samtools variation 43592 43592 . . . alleles " T C"; frequencies " 0.758620689655172 0.241379310344828"; depth 174 ; unknown ; N/A GL195096.1 samtools variation 43664 43664 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 161 ; unknown ; N/A GL195096.1 samtools variation 43785 43785 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 60 ; unknown ; N/A GL195096.1 samtools variation 43977 43977 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL195096.1 samtools variation 43978 43978 . . . alleles " A T"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL195096.1 samtools variation 45978 45978 . . . alleles " G A"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL195096.1 samtools variation 46507 46507 . . . alleles " G T"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL195096.1 samtools variation 48358 48358 . . . alleles " C G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; known ; N/A GL195096.1 samtools variation 48666 48666 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; known ; N/A GL195096.1 samtools variation 49825 49825 . . . alleles " C A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; known ; N/A GL195096.1 samtools variation 51305 51305 . . . alleles " C T"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; unknown ; N/A GL195096.1 samtools variation 51308 51308 . . . alleles " T A"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; unknown ; N/A GL195096.1 samtools variation 53379 53379 . . . alleles " C A"; frequencies " 0.448275862068966 0.551724137931034"; depth 29 ; known ; N/A GL195096.1 samtools variation 53457 53457 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 35 ; unknown ; N/A GL195096.1 samtools variation 54152 54152 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL195096.1 samtools variation 54409 54409 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL195096.1 samtools variation 55151 55151 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL195096.1 samtools variation 56220 56220 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL195096.1 samtools variation 56235 56235 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL195096.1 samtools variation 56976 56976 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL195096.1 samtools variation 60020 60020 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL195096.1 samtools variation 60034 60034 . . . alleles " A G"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL195096.1 samtools variation 60573 60573 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL195096.1 samtools variation 60778 60778 . . . alleles " T C"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL195096.1 samtools variation 62451 62451 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL195096.1 samtools variation 62543 62543 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; known ; N/A GL195096.1 samtools variation 62597 62597 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL195096.1 samtools variation 62618 62618 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; known ; N/A GL195096.1 samtools variation 74885 74885 . . . alleles " G A"; frequencies " 0.429245283018868 0.570754716981132"; depth 424 ; known ; N/A GL195096.1 samtools variation 75439 75439 . . . alleles " T C"; frequencies " 0.594972067039106 0.405027932960894"; depth 358 ; known ; N/A GL195096.1 samtools variation 75926 75926 . . . alleles " T C"; frequencies " 0.789617486338798 0.210382513661202"; depth 366 ; known ; N/A GL195096.1 samtools variation 76502 76502 . . . alleles " A T"; frequencies " 0.330543933054393 0.669456066945607"; depth 239 ; known ; N/A GL195096.1 samtools variation 76722 76722 . . . alleles " T C"; frequencies " 0.403225806451613 0.596774193548387"; depth 62 ; known ; N/A GL195096.1 samtools variation 76755 76755 . . . alleles " G A"; frequencies " 0.662162162162162 0.337837837837838"; depth 74 ; known ; N/A GL195096.1 samtools variation 76772 76772 . . . alleles " C A"; frequencies " 0.415584415584416 0.584415584415584"; depth 77 ; known ; N/A GL195096.1 samtools variation 76822 76822 . . . alleles " T G"; frequencies " 0.326086956521739 0.673913043478261"; depth 92 ; known ; N/A GL195096.1 samtools variation 76843 76843 . . . alleles " A G"; frequencies " 0.337662337662338 0.662337662337662"; depth 77 ; known ; N/A GL195096.1 samtools variation 76931 76931 . . . alleles " G C"; frequencies " 0.650793650793651 0.349206349206349"; depth 63 ; known ; N/A GL195096.1 samtools variation 76983 76983 . . . alleles " A G"; frequencies " 0.59375 0.40625"; depth 32 ; known ; N/A GL195096.1 samtools variation 77007 77007 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 35 ; known ; N/A GL195096.1 samtools variation 77381 77381 . . . alleles " G A"; frequencies " 0.644736842105263 0.355263157894737"; depth 76 ; known ; N/A GL195096.1 samtools variation 78237 78237 . . . alleles " T C"; frequencies " 0.652173913043478 0.340579710144928"; depth 138 ; known ; N/A GL195096.1 samtools variation 78512 78512 . . . alleles " G A"; frequencies " 0.696048632218845 0.303951367781155"; depth 329 ; unknown ; N/A GL195096.1 samtools variation 79243 79243 . . . alleles " A G"; frequencies " 0.67843137254902 0.32156862745098"; depth 255 ; known ; N/A GL195096.1 samtools variation 80196 80196 . . . alleles " G A"; frequencies " 0.702702702702703 0.297297297297297"; depth 37 ; unknown ; N/A GL195098.1 samtools variation 13433 13433 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL195099.1 samtools variation 41821 41821 . . . alleles " G A"; frequencies " 0.295918367346939 0.704081632653061"; depth 98 ; unknown ; N/A GL195099.1 samtools variation 43452 43452 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL195100.1 samtools variation 16295 16295 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL195100.1 samtools variation 16692 16692 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL195100.1 samtools variation 17679 17679 . . . alleles " G C"; frequencies " 0.600896860986547 0.399103139013453"; depth 223 ; unknown ; non-synonymous GL195100.1 samtools variation 18503 18503 . . . alleles " C T"; frequencies " 0.644230769230769 0.355769230769231"; depth 104 ; unknown ; N/A GL195106.1 samtools variation 6101 6101 . . . alleles " C G"; frequencies " 0.375 0.625"; depth 48 ; unknown ; N/A GL195106.1 samtools variation 6109 6109 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 48 ; unknown ; N/A GL195106.1 samtools variation 6183 6183 . . . alleles " C G"; frequencies " 0.573333333333333 0.426666666666667"; depth 75 ; unknown ; N/A GL195111.1 samtools variation 35503 35503 . . . alleles " A G"; frequencies " 0.775280898876405 0.224719101123595"; depth 89 ; unknown ; synonymous GL195111.1 samtools variation 56791 56791 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL195116.1 samtools variation 46296 46296 . . . alleles " G A"; frequencies " 0.577235772357724 0.422764227642276"; depth 369 ; unknown ; synonymous GL195116.1 samtools variation 54024 54024 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL195117.1 samtools variation 40204 40204 . . . alleles " T C"; frequencies " 0.786516853932584 0.213483146067416"; depth 89 ; unknown ; N/A GL195129.1 samtools variation 70782 70782 . . . alleles " C A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL195138.1 samtools variation 60549 60549 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL195138.1 samtools variation 62338 62338 . . . alleles " G T"; frequencies " 0.552631578947368 0.447368421052632"; depth 38 ; unknown ; N/A GL195138.1 samtools variation 64406 64406 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL195142.1 samtools variation 72761 72761 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 65 ; unknown ; synonymous GL195142.1 samtools variation 72870 72870 . . . alleles " G C"; frequencies " 0.676056338028169 0.323943661971831"; depth 71 ; unknown ; non-synonymous GL195142.1 samtools variation 72984 72984 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 85 ; unknown ; non-synonymous GL195142.1 samtools variation 73248 73248 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; non-synonymous GL195151.1 samtools variation 52389 52389 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL195151.1 samtools variation 59520 59520 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 12 ; known ; N/A GL195151.1 samtools variation 59550 59550 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL195151.1 samtools variation 60452 60452 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL195151.1 samtools variation 60453 60453 . . . alleles " G C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL195151.1 samtools variation 68090 68090 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL195156.1 samtools variation 9311 9311 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; known ; N/A GL195156.1 samtools variation 11576 11576 . . . alleles " T C"; frequencies " 0.441860465116279 0.558139534883721"; depth 43 ; known ; N/A GL195156.1 samtools variation 15612 15612 . . . alleles " G C"; frequencies " 0.690789473684211 0.309210526315789"; depth 152 ; unknown ; N/A GL195156.1 samtools variation 26906 26906 . . . alleles " T C"; frequencies " 0.622047244094488 0.377952755905512"; depth 127 ; known ; N/A GL195156.1 samtools variation 27056 27056 . . . alleles " T A"; frequencies " 0.676056338028169 0.323943661971831"; depth 142 ; known ; N/A GL195156.1 samtools variation 28492 28492 . . . alleles " G C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL195156.1 samtools variation 42637 42637 . . . alleles " T C"; frequencies " 0.627450980392157 0.372549019607843"; depth 51 ; unknown ; non-synonymous GL195156.1 samtools variation 49664 49664 . . . alleles " T C"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; known ; synonymous GL195173.1 samtools variation 21686 21686 . . . alleles " G A"; frequencies " 0.704545454545455 0.295454545454545"; depth 44 ; known ; N/A GL195173.1 samtools variation 22078 22078 . . . alleles " A G"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; N/A GL195173.1 samtools variation 22355 22355 . . . alleles " G A"; frequencies " 0.604651162790698 0.395348837209302"; depth 43 ; unknown ; N/A GL195173.1 samtools variation 22437 22437 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 25 ; known ; N/A GL195173.1 samtools variation 36051 36051 . . . alleles " A C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL195173.1 samtools variation 36068 36068 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; known ; N/A GL195173.1 samtools variation 38963 38963 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; synonymous GL195174.1 samtools variation 9409 9409 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL195174.1 samtools variation 42619 42619 . . . alleles " C G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL195174.1 samtools variation 47735 47735 . . . alleles " T C"; frequencies " 0.406779661016949 0.593220338983051"; depth 59 ; known ; N/A GL195174.1 samtools variation 47767 47767 . . . alleles " A C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; known ; N/A GL195174.1 samtools variation 47784 47784 . . . alleles " C T"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; known ; N/A GL195174.1 samtools variation 47912 47912 . . . alleles " G A"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; N/A GL195174.1 samtools variation 50264 50264 . . . alleles " T A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL195174.1 samtools variation 50831 50831 . . . alleles " A G"; frequencies " 0.240157480314961 0.759842519685039"; depth 254 ; known ; N/A GL195175.1 samtools variation 40279 40279 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; non-synonymous GL195175.1 samtools variation 48185 48185 . . . alleles " G A"; frequencies " 0.641025641025641 0.358974358974359"; depth 39 ; unknown ; non-synonymous GL195175.1 samtools variation 48356 48356 . . . alleles " T C"; frequencies " 0.398058252427184 0.601941747572815"; depth 103 ; unknown ; non-synonymous GL195175.1 samtools variation 48388 48388 . . . alleles " C T"; frequencies " 0.378787878787879 0.621212121212121"; depth 132 ; unknown ; synonymous GL195175.1 samtools variation 58469 58469 . . . alleles " C T"; frequencies " 0.290697674418605 0.709302325581395"; depth 86 ; unknown ; synonymous GL195177.1 samtools variation 34902 34902 . . . alleles " T C"; frequencies " 0.78494623655914 0.21505376344086"; depth 93 ; unknown ; N/A GL195177.1 samtools variation 35515 35515 . . . alleles " G T"; frequencies " 0.788135593220339 0.211864406779661"; depth 118 ; unknown ; N/A GL195177.1 samtools variation 35672 35672 . . . alleles " A G"; frequencies " 0.632478632478632 0.367521367521368"; depth 117 ; unknown ; N/A GL195177.1 samtools variation 36743 36743 . . . alleles " G T"; frequencies " 0.696969696969697 0.303030303030303"; depth 66 ; unknown ; N/A GL195177.1 samtools variation 37073 37073 . . . alleles " C T"; frequencies " 0.633333333333333 0.366666666666667"; depth 60 ; unknown ; N/A GL195180.1 samtools variation 5081 5081 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL195180.1 samtools variation 5089 5089 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL195180.1 samtools variation 27793 27793 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL195180.1 samtools variation 27803 27803 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL195185.1 samtools variation 6021 6021 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 60 ; unknown ; N/A GL195185.1 samtools variation 68178 68178 . . . alleles " T C"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; synonymous GL195189.1 samtools variation 16595 16595 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL195189.1 samtools variation 29213 29213 . . . alleles " C T"; frequencies " 0.418604651162791 0.581395348837209"; depth 86 ; known ; N/A GL195194.1 samtools variation 8366 8366 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL195194.1 samtools variation 38746 38746 . . . alleles " G A"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL195194.1 samtools variation 49446 49446 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL195194.1 samtools variation 49849 49849 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 32 ; unknown ; N/A GL195194.1 samtools variation 52792 52792 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 90 ; unknown ; N/A GL195194.1 samtools variation 53134 53134 . . . alleles " T C"; frequencies " 0.228915662650602 0.771084337349398"; depth 166 ; unknown ; non-synonymous GL195194.1 samtools variation 53785 53785 . . . alleles " G C"; frequencies " 0.26 0.74"; depth 50 ; unknown ; N/A GL195202.1 samtools variation 45759 45759 . . . alleles " A C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL195202.1 samtools variation 45812 45812 . . . alleles " T C"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; known ; N/A GL195209.1 samtools variation 11279 11279 . . . alleles " A G"; frequencies " 0.362603305785124 0.637396694214876"; depth 968 ; known ; synonymous GL195209.1 samtools variation 12389 12389 . . . alleles " C T"; frequencies " 0.347167325428195 0.652832674571805"; depth 1518 ; known ; synonymous GL195210.1 samtools variation 20222 20222 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL195210.1 samtools variation 20376 20376 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL195210.1 samtools variation 22219 22219 . . . alleles " A G"; frequencies " 0.770833333333333 0.229166666666667"; depth 96 ; unknown ; synonymous GL195210.1 samtools variation 22225 22225 . . . alleles " G A"; frequencies " 0.757894736842105 0.242105263157895"; depth 95 ; unknown ; synonymous GL195210.1 samtools variation 41264 41264 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; synonymous GL195210.1 samtools variation 59474 59474 . . . alleles " A T"; frequencies " 0.697674418604651 0.302325581395349"; depth 301 ; known ; N/A GL195210.1 samtools variation 59848 59848 . . . alleles " T G"; frequencies " 0.744897959183674 0.255102040816327"; depth 98 ; unknown ; N/A GL195214.1 samtools variation 2074 2074 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL195214.1 samtools variation 2816 2816 . . . alleles " A G"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; unknown ; N/A GL195214.1 samtools variation 3438 3438 . . . alleles " C A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL195214.1 samtools variation 3468 3468 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL195218.1 samtools variation 9523 9523 . . . alleles " G C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL195218.1 samtools variation 36600 36600 . . . alleles " T C"; frequencies " 0.797979797979798 0.202020202020202"; depth 99 ; unknown ; N/A GL195218.1 samtools variation 41110 41110 . . . alleles " T C"; frequencies " 0.711538461538462 0.288461538461538"; depth 52 ; known ; N/A GL195218.1 samtools variation 41354 41354 . . . alleles " G A"; frequencies " 0.244897959183673 0.755102040816326"; depth 49 ; unknown ; N/A GL195218.1 samtools variation 42791 42791 . . . alleles " T C"; frequencies " 0.474747474747475 0.525252525252525"; depth 495 ; unknown ; synonymous GL195218.1 samtools variation 43430 43430 . . . alleles " C T"; frequencies " 0.309139784946237 0.690860215053763"; depth 372 ; known ; N/A GL195218.1 samtools variation 43624 43624 . . . alleles " C A"; frequencies " 0.370762711864407 0.629237288135593"; depth 472 ; unknown ; N/A GL195218.1 samtools variation 46226 46226 . . . alleles " C T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL195220.1 samtools variation 26327 26327 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL195220.1 samtools variation 33978 33978 . . . alleles " A C"; frequencies " 0.457142857142857 0.542857142857143"; depth 70 ; unknown ; N/A GL195220.1 samtools variation 34183 34183 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 70 ; unknown ; N/A GL195220.1 samtools variation 34310 34310 . . . alleles " G T"; frequencies " 0.306306306306306 0.693693693693694"; depth 111 ; unknown ; N/A GL195220.1 samtools variation 34348 34348 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 96 ; unknown ; N/A GL195220.1 samtools variation 34497 34497 . . . alleles " G A"; frequencies " 0.468802698145025 0.531197301854975"; depth 593 ; unknown ; N/A GL195220.1 samtools variation 34554 34554 . . . alleles " C T"; frequencies " 0.754617414248021 0.245382585751979"; depth 758 ; unknown ; N/A GL195220.1 samtools variation 34874 34874 . . . alleles " C T"; frequencies " 0.496124031007752 0.503875968992248"; depth 129 ; unknown ; N/A GL195220.1 samtools variation 35082 35082 . . . alleles " C G"; frequencies " 0.516949152542373 0.483050847457627"; depth 118 ; unknown ; N/A GL195220.1 samtools variation 35191 35191 . . . alleles " C A"; frequencies " 0.446666666666667 0.553333333333333"; depth 150 ; unknown ; N/A GL195220.1 samtools variation 35376 35376 . . . alleles " G A"; frequencies " 0.515527950310559 0.484472049689441"; depth 322 ; unknown ; N/A GL195220.1 samtools variation 35412 35412 . . . alleles " A G"; frequencies " 0.548275862068966 0.451724137931034"; depth 290 ; unknown ; N/A GL195220.1 samtools variation 35701 35701 . . . alleles " A G"; frequencies " 0.559055118110236 0.440944881889764"; depth 254 ; unknown ; N/A GL195220.1 samtools variation 35742 35742 . . . alleles " G A"; frequencies " 0.503649635036496 0.496350364963504"; depth 274 ; unknown ; N/A GL195220.1 samtools variation 35902 35902 . . . alleles " T C"; frequencies " 0.480225988700565 0.519774011299435"; depth 177 ; unknown ; N/A GL195220.1 samtools variation 36070 36070 . . . alleles " C A"; frequencies " 0.466216216216216 0.533783783783784"; depth 148 ; unknown ; N/A GL195220.1 samtools variation 37356 37356 . . . alleles " G A"; frequencies " 0.687772925764192 0.312227074235808"; depth 458 ; unknown ; N/A GL195220.1 samtools variation 38077 38077 . . . alleles " G A"; frequencies " 0.53156146179402 0.46843853820598"; depth 301 ; unknown ; N/A GL195220.1 samtools variation 39225 39225 . . . alleles " T G"; frequencies " 0.484575835475578 0.515424164524422"; depth 778 ; unknown ; N/A GL195220.1 samtools variation 45356 45356 . . . alleles " C T"; frequencies " 0.798076923076923 0.201923076923077"; depth 104 ; unknown ; N/A GL195220.1 samtools variation 46072 46072 . . . alleles " G C"; frequencies " 0.390350877192982 0.609649122807018"; depth 228 ; unknown ; N/A GL195220.1 samtools variation 59204 59204 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL195220.1 samtools variation 62717 62717 . . . alleles " T C"; frequencies " 0.209090909090909 0.790909090909091"; depth 110 ; unknown ; N/A GL195225.1 samtools variation 37585 37585 . . . alleles " C T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL195228.1 samtools variation 7999 7999 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL195228.1 samtools variation 59838 59838 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL195228.1 samtools variation 59901 59901 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL195231.1 samtools variation 36131 36131 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; known ; N/A GL195231.1 samtools variation 40180 40180 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL195235.1 samtools variation 6956 6956 . . . alleles " G T"; frequencies " 0.475806451612903 0.5"; depth 124 ; known ; synonymous GL195235.1 samtools variation 22147 22147 . . . alleles " C G"; frequencies " 0.366666666666667 0.633333333333333"; depth 60 ; known ; non-synonymous GL195235.1 samtools variation 22227 22227 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; known ; N/A GL195235.1 samtools variation 22256 22256 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL195235.1 samtools variation 47187 47187 . . . alleles " T C"; frequencies " 0.3125 0.6875"; depth 16 ; known ; N/A GL195235.1 samtools variation 59549 59549 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL195235.1 samtools variation 59563 59563 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL195243.1 samtools variation 28539 28539 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL195243.1 samtools variation 28637 28637 . . . alleles " C G"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL195243.1 samtools variation 28665 28665 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL195244.1 samtools variation 25979 25979 . . . alleles " C T"; frequencies " 0.51063829787234 0.48936170212766"; depth 47 ; known ; non-synonymous GL195244.1 samtools variation 29450 29450 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 45 ; known ; N/A GL195258.1 samtools variation 9034 9034 . . . alleles " G A"; frequencies " 0.751479289940828 0.248520710059172"; depth 169 ; unknown ; N/A GL195264.1 samtools variation 668 668 . . . alleles " T C"; frequencies " 0.767123287671233 0.232876712328767"; depth 146 ; known ; N/A GL195268.1 samtools variation 27312 27312 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL195268.1 samtools variation 27795 27795 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL195293.1 samtools variation 11301 11301 . . . alleles " C T"; frequencies " 0.431279620853081 0.568720379146919"; depth 211 ; known ; N/A GL195293.1 samtools variation 11699 11699 . . . alleles " C A"; frequencies " 0.370786516853933 0.629213483146067"; depth 445 ; known ; N/A GL195293.1 samtools variation 11827 11827 . . . alleles " C T"; frequencies " 0.752032520325203 0.247967479674797"; depth 246 ; known ; synonymous GL195293.1 samtools variation 11918 11918 . . . alleles " C G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL195293.1 samtools variation 15103 15103 . . . alleles " G A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL195293.1 samtools variation 15133 15133 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL195293.1 samtools variation 16185 16185 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; known ; N/A GL195293.1 samtools variation 16743 16743 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL195293.1 samtools variation 26516 26516 . . . alleles " T C"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; known ; N/A GL195293.1 samtools variation 26910 26910 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL195293.1 samtools variation 26954 26954 . . . alleles " A C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL195293.1 samtools variation 26977 26977 . . . alleles " A G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL195293.1 samtools variation 33889 33889 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL195293.1 samtools variation 41560 41560 . . . alleles " C A"; frequencies " 0.260869565217391 0.739130434782609"; depth 23 ; unknown ; N/A GL195293.1 samtools variation 41695 41695 . . . alleles " A G"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL195307.1 samtools variation 29203 29203 . . . alleles " G T"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL195318.1 samtools variation 25016 25016 . . . alleles " G A"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL195318.1 samtools variation 31131 31131 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL195318.1 samtools variation 51757 51757 . . . alleles " G A"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL195318.1 samtools variation 52310 52310 . . . alleles " G A"; frequencies " 0.776536312849162 0.223463687150838"; depth 179 ; unknown ; N/A GL195318.1 samtools variation 52320 52320 . . . alleles " A C"; frequencies " 0.464730290456432 0.535269709543568"; depth 241 ; unknown ; N/A GL195318.1 samtools variation 52381 52381 . . . alleles " A G"; frequencies " 0.74390243902439 0.25609756097561"; depth 492 ; unknown ; N/A GL195318.1 samtools variation 52463 52463 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 612 ; unknown ; N/A GL195320.1 samtools variation 6751 6751 . . . alleles " G A"; frequencies " 0.783625730994152 0.216374269005848"; depth 171 ; unknown ; N/A GL195320.1 samtools variation 16062 16062 . . . alleles " T A"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL195320.1 samtools variation 16088 16088 . . . alleles " T G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL195320.1 samtools variation 21311 21311 . . . alleles " G A"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; known ; N/A GL195320.1 samtools variation 21321 21321 . . . alleles " A G"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; known ; N/A GL195320.1 samtools variation 34047 34047 . . . alleles " A G"; frequencies " 0.550724637681159 0.434782608695652"; depth 69 ; known ; synonymous GL195320.1 samtools variation 54273 54273 . . . alleles " C G"; frequencies " 0.276595744680851 0.723404255319149"; depth 47 ; known ; synonymous GL195322.1 samtools variation 45828 45828 . . . alleles " T C"; frequencies " 0.45 0.55"; depth 60 ; unknown ; N/A GL195322.1 samtools variation 51047 51047 . . . alleles " A T"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL195324.1 samtools variation 4357 4357 . . . alleles " C T"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL195324.1 samtools variation 5245 5245 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL195324.1 samtools variation 5291 5291 . . . alleles " C A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; known ; N/A GL195326.1 samtools variation 2779 2779 . . . alleles " G A"; frequencies " 0.715789473684211 0.284210526315789"; depth 95 ; unknown ; N/A GL195326.1 samtools variation 3574 3574 . . . alleles " T C"; frequencies " 0.643835616438356 0.356164383561644"; depth 73 ; unknown ; synonymous GL195326.1 samtools variation 3603 3603 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 60 ; unknown ; non-synonymous GL195326.1 samtools variation 8245 8245 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 12 ; unknown ; synonymous GL195326.1 samtools variation 8320 8320 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; synonymous GL195333.1 samtools variation 8807 8807 . . . alleles " G A"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; known ; N/A GL195333.1 samtools variation 10240 10240 . . . alleles " C T"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; known ; non-synonymous GL195333.1 samtools variation 50087 50087 . . . alleles " A C"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL195333.1 samtools variation 50094 50094 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL195333.1 samtools variation 50186 50186 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; known ; N/A GL195333.1 samtools variation 50516 50516 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; known ; N/A GL195334.1 samtools variation 1965 1965 . . . alleles " A G"; frequencies " 0.240506329113924 0.759493670886076"; depth 79 ; known ; synonymous GL195334.1 samtools variation 2271 2271 . . . alleles " T C"; frequencies " 0.478723404255319 0.521276595744681"; depth 94 ; unknown ; synonymous GL195334.1 samtools variation 11943 11943 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL195334.1 samtools variation 45996 45996 . . . alleles " A G"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; synonymous GL195344.1 samtools variation 21813 21813 . . . alleles " A G"; frequencies " 0.515384615384615 0.484615384615385"; depth 130 ; known ; synonymous GL195344.1 samtools variation 41653 41653 . . . alleles " C T"; frequencies " 0.328193832599119 0.671806167400881"; depth 454 ; known ; N/A GL195346.1 samtools variation 14369 14369 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL195346.1 samtools variation 14375 14375 . . . alleles " C T"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL195346.1 samtools variation 15775 15775 . . . alleles " G T"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; known ; non-synonymous GL195346.1 samtools variation 15800 15800 . . . alleles " G A"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; unknown ; synonymous GL195347.1 samtools variation 4795 4795 . . . alleles " G A"; frequencies " 0.592105263157895 0.407894736842105"; depth 76 ; known ; N/A GL195347.1 samtools variation 4927 4927 . . . alleles " T G"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; known ; N/A GL195347.1 samtools variation 6013 6013 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL195347.1 samtools variation 6097 6097 . . . alleles " G T"; frequencies " 0.419354838709677 0.580645161290323"; depth 62 ; unknown ; N/A GL195347.1 samtools variation 6800 6800 . . . alleles " C A"; frequencies " 0.263888888888889 0.736111111111111"; depth 72 ; unknown ; N/A GL195347.1 samtools variation 7020 7020 . . . alleles " G A"; frequencies " 0.275 0.725"; depth 40 ; unknown ; N/A GL195347.1 samtools variation 7820 7820 . . . alleles " A G"; frequencies " 0.783132530120482 0.216867469879518"; depth 83 ; unknown ; N/A GL195347.1 samtools variation 8205 8205 . . . alleles " G T"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL195347.1 samtools variation 11858 11858 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL195347.1 samtools variation 12582 12582 . . . alleles " C G"; frequencies " 0.429268292682927 0.570731707317073"; depth 205 ; unknown ; synonymous GL195347.1 samtools variation 16225 16225 . . . alleles " A G"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; unknown ; N/A GL195347.1 samtools variation 17526 17526 . . . alleles " T C"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL195347.1 samtools variation 18142 18142 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL195347.1 samtools variation 25631 25631 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL195347.1 samtools variation 25819 25819 . . . alleles " C T"; frequencies " 0.560975609756098 0.439024390243902"; depth 41 ; unknown ; N/A GL195347.1 samtools variation 33205 33205 . . . alleles " T C"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL195347.1 samtools variation 34458 34458 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL195347.1 samtools variation 34506 34506 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL195347.1 samtools variation 37128 37128 . . . alleles " A G"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL195347.1 samtools variation 42810 42810 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL195347.1 samtools variation 42827 42827 . . . alleles " T G"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL195347.1 samtools variation 44780 44780 . . . alleles " T G"; frequencies " 0.8 0.2"; depth 55 ; unknown ; N/A GL195347.1 samtools variation 44868 44868 . . . alleles " A G"; frequencies " 0.654028436018957 0.345971563981043"; depth 211 ; unknown ; N/A GL195347.1 samtools variation 45970 45970 . . . alleles " T C"; frequencies " 0.602941176470588 0.397058823529412"; depth 68 ; unknown ; N/A GL195347.1 samtools variation 45975 45975 . . . alleles " C T"; frequencies " 0.710743801652893 0.289256198347107"; depth 121 ; unknown ; N/A GL195347.1 samtools variation 46122 46122 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 168 ; unknown ; N/A GL195347.1 samtools variation 46171 46171 . . . alleles " T G"; frequencies " 0.528301886792453 0.471698113207547"; depth 106 ; unknown ; N/A GL195347.1 samtools variation 46462 46462 . . . alleles " A T"; frequencies " 0.78343949044586 0.21656050955414"; depth 157 ; unknown ; N/A GL195348.1 samtools variation 22147 22147 . . . alleles " C G"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; known ; N/A GL195348.1 samtools variation 31658 31658 . . . alleles " C T"; frequencies " 0.553030303030303 0.446969696969697"; depth 396 ; known ; N/A GL195348.1 samtools variation 41648 41648 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL195352.1 samtools variation 12352 12352 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 55 ; unknown ; synonymous GL195352.1 samtools variation 15184 15184 . . . alleles " A C"; frequencies " 0.698630136986301 0.301369863013699"; depth 73 ; unknown ; non-synonymous GL195352.1 samtools variation 15430 15430 . . . alleles " T C"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL195352.1 samtools variation 15466 15466 . . . alleles " C T"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL195352.1 samtools variation 15788 15788 . . . alleles " C T"; frequencies " 0.672727272727273 0.327272727272727"; depth 55 ; known ; non-synonymous GL195352.1 samtools variation 15825 15825 . . . alleles " A G"; frequencies " 0.559322033898305 0.440677966101695"; depth 59 ; unknown ; synonymous GL195352.1 samtools variation 22036 22036 . . . alleles " T C"; frequencies " 0.723684210526316 0.276315789473684"; depth 76 ; unknown ; N/A GL195352.1 samtools variation 22093 22093 . . . alleles " C T"; frequencies " 0.741935483870968 0.258064516129032"; depth 93 ; unknown ; N/A GL195352.1 samtools variation 22302 22302 . . . alleles " A C"; frequencies " 0.526315789473684 0.473684210526316"; depth 76 ; unknown ; N/A GL195352.1 samtools variation 26910 26910 . . . alleles " T G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL195352.1 samtools variation 27103 27103 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL195352.1 samtools variation 33043 33043 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; non-synonymous GL195353.1 samtools variation 23534 23534 . . . alleles " G A"; frequencies " 0.61734693877551 0.377551020408163"; depth 196 ; unknown ; N/A GL195353.1 samtools variation 23546 23546 . . . alleles " C T"; frequencies " 0.594036697247706 0.405963302752294"; depth 436 ; known ; N/A GL195353.1 samtools variation 24985 24985 . . . alleles " C A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL195353.1 samtools variation 26784 26784 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL195353.1 samtools variation 27705 27705 . . . alleles " C T"; frequencies " 0.7125 0.2875"; depth 160 ; unknown ; N/A GL195353.1 samtools variation 27983 27983 . . . alleles " C T"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL195353.1 samtools variation 40371 40371 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; non-synonymous GL195353.1 samtools variation 47746 47746 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; known ; N/A GL195353.1 samtools variation 47856 47856 . . . alleles " C T"; frequencies " 0.766497461928934 0.233502538071066"; depth 197 ; unknown ; N/A GL195353.1 samtools variation 47875 47875 . . . alleles " C T"; frequencies " 0.512064343163539 0.487935656836461"; depth 373 ; unknown ; N/A GL195353.1 samtools variation 47936 47936 . . . alleles " C T"; frequencies " 0.720720720720721 0.279279279279279"; depth 444 ; unknown ; N/A GL195353.1 samtools variation 48036 48036 . . . alleles " G A"; frequencies " 0.505535055350554 0.494464944649447"; depth 271 ; unknown ; N/A GL195354.1 samtools variation 12652 12652 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL195354.1 samtools variation 12676 12676 . . . alleles " A G"; frequencies " 0.558823529411765 0.441176470588235"; depth 34 ; unknown ; N/A GL195354.1 samtools variation 12830 12830 . . . alleles " G A"; frequencies " 0.567567567567568 0.432432432432432"; depth 74 ; unknown ; N/A GL195354.1 samtools variation 13168 13168 . . . alleles " C T"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL195354.1 samtools variation 13273 13273 . . . alleles " C T"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL195354.1 samtools variation 13351 13351 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL195354.1 samtools variation 13608 13608 . . . alleles " T G"; frequencies " 0.787234042553192 0.212765957446809"; depth 47 ; unknown ; non-synonymous GL195354.1 samtools variation 13610 13610 . . . alleles " A C"; frequencies " 0.555555555555556 0.444444444444444"; depth 45 ; unknown ; non-synonymous GL195354.1 samtools variation 13640 13640 . . . alleles " G T"; frequencies " 0.560975609756098 0.24390243902439"; depth 41 ; unknown ; synonymous GL195354.1 samtools variation 13761 13761 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL195354.1 samtools variation 13846 13846 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL195354.1 samtools variation 13889 13889 . . . alleles " G A"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL195354.1 samtools variation 13906 13906 . . . alleles " G T"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL195354.1 samtools variation 13929 13929 . . . alleles " G A"; frequencies " 0.784615384615385 0.215384615384615"; depth 65 ; unknown ; N/A GL195354.1 samtools variation 13934 13934 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 66 ; unknown ; N/A GL195354.1 samtools variation 14023 14023 . . . alleles " A G"; frequencies " 0.283018867924528 0.716981132075472"; depth 53 ; unknown ; N/A GL195354.1 samtools variation 14051 14051 . . . alleles " G A"; frequencies " 0.596153846153846 0.403846153846154"; depth 52 ; unknown ; N/A GL195354.1 samtools variation 14106 14106 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL195354.1 samtools variation 14119 14119 . . . alleles " A C"; frequencies " 0.65625 0.25"; depth 32 ; unknown ; N/A GL195354.1 samtools variation 14560 14560 . . . alleles " T G"; frequencies " 0.555555555555556 0.444444444444444"; depth 81 ; unknown ; N/A GL195354.1 samtools variation 14693 14693 . . . alleles " C T"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL195354.1 samtools variation 14830 14830 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL195354.1 samtools variation 14918 14918 . . . alleles " C T"; frequencies " 0.711538461538462 0.288461538461538"; depth 104 ; unknown ; synonymous GL195354.1 samtools variation 15433 15433 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL195354.1 samtools variation 15881 15881 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 80 ; unknown ; non-synonymous GL195354.1 samtools variation 15895 15895 . . . alleles " T G"; frequencies " 0.757142857142857 0.242857142857143"; depth 70 ; unknown ; non-synonymous GL195354.1 samtools variation 19767 19767 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; synonymous GL195354.1 samtools variation 24871 24871 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 30 ; unknown ; N/A GL195354.1 samtools variation 24915 24915 . . . alleles " T C"; frequencies " 0.3 0.7"; depth 30 ; unknown ; N/A GL195354.1 samtools variation 35354 35354 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL195354.1 samtools variation 35666 35666 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL195354.1 samtools variation 36876 36876 . . . alleles " C T"; frequencies " 0.770833333333333 0.229166666666667"; depth 96 ; unknown ; N/A GL195354.1 samtools variation 38234 38234 . . . alleles " C T"; frequencies " 0.596153846153846 0.403846153846154"; depth 52 ; unknown ; non-synonymous GL195354.1 samtools variation 38251 38251 . . . alleles " A G"; frequencies " 0.432835820895522 0.567164179104478"; depth 67 ; unknown ; synonymous GL195354.1 samtools variation 39514 39514 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL195354.1 samtools variation 39564 39564 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL195354.1 samtools variation 43796 43796 . . . alleles " A T"; frequencies " 0.282051282051282 0.717948717948718"; depth 39 ; unknown ; N/A GL195354.1 samtools variation 44567 44567 . . . alleles " C A"; frequencies " 0.692307692307692 0.307692307692308"; depth 39 ; unknown ; N/A GL195354.1 samtools variation 44651 44651 . . . alleles " A T"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL195354.1 samtools variation 45099 45099 . . . alleles " C G"; frequencies " 0.625 0.375"; depth 24 ; unknown ; N/A GL195354.1 samtools variation 45172 45172 . . . alleles " C A"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL195354.1 samtools variation 45321 45321 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL195354.1 samtools variation 45497 45497 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL195354.1 samtools variation 45511 45511 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL195354.1 samtools variation 46535 46535 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL195354.1 samtools variation 46785 46785 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 33 ; unknown ; N/A GL195354.1 samtools variation 46916 46916 . . . alleles " A G"; frequencies " 0.694915254237288 0.305084745762712"; depth 59 ; unknown ; N/A GL195354.1 samtools variation 46998 46998 . . . alleles " G A"; frequencies " 0.617977528089888 0.382022471910112"; depth 89 ; unknown ; N/A GL195354.1 samtools variation 47023 47023 . . . alleles " T C"; frequencies " 0.423076923076923 0.576923076923077"; depth 78 ; unknown ; N/A GL195354.1 samtools variation 47138 47138 . . . alleles " T C"; frequencies " 0.365079365079365 0.634920634920635"; depth 63 ; unknown ; N/A GL195354.1 samtools variation 48020 48020 . . . alleles " T C"; frequencies " 0.78125 0.21875"; depth 64 ; unknown ; N/A GL195354.1 samtools variation 48050 48050 . . . alleles " T G"; frequencies " 0.6125 0.3875"; depth 80 ; unknown ; N/A GL195354.1 samtools variation 48090 48090 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 57 ; unknown ; N/A GL195354.1 samtools variation 48116 48116 . . . alleles " A G"; frequencies " 0.490196078431373 0.509803921568627"; depth 51 ; unknown ; N/A GL195354.1 samtools variation 48504 48504 . . . alleles " A G"; frequencies " 0.342857142857143 0.657142857142857"; depth 35 ; unknown ; N/A GL195354.1 samtools variation 48691 48691 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL195372.1 samtools variation 154 154 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL195372.1 samtools variation 195 195 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL195372.1 samtools variation 229 229 . . . alleles " T C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL195372.1 samtools variation 3253 3253 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL195372.1 samtools variation 6070 6070 . . . alleles " T G"; frequencies " 0.677918424753868 0.322081575246132"; depth 2133 ; unknown ; N/A GL195372.1 samtools variation 7340 7340 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 55 ; unknown ; N/A GL195372.1 samtools variation 8129 8129 . . . alleles " G A"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL195372.1 samtools variation 9391 9391 . . . alleles " T G"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL195372.1 samtools variation 9810 9810 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL195372.1 samtools variation 12141 12141 . . . alleles " C T"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL195382.1 samtools variation 1369 1369 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL195382.1 samtools variation 1406 1406 . . . alleles " C T"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; known ; N/A GL195382.1 samtools variation 23998 23998 . . . alleles " A G"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL195382.1 samtools variation 24573 24573 . . . alleles " G A"; frequencies " 0.425 0.575"; depth 40 ; unknown ; N/A GL195382.1 samtools variation 42389 42389 . . . alleles " G A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL195382.1 samtools variation 46077 46077 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; known ; N/A GL195389.1 samtools variation 20854 20854 . . . alleles " A T"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; known ; synonymous GL195394.1 samtools variation 11272 11272 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL195394.1 samtools variation 15191 15191 . . . alleles " G A"; frequencies " 0.709163346613546 0.290836653386454"; depth 251 ; unknown ; synonymous GL195394.1 samtools variation 15311 15311 . . . alleles " T C"; frequencies " 0.773333333333333 0.226666666666667"; depth 75 ; unknown ; synonymous GL195406.1 samtools variation 45816 45816 . . . alleles " T G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL195412.1 samtools variation 24563 24563 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 42 ; known ; N/A GL195416.1 samtools variation 37776 37776 . . . alleles " G C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL195434.1 samtools variation 2738 2738 . . . alleles " G T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL195434.1 samtools variation 2797 2797 . . . alleles " G T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL195434.1 samtools variation 7158 7158 . . . alleles " T G"; frequencies " 0.628571428571429 0.371428571428571"; depth 105 ; unknown ; N/A GL195434.1 samtools variation 7247 7247 . . . alleles " G A"; frequencies " 0.791666666666667 0.208333333333333"; depth 48 ; unknown ; N/A GL195434.1 samtools variation 7316 7316 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL195434.1 samtools variation 7356 7356 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL195434.1 samtools variation 7475 7475 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL195434.1 samtools variation 13981 13981 . . . alleles " C T"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL195434.1 samtools variation 20744 20744 . . . alleles " T C"; frequencies " 0.73015873015873 0.26984126984127"; depth 126 ; unknown ; N/A GL195434.1 samtools variation 20825 20825 . . . alleles " T C"; frequencies " 0.640449438202247 0.359550561797753"; depth 445 ; unknown ; N/A GL195434.1 samtools variation 20904 20904 . . . alleles " G A"; frequencies " 0.781632653061225 0.218367346938776"; depth 490 ; unknown ; N/A GL195434.1 samtools variation 20989 20989 . . . alleles " G A"; frequencies " 0.783783783783784 0.216216216216216"; depth 333 ; unknown ; N/A GL195434.1 samtools variation 21682 21682 . . . alleles " G A"; frequencies " 0.797872340425532 0.202127659574468"; depth 94 ; unknown ; N/A GL195434.1 samtools variation 22540 22540 . . . alleles " A G"; frequencies " 0.684210526315789 0.315789473684211"; depth 95 ; unknown ; N/A GL195434.1 samtools variation 22632 22632 . . . alleles " G A"; frequencies " 0.671875 0.328125"; depth 64 ; unknown ; N/A GL195434.1 samtools variation 24258 24258 . . . alleles " G C"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; unknown ; N/A GL195434.1 samtools variation 24422 24422 . . . alleles " T C"; frequencies " 0.578947368421053 0.421052631578947"; depth 38 ; unknown ; N/A GL195437.1 samtools variation 30359 30359 . . . alleles " G A"; frequencies " 0.579545454545455 0.420454545454545"; depth 88 ; unknown ; non-synonymous GL195438.1 samtools variation 1748 1748 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL195438.1 samtools variation 1763 1763 . . . alleles " C G"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL195438.1 samtools variation 1973 1973 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL195438.1 samtools variation 1974 1974 . . . alleles " A C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL195438.1 samtools variation 4878 4878 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL195438.1 samtools variation 5989 5989 . . . alleles " G A"; frequencies " 0.657894736842105 0.342105263157895"; depth 38 ; unknown ; N/A GL195438.1 samtools variation 7389 7389 . . . alleles " C T"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; N/A GL195438.1 samtools variation 15813 15813 . . . alleles " G A"; frequencies " 0.565217391304348 0.434782608695652"; depth 46 ; unknown ; N/A GL195438.1 samtools variation 22653 22653 . . . alleles " C A"; frequencies " 0.520661157024793 0.471074380165289"; depth 121 ; unknown ; N/A GL195438.1 samtools variation 22783 22783 . . . alleles " G A"; frequencies " 0.78030303030303 0.21969696969697"; depth 132 ; unknown ; N/A GL195438.1 samtools variation 23799 23799 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL195438.1 samtools variation 24646 24646 . . . alleles " A G"; frequencies " 0.290322580645161 0.709677419354839"; depth 93 ; known ; N/A GL195438.1 samtools variation 38670 38670 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL195438.1 samtools variation 40014 40014 . . . alleles " C T"; frequencies " 0.796610169491525 0.203389830508475"; depth 236 ; unknown ; N/A GL195438.1 samtools variation 43120 43120 . . . alleles " C T"; frequencies " 0.648148148148148 0.351851851851852"; depth 108 ; unknown ; N/A GL195438.1 samtools variation 43486 43486 . . . alleles " G A"; frequencies " 0.742105263157895 0.252631578947368"; depth 190 ; unknown ; N/A GL195438.1 samtools variation 43506 43506 . . . alleles " T C"; frequencies " 0.298507462686567 0.701492537313433"; depth 201 ; known ; N/A GL195444.1 samtools variation 792 792 . . . alleles " T C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL195444.1 samtools variation 2807 2807 . . . alleles " G C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL195444.1 samtools variation 4386 4386 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL195444.1 samtools variation 4468 4468 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL195444.1 samtools variation 4733 4733 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL195444.1 samtools variation 4752 4752 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL195444.1 samtools variation 4759 4759 . . . alleles " C A"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL195444.1 samtools variation 10209 10209 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL195444.1 samtools variation 10220 10220 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL195444.1 samtools variation 12318 12318 . . . alleles " C A"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL195444.1 samtools variation 12320 12320 . . . alleles " T A"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL195444.1 samtools variation 15749 15749 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL195444.1 samtools variation 16920 16920 . . . alleles " T A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL195444.1 samtools variation 17000 17000 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL195444.1 samtools variation 17673 17673 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL195444.1 samtools variation 17681 17681 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL195444.1 samtools variation 17746 17746 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL195444.1 samtools variation 17951 17951 . . . alleles " T C"; frequencies " 0.6 0.333333333333333"; depth 15 ; unknown ; N/A GL195444.1 samtools variation 18139 18139 . . . alleles " T G"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL195444.1 samtools variation 18325 18325 . . . alleles " C A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL195444.1 samtools variation 18349 18349 . . . alleles " A G"; frequencies " 0.466666666666667 0.4"; depth 15 ; unknown ; N/A GL195444.1 samtools variation 18391 18391 . . . alleles " C G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL195444.1 samtools variation 18722 18722 . . . alleles " A G"; frequencies " 0.241379310344828 0.758620689655172"; depth 29 ; unknown ; N/A GL195444.1 samtools variation 18855 18855 . . . alleles " G A"; frequencies " 0.650205761316872 0.349794238683128"; depth 243 ; unknown ; N/A GL195444.1 samtools variation 18868 18868 . . . alleles " C A"; frequencies " 0.544802867383513 0.455197132616487"; depth 279 ; unknown ; N/A GL195444.1 samtools variation 19041 19041 . . . alleles " T C"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL195444.1 samtools variation 19110 19110 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 42 ; unknown ; N/A GL195444.1 samtools variation 19233 19233 . . . alleles " C T"; frequencies " 0.770833333333333 0.229166666666667"; depth 48 ; unknown ; N/A GL195444.1 samtools variation 19999 19999 . . . alleles " C T"; frequencies " 0.648648648648649 0.351351351351351"; depth 111 ; unknown ; N/A GL195444.1 samtools variation 20005 20005 . . . alleles " C T"; frequencies " 0.700934579439252 0.299065420560748"; depth 107 ; unknown ; N/A GL195444.1 samtools variation 20006 20006 . . . alleles " G A"; frequencies " 0.79047619047619 0.20952380952381"; depth 105 ; unknown ; N/A GL195444.1 samtools variation 20143 20143 . . . alleles " T C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL195444.1 samtools variation 20567 20567 . . . alleles " G A"; frequencies " 0.723076923076923 0.276923076923077"; depth 65 ; unknown ; N/A GL195444.1 samtools variation 20823 20823 . . . alleles " T A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL195444.1 samtools variation 20946 20946 . . . alleles " C T"; frequencies " 0.414634146341463 0.573170731707317"; depth 82 ; unknown ; N/A GL195444.1 samtools variation 20980 20980 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 80 ; unknown ; N/A GL195444.1 samtools variation 21040 21040 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL195444.1 samtools variation 21266 21266 . . . alleles " T A"; frequencies " 0.476190476190476 0.523809523809524"; depth 63 ; unknown ; N/A GL195444.1 samtools variation 21430 21430 . . . alleles " T C"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL195444.1 samtools variation 21680 21680 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; N/A GL195444.1 samtools variation 21714 21714 . . . alleles " C T"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL195444.1 samtools variation 22201 22201 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 30 ; unknown ; N/A GL195444.1 samtools variation 22865 22865 . . . alleles " C G"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL195444.1 samtools variation 22949 22949 . . . alleles " G A"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL195444.1 samtools variation 23348 23348 . . . alleles " G A"; frequencies " 0.592592592592593 0.407407407407407"; depth 27 ; unknown ; N/A GL195444.1 samtools variation 23391 23391 . . . alleles " A G"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL195444.1 samtools variation 23617 23617 . . . alleles " A G"; frequencies " 0.388888888888889 0.603174603174603"; depth 126 ; unknown ; N/A GL195444.1 samtools variation 23684 23684 . . . alleles " C T"; frequencies " 0.793650793650794 0.206349206349206"; depth 63 ; unknown ; N/A GL195444.1 samtools variation 24208 24208 . . . alleles " A C"; frequencies " 0.763157894736842 0.236842105263158"; depth 114 ; unknown ; N/A GL195444.1 samtools variation 24274 24274 . . . alleles " G A"; frequencies " 0.725490196078431 0.274509803921569"; depth 102 ; unknown ; N/A GL195444.1 samtools variation 24311 24311 . . . alleles " T A"; frequencies " 0.760330578512397 0.239669421487603"; depth 121 ; unknown ; N/A GL195444.1 samtools variation 24364 24364 . . . alleles " G C"; frequencies " 0.79136690647482 0.20863309352518"; depth 139 ; unknown ; N/A GL195444.1 samtools variation 24467 24467 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL195444.1 samtools variation 24530 24530 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL195444.1 samtools variation 24573 24573 . . . alleles " C G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL195444.1 samtools variation 24642 24642 . . . alleles " C T"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; unknown ; N/A GL195444.1 samtools variation 24686 24686 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 38 ; unknown ; N/A GL195444.1 samtools variation 24722 24722 . . . alleles " G T"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL195444.1 samtools variation 24814 24814 . . . alleles " T G"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL195444.1 samtools variation 24817 24817 . . . alleles " T C"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL195444.1 samtools variation 24896 24896 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL195444.1 samtools variation 24912 24912 . . . alleles " G T"; frequencies " 0.484848484848485 0.393939393939394"; depth 33 ; unknown ; N/A GL195444.1 samtools variation 24987 24987 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 68 ; unknown ; N/A GL195444.1 samtools variation 25078 25078 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL195444.1 samtools variation 25224 25224 . . . alleles " T G"; frequencies " 0.567567567567568 0.432432432432432"; depth 37 ; unknown ; N/A GL195444.1 samtools variation 25245 25245 . . . alleles " G A"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL195444.1 samtools variation 25264 25264 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL195444.1 samtools variation 25319 25319 . . . alleles " G A"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL195444.1 samtools variation 25421 25421 . . . alleles " G A"; frequencies " 0.535714285714286 0.464285714285714"; depth 56 ; unknown ; N/A GL195444.1 samtools variation 25540 25540 . . . alleles " C A"; frequencies " 0.797101449275362 0.202898550724638"; depth 138 ; unknown ; N/A GL195444.1 samtools variation 25548 25548 . . . alleles " C T"; frequencies " 0.595890410958904 0.404109589041096"; depth 146 ; unknown ; N/A GL195444.1 samtools variation 25804 25804 . . . alleles " T C"; frequencies " 0.767045454545455 0.232954545454545"; depth 176 ; unknown ; N/A GL195444.1 samtools variation 25806 25806 . . . alleles " T A"; frequencies " 0.773480662983425 0.226519337016575"; depth 181 ; unknown ; N/A GL195444.1 samtools variation 25922 25922 . . . alleles " G A"; frequencies " 0.76605504587156 0.23394495412844"; depth 218 ; unknown ; N/A GL195444.1 samtools variation 26046 26046 . . . alleles " T C"; frequencies " 0.738317757009346 0.261682242990654"; depth 107 ; unknown ; N/A GL195444.1 samtools variation 26155 26155 . . . alleles " G A"; frequencies " 0.700787401574803 0.299212598425197"; depth 127 ; unknown ; N/A GL195444.1 samtools variation 26645 26645 . . . alleles " A T"; frequencies " 0.358974358974359 0.641025641025641"; depth 117 ; unknown ; N/A GL195444.1 samtools variation 26793 26793 . . . alleles " T G"; frequencies " 0.556962025316456 0.443037974683544"; depth 79 ; unknown ; N/A GL195444.1 samtools variation 26812 26812 . . . alleles " C T"; frequencies " 0.738095238095238 0.261904761904762"; depth 84 ; unknown ; N/A GL195444.1 samtools variation 26958 26958 . . . alleles " A G"; frequencies " 0.71304347826087 0.28695652173913"; depth 115 ; unknown ; N/A GL195444.1 samtools variation 26960 26960 . . . alleles " G A"; frequencies " 0.71304347826087 0.28695652173913"; depth 115 ; unknown ; N/A GL195444.1 samtools variation 26973 26973 . . . alleles " T C"; frequencies " 0.606837606837607 0.393162393162393"; depth 117 ; unknown ; N/A GL195444.1 samtools variation 27043 27043 . . . alleles " G A"; frequencies " 0.303030303030303 0.696969696969697"; depth 66 ; unknown ; N/A GL195444.1 samtools variation 27048 27048 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 75 ; unknown ; N/A GL195444.1 samtools variation 27306 27306 . . . alleles " C T"; frequencies " 0.739130434782609 0.260869565217391"; depth 69 ; unknown ; N/A GL195444.1 samtools variation 27322 27322 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL195444.1 samtools variation 27553 27553 . . . alleles " G A"; frequencies " 0.707070707070707 0.292929292929293"; depth 198 ; unknown ; N/A GL195444.1 samtools variation 27577 27577 . . . alleles " C T"; frequencies " 0.69578313253012 0.30421686746988"; depth 332 ; unknown ; N/A GL195444.1 samtools variation 27639 27639 . . . alleles " T C"; frequencies " 0.323232323232323 0.676767676767677"; depth 198 ; unknown ; N/A GL195444.1 samtools variation 27705 27705 . . . alleles " G A"; frequencies " 0.797368421052632 0.202631578947368"; depth 380 ; unknown ; N/A GL195444.1 samtools variation 27774 27774 . . . alleles " C T"; frequencies " 0.671506352087114 0.328493647912886"; depth 551 ; unknown ; N/A GL195444.1 samtools variation 27844 27844 . . . alleles " T C"; frequencies " 0.675282714054927 0.324717285945073"; depth 619 ; unknown ; N/A GL195444.1 samtools variation 27939 27939 . . . alleles " G A"; frequencies " 0.731481481481482 0.268518518518519"; depth 432 ; unknown ; N/A GL195444.1 samtools variation 27993 27993 . . . alleles " C A"; frequencies " 0.327659574468085 0.672340425531915"; depth 235 ; unknown ; N/A GL195444.1 samtools variation 28006 28006 . . . alleles " C T"; frequencies " 0.286885245901639 0.713114754098361"; depth 244 ; unknown ; N/A GL195444.1 samtools variation 28130 28130 . . . alleles " C T"; frequencies " 0.711018711018711 0.288981288981289"; depth 481 ; unknown ; N/A GL195444.1 samtools variation 28219 28219 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 600 ; unknown ; N/A GL195444.1 samtools variation 28285 28285 . . . alleles " T C"; frequencies " 0.743190661478599 0.256809338521401"; depth 771 ; unknown ; N/A GL195444.1 samtools variation 28318 28318 . . . alleles " C G"; frequencies " 0.676811594202899 0.323188405797101"; depth 690 ; unknown ; N/A GL195444.1 samtools variation 28418 28418 . . . alleles " C T"; frequencies " 0.51413881748072 0.48586118251928"; depth 389 ; unknown ; N/A GL195444.1 samtools variation 28554 28554 . . . alleles " G A"; frequencies " 0.430769230769231 0.569230769230769"; depth 65 ; unknown ; N/A GL195444.1 samtools variation 28572 28572 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 88 ; unknown ; N/A GL195444.1 samtools variation 28642 28642 . . . alleles " C G"; frequencies " 0.547826086956522 0.452173913043478"; depth 230 ; unknown ; N/A GL195444.1 samtools variation 28701 28701 . . . alleles " G A"; frequencies " 0.379310344827586 0.620689655172414"; depth 232 ; unknown ; N/A GL195444.1 samtools variation 29030 29030 . . . alleles " T C"; frequencies " 0.648148148148148 0.351851851851852"; depth 594 ; unknown ; N/A GL195444.1 samtools variation 29080 29080 . . . alleles " C T"; frequencies " 0.61203007518797 0.38796992481203"; depth 665 ; unknown ; N/A GL195444.1 samtools variation 29368 29368 . . . alleles " T G"; frequencies " 0.504201680672269 0.495798319327731"; depth 119 ; unknown ; N/A GL195444.1 samtools variation 29442 29442 . . . alleles " C T"; frequencies " 0.67741935483871 0.32258064516129"; depth 155 ; unknown ; N/A GL195444.1 samtools variation 30654 30654 . . . alleles " G A"; frequencies " 0.743142144638404 0.256857855361596"; depth 401 ; unknown ; N/A GL195444.1 samtools variation 30708 30708 . . . alleles " A G"; frequencies " 0.776041666666667 0.223958333333333"; depth 576 ; unknown ; N/A GL195444.1 samtools variation 30754 30754 . . . alleles " A G"; frequencies " 0.794621026894866 0.205378973105134"; depth 409 ; unknown ; N/A GL195444.1 samtools variation 30770 30770 . . . alleles " G T"; frequencies " 0.759223300970874 0.240776699029126"; depth 515 ; unknown ; N/A GL195444.1 samtools variation 40334 40334 . . . alleles " T G"; frequencies " 0.798206278026906 0.201793721973094"; depth 223 ; unknown ; N/A GL195444.1 samtools variation 40359 40359 . . . alleles " G A"; frequencies " 0.35978835978836 0.64021164021164"; depth 189 ; unknown ; N/A GL195444.1 samtools variation 41473 41473 . . . alleles " A G"; frequencies " 0.493827160493827 0.506172839506173"; depth 81 ; unknown ; N/A GL195456.1 samtools variation 4949 4949 . . . alleles " A G"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL195476.1 samtools variation 29514 29514 . . . alleles " A G"; frequencies " 0.773584905660377 0.226415094339623"; depth 106 ; unknown ; N/A GL195476.1 samtools variation 29625 29625 . . . alleles " T G"; frequencies " 0.651041666666667 0.34375"; depth 192 ; unknown ; N/A GL195476.1 samtools variation 30468 30468 . . . alleles " G C"; frequencies " 0.787878787878788 0.212121212121212"; depth 132 ; unknown ; N/A GL195476.1 samtools variation 32292 32292 . . . alleles " G A"; frequencies " 0.767206477732793 0.232793522267206"; depth 494 ; unknown ; synonymous GL195476.1 samtools variation 38939 38939 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL195478.1 samtools variation 191 191 . . . alleles " G T"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; known ; N/A GL195478.1 samtools variation 243 243 . . . alleles " A G"; frequencies " 0.676923076923077 0.323076923076923"; depth 65 ; known ; N/A GL195478.1 samtools variation 267 267 . . . alleles " G A"; frequencies " 0.634615384615385 0.365384615384615"; depth 52 ; known ; N/A GL195478.1 samtools variation 343 343 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 72 ; known ; N/A GL195478.1 samtools variation 586 586 . . . alleles " C T"; frequencies " 0.659574468085106 0.340425531914894"; depth 47 ; known ; N/A GL195478.1 samtools variation 6001 6001 . . . alleles " C G"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; known ; N/A GL195478.1 samtools variation 6075 6075 . . . alleles " G C"; frequencies " 0.324324324324324 0.675675675675676"; depth 37 ; known ; N/A GL195478.1 samtools variation 20859 20859 . . . alleles " A T"; frequencies " 0.722513089005236 0.277486910994764"; depth 191 ; unknown ; N/A GL195478.1 samtools variation 21348 21348 . . . alleles " A G"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL195478.1 samtools variation 22791 22791 . . . alleles " G A"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL195480.1 samtools variation 9457 9457 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL195481.1 samtools variation 30459 30459 . . . alleles " C T"; frequencies " 0.566666666666667 0.433333333333333"; depth 30 ; known ; synonymous GL195483.1 samtools variation 15279 15279 . . . alleles " C A"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL195483.1 samtools variation 18417 18417 . . . alleles " G T"; frequencies " 0.2 0.8"; depth 35 ; known ; non-synonymous GL195493.1 samtools variation 24336 24336 . . . alleles " A C"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL195495.1 samtools variation 19789 19789 . . . alleles " A T"; frequencies " 0.320987654320988 0.679012345679012"; depth 81 ; known ; N/A GL195501.1 samtools variation 338 338 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL195501.1 samtools variation 7141 7141 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 36 ; known ; N/A GL195501.1 samtools variation 8515 8515 . . . alleles " G A"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL195503.1 samtools variation 22739 22739 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL195503.1 samtools variation 22833 22833 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL195503.1 samtools variation 32114 32114 . . . alleles " A G"; frequencies " 0.522727272727273 0.477272727272727"; depth 44 ; known ; N/A GL195508.1 samtools variation 22439 22439 . . . alleles " T C"; frequencies " 0.555102040816327 0.444897959183673"; depth 245 ; unknown ; synonymous GL195514.1 samtools variation 660 660 . . . alleles " C A"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL195518.1 samtools variation 28583 28583 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL195519.1 samtools variation 3141 3141 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL195519.1 samtools variation 3210 3210 . . . alleles " A G"; frequencies " 0.511111111111111 0.488888888888889"; depth 45 ; unknown ; N/A GL195519.1 samtools variation 3335 3335 . . . alleles " T C"; frequencies " 0.745762711864407 0.254237288135593"; depth 59 ; unknown ; N/A GL195519.1 samtools variation 3374 3374 . . . alleles " G T"; frequencies " 0.71830985915493 0.28169014084507"; depth 71 ; unknown ; N/A GL195519.1 samtools variation 3406 3406 . . . alleles " C G"; frequencies " 0.697674418604651 0.302325581395349"; depth 86 ; unknown ; N/A GL195520.1 samtools variation 25906 25906 . . . alleles " T C"; frequencies " 0.36 0.64"; depth 75 ; unknown ; synonymous GL195521.1 samtools variation 25359 25359 . . . alleles " G A"; frequencies " 0.642458100558659 0.357541899441341"; depth 179 ; unknown ; N/A GL195525.1 samtools variation 22905 22905 . . . alleles " C T"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL195525.1 samtools variation 30650 30650 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL195535.1 samtools variation 15196 15196 . . . alleles " G A"; frequencies " 0.213114754098361 0.786885245901639"; depth 244 ; unknown ; non-synonymous GL195535.1 samtools variation 16759 16759 . . . alleles " C A"; frequencies " 0.766233766233766 0.233766233766234"; depth 77 ; unknown ; N/A GL195535.1 samtools variation 23205 23205 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL195535.1 samtools variation 31447 31447 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 57 ; unknown ; N/A GL195535.1 samtools variation 33165 33165 . . . alleles " T C"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL195535.1 samtools variation 33515 33515 . . . alleles " C T"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; unknown ; N/A GL195535.1 samtools variation 34130 34130 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL195535.1 samtools variation 34193 34193 . . . alleles " G A"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL195535.1 samtools variation 35054 35054 . . . alleles " A G"; frequencies " 0.26 0.74"; depth 50 ; unknown ; N/A GL195535.1 samtools variation 35501 35501 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL195535.1 samtools variation 35731 35731 . . . alleles " T G"; frequencies " 0.625 0.375"; depth 48 ; unknown ; N/A GL195535.1 samtools variation 36147 36147 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 39 ; unknown ; N/A GL195538.1 samtools variation 3991 3991 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; unknown ; N/A GL195539.1 samtools variation 22681 22681 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL195545.1 samtools variation 3250 3250 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 57 ; known ; N/A GL195545.1 samtools variation 3283 3283 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 46 ; unknown ; N/A GL195545.1 samtools variation 3589 3589 . . . alleles " C T"; frequencies " 0.55609756097561 0.44390243902439"; depth 205 ; unknown ; synonymous GL195545.1 samtools variation 3705 3705 . . . alleles " C T"; frequencies " 0.573333333333333 0.426666666666667"; depth 150 ; unknown ; non-synonymous GL195545.1 samtools variation 3774 3774 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 90 ; unknown ; non-synonymous GL195545.1 samtools variation 4276 4276 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 91 ; unknown ; synonymous GL195545.1 samtools variation 5225 5225 . . . alleles " G T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL195545.1 samtools variation 11850 11850 . . . alleles " T G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL195545.1 samtools variation 11894 11894 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL195545.1 samtools variation 12802 12802 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL195545.1 samtools variation 13438 13438 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL195545.1 samtools variation 13467 13467 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL195545.1 samtools variation 13835 13835 . . . alleles " G A"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; N/A GL195545.1 samtools variation 16522 16522 . . . alleles " A G"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL195545.1 samtools variation 16544 16544 . . . alleles " A G"; frequencies " 0.473684210526316 0.526315789473684"; depth 19 ; unknown ; N/A GL195545.1 samtools variation 17539 17539 . . . alleles " A C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL195545.1 samtools variation 17621 17621 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL195545.1 samtools variation 25700 25700 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL195545.1 samtools variation 25742 25742 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL195545.1 samtools variation 28624 28624 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL195545.1 samtools variation 28685 28685 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL195545.1 samtools variation 29691 29691 . . . alleles " C T"; frequencies " 0.793103448275862 0.206896551724138"; depth 203 ; unknown ; N/A GL195545.1 samtools variation 29731 29731 . . . alleles " T C"; frequencies " 0.725146198830409 0.274853801169591"; depth 171 ; unknown ; N/A GL195545.1 samtools variation 29791 29791 . . . alleles " A C"; frequencies " 0.76 0.24"; depth 125 ; unknown ; N/A GL195545.1 samtools variation 30159 30159 . . . alleles " G A"; frequencies " 0.753086419753086 0.246913580246914"; depth 81 ; unknown ; N/A GL195545.1 samtools variation 30270 30270 . . . alleles " A C"; frequencies " 0.428571428571429 0.571428571428571"; depth 14 ; unknown ; N/A GL195545.1 samtools variation 30348 30348 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL195545.1 samtools variation 30351 30351 . . . alleles " G C"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL195545.1 samtools variation 30419 30419 . . . alleles " T A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL195545.1 samtools variation 33730 33730 . . . alleles " G A"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL195545.1 samtools variation 35257 35257 . . . alleles " C G"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL195545.1 samtools variation 35276 35276 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL195549.1 samtools variation 13939 13939 . . . alleles " A G"; frequencies " 0.294117647058824 0.705882352941177"; depth 51 ; unknown ; N/A GL195551.1 samtools variation 7165 7165 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL195551.1 samtools variation 7390 7390 . . . alleles " C A"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL195551.1 samtools variation 7842 7842 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL195551.1 samtools variation 8035 8035 . . . alleles " A C"; frequencies " 0.725 0.275"; depth 40 ; unknown ; N/A GL195551.1 samtools variation 8036 8036 . . . alleles " G A"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; N/A GL195551.1 samtools variation 8353 8353 . . . alleles " A C"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; N/A GL195551.1 samtools variation 8389 8389 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL195551.1 samtools variation 8716 8716 . . . alleles " G A"; frequencies " 0.655737704918033 0.327868852459016"; depth 61 ; unknown ; N/A GL195551.1 samtools variation 8733 8733 . . . alleles " C T"; frequencies " 0.641975308641975 0.358024691358025"; depth 81 ; unknown ; N/A GL195551.1 samtools variation 8797 8797 . . . alleles " C T"; frequencies " 0.591666666666667 0.408333333333333"; depth 120 ; unknown ; N/A GL195551.1 samtools variation 8918 8918 . . . alleles " G C"; frequencies " 0.613636363636364 0.386363636363636"; depth 132 ; unknown ; N/A GL195551.1 samtools variation 9227 9227 . . . alleles " C T"; frequencies " 0.767676767676768 0.232323232323232"; depth 99 ; unknown ; N/A GL195551.1 samtools variation 9517 9517 . . . alleles " G A"; frequencies " 0.765567765567766 0.234432234432234"; depth 273 ; unknown ; N/A GL195551.1 samtools variation 9759 9759 . . . alleles " C T"; frequencies " 0.677083333333333 0.322916666666667"; depth 192 ; unknown ; N/A GL195551.1 samtools variation 13005 13005 . . . alleles " G A"; frequencies " 0.594059405940594 0.405940594059406"; depth 101 ; unknown ; N/A GL195551.1 samtools variation 13884 13884 . . . alleles " C T"; frequencies " 0.756175298804781 0.243824701195219"; depth 1255 ; unknown ; synonymous GL195551.1 samtools variation 14162 14162 . . . alleles " G A"; frequencies " 0.787878787878788 0.212121212121212"; depth 33 ; unknown ; N/A GL195551.1 samtools variation 14618 14618 . . . alleles " C T"; frequencies " 0.688888888888889 0.311111111111111"; depth 45 ; unknown ; N/A GL195551.1 samtools variation 15626 15626 . . . alleles " C G"; frequencies " 0.429752066115702 0.570247933884298"; depth 121 ; unknown ; N/A GL195551.1 samtools variation 16352 16352 . . . alleles " A G"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL195551.1 samtools variation 16584 16584 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL195551.1 samtools variation 16732 16732 . . . alleles " G A"; frequencies " 0.739130434782609 0.260869565217391"; depth 69 ; unknown ; N/A GL195551.1 samtools variation 17314 17314 . . . alleles " T G"; frequencies " 0.649171270718232 0.350138121546961"; depth 1448 ; known ; N/A GL195551.1 samtools variation 23703 23703 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 32 ; unknown ; synonymous GL195551.1 samtools variation 23861 23861 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 56 ; unknown ; synonymous GL195551.1 samtools variation 24133 24133 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 96 ; unknown ; non-synonymous GL195551.1 samtools variation 33881 33881 . . . alleles " T A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL195571.1 samtools variation 18583 18583 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL195571.1 samtools variation 19370 19370 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL195571.1 samtools variation 28378 28378 . . . alleles " G A"; frequencies " 0.746794871794872 0.253205128205128"; depth 312 ; unknown ; N/A GL195575.1 samtools variation 9160 9160 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; known ; non-synonymous GL195575.1 samtools variation 15465 15465 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; synonymous GL195575.1 samtools variation 18965 18965 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 35 ; known ; N/A GL195581.1 samtools variation 3725 3725 . . . alleles " T G"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL195589.1 samtools variation 31838 31838 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL195603.1 samtools variation 1094 1094 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL195603.1 samtools variation 3837 3837 . . . alleles " G A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL195603.1 samtools variation 5796 5796 . . . alleles " C G"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL195603.1 samtools variation 6226 6226 . . . alleles " G A"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; known ; N/A GL195603.1 samtools variation 18212 18212 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL195603.1 samtools variation 18304 18304 . . . alleles " G C"; frequencies " 0.272727272727273 0.727272727272727"; depth 33 ; known ; N/A GL195603.1 samtools variation 21165 21165 . . . alleles " A G"; frequencies " 0.549645390070922 0.450354609929078"; depth 564 ; known ; synonymous GL195603.1 samtools variation 21230 21230 . . . alleles " A G"; frequencies " 0.565789473684211 0.434210526315789"; depth 532 ; unknown ; non-synonymous GL195603.1 samtools variation 21379 21379 . . . alleles " G A"; frequencies " 0.520588235294118 0.479411764705882"; depth 340 ; unknown ; non-synonymous GL195603.1 samtools variation 21918 21918 . . . alleles " G T"; frequencies " 0.637254901960784 0.362745098039216"; depth 408 ; unknown ; N/A GL195603.1 samtools variation 22705 22705 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL195603.1 samtools variation 23198 23198 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL195603.1 samtools variation 23968 23968 . . . alleles " C A"; frequencies " 0.314285714285714 0.685714285714286"; depth 105 ; unknown ; N/A GL195603.1 samtools variation 24040 24040 . . . alleles " G A"; frequencies " 0.715328467153285 0.284671532846715"; depth 137 ; unknown ; N/A GL195603.1 samtools variation 24178 24178 . . . alleles " G A"; frequencies " 0.316455696202532 0.683544303797468"; depth 79 ; known ; N/A GL195650.1 samtools variation 25818 25818 . . . alleles " G C"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL195659.1 samtools variation 27732 27732 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL195659.1 samtools variation 27814 27814 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL195659.1 samtools variation 27900 27900 . . . alleles " C T"; frequencies " 0.652173913043478 0.304347826086957"; depth 23 ; unknown ; N/A GL195667.1 samtools variation 15162 15162 . . . alleles " A T"; frequencies " 0.783333333333333 0.216666666666667"; depth 60 ; unknown ; N/A GL195671.1 samtools variation 6980 6980 . . . alleles " C T"; frequencies " 0.757192174913694 0.242807825086306"; depth 869 ; unknown ; N/A GL195671.1 samtools variation 18632 18632 . . . alleles " A C"; frequencies " 0.384057971014493 0.615942028985507"; depth 138 ; unknown ; N/A GL195671.1 samtools variation 21426 21426 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL195671.1 samtools variation 22120 22120 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL195671.1 samtools variation 26989 26989 . . . alleles " A C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL195689.1 samtools variation 26247 26247 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL195689.1 samtools variation 26477 26477 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL195699.1 samtools variation 6361 6361 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL195699.1 samtools variation 8792 8792 . . . alleles " A G"; frequencies " 0.211940298507463 0.788059701492537"; depth 335 ; unknown ; N/A GL195700.1 samtools variation 21147 21147 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL195700.1 samtools variation 24167 24167 . . . alleles " C A"; frequencies " 0.242424242424242 0.757575757575758"; depth 33 ; known ; N/A GL195723.1 samtools variation 19232 19232 . . . alleles " A G"; frequencies " 0.775510204081633 0.224489795918367"; depth 196 ; unknown ; N/A GL195723.1 samtools variation 19283 19283 . . . alleles " T C"; frequencies " 0.715384615384615 0.284615384615385"; depth 130 ; unknown ; N/A GL195723.1 samtools variation 19852 19852 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL195724.1 samtools variation 11109 11109 . . . alleles " T C"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; synonymous GL195724.1 samtools variation 13942 13942 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL195724.1 samtools variation 17565 17565 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL195724.1 samtools variation 21638 21638 . . . alleles " C T"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL195724.1 samtools variation 22400 22400 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 44 ; unknown ; N/A GL195726.1 samtools variation 441 441 . . . alleles " A C"; frequencies " 0.226190476190476 0.773809523809524"; depth 84 ; unknown ; non-synonymous GL195726.1 samtools variation 9512 9512 . . . alleles " C T"; frequencies " 0.55952380952381 0.44047619047619"; depth 84 ; unknown ; synonymous GL195726.1 samtools variation 9844 9844 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; non-synonymous GL195727.1 samtools variation 10129 10129 . . . alleles " T G"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL195727.1 samtools variation 10192 10192 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL195727.1 samtools variation 11122 11122 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL195727.1 samtools variation 11160 11160 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; known ; N/A GL195727.1 samtools variation 12161 12161 . . . alleles " C A"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; N/A GL195727.1 samtools variation 12247 12247 . . . alleles " C T"; frequencies " 0.308641975308642 0.691358024691358"; depth 81 ; known ; N/A GL195727.1 samtools variation 14256 14256 . . . alleles " G C"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL195727.1 samtools variation 14765 14765 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL195727.1 samtools variation 14876 14876 . . . alleles " A G"; frequencies " 0.76 0.24"; depth 25 ; known ; N/A GL195727.1 samtools variation 14885 14885 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 24 ; known ; N/A GL195727.1 samtools variation 15086 15086 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; known ; N/A GL195727.1 samtools variation 15802 15802 . . . alleles " G C"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL195727.1 samtools variation 17134 17134 . . . alleles " G A"; frequencies " 0.347457627118644 0.652542372881356"; depth 118 ; known ; N/A GL195734.1 samtools variation 3162 3162 . . . alleles " T C"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; unknown ; N/A GL195734.1 samtools variation 3201 3201 . . . alleles " T G"; frequencies " 0.285714285714286 0.714285714285714"; depth 49 ; unknown ; N/A GL195734.1 samtools variation 3334 3334 . . . alleles " G C"; frequencies " 0.229166666666667 0.770833333333333"; depth 96 ; unknown ; N/A GL195734.1 samtools variation 3375 3375 . . . alleles " T C"; frequencies " 0.282051282051282 0.717948717948718"; depth 117 ; unknown ; N/A GL195734.1 samtools variation 9909 9909 . . . alleles " A G"; frequencies " 0.285714285714286 0.714285714285714"; depth 14 ; unknown ; N/A GL195738.1 samtools variation 6713 6713 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL195738.1 samtools variation 6718 6718 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL195738.1 samtools variation 6797 6797 . . . alleles " C G"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL195738.1 samtools variation 10320 10320 . . . alleles " T A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL195738.1 samtools variation 10575 10575 . . . alleles " C T"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL195738.1 samtools variation 10576 10576 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL195738.1 samtools variation 11005 11005 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 35 ; unknown ; N/A GL195738.1 samtools variation 13438 13438 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL195738.1 samtools variation 19157 19157 . . . alleles " T A"; frequencies " 0.764705882352941 0.235294117647059"; depth 34 ; unknown ; N/A GL195747.1 samtools variation 8598 8598 . . . alleles " A T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL195753.1 samtools variation 16294 16294 . . . alleles " G C"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL195756.1 samtools variation 6606 6606 . . . alleles " G A"; frequencies " 0.699115044247788 0.300884955752212"; depth 678 ; known ; N/A GL195756.1 samtools variation 6644 6644 . . . alleles " G A"; frequencies " 0.232962447844228 0.7663421418637"; depth 1438 ; unknown ; N/A GL195756.1 samtools variation 6753 6753 . . . alleles " G C"; frequencies " 0.352912621359223 0.647087378640777"; depth 2060 ; known ; N/A GL195756.1 samtools variation 6772 6772 . . . alleles " A G"; frequencies " 0.40530303030303 0.59469696969697"; depth 1848 ; known ; N/A GL195756.1 samtools variation 8991 8991 . . . alleles " G C"; frequencies " 0.353754940711462 0.639328063241107"; depth 1012 ; unknown ; non-synonymous GL195756.1 samtools variation 9710 9710 . . . alleles " T A"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL195756.1 samtools variation 11348 11348 . . . alleles " A G"; frequencies " 0.751072961373391 0.248927038626609"; depth 932 ; unknown ; N/A GL195756.1 samtools variation 11418 11418 . . . alleles " G A"; frequencies " 0.767690253671562 0.232309746328438"; depth 749 ; unknown ; N/A GL195756.1 samtools variation 11548 11548 . . . alleles " C T"; frequencies " 0.790909090909091 0.209090909090909"; depth 330 ; unknown ; N/A GL195756.1 samtools variation 11646 11646 . . . alleles " G T"; frequencies " 0.748872180451128 0.251127819548872"; depth 665 ; unknown ; N/A GL195756.1 samtools variation 11908 11908 . . . alleles " A T"; frequencies " 0.23572744014733 0.76427255985267"; depth 543 ; unknown ; N/A GL195756.1 samtools variation 14404 14404 . . . alleles " A C"; frequencies " 0.684931506849315 0.315068493150685"; depth 73 ; unknown ; N/A GL195756.1 samtools variation 19685 19685 . . . alleles " G A"; frequencies " 0.741379310344828 0.258620689655172"; depth 174 ; known ; N/A GL195756.1 samtools variation 20426 20426 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL195779.1 samtools variation 5624 5624 . . . alleles " T C"; frequencies " 0.413793103448276 0.586206896551724"; depth 29 ; unknown ; N/A GL195779.1 samtools variation 5846 5846 . . . alleles " G A"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL195779.1 samtools variation 8777 8777 . . . alleles " C T"; frequencies " 0.600215517241379 0.399784482758621"; depth 928 ; unknown ; non-synonymous GL195779.1 samtools variation 8897 8897 . . . alleles " A C"; frequencies " 0.740157480314961 0.259842519685039"; depth 1016 ; unknown ; non-synonymous GL195779.1 samtools variation 9022 9022 . . . alleles " A G"; frequencies " 0.377453217708809 0.622546782291191"; depth 2191 ; known ; non-synonymous GL195779.1 samtools variation 9465 9465 . . . alleles " G A"; frequencies " 0.664804469273743 0.335195530726257"; depth 179 ; unknown ; N/A GL195786.1 samtools variation 11401 11401 . . . alleles " C G"; frequencies " 0.375 0.625"; depth 16 ; unknown ; non-synonymous GL195786.1 samtools variation 11438 11438 . . . alleles " G A"; frequencies " 0.434210526315789 0.565789473684211"; depth 76 ; unknown ; synonymous GL195786.1 samtools variation 11512 11512 . . . alleles " T C"; frequencies " 0.297872340425532 0.702127659574468"; depth 94 ; unknown ; non-synonymous GL195789.1 samtools variation 3678 3678 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 54 ; unknown ; N/A GL195789.1 samtools variation 5762 5762 . . . alleles " A G"; frequencies " 0.781663516068053 0.218336483931947"; depth 1058 ; unknown ; synonymous GL195789.1 samtools variation 5979 5979 . . . alleles " C T"; frequencies " 0.778581765557164 0.221418234442836"; depth 691 ; unknown ; synonymous GL195789.1 samtools variation 6251 6251 . . . alleles " G A"; frequencies " 0.797076526225279 0.202923473774721"; depth 1163 ; unknown ; synonymous GL195789.1 samtools variation 7042 7042 . . . alleles " A G"; frequencies " 0.462640736949846 0.537359263050154"; depth 977 ; unknown ; synonymous GL195789.1 samtools variation 7478 7478 . . . alleles " A G"; frequencies " 0.429083094555874 0.570916905444126"; depth 1396 ; known ; synonymous GL195789.1 samtools variation 18597 18597 . . . alleles " G T"; frequencies " 0.490662139219015 0.507640067911715"; depth 589 ; unknown ; synonymous GL195792.1 samtools variation 6671 6671 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL195792.1 samtools variation 6814 6814 . . . alleles " C T"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; unknown ; N/A GL195792.1 samtools variation 7076 7076 . . . alleles " C G"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL195792.1 samtools variation 7190 7190 . . . alleles " C T"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL195792.1 samtools variation 7275 7275 . . . alleles " C G"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL195792.1 samtools variation 14018 14018 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; non-synonymous GL195792.1 samtools variation 15904 15904 . . . alleles " A G"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; unknown ; non-synonymous GL195793.1 samtools variation 7314 7314 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; synonymous GL195793.1 samtools variation 7627 7627 . . . alleles " C T"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; known ; N/A GL195793.1 samtools variation 14727 14727 . . . alleles " C T"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; known ; synonymous GL195793.1 samtools variation 17460 17460 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL195807.1 samtools variation 14825 14825 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL195807.1 samtools variation 15332 15332 . . . alleles " G C"; frequencies " 0.298245614035088 0.701754385964912"; depth 57 ; unknown ; non-synonymous GL195807.1 samtools variation 15793 15793 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; non-synonymous GL195807.1 samtools variation 15795 15795 . . . alleles " C A"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; synonymous GL195807.1 samtools variation 18492 18492 . . . alleles " C T"; frequencies " 0.423333333333333 0.576666666666667"; depth 300 ; unknown ; synonymous GL195812.1 samtools variation 20347 20347 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL195812.1 samtools variation 20480 20480 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL195812.1 samtools variation 20571 20571 . . . alleles " G C"; frequencies " 0.684210526315789 0.315789473684211"; depth 38 ; unknown ; N/A GL195812.1 samtools variation 20585 20585 . . . alleles " G A"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL195812.1 samtools variation 20683 20683 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 24 ; unknown ; N/A GL195812.1 samtools variation 20695 20695 . . . alleles " G T"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL195827.1 samtools variation 1137 1137 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL195827.1 samtools variation 1159 1159 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL195827.1 samtools variation 1675 1675 . . . alleles " A T"; frequencies " 0.347826086956522 0.652173913043478"; depth 23 ; unknown ; N/A GL195827.1 samtools variation 1773 1773 . . . alleles " T C"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL195827.1 samtools variation 1822 1822 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL195827.1 samtools variation 2906 2906 . . . alleles " C G"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL195827.1 samtools variation 3243 3243 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL195827.1 samtools variation 4429 4429 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL195827.1 samtools variation 6453 6453 . . . alleles " T C"; frequencies " 0.222222222222222 0.777777777777778"; depth 27 ; unknown ; N/A GL195827.1 samtools variation 6538 6538 . . . alleles " C A"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL195834.1 samtools variation 2976 2976 . . . alleles " A G"; frequencies " 0.73593570608496 0.26406429391504"; depth 871 ; unknown ; synonymous GL195836.1 samtools variation 1243 1243 . . . alleles " C T"; frequencies " 0.59375 0.40625"; depth 32 ; unknown ; N/A GL195836.1 samtools variation 4555 4555 . . . alleles " A T"; frequencies " 0.758620689655172 0.241379310344828"; depth 58 ; unknown ; N/A GL195836.1 samtools variation 4575 4575 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 45 ; unknown ; N/A GL195836.1 samtools variation 4789 4789 . . . alleles " T A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL195836.1 samtools variation 5359 5359 . . . alleles " G C"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL195836.1 samtools variation 5697 5697 . . . alleles " T A"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL195836.1 samtools variation 5781 5781 . . . alleles " C T"; frequencies " 0.65 0.35"; depth 40 ; unknown ; N/A GL195836.1 samtools variation 5813 5813 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; N/A GL195836.1 samtools variation 6420 6420 . . . alleles " A G"; frequencies " 0.72 0.28"; depth 25 ; unknown ; N/A GL195836.1 samtools variation 6427 6427 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL195836.1 samtools variation 7112 7112 . . . alleles " A G"; frequencies " 0.283018867924528 0.716981132075472"; depth 53 ; unknown ; N/A GL195836.1 samtools variation 7263 7263 . . . alleles " C T"; frequencies " 0.73469387755102 0.26530612244898"; depth 49 ; unknown ; N/A GL195836.1 samtools variation 7322 7322 . . . alleles " A G"; frequencies " 0.623529411764706 0.376470588235294"; depth 170 ; unknown ; N/A GL195836.1 samtools variation 7332 7332 . . . alleles " A T"; frequencies " 0.581632653061224 0.418367346938776"; depth 196 ; unknown ; N/A GL195836.1 samtools variation 7490 7490 . . . alleles " T G"; frequencies " 0.549019607843137 0.450980392156863"; depth 204 ; unknown ; N/A GL195836.1 samtools variation 8310 8310 . . . alleles " C T"; frequencies " 0.534653465346535 0.465346534653465"; depth 101 ; unknown ; N/A GL195836.1 samtools variation 8378 8378 . . . alleles " C T"; frequencies " 0.523809523809524 0.476190476190476"; depth 126 ; unknown ; N/A GL195836.1 samtools variation 8397 8397 . . . alleles " T C"; frequencies " 0.693333333333333 0.306666666666667"; depth 75 ; unknown ; N/A GL195836.1 samtools variation 8428 8428 . . . alleles " G A"; frequencies " 0.71830985915493 0.28169014084507"; depth 71 ; unknown ; N/A GL195836.1 samtools variation 8506 8506 . . . alleles " T G"; frequencies " 0.3 0.7"; depth 30 ; unknown ; N/A GL195836.1 samtools variation 8520 8520 . . . alleles " T A"; frequencies " 0.222222222222222 0.777777777777778"; depth 18 ; unknown ; N/A GL195836.1 samtools variation 8583 8583 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL195836.1 samtools variation 8776 8776 . . . alleles " C T"; frequencies " 0.62037037037037 0.37962962962963"; depth 108 ; unknown ; N/A GL195836.1 samtools variation 9004 9004 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 65 ; unknown ; N/A GL195836.1 samtools variation 9031 9031 . . . alleles " T G"; frequencies " 0.32258064516129 0.67741935483871"; depth 62 ; unknown ; N/A GL195836.1 samtools variation 10465 10465 . . . alleles " A G"; frequencies " 0.606060606060606 0.393939393939394"; depth 33 ; unknown ; N/A GL195836.1 samtools variation 10720 10720 . . . alleles " T C"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; unknown ; N/A GL195836.1 samtools variation 10778 10778 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL195836.1 samtools variation 10911 10911 . . . alleles " T C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL195836.1 samtools variation 11738 11738 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL195836.1 samtools variation 11745 11745 . . . alleles " A G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL195836.1 samtools variation 13646 13646 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL195836.1 samtools variation 14852 14852 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL195836.1 samtools variation 16677 16677 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL195836.1 samtools variation 16770 16770 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL195836.1 samtools variation 19246 19246 . . . alleles " T C"; frequencies " 0.258064516129032 0.741935483870968"; depth 31 ; unknown ; N/A GL195836.1 samtools variation 19369 19369 . . . alleles " G T"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; unknown ; N/A GL195842.1 samtools variation 11430 11430 . . . alleles " A G"; frequencies " 0.619047619047619 0.380952380952381"; depth 42 ; unknown ; N/A GL195842.1 samtools variation 12305 12305 . . . alleles " G A"; frequencies " 0.633333333333333 0.366666666666667"; depth 60 ; unknown ; N/A GL195842.1 samtools variation 15503 15503 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL195846.1 samtools variation 7635 7635 . . . alleles " T C"; frequencies " 0.341176470588235 0.658823529411765"; depth 85 ; known ; non-synonymous GL195863.1 samtools variation 4135 4135 . . . alleles " G A"; frequencies " 0.79559748427673 0.20440251572327"; depth 318 ; unknown ; synonymous GL195869.1 samtools variation 2699 2699 . . . alleles " G C"; frequencies " 0.36 0.64"; depth 50 ; unknown ; N/A GL195869.1 samtools variation 3067 3067 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL195869.1 samtools variation 3135 3135 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL195869.1 samtools variation 9417 9417 . . . alleles " G C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL195869.1 samtools variation 12738 12738 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 36 ; unknown ; N/A GL195869.1 samtools variation 12752 12752 . . . alleles " C A"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL195869.1 samtools variation 12820 12820 . . . alleles " C T"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL195869.1 samtools variation 12956 12956 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL195869.1 samtools variation 12966 12966 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL195869.1 samtools variation 13090 13090 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL195869.1 samtools variation 13292 13292 . . . alleles " A T"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL195869.1 samtools variation 13437 13437 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL195869.1 samtools variation 15360 15360 . . . alleles " C A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL195880.1 samtools variation 6315 6315 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL195884.1 samtools variation 18352 18352 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 50 ; unknown ; N/A GL195884.1 samtools variation 18405 18405 . . . alleles " A C"; frequencies " 0.232142857142857 0.767857142857143"; depth 56 ; known ; N/A GL195886.1 samtools variation 516 516 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL195894.1 samtools variation 15963 15963 . . . alleles " C G"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL195894.1 samtools variation 16082 16082 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; known ; N/A GL195920.1 samtools variation 5738 5738 . . . alleles " C T"; frequencies " 0.783132530120482 0.216867469879518"; depth 83 ; unknown ; N/A GL195920.1 samtools variation 6001 6001 . . . alleles " G A"; frequencies " 0.752941176470588 0.247058823529412"; depth 85 ; unknown ; N/A GL195928.1 samtools variation 491 491 . . . alleles " G A"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL195928.1 samtools variation 874 874 . . . alleles " A G"; frequencies " 0.776470588235294 0.211764705882353"; depth 85 ; known ; N/A GL195928.1 samtools variation 921 921 . . . alleles " T C"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL195928.1 samtools variation 6921 6921 . . . alleles " G A"; frequencies " 0.709677419354839 0.290322580645161"; depth 93 ; unknown ; synonymous GL195928.1 samtools variation 9450 9450 . . . alleles " T G"; frequencies " 0.477611940298507 0.522388059701492"; depth 134 ; unknown ; synonymous GL195928.1 samtools variation 11310 11310 . . . alleles " G A"; frequencies " 0.728260869565217 0.271739130434783"; depth 92 ; unknown ; N/A GL195932.1 samtools variation 3930 3930 . . . alleles " C T"; frequencies " 0.645833333333333 0.354166666666667"; depth 48 ; unknown ; synonymous GL195932.1 samtools variation 11541 11541 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; synonymous GL195932.1 samtools variation 12496 12496 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 32 ; unknown ; synonymous GL195932.1 samtools variation 12517 12517 . . . alleles " C T"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; synonymous GL195932.1 samtools variation 12586 12586 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; synonymous GL195932.1 samtools variation 12616 12616 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; synonymous GL195934.1 samtools variation 15197 15197 . . . alleles " G A"; frequencies " 0.513513513513513 0.486486486486487"; depth 37 ; unknown ; N/A GL195934.1 samtools variation 15217 15217 . . . alleles " A G"; frequencies " 0.439024390243902 0.560975609756098"; depth 41 ; unknown ; N/A GL195934.1 samtools variation 15348 15348 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL195934.1 samtools variation 16219 16219 . . . alleles " C T"; frequencies " 0.464285714285714 0.535714285714286"; depth 28 ; unknown ; N/A GL195934.1 samtools variation 16305 16305 . . . alleles " T G"; frequencies " 0.724137931034483 0.275862068965517"; depth 58 ; unknown ; N/A GL195934.1 samtools variation 16386 16386 . . . alleles " T A"; frequencies " 0.282608695652174 0.717391304347826"; depth 46 ; known ; N/A GL195934.1 samtools variation 16391 16391 . . . alleles " A G"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; known ; N/A GL195934.1 samtools variation 16466 16466 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL195934.1 samtools variation 16551 16551 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL195934.1 samtools variation 16662 16662 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL195934.1 samtools variation 16682 16682 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL195934.1 samtools variation 17458 17458 . . . alleles " C A"; frequencies " 0.229166666666667 0.770833333333333"; depth 48 ; unknown ; N/A GL195934.1 samtools variation 17496 17496 . . . alleles " G A"; frequencies " 0.269230769230769 0.730769230769231"; depth 26 ; unknown ; N/A GL195934.1 samtools variation 17507 17507 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL195936.1 samtools variation 1071 1071 . . . alleles " T A"; frequencies " 0.771428571428571 0.2"; depth 35 ; unknown ; non-synonymous GL195936.1 samtools variation 1101 1101 . . . alleles " T C"; frequencies " 0.411764705882353 0.588235294117647"; depth 34 ; unknown ; non-synonymous GL195936.1 samtools variation 1885 1885 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; known ; non-synonymous GL195936.1 samtools variation 3676 3676 . . . alleles " A G"; frequencies " 0.760416666666667 0.239583333333333"; depth 96 ; unknown ; N/A GL195936.1 samtools variation 9029 9029 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL195936.1 samtools variation 11984 11984 . . . alleles " G A"; frequencies " 0.72 0.28"; depth 25 ; unknown ; synonymous GL195944.1 samtools variation 6566 6566 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL195944.1 samtools variation 6569 6569 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL195946.1 samtools variation 887 887 . . . alleles " A T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL195946.1 samtools variation 898 898 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL195946.1 samtools variation 955 955 . . . alleles " G T"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL195946.1 samtools variation 3197 3197 . . . alleles " T G"; frequencies " 0.457142857142857 0.542857142857143"; depth 35 ; unknown ; N/A GL195946.1 samtools variation 3985 3985 . . . alleles " A C"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL195946.1 samtools variation 4014 4014 . . . alleles " A C"; frequencies " 0.646153846153846 0.353846153846154"; depth 65 ; unknown ; N/A GL195946.1 samtools variation 4066 4066 . . . alleles " T C"; frequencies " 0.622641509433962 0.377358490566038"; depth 53 ; unknown ; N/A GL195946.1 samtools variation 4176 4176 . . . alleles " C G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL195946.1 samtools variation 5401 5401 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL195946.1 samtools variation 5486 5486 . . . alleles " T G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL195946.1 samtools variation 5608 5608 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL195946.1 samtools variation 9175 9175 . . . alleles " A G"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL195946.1 samtools variation 9522 9522 . . . alleles " A C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL195946.1 samtools variation 11009 11009 . . . alleles " A G"; frequencies " 0.467105263157895 0.532894736842105"; depth 152 ; unknown ; N/A GL195946.1 samtools variation 11501 11501 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL195946.1 samtools variation 11502 11502 . . . alleles " A G"; frequencies " 0.795454545454545 0.204545454545455"; depth 44 ; unknown ; N/A GL195946.1 samtools variation 11575 11575 . . . alleles " T G"; frequencies " 0.625 0.375"; depth 40 ; unknown ; N/A GL195946.1 samtools variation 11787 11787 . . . alleles " A T"; frequencies " 0.325581395348837 0.674418604651163"; depth 43 ; unknown ; N/A GL195946.1 samtools variation 11883 11883 . . . alleles " C T"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; unknown ; N/A GL195946.1 samtools variation 12033 12033 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL195946.1 samtools variation 12034 12034 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL195946.1 samtools variation 12081 12081 . . . alleles " A T"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL195946.1 samtools variation 12233 12233 . . . alleles " G T"; frequencies " 0.772727272727273 0.227272727272727"; depth 44 ; unknown ; N/A GL195946.1 samtools variation 13855 13855 . . . alleles " A C"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL195946.1 samtools variation 14437 14437 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL195946.1 samtools variation 14438 14438 . . . alleles " G T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL195946.1 samtools variation 14515 14515 . . . alleles " C T"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL195956.1 samtools variation 9594 9594 . . . alleles " G A"; frequencies " 0.756410256410256 0.230769230769231"; depth 78 ; unknown ; non-synonymous GL195956.1 samtools variation 9609 9609 . . . alleles " C G"; frequencies " 0.670731707317073 0.317073170731707"; depth 82 ; unknown ; non-synonymous GL195957.1 samtools variation 14470 14470 . . . alleles " G C"; frequencies " 0.272727272727273 0.727272727272727"; depth 22 ; unknown ; N/A GL195957.1 samtools variation 15577 15577 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL195963.1 samtools variation 7920 7920 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL195963.1 samtools variation 7921 7921 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL195963.1 samtools variation 7928 7928 . . . alleles " G A"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL195963.1 samtools variation 8158 8158 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL195963.1 samtools variation 8275 8275 . . . alleles " G C"; frequencies " 0.6 0.4"; depth 40 ; unknown ; N/A GL195963.1 samtools variation 8280 8280 . . . alleles " G T"; frequencies " 0.473684210526316 0.526315789473684"; depth 38 ; unknown ; N/A GL195963.1 samtools variation 8341 8341 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL195963.1 samtools variation 8396 8396 . . . alleles " T C"; frequencies " 0.755102040816326 0.244897959183673"; depth 49 ; unknown ; N/A GL195963.1 samtools variation 8435 8435 . . . alleles " G A"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL195963.1 samtools variation 8469 8469 . . . alleles " G C"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; unknown ; N/A GL196006.1 samtools variation 6735 6735 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; known ; N/A GL196006.1 samtools variation 6740 6740 . . . alleles " C A"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; known ; N/A GL196006.1 samtools variation 12604 12604 . . . alleles " A T"; frequencies " 0.41025641025641 0.58974358974359"; depth 39 ; unknown ; N/A GL196006.1 samtools variation 12647 12647 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 38 ; unknown ; N/A GL196006.1 samtools variation 13091 13091 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL196006.1 samtools variation 13103 13103 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL196006.1 samtools variation 13237 13237 . . . alleles " G C"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL196006.1 samtools variation 13261 13261 . . . alleles " C T"; frequencies " 0.32 0.68"; depth 25 ; unknown ; N/A GL196006.1 samtools variation 13300 13300 . . . alleles " A C"; frequencies " 0.67741935483871 0.32258064516129"; depth 31 ; known ; N/A GL196006.1 samtools variation 13395 13395 . . . alleles " C A"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL196006.1 samtools variation 13501 13501 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL196006.1 samtools variation 13529 13529 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL196018.1 samtools variation 9727 9727 . . . alleles " G C"; frequencies " 0.729957805907173 0.270042194092827"; depth 237 ; known ; N/A GL196020.1 samtools variation 1254 1254 . . . alleles " T C"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; known ; non-synonymous GL196020.1 samtools variation 1711 1711 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; known ; non-synonymous GL196020.1 samtools variation 2053 2053 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 20 ; known ; non-synonymous GL196020.1 samtools variation 2610 2610 . . . alleles " A G"; frequencies " 0.484848484848485 0.515151515151515"; depth 33 ; unknown ; synonymous GL196020.1 samtools variation 2624 2624 . . . alleles " G A"; frequencies " 0.694444444444444 0.305555555555556"; depth 36 ; unknown ; non-synonymous GL196028.1 samtools variation 607 607 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL196028.1 samtools variation 3356 3356 . . . alleles " G T"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL196034.1 samtools variation 11144 11144 . . . alleles " A C"; frequencies " 0.338709677419355 0.661290322580645"; depth 62 ; unknown ; N/A GL196050.1 samtools variation 551 551 . . . alleles " T C"; frequencies " 0.292469352014011 0.70753064798599"; depth 571 ; unknown ; N/A GL196050.1 samtools variation 552 552 . . . alleles " G A"; frequencies " 0.522648083623693 0.477351916376307"; depth 574 ; unknown ; N/A GL196050.1 samtools variation 655 655 . . . alleles " A C"; frequencies " 0.325463743676223 0.674536256323777"; depth 593 ; unknown ; N/A GL196050.1 samtools variation 732 732 . . . alleles " G A"; frequencies " 0.613259668508287 0.386740331491713"; depth 181 ; unknown ; N/A GL196050.1 samtools variation 735 735 . . . alleles " G A"; frequencies " 0.620111731843575 0.379888268156425"; depth 179 ; unknown ; N/A GL196050.1 samtools variation 889 889 . . . alleles " A T"; frequencies " 0.30952380952381 0.69047619047619"; depth 42 ; unknown ; N/A GL196050.1 samtools variation 900 900 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 56 ; unknown ; N/A GL196050.1 samtools variation 1051 1051 . . . alleles " C T"; frequencies " 0.567307692307692 0.432692307692308"; depth 208 ; unknown ; N/A GL196075.1 samtools variation 3601 3601 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL196075.1 samtools variation 4511 4511 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; known ; N/A GL196075.1 samtools variation 4545 4545 . . . alleles " G C"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL196075.1 samtools variation 4601 4601 . . . alleles " G A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL196085.1 samtools variation 5167 5167 . . . alleles " T A"; frequencies " 0.55 0.45"; depth 20 ; known ; N/A GL196085.1 samtools variation 8304 8304 . . . alleles " C G"; frequencies " 0.321063394683027 0.678936605316973"; depth 489 ; known ; synonymous GL196087.1 samtools variation 2162 2162 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 35 ; known ; N/A GL196087.1 samtools variation 6925 6925 . . . alleles " C A"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL196087.1 samtools variation 8950 8950 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL196096.1 samtools variation 5839 5839 . . . alleles " C T"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL196096.1 samtools variation 6044 6044 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL196096.1 samtools variation 6138 6138 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL196097.1 samtools variation 3233 3233 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL196097.1 samtools variation 13244 13244 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL196103.1 samtools variation 226 226 . . . alleles " T C"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; known ; non-synonymous GL196103.1 samtools variation 262 262 . . . alleles " G A"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; known ; non-synonymous GL196109.1 samtools variation 1214 1214 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; known ; N/A GL196109.1 samtools variation 1248 1248 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL196109.1 samtools variation 1404 1404 . . . alleles " G A"; frequencies " 0.344827586206897 0.655172413793103"; depth 29 ; unknown ; N/A GL196109.1 samtools variation 2231 2231 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL196109.1 samtools variation 2329 2329 . . . alleles " G A"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; N/A GL196109.1 samtools variation 2526 2526 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL196109.1 samtools variation 2637 2637 . . . alleles " G A"; frequencies " 0.633333333333333 0.333333333333333"; depth 30 ; unknown ; N/A GL196109.1 samtools variation 11775 11775 . . . alleles " C A"; frequencies " 0.49537037037037 0.493055555555556"; depth 432 ; unknown ; N/A GL196109.1 samtools variation 11889 11889 . . . alleles " G C"; frequencies " 0.584848484848485 0.415151515151515"; depth 330 ; unknown ; N/A GL196109.1 samtools variation 12128 12128 . . . alleles " A T"; frequencies " 0.760683760683761 0.239316239316239"; depth 234 ; unknown ; N/A GL196109.1 samtools variation 12393 12393 . . . alleles " T A"; frequencies " 0.741071428571429 0.258928571428571"; depth 448 ; unknown ; N/A GL196109.1 samtools variation 12470 12470 . . . alleles " A G"; frequencies " 0.798882681564246 0.201117318435754"; depth 179 ; unknown ; N/A GL196109.1 samtools variation 12618 12618 . . . alleles " T C"; frequencies " 0.693877551020408 0.306122448979592"; depth 196 ; unknown ; N/A GL196109.1 samtools variation 12641 12641 . . . alleles " T C"; frequencies " 0.735159817351598 0.264840182648402"; depth 219 ; unknown ; N/A GL196109.1 samtools variation 12642 12642 . . . alleles " A T"; frequencies " 0.701834862385321 0.298165137614679"; depth 218 ; unknown ; N/A GL196109.1 samtools variation 12742 12742 . . . alleles " T G"; frequencies " 0.430523917995444 0.569476082004556"; depth 439 ; unknown ; N/A GL196109.1 samtools variation 12857 12857 . . . alleles " C T"; frequencies " 0.729857819905213 0.270142180094787"; depth 211 ; unknown ; N/A GL196109.1 samtools variation 12878 12878 . . . alleles " C A"; frequencies " 0.778947368421053 0.221052631578947"; depth 95 ; unknown ; N/A GL196118.1 samtools variation 1407 1407 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; known ; non-synonymous GL196127.1 samtools variation 873 873 . . . alleles " A T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL196143.1 samtools variation 3336 3336 . . . alleles " G C"; frequencies " 0.65625 0.34375"; depth 96 ; unknown ; non-synonymous GL196143.1 samtools variation 3373 3373 . . . alleles " A T"; frequencies " 0.761904761904762 0.238095238095238"; depth 126 ; unknown ; non-synonymous GL196144.1 samtools variation 1672 1672 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL196150.1 samtools variation 4330 4330 . . . alleles " T C"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; known ; N/A GL196150.1 samtools variation 4535 4535 . . . alleles " A G"; frequencies " 0.676923076923077 0.323076923076923"; depth 65 ; unknown ; N/A GL196150.1 samtools variation 4640 4640 . . . alleles " T C"; frequencies " 0.403669724770642 0.596330275229358"; depth 109 ; known ; N/A GL196150.1 samtools variation 4682 4682 . . . alleles " C T"; frequencies " 0.483050847457627 0.516949152542373"; depth 118 ; unknown ; N/A GL196150.1 samtools variation 4792 4792 . . . alleles " A G"; frequencies " 0.567567567567568 0.432432432432432"; depth 111 ; known ; N/A GL196150.1 samtools variation 4980 4980 . . . alleles " A C"; frequencies " 0.531645569620253 0.468354430379747"; depth 79 ; unknown ; N/A GL196150.1 samtools variation 5002 5002 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 84 ; known ; N/A GL196150.1 samtools variation 5083 5083 . . . alleles " C T"; frequencies " 0.423728813559322 0.576271186440678"; depth 59 ; known ; N/A GL196150.1 samtools variation 6746 6746 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL196150.1 samtools variation 7096 7096 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL196161.1 samtools variation 2610 2610 . . . alleles " C T"; frequencies " 0.584415584415584 0.415584415584416"; depth 77 ; unknown ; synonymous GL196161.1 samtools variation 2737 2737 . . . alleles " G C"; frequencies " 0.743119266055046 0.256880733944954"; depth 109 ; unknown ; non-synonymous GL196161.1 samtools variation 2759 2759 . . . alleles " C T"; frequencies " 0.662650602409639 0.337349397590361"; depth 83 ; unknown ; non-synonymous GL196161.1 samtools variation 2766 2766 . . . alleles " T C"; frequencies " 0.653846153846154 0.346153846153846"; depth 78 ; unknown ; synonymous GL196161.1 samtools variation 3264 3264 . . . alleles " G T"; frequencies " 0.38961038961039 0.61038961038961"; depth 77 ; known ; non-synonymous GL196161.1 samtools variation 5833 5833 . . . alleles " T G"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL196163.1 samtools variation 3525 3525 . . . alleles " C T"; frequencies " 0.742424242424242 0.257575757575758"; depth 66 ; unknown ; N/A GL196165.1 samtools variation 183 183 . . . alleles " A C"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL196165.1 samtools variation 193 193 . . . alleles " C T"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL196165.1 samtools variation 214 214 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 30 ; unknown ; N/A GL196165.1 samtools variation 728 728 . . . alleles " G C"; frequencies " 0.339622641509434 0.660377358490566"; depth 53 ; unknown ; N/A GL196165.1 samtools variation 733 733 . . . alleles " A G"; frequencies " 0.377777777777778 0.622222222222222"; depth 45 ; unknown ; N/A GL196179.1 samtools variation 4517 4517 . . . alleles " T C"; frequencies " 0.625 0.375"; depth 112 ; unknown ; N/A GL196189.1 samtools variation 1196 1196 . . . alleles " T C"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL196189.1 samtools variation 1272 1272 . . . alleles " G C"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL196189.1 samtools variation 1410 1410 . . . alleles " C G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL196189.1 samtools variation 1419 1419 . . . alleles " C T"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL196189.1 samtools variation 1430 1430 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL196189.1 samtools variation 1435 1435 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL196189.1 samtools variation 5324 5324 . . . alleles " C T"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL196196.1 samtools variation 323 323 . . . alleles " C A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL196202.1 samtools variation 5150 5150 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; known ; N/A GL196202.1 samtools variation 5278 5278 . . . alleles " C A"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL196202.1 samtools variation 5419 5419 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL196202.1 samtools variation 5545 5545 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL196202.1 samtools variation 8297 8297 . . . alleles " T C"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; known ; N/A GL196202.1 samtools variation 9984 9984 . . . alleles " C T"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; known ; N/A GL196223.1 samtools variation 5172 5172 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL196223.1 samtools variation 6480 6480 . . . alleles " C T"; frequencies " 0.782178217821782 0.217821782178218"; depth 303 ; unknown ; N/A GL196223.1 samtools variation 6533 6533 . . . alleles " T A"; frequencies " 0.63030303030303 0.36969696969697"; depth 330 ; unknown ; N/A GL196223.1 samtools variation 6581 6581 . . . alleles " C T"; frequencies " 0.791519434628975 0.20565371024735"; depth 1415 ; unknown ; synonymous GL196223.1 samtools variation 6584 6584 . . . alleles " T C"; frequencies " 0.729895104895105 0.263111888111888"; depth 1144 ; unknown ; synonymous GL196223.1 samtools variation 6713 6713 . . . alleles " T A"; frequencies " 0.71606334841629 0.283371040723982"; depth 3536 ; unknown ; synonymous GL196223.1 samtools variation 6743 6743 . . . alleles " A G"; frequencies " 0.48120041393584 0.51879958606416"; depth 2899 ; unknown ; synonymous GL196223.1 samtools variation 6781 6781 . . . alleles " C A"; frequencies " 0.774007876401091 0.225689185095426"; depth 3301 ; unknown ; non-synonymous GL196223.1 samtools variation 6893 6893 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; known ; N/A GL196223.1 samtools variation 6968 6968 . . . alleles " C T"; frequencies " 0.624198375374092 0.375374091492091"; depth 2339 ; unknown ; synonymous GL196223.1 samtools variation 6969 6969 . . . alleles " G A"; frequencies " 0.646711635750422 0.353288364249578"; depth 2372 ; unknown ; non-synonymous GL196223.1 samtools variation 6980 6980 . . . alleles " G A"; frequencies " 0.690602836879433 0.309397163120567"; depth 2256 ; known ; synonymous GL196223.1 samtools variation 7042 7042 . . . alleles " A G"; frequencies " 0.54010152284264 0.45989847715736"; depth 1970 ; unknown ; non-synonymous GL196223.1 samtools variation 7045 7045 . . . alleles " G T"; frequencies " 0.592242665340627 0.407757334659373"; depth 2011 ; unknown ; non-synonymous GL196223.1 samtools variation 7046 7046 . . . alleles " G A"; frequencies " 0.522410358565737 0.477589641434263"; depth 2008 ; unknown ; synonymous GL196225.1 samtools variation 8047 8047 . . . alleles " C T"; frequencies " 0.707988980716253 0.292011019283747"; depth 726 ; unknown ; N/A GL196225.1 samtools variation 8085 8085 . . . alleles " G A"; frequencies " 0.576754385964912 0.423245614035088"; depth 456 ; unknown ; N/A GL196229.1 samtools variation 10461 10461 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL196230.1 samtools variation 7727 7727 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 126 ; unknown ; N/A GL196238.1 samtools variation 2281 2281 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; known ; N/A GL196239.1 samtools variation 5651 5651 . . . alleles " A C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL196239.1 samtools variation 7111 7111 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL196256.1 samtools variation 8003 8003 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 48 ; unknown ; N/A GL196265.1 samtools variation 632 632 . . . alleles " C T"; frequencies " 0.318181818181818 0.681818181818182"; depth 22 ; known ; N/A GL196265.1 samtools variation 1372 1372 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL196276.1 samtools variation 2344 2344 . . . alleles " T C"; frequencies " 0.458333333333333 0.541666666666667"; depth 24 ; unknown ; N/A GL196276.1 samtools variation 2366 2366 . . . alleles " C T"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL196276.1 samtools variation 2843 2843 . . . alleles " T C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL196276.1 samtools variation 2855 2855 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL196276.1 samtools variation 2889 2889 . . . alleles " T C"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL196276.1 samtools variation 2890 2890 . . . alleles " G T"; frequencies " 0.44 0.56"; depth 25 ; unknown ; N/A GL196276.1 samtools variation 3070 3070 . . . alleles " A T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL196287.1 samtools variation 4960 4960 . . . alleles " A G"; frequencies " 0.223300970873786 0.776699029126214"; depth 103 ; unknown ; N/A GL196287.1 samtools variation 5211 5211 . . . alleles " T C"; frequencies " 0.791044776119403 0.208955223880597"; depth 67 ; unknown ; synonymous GL196287.1 samtools variation 5354 5354 . . . alleles " A C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; non-synonymous GL196290.1 samtools variation 2706 2706 . . . alleles " G A"; frequencies " 0.681443298969072 0.318556701030928"; depth 1940 ; unknown ; N/A GL196290.1 samtools variation 2756 2756 . . . alleles " T G"; frequencies " 0.641495601173021 0.358504398826979"; depth 1364 ; unknown ; N/A GL196290.1 samtools variation 2817 2817 . . . alleles " C G"; frequencies " 0.448478900883219 0.551521099116781"; depth 1019 ; unknown ; N/A GL196290.1 samtools variation 2864 2864 . . . alleles " A T"; frequencies " 0.596558317399618 0.403441682600382"; depth 523 ; unknown ; N/A GL196290.1 samtools variation 2867 2867 . . . alleles " G T"; frequencies " 0.590818363273453 0.409181636726547"; depth 501 ; unknown ; N/A GL196290.1 samtools variation 2898 2898 . . . alleles " A C"; frequencies " 0.616751269035533 0.383248730964467"; depth 394 ; known ; N/A GL196290.1 samtools variation 3095 3095 . . . alleles " G A"; frequencies " 0.421875 0.578125"; depth 64 ; unknown ; N/A GL196290.1 samtools variation 3099 3099 . . . alleles " C T"; frequencies " 0.442622950819672 0.557377049180328"; depth 61 ; unknown ; N/A GL196290.1 samtools variation 3212 3212 . . . alleles " C T"; frequencies " 0.208 0.792"; depth 125 ; known ; N/A GL196290.1 samtools variation 4177 4177 . . . alleles " C T"; frequencies " 0.326086956521739 0.673913043478261"; depth 276 ; known ; non-synonymous GL196290.1 samtools variation 4507 4507 . . . alleles " G A"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; unknown ; N/A GL196290.1 samtools variation 6610 6610 . . . alleles " C A"; frequencies " 0.673913043478261 0.326086956521739"; depth 46 ; known ; N/A GL196290.1 samtools variation 6701 6701 . . . alleles " C A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; known ; N/A GL196290.1 samtools variation 6998 6998 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 46 ; unknown ; N/A GL196290.1 samtools variation 7159 7159 . . . alleles " C G"; frequencies " 0.41726618705036 0.58273381294964"; depth 417 ; known ; N/A GL196290.1 samtools variation 7235 7235 . . . alleles " T C"; frequencies " 0.46875 0.53125"; depth 32 ; unknown ; N/A GL196305.1 samtools variation 6240 6240 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 16 ; unknown ; N/A GL196305.1 samtools variation 6262 6262 . . . alleles " G T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL196305.1 samtools variation 6348 6348 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL196305.1 samtools variation 6775 6775 . . . alleles " T C"; frequencies " 0.531914893617021 0.468085106382979"; depth 47 ; unknown ; N/A GL196305.1 samtools variation 6793 6793 . . . alleles " T C"; frequencies " 0.622641509433962 0.377358490566038"; depth 53 ; unknown ; N/A GL196305.1 samtools variation 6968 6968 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; known ; N/A GL196306.1 samtools variation 2756 2756 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; known ; N/A GL196306.1 samtools variation 2764 2764 . . . alleles " A C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL196306.1 samtools variation 2783 2783 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL196306.1 samtools variation 2858 2858 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; known ; N/A GL196306.1 samtools variation 4501 4501 . . . alleles " A T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL196306.1 samtools variation 4785 4785 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; known ; N/A GL196306.1 samtools variation 5448 5448 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL196318.1 samtools variation 4144 4144 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; non-synonymous GL196318.1 samtools variation 4931 4931 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; non-synonymous GL196318.1 samtools variation 6973 6973 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; synonymous GL196343.1 samtools variation 567 567 . . . alleles " C T"; frequencies " 0.419354838709677 0.580645161290323"; depth 31 ; unknown ; N/A GL196343.1 samtools variation 1005 1005 . . . alleles " G C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL196343.1 samtools variation 5174 5174 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL196361.1 samtools variation 1084 1084 . . . alleles " T C"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL196361.1 samtools variation 1177 1177 . . . alleles " C A"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL196361.1 samtools variation 1242 1242 . . . alleles " C T"; frequencies " 0.256410256410256 0.735042735042735"; depth 117 ; unknown ; synonymous GL196361.1 samtools variation 1699 1699 . . . alleles " C T"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL196361.1 samtools variation 2327 2327 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL196361.1 samtools variation 2341 2341 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL196361.1 samtools variation 2637 2637 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL196361.1 samtools variation 2721 2721 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL196361.1 samtools variation 2731 2731 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL196361.1 samtools variation 2788 2788 . . . alleles " C T"; frequencies " 0.368421052631579 0.631578947368421"; depth 19 ; unknown ; N/A GL196361.1 samtools variation 2815 2815 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL196361.1 samtools variation 2914 2914 . . . alleles " G T"; frequencies " 0.366197183098592 0.633802816901408"; depth 71 ; unknown ; synonymous GL196361.1 samtools variation 3410 3410 . . . alleles " T C"; frequencies " 0.72 0.28"; depth 50 ; unknown ; N/A GL196361.1 samtools variation 3441 3441 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 35 ; unknown ; N/A GL196361.1 samtools variation 3496 3496 . . . alleles " G C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL196361.1 samtools variation 3515 3515 . . . alleles " C G"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; N/A GL196361.1 samtools variation 4233 4233 . . . alleles " G C"; frequencies " 0.361111111111111 0.638888888888889"; depth 36 ; unknown ; N/A GL196361.1 samtools variation 4387 4387 . . . alleles " G A"; frequencies " 0.504347826086956 0.495652173913044"; depth 115 ; unknown ; synonymous GL196361.1 samtools variation 4408 4408 . . . alleles " C A"; frequencies " 0.300884955752212 0.699115044247788"; depth 113 ; unknown ; non-synonymous GL196361.1 samtools variation 5091 5091 . . . alleles " G C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL196361.1 samtools variation 5103 5103 . . . alleles " T C"; frequencies " 0.235294117647059 0.764705882352941"; depth 17 ; unknown ; N/A GL196361.1 samtools variation 5278 5278 . . . alleles " A T"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL196361.1 samtools variation 5851 5851 . . . alleles " G T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL196361.1 samtools variation 6391 6391 . . . alleles " C G"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; non-synonymous GL196361.1 samtools variation 6401 6401 . . . alleles " T A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; non-synonymous GL196361.1 samtools variation 6708 6708 . . . alleles " G C"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL196361.1 samtools variation 6875 6875 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 34 ; unknown ; N/A GL196361.1 samtools variation 6880 6880 . . . alleles " G A"; frequencies " 0.447368421052632 0.552631578947368"; depth 38 ; unknown ; N/A GL196361.1 samtools variation 6901 6901 . . . alleles " G T"; frequencies " 0.769230769230769 0.205128205128205"; depth 39 ; unknown ; N/A GL196363.1 samtools variation 2332 2332 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL196363.1 samtools variation 6283 6283 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL196381.1 samtools variation 670 670 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL196381.1 samtools variation 827 827 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL196381.1 samtools variation 860 860 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL196381.1 samtools variation 966 966 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL196381.1 samtools variation 1009 1009 . . . alleles " G T"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL196395.1 samtools variation 4616 4616 . . . alleles " A G"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL196400.1 samtools variation 586 586 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL196428.1 samtools variation 619 619 . . . alleles " T C"; frequencies " 0.711111111111111 0.266666666666667"; depth 45 ; unknown ; non-synonymous GL196428.1 samtools variation 657 657 . . . alleles " T C"; frequencies " 0.565217391304348 0.434782608695652"; depth 46 ; unknown ; non-synonymous GL196428.1 samtools variation 803 803 . . . alleles " T C"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; synonymous GL196428.1 samtools variation 814 814 . . . alleles " T C"; frequencies " 0.703703703703704 0.296296296296296"; depth 27 ; unknown ; non-synonymous GL196428.1 samtools variation 849 849 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; non-synonymous GL196428.1 samtools variation 1264 1264 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; synonymous GL196428.1 samtools variation 1338 1338 . . . alleles " T C"; frequencies " 0.257142857142857 0.742857142857143"; depth 35 ; unknown ; N/A GL196428.1 samtools variation 1399 1399 . . . alleles " G A"; frequencies " 0.512820512820513 0.487179487179487"; depth 39 ; unknown ; synonymous GL196428.1 samtools variation 1463 1463 . . . alleles " G A"; frequencies " 0.685714285714286 0.314285714285714"; depth 35 ; unknown ; non-synonymous GL196428.1 samtools variation 1531 1531 . . . alleles " G A"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; synonymous GL196428.1 samtools variation 2612 2612 . . . alleles " C A"; frequencies " 0.384615384615385 0.615384615384615"; depth 39 ; unknown ; N/A GL196428.1 samtools variation 2634 2634 . . . alleles " C T"; frequencies " 0.386363636363636 0.613636363636364"; depth 44 ; unknown ; N/A GL196428.1 samtools variation 3007 3007 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL196428.1 samtools variation 3008 3008 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL196428.1 samtools variation 3438 3438 . . . alleles " C G"; frequencies " 0.684210526315789 0.315789473684211"; depth 57 ; unknown ; N/A GL196428.1 samtools variation 3490 3490 . . . alleles " T C"; frequencies " 0.585365853658537 0.414634146341463"; depth 82 ; unknown ; N/A GL196428.1 samtools variation 3502 3502 . . . alleles " C T"; frequencies " 0.670588235294118 0.329411764705882"; depth 85 ; unknown ; N/A GL196428.1 samtools variation 6644 6644 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL196444.1 samtools variation 4883 4883 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 14 ; known ; N/A GL196458.1 samtools variation 3716 3716 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL196458.1 samtools variation 5992 5992 . . . alleles " C G"; frequencies " 0.664335664335664 0.335664335664336"; depth 286 ; known ; non-synonymous GL196458.1 samtools variation 6014 6014 . . . alleles " A G"; frequencies " 0.693693693693694 0.303303303303303"; depth 333 ; unknown ; synonymous GL196458.1 samtools variation 6307 6307 . . . alleles " C G"; frequencies " 0.584397163120567 0.415602836879433"; depth 705 ; unknown ; non-synonymous GL196458.1 samtools variation 6329 6329 . . . alleles " G A"; frequencies " 0.742481203007519 0.257518796992481"; depth 532 ; unknown ; synonymous GL196462.1 samtools variation 998 998 . . . alleles " C T"; frequencies " 0.678571428571429 0.321428571428571"; depth 56 ; unknown ; N/A GL196462.1 samtools variation 1136 1136 . . . alleles " G A"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL196466.1 samtools variation 5648 5648 . . . alleles " A G"; frequencies " 0.3 0.7"; depth 10 ; known ; N/A GL196478.1 samtools variation 1152 1152 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL196478.1 samtools variation 1166 1166 . . . alleles " C A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL196480.1 samtools variation 453 453 . . . alleles " G A"; frequencies " 0.232558139534884 0.767441860465116"; depth 43 ; unknown ; N/A GL196480.1 samtools variation 504 504 . . . alleles " A G"; frequencies " 0.2 0.8"; depth 45 ; unknown ; N/A GL196480.1 samtools variation 1493 1493 . . . alleles " C T"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; N/A GL196480.1 samtools variation 1497 1497 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 30 ; unknown ; N/A GL196480.1 samtools variation 4097 4097 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL196480.1 samtools variation 5653 5653 . . . alleles " T C"; frequencies " 0.251798561151079 0.748201438848921"; depth 139 ; unknown ; N/A GL196517.1 samtools variation 495 495 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; known ; N/A GL196517.1 samtools variation 607 607 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; known ; N/A GL196517.1 samtools variation 830 830 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL196536.1 samtools variation 1691 1691 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL196536.1 samtools variation 3512 3512 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL196536.1 samtools variation 3707 3707 . . . alleles " G C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; known ; N/A GL196536.1 samtools variation 3987 3987 . . . alleles " G T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL196536.1 samtools variation 4737 4737 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL196536.1 samtools variation 4787 4787 . . . alleles " T C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL196537.1 samtools variation 2253 2253 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL196537.1 samtools variation 2504 2504 . . . alleles " T G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL196537.1 samtools variation 2857 2857 . . . alleles " G C"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL196537.1 samtools variation 3066 3066 . . . alleles " G A"; frequencies " 0.72972972972973 0.27027027027027"; depth 37 ; unknown ; N/A GL196537.1 samtools variation 4034 4034 . . . alleles " G C"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL196537.1 samtools variation 4127 4127 . . . alleles " C T"; frequencies " 0.439024390243902 0.560975609756098"; depth 41 ; unknown ; N/A GL196537.1 samtools variation 4196 4196 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL196537.1 samtools variation 4359 4359 . . . alleles " C G"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL196537.1 samtools variation 4401 4401 . . . alleles " C G"; frequencies " 0.69047619047619 0.30952380952381"; depth 42 ; unknown ; N/A GL196537.1 samtools variation 4487 4487 . . . alleles " C T"; frequencies " 0.275862068965517 0.724137931034483"; depth 29 ; unknown ; N/A GL196537.1 samtools variation 4551 4551 . . . alleles " G C"; frequencies " 0.307692307692308 0.653846153846154"; depth 52 ; unknown ; N/A GL196537.1 samtools variation 5590 5590 . . . alleles " T A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL196544.1 samtools variation 3552 3552 . . . alleles " T G"; frequencies " 0.690909090909091 0.309090909090909"; depth 55 ; known ; N/A GL196545.1 samtools variation 695 695 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; known ; N/A GL196562.1 samtools variation 725 725 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL196562.1 samtools variation 732 732 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL196562.1 samtools variation 1494 1494 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL196562.1 samtools variation 2330 2330 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL196562.1 samtools variation 2370 2370 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL196562.1 samtools variation 2759 2759 . . . alleles " A C"; frequencies " 0.466666666666667 0.466666666666667"; depth 15 ; unknown ; N/A GL196562.1 samtools variation 2929 2929 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL196562.1 samtools variation 2930 2930 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL196562.1 samtools variation 2966 2966 . . . alleles " G C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL196562.1 samtools variation 4477 4477 . . . alleles " C A"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL196562.1 samtools variation 4483 4483 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 30 ; unknown ; N/A GL196562.1 samtools variation 5501 5501 . . . alleles " G A"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL196576.1 samtools variation 2358 2358 . . . alleles " G A"; frequencies " 0.783783783783784 0.216216216216216"; depth 37 ; unknown ; N/A GL196576.1 samtools variation 2371 2371 . . . alleles " C T"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL196576.1 samtools variation 2512 2512 . . . alleles " G T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL196576.1 samtools variation 2600 2600 . . . alleles " T C"; frequencies " 0.787234042553192 0.212765957446809"; depth 47 ; known ; N/A GL196576.1 samtools variation 2953 2953 . . . alleles " A G"; frequencies " 0.710526315789474 0.289473684210526"; depth 38 ; unknown ; N/A GL196586.1 samtools variation 1624 1624 . . . alleles " C G"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL196599.1 samtools variation 3256 3256 . . . alleles " C T"; frequencies " 0.740740740740741 0.259259259259259"; depth 54 ; unknown ; N/A GL196599.1 samtools variation 3296 3296 . . . alleles " C T"; frequencies " 0.390243902439024 0.609756097560976"; depth 41 ; unknown ; N/A GL196601.1 samtools variation 1098 1098 . . . alleles " C A"; frequencies " 0.697478991596639 0.302521008403361"; depth 119 ; unknown ; N/A GL196601.1 samtools variation 1695 1695 . . . alleles " T G"; frequencies " 0.535714285714286 0.464285714285714"; depth 28 ; unknown ; N/A GL196601.1 samtools variation 1730 1730 . . . alleles " G A"; frequencies " 0.241379310344828 0.758620689655172"; depth 29 ; unknown ; N/A GL196601.1 samtools variation 2261 2261 . . . alleles " T C"; frequencies " 0.243243243243243 0.756756756756757"; depth 37 ; unknown ; N/A GL196601.1 samtools variation 2437 2437 . . . alleles " T A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL196601.1 samtools variation 2886 2886 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL196601.1 samtools variation 2895 2895 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL196601.1 samtools variation 2913 2913 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL196601.1 samtools variation 2928 2928 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL196601.1 samtools variation 2964 2964 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL196601.1 samtools variation 3009 3009 . . . alleles " A G"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL196601.1 samtools variation 3056 3056 . . . alleles " T A"; frequencies " 0.4375 0.5625"; depth 16 ; unknown ; N/A GL196601.1 samtools variation 3602 3602 . . . alleles " C T"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; N/A GL196601.1 samtools variation 3606 3606 . . . alleles " C T"; frequencies " 0.788461538461538 0.211538461538462"; depth 52 ; unknown ; N/A GL196610.1 samtools variation 3436 3436 . . . alleles " G T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL196636.1 samtools variation 4725 4725 . . . alleles " A G"; frequencies " 0.366666666666667 0.633333333333333"; depth 60 ; known ; N/A GL196636.1 samtools variation 4818 4818 . . . alleles " T C"; frequencies " 0.696629213483146 0.303370786516854"; depth 89 ; unknown ; N/A GL196636.1 samtools variation 4927 4927 . . . alleles " T C"; frequencies " 0.431034482758621 0.568965517241379"; depth 58 ; unknown ; N/A GL196636.1 samtools variation 4928 4928 . . . alleles " G T"; frequencies " 0.484375 0.515625"; depth 64 ; unknown ; N/A GL196636.1 samtools variation 4954 4954 . . . alleles " G C"; frequencies " 0.676056338028169 0.323943661971831"; depth 71 ; unknown ; N/A GL196636.1 samtools variation 5032 5032 . . . alleles " T G"; frequencies " 0.576923076923077 0.423076923076923"; depth 52 ; unknown ; N/A GL196636.1 samtools variation 5115 5115 . . . alleles " G C"; frequencies " 0.484848484848485 0.5"; depth 66 ; unknown ; N/A GL196636.1 samtools variation 5126 5126 . . . alleles " G C"; frequencies " 0.553846153846154 0.446153846153846"; depth 65 ; unknown ; N/A GL196636.1 samtools variation 5140 5140 . . . alleles " C A"; frequencies " 0.553571428571429 0.446428571428571"; depth 56 ; known ; N/A GL196636.1 samtools variation 5209 5209 . . . alleles " G T"; frequencies " 0.590163934426229 0.409836065573771"; depth 61 ; known ; N/A GL196648.1 samtools variation 617 617 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; synonymous GL196657.1 samtools variation 932 932 . . . alleles " A G"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL196657.1 samtools variation 933 933 . . . alleles " A G"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL196657.1 samtools variation 1664 1664 . . . alleles " G A"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; unknown ; N/A GL196667.1 samtools variation 1414 1414 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL196667.1 samtools variation 1416 1416 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 26 ; unknown ; N/A GL196667.1 samtools variation 3050 3050 . . . alleles " G A"; frequencies " 0.585106382978723 0.414893617021277"; depth 94 ; known ; N/A GL196703.1 samtools variation 3605 3605 . . . alleles " A G"; frequencies " 0.530973451327434 0.469026548672566"; depth 113 ; known ; N/A GL196703.1 samtools variation 3637 3637 . . . alleles " G A"; frequencies " 0.489655172413793 0.510344827586207"; depth 145 ; unknown ; N/A GL196721.1 samtools variation 3282 3282 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL196721.1 samtools variation 3911 3911 . . . alleles " A G"; frequencies " 0.78125 0.21875"; depth 64 ; unknown ; N/A GL196721.1 samtools variation 3931 3931 . . . alleles " G A"; frequencies " 0.673076923076923 0.326923076923077"; depth 52 ; unknown ; N/A GL196726.1 samtools variation 226 226 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL196750.1 samtools variation 3027 3027 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL196750.1 samtools variation 3120 3120 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL196750.1 samtools variation 3981 3981 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL196815.1 samtools variation 3586 3586 . . . alleles " A C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL196821.1 samtools variation 3432 3432 . . . alleles " G A"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; non-synonymous GL196821.1 samtools variation 3820 3820 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; non-synonymous GL196821.1 samtools variation 3825 3825 . . . alleles " T C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; synonymous GL196824.1 samtools variation 1597 1597 . . . alleles " C T"; frequencies " 0.566265060240964 0.433734939759036"; depth 83 ; unknown ; N/A GL196824.1 samtools variation 2190 2190 . . . alleles " T C"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL196824.1 samtools variation 2325 2325 . . . alleles " G C"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL196827.1 samtools variation 3050 3050 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL196836.1 samtools variation 3972 3972 . . . alleles " A C"; frequencies " 0.761904761904762 0.238095238095238"; depth 63 ; known ; N/A GL196849.1 samtools variation 1665 1665 . . . alleles " C T"; frequencies " 0.661764705882353 0.338235294117647"; depth 68 ; unknown ; N/A GL196857.1 samtools variation 1859 1859 . . . alleles " T C"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; known ; N/A GL196871.1 samtools variation 842 842 . . . alleles " A C"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL196871.1 samtools variation 927 927 . . . alleles " C A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL196871.1 samtools variation 3460 3460 . . . alleles " C T"; frequencies " 0.590909090909091 0.409090909090909"; depth 44 ; unknown ; N/A GL196871.1 samtools variation 3649 3649 . . . alleles " G A"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; N/A GL196871.1 samtools variation 3892 3892 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL196903.1 samtools variation 1030 1030 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL196903.1 samtools variation 3756 3756 . . . alleles " C T"; frequencies " 0.575757575757576 0.424242424242424"; depth 33 ; unknown ; N/A GL196903.1 samtools variation 3794 3794 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL196920.1 samtools variation 1344 1344 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL196920.1 samtools variation 1348 1348 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL196920.1 samtools variation 3709 3709 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL196920.1 samtools variation 3721 3721 . . . alleles " C T"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL196951.1 samtools variation 612 612 . . . alleles " G A"; frequencies " 0.766233766233766 0.233766233766234"; depth 77 ; unknown ; N/A GL196951.1 samtools variation 737 737 . . . alleles " A C"; frequencies " 0.310975609756098 0.609756097560976"; depth 164 ; unknown ; N/A GL196951.1 samtools variation 1145 1145 . . . alleles " A G"; frequencies " 0.679558011049724 0.320441988950276"; depth 181 ; unknown ; N/A GL196951.1 samtools variation 1150 1150 . . . alleles " T A"; frequencies " 0.664772727272727 0.335227272727273"; depth 176 ; unknown ; N/A GL196951.1 samtools variation 1215 1215 . . . alleles " A G"; frequencies " 0.786694825765575 0.213305174234424"; depth 947 ; unknown ; N/A GL196951.1 samtools variation 1216 1216 . . . alleles " C T"; frequencies " 0.787845303867403 0.212154696132597"; depth 905 ; unknown ; N/A GL196951.1 samtools variation 1441 1441 . . . alleles " T C"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL196951.1 samtools variation 2165 2165 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; unknown ; N/A GL196951.1 samtools variation 2219 2219 . . . alleles " G A"; frequencies " 0.657620041753653 0.342379958246347"; depth 958 ; unknown ; N/A GL196962.1 samtools variation 1917 1917 . . . alleles " G A"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL196962.1 samtools variation 1993 1993 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 26 ; unknown ; N/A GL196962.1 samtools variation 2248 2248 . . . alleles " A G"; frequencies " 0.531914893617021 0.468085106382979"; depth 47 ; unknown ; N/A GL196962.1 samtools variation 2580 2580 . . . alleles " C T"; frequencies " 0.448717948717949 0.551282051282051"; depth 78 ; known ; N/A GL196962.1 samtools variation 3031 3031 . . . alleles " C T"; frequencies " 0.783018867924528 0.216981132075472"; depth 106 ; unknown ; N/A GL196962.1 samtools variation 3129 3129 . . . alleles " G A"; frequencies " 0.78125 0.21875"; depth 128 ; unknown ; N/A GL196962.1 samtools variation 3134 3134 . . . alleles " T G"; frequencies " 0.626984126984127 0.373015873015873"; depth 126 ; unknown ; N/A GL196962.1 samtools variation 3223 3223 . . . alleles " C T"; frequencies " 0.787610619469027 0.212389380530973"; depth 113 ; unknown ; N/A GL196962.1 samtools variation 3308 3308 . . . alleles " T C"; frequencies " 0.796610169491525 0.203389830508475"; depth 118 ; unknown ; N/A GL196962.1 samtools variation 3480 3480 . . . alleles " G A"; frequencies " 0.784810126582278 0.215189873417722"; depth 79 ; unknown ; N/A GL196983.1 samtools variation 3228 3228 . . . alleles " C T"; frequencies " 0.654761904761905 0.345238095238095"; depth 84 ; unknown ; N/A GL196983.1 samtools variation 3266 3266 . . . alleles " T G"; frequencies " 0.635514018691589 0.364485981308411"; depth 107 ; unknown ; N/A GL197061.1 samtools variation 998 998 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 42 ; unknown ; N/A GL197061.1 samtools variation 1011 1011 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 45 ; unknown ; N/A GL197061.1 samtools variation 1257 1257 . . . alleles " G C"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; known ; N/A GL197066.1 samtools variation 1556 1556 . . . alleles " C T"; frequencies " 0.702702702702703 0.243243243243243"; depth 37 ; unknown ; synonymous GL197072.1 samtools variation 2360 2360 . . . alleles " T C"; frequencies " 0.227272727272727 0.772727272727273"; depth 22 ; unknown ; N/A GL197072.1 samtools variation 2421 2421 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL197095.1 samtools variation 949 949 . . . alleles " A C"; frequencies " 0.214285714285714 0.785714285714286"; depth 14 ; known ; N/A GL197111.1 samtools variation 380 380 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL197111.1 samtools variation 442 442 . . . alleles " C G"; frequencies " 0.416666666666667 0.416666666666667"; depth 12 ; unknown ; N/A GL197111.1 samtools variation 736 736 . . . alleles " C G"; frequencies " 0.571428571428571 0.428571428571429"; depth 21 ; unknown ; N/A GL197111.1 samtools variation 1082 1082 . . . alleles " A C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL197117.1 samtools variation 437 437 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL197123.1 samtools variation 880 880 . . . alleles " C T"; frequencies " 0.241379310344828 0.758620689655172"; depth 29 ; known ; N/A GL197123.1 samtools variation 1097 1097 . . . alleles " T C"; frequencies " 0.753623188405797 0.246376811594203"; depth 138 ; known ; N/A GL197123.1 samtools variation 1350 1350 . . . alleles " C T"; frequencies " 0.36 0.64"; depth 200 ; known ; N/A GL197123.1 samtools variation 1427 1427 . . . alleles " G A"; frequencies " 0.203645505971087 0.796354494028913"; depth 1591 ; unknown ; N/A GL197123.1 samtools variation 1588 1588 . . . alleles " A G"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; known ; N/A GL197123.1 samtools variation 2127 2127 . . . alleles " C T"; frequencies " 0.614800759013283 0.385199240986717"; depth 527 ; unknown ; N/A GL197125.1 samtools variation 1336 1336 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL197144.1 samtools variation 2221 2221 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL197183.1 samtools variation 1605 1605 . . . alleles " G C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL197185.1 samtools variation 556 556 . . . alleles " A T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL197194.1 samtools variation 2826 2826 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; known ; N/A GL197194.1 samtools variation 2857 2857 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; known ; N/A GL197203.1 samtools variation 927 927 . . . alleles " T C"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL197203.1 samtools variation 1089 1089 . . . alleles " G A"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL197203.1 samtools variation 2446 2446 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL197211.1 samtools variation 187 187 . . . alleles " C T"; frequencies " 0.71875 0.28125"; depth 64 ; unknown ; N/A GL197211.1 samtools variation 216 216 . . . alleles " G T"; frequencies " 0.674698795180723 0.325301204819277"; depth 83 ; unknown ; N/A GL197211.1 samtools variation 1947 1947 . . . alleles " C T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL197237.1 samtools variation 1041 1041 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL197237.1 samtools variation 1159 1159 . . . alleles " T A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL197237.1 samtools variation 1217 1217 . . . alleles " G A"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL197237.1 samtools variation 1339 1339 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL197237.1 samtools variation 1659 1659 . . . alleles " C A"; frequencies " 0.473118279569892 0.526881720430108"; depth 93 ; unknown ; N/A GL197237.1 samtools variation 1679 1679 . . . alleles " G A"; frequencies " 0.212121212121212 0.787878787878788"; depth 99 ; unknown ; N/A GL197237.1 samtools variation 1771 1771 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 76 ; unknown ; N/A GL197237.1 samtools variation 1772 1772 . . . alleles " C T"; frequencies " 0.776315789473684 0.223684210526316"; depth 76 ; unknown ; N/A GL197242.1 samtools variation 570 570 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; known ; N/A GL197242.1 samtools variation 2047 2047 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL197272.1 samtools variation 2568 2568 . . . alleles " A G"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL197277.1 samtools variation 1018 1018 . . . alleles " G A"; frequencies " 0.304721030042918 0.695278969957081"; depth 233 ; unknown ; N/A GL197277.1 samtools variation 1475 1475 . . . alleles " C A"; frequencies " 0.205128205128205 0.794871794871795"; depth 312 ; unknown ; N/A GL197298.1 samtools variation 667 667 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL197340.1 samtools variation 2026 2026 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL197354.1 samtools variation 302 302 . . . alleles " A G"; frequencies " 0.287878787878788 0.712121212121212"; depth 66 ; known ; N/A GL197372.1 samtools variation 83 83 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL197372.1 samtools variation 117 117 . . . alleles " C T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL197373.1 samtools variation 1974 1974 . . . alleles " G A"; frequencies " 0.758026159334126 0.241973840665874"; depth 1682 ; unknown ; N/A GL197421.1 samtools variation 691 691 . . . alleles " T C"; frequencies " 0.257575757575758 0.742424242424242"; depth 66 ; unknown ; N/A GL197421.1 samtools variation 696 696 . . . alleles " A G"; frequencies " 0.301587301587302 0.698412698412698"; depth 63 ; unknown ; N/A GL197431.1 samtools variation 2174 2174 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL197510.1 samtools variation 474 474 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL197510.1 samtools variation 1056 1056 . . . alleles " G A"; frequencies " 0.695652173913043 0.239130434782609"; depth 46 ; unknown ; N/A GL197510.1 samtools variation 1177 1177 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL197510.1 samtools variation 1184 1184 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL197510.1 samtools variation 1594 1594 . . . alleles " C T"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL197510.1 samtools variation 1621 1621 . . . alleles " G T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL197510.1 samtools variation 1659 1659 . . . alleles " A T"; frequencies " 0.689655172413793 0.310344827586207"; depth 29 ; unknown ; N/A GL197510.1 samtools variation 1692 1692 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL197510.1 samtools variation 1697 1697 . . . alleles " C A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL197510.1 samtools variation 1804 1804 . . . alleles " T A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL197510.1 samtools variation 2012 2012 . . . alleles " G T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL197535.1 samtools variation 1471 1471 . . . alleles " A G"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL197569.1 samtools variation 381 381 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 91 ; unknown ; N/A GL197569.1 samtools variation 450 450 . . . alleles " G T"; frequencies " 0.66304347826087 0.33695652173913"; depth 92 ; unknown ; N/A GL197569.1 samtools variation 453 453 . . . alleles " A G"; frequencies " 0.647727272727273 0.352272727272727"; depth 88 ; unknown ; N/A GL197569.1 samtools variation 536 536 . . . alleles " C G"; frequencies " 0.297297297297297 0.702702702702703"; depth 111 ; unknown ; N/A GL197569.1 samtools variation 1483 1483 . . . alleles " T C"; frequencies " 0.71875 0.28125"; depth 128 ; unknown ; N/A GL197598.1 samtools variation 1335 1335 . . . alleles " C G"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; known ; N/A GL197627.1 samtools variation 1781 1781 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL197627.1 samtools variation 1837 1837 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL197628.1 samtools variation 186 186 . . . alleles " C T"; frequencies " 0.371428571428571 0.628571428571429"; depth 35 ; unknown ; N/A GL197628.1 samtools variation 191 191 . . . alleles " A G"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL197628.1 samtools variation 242 242 . . . alleles " C T"; frequencies " 0.405405405405405 0.594594594594595"; depth 37 ; unknown ; N/A GL197628.1 samtools variation 272 272 . . . alleles " A C"; frequencies " 0.608695652173913 0.391304347826087"; depth 46 ; unknown ; N/A GL197628.1 samtools variation 771 771 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL197628.1 samtools variation 1167 1167 . . . alleles " G A"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL197628.1 samtools variation 1603 1603 . . . alleles " T G"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL197639.1 samtools variation 971 971 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL197647.1 samtools variation 1132 1132 . . . alleles " A C"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL197683.1 samtools variation 461 461 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 52 ; unknown ; N/A GL197685.1 samtools variation 344 344 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 20 ; unknown ; N/A GL197685.1 samtools variation 643 643 . . . alleles " C T"; frequencies " 0.783333333333333 0.216666666666667"; depth 60 ; unknown ; N/A GL197685.1 samtools variation 1119 1119 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL197685.1 samtools variation 1346 1346 . . . alleles " G A"; frequencies " 0.703703703703704 0.296296296296296"; depth 81 ; unknown ; N/A GL197744.1 samtools variation 1445 1445 . . . alleles " G A"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL197748.1 samtools variation 803 803 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL197768.1 samtools variation 447 447 . . . alleles " G A"; frequencies " 0.673469387755102 0.326530612244898"; depth 49 ; unknown ; N/A GL197768.1 samtools variation 727 727 . . . alleles " G A"; frequencies " 0.578947368421053 0.421052631578947"; depth 57 ; unknown ; N/A GL197799.1 samtools variation 639 639 . . . alleles " C T"; frequencies " 0.69811320754717 0.30188679245283"; depth 159 ; unknown ; N/A GL197799.1 samtools variation 813 813 . . . alleles " C T"; frequencies " 0.771428571428571 0.228571428571429"; depth 35 ; unknown ; N/A GL197799.1 samtools variation 1277 1277 . . . alleles " C G"; frequencies " 0.495049504950495 0.504950495049505"; depth 101 ; unknown ; N/A GL197799.1 samtools variation 1585 1585 . . . alleles " A T"; frequencies " 0.753968253968254 0.246031746031746"; depth 126 ; unknown ; N/A GL197858.1 samtools variation 1117 1117 . . . alleles " G T"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL197858.1 samtools variation 1209 1209 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL197875.1 samtools variation 376 376 . . . alleles " A C"; frequencies " 0.727272727272727 0.227272727272727"; depth 22 ; unknown ; N/A GL197875.1 samtools variation 515 515 . . . alleles " A C"; frequencies " 0.763975155279503 0.236024844720497"; depth 161 ; unknown ; N/A GL197875.1 samtools variation 562 562 . . . alleles " A G"; frequencies " 0.620915032679739 0.379084967320261"; depth 153 ; unknown ; N/A GL197875.1 samtools variation 674 674 . . . alleles " G T"; frequencies " 0.726190476190476 0.273809523809524"; depth 84 ; unknown ; N/A GL197875.1 samtools variation 831 831 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 39 ; unknown ; N/A GL197875.1 samtools variation 1009 1009 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL197875.1 samtools variation 1383 1383 . . . alleles " T G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL197899.1 samtools variation 1399 1399 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; non-synonymous GL197941.1 samtools variation 907 907 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL197941.1 samtools variation 1525 1525 . . . alleles " G C"; frequencies " 0.789473684210526 0.210526315789474"; depth 38 ; unknown ; N/A GL197941.1 samtools variation 1557 1557 . . . alleles " G A"; frequencies " 0.425925925925926 0.574074074074074"; depth 54 ; unknown ; N/A GL197966.1 samtools variation 599 599 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL197966.1 samtools variation 601 601 . . . alleles " A T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL197966.1 samtools variation 795 795 . . . alleles " A C"; frequencies " 0.346153846153846 0.653846153846154"; depth 52 ; unknown ; N/A GL197966.1 samtools variation 834 834 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 66 ; unknown ; N/A GL197966.1 samtools variation 841 841 . . . alleles " A G"; frequencies " 0.775862068965517 0.224137931034483"; depth 58 ; unknown ; N/A GL197966.1 samtools variation 892 892 . . . alleles " C T"; frequencies " 0.357142857142857 0.642857142857143"; depth 28 ; unknown ; N/A GL197966.1 samtools variation 893 893 . . . alleles " A G"; frequencies " 0.214285714285714 0.785714285714286"; depth 28 ; unknown ; N/A GL197966.1 samtools variation 932 932 . . . alleles " C T"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL197966.1 samtools variation 1012 1012 . . . alleles " G A"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL197966.1 samtools variation 1059 1059 . . . alleles " T A"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL197966.1 samtools variation 1251 1251 . . . alleles " A G"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL197966.1 samtools variation 1265 1265 . . . alleles " A T"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL197989.1 samtools variation 932 932 . . . alleles " A G"; frequencies " 0.204545454545455 0.795454545454545"; depth 44 ; known ; N/A GL198031.1 samtools variation 740 740 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL198031.1 samtools variation 807 807 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; N/A GL198031.1 samtools variation 866 866 . . . alleles " G T"; frequencies " 0.8 0.2"; depth 25 ; unknown ; N/A GL198038.1 samtools variation 525 525 . . . alleles " C A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL198038.1 samtools variation 571 571 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL198041.1 samtools variation 669 669 . . . alleles " A G"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL198041.1 samtools variation 698 698 . . . alleles " C A"; frequencies " 0.384615384615385 0.538461538461538"; depth 13 ; unknown ; N/A GL198041.1 samtools variation 828 828 . . . alleles " C T"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL198041.1 samtools variation 845 845 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL198041.1 samtools variation 913 913 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL198041.1 samtools variation 922 922 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL198041.1 samtools variation 950 950 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL198059.1 samtools variation 1058 1058 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL198064.1 samtools variation 704 704 . . . alleles " A G"; frequencies " 0.65625 0.34375"; depth 32 ; unknown ; N/A GL198089.1 samtools variation 346 346 . . . alleles " A G"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL198089.1 samtools variation 805 805 . . . alleles " C T"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL198089.1 samtools variation 944 944 . . . alleles " G T"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL198093.1 samtools variation 96 96 . . . alleles " G A"; frequencies " 0.225490196078431 0.774509803921569"; depth 102 ; known ; N/A GL198093.1 samtools variation 170 170 . . . alleles " C T"; frequencies " 0.21656050955414 0.78343949044586"; depth 157 ; unknown ; N/A GL198093.1 samtools variation 411 411 . . . alleles " A C"; frequencies " 0.760416666666667 0.239583333333333"; depth 192 ; unknown ; N/A GL198093.1 samtools variation 611 611 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 135 ; unknown ; N/A GL198093.1 samtools variation 664 664 . . . alleles " A G"; frequencies " 0.390041493775934 0.609958506224066"; depth 241 ; unknown ; N/A GL198093.1 samtools variation 1105 1105 . . . alleles " T C"; frequencies " 0.603174603174603 0.396825396825397"; depth 189 ; unknown ; N/A GL198093.1 samtools variation 1249 1249 . . . alleles " T C"; frequencies " 0.348837209302326 0.651162790697674"; depth 43 ; unknown ; N/A GL198093.1 samtools variation 1305 1305 . . . alleles " T C"; frequencies " 0.272727272727273 0.727272727272727"; depth 44 ; unknown ; N/A GL198123.1 samtools variation 596 596 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL198123.1 samtools variation 1087 1087 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL198141.1 samtools variation 1230 1230 . . . alleles " A G"; frequencies " 0.213815789473684 0.786184210526316"; depth 304 ; unknown ; N/A GL198161.1 samtools variation 154 154 . . . alleles " G C"; frequencies " 0.571428571428571 0.428571428571429"; depth 56 ; unknown ; N/A GL198161.1 samtools variation 199 199 . . . alleles " C T"; frequencies " 0.535211267605634 0.464788732394366"; depth 71 ; unknown ; N/A GL198161.1 samtools variation 544 544 . . . alleles " G A"; frequencies " 0.669565217391304 0.330434782608696"; depth 115 ; unknown ; N/A GL198161.1 samtools variation 568 568 . . . alleles " C T"; frequencies " 0.652892561983471 0.347107438016529"; depth 121 ; unknown ; N/A GL198161.1 samtools variation 1131 1131 . . . alleles " C T"; frequencies " 0.655172413793103 0.344827586206897"; depth 58 ; unknown ; N/A GL198161.1 samtools variation 1263 1263 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL198186.1 samtools variation 275 275 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL198186.1 samtools variation 413 413 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL198186.1 samtools variation 948 948 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 45 ; unknown ; N/A GL198186.1 samtools variation 970 970 . . . alleles " A C"; frequencies " 0.425 0.575"; depth 40 ; unknown ; N/A GL198208.1 samtools variation 639 639 . . . alleles " C T"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL198208.1 samtools variation 659 659 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL198208.1 samtools variation 701 701 . . . alleles " C T"; frequencies " 0.676470588235294 0.323529411764706"; depth 34 ; unknown ; N/A GL198208.1 samtools variation 1170 1170 . . . alleles " C G"; frequencies " 0.288461538461538 0.711538461538462"; depth 52 ; known ; N/A GL198208.1 samtools variation 1335 1335 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 180 ; unknown ; N/A GL198208.1 samtools variation 1378 1378 . . . alleles " C T"; frequencies " 0.592105263157895 0.407894736842105"; depth 76 ; unknown ; N/A GL198208.1 samtools variation 1379 1379 . . . alleles " G A"; frequencies " 0.217948717948718 0.782051282051282"; depth 78 ; unknown ; N/A GL198208.1 samtools variation 1442 1442 . . . alleles " A G"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL198208.1 samtools variation 1444 1444 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 38 ; unknown ; N/A GL198318.1 samtools variation 315 315 . . . alleles " C T"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL198318.1 samtools variation 338 338 . . . alleles " A G"; frequencies " 0.4 0.6"; depth 25 ; unknown ; N/A GL198318.1 samtools variation 525 525 . . . alleles " C G"; frequencies " 0.792207792207792 0.207792207792208"; depth 77 ; unknown ; N/A GL198320.1 samtools variation 220 220 . . . alleles " T C"; frequencies " 0.607843137254902 0.392156862745098"; depth 51 ; unknown ; N/A GL198320.1 samtools variation 305 305 . . . alleles " C G"; frequencies " 0.53125 0.46875"; depth 64 ; unknown ; N/A GL198320.1 samtools variation 334 334 . . . alleles " A G"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL198320.1 samtools variation 460 460 . . . alleles " G C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL198320.1 samtools variation 1012 1012 . . . alleles " T C"; frequencies " 0.541666666666667 0.458333333333333"; depth 24 ; unknown ; N/A GL198320.1 samtools variation 1026 1026 . . . alleles " T G"; frequencies " 0.515151515151515 0.484848484848485"; depth 33 ; unknown ; N/A GL198320.1 samtools variation 1116 1116 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 30 ; unknown ; N/A GL198340.1 samtools variation 380 380 . . . alleles " C T"; frequencies " 0.548387096774194 0.451612903225806"; depth 31 ; unknown ; N/A GL198340.1 samtools variation 642 642 . . . alleles " C G"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL198340.1 samtools variation 756 756 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 21 ; unknown ; N/A GL198366.1 samtools variation 345 345 . . . alleles " A G"; frequencies " 0.762773722627737 0.237226277372263"; depth 274 ; unknown ; N/A GL198366.1 samtools variation 1217 1217 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL198366.1 samtools variation 1220 1220 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL198366.1 samtools variation 1298 1298 . . . alleles " G A"; frequencies " 0.514285714285714 0.485714285714286"; depth 35 ; unknown ; N/A GL198427.1 samtools variation 651 651 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 44 ; unknown ; N/A GL198427.1 samtools variation 669 669 . . . alleles " A G"; frequencies " 0.729166666666667 0.270833333333333"; depth 48 ; unknown ; N/A GL198427.1 samtools variation 1206 1206 . . . alleles " A T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL198427.1 samtools variation 1207 1207 . . . alleles " C T"; frequencies " 0.666666666666667 0.222222222222222"; depth 18 ; unknown ; N/A GL198442.1 samtools variation 700 700 . . . alleles " C T"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL198459.1 samtools variation 420 420 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL198459.1 samtools variation 452 452 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL198459.1 samtools variation 515 515 . . . alleles " G C"; frequencies " 0.6875 0.25"; depth 16 ; unknown ; N/A GL198459.1 samtools variation 616 616 . . . alleles " T C"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL198535.1 samtools variation 585 585 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL198535.1 samtools variation 708 708 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL198535.1 samtools variation 710 710 . . . alleles " T C"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL198535.1 samtools variation 742 742 . . . alleles " G A"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL198563.1 samtools variation 333 333 . . . alleles " A G"; frequencies " 0.333333333333333 0.666666666666667"; depth 42 ; known ; synonymous GL198563.1 samtools variation 366 366 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 84 ; unknown ; synonymous GL198563.1 samtools variation 448 448 . . . alleles " C T"; frequencies " 0.778947368421053 0.221052631578947"; depth 95 ; unknown ; non-synonymous GL198563.1 samtools variation 465 465 . . . alleles " C T"; frequencies " 0.754545454545455 0.245454545454545"; depth 110 ; unknown ; synonymous GL198563.1 samtools variation 873 873 . . . alleles " C T"; frequencies " 0.773913043478261 0.226086956521739"; depth 115 ; unknown ; synonymous GL198607.1 samtools variation 697 697 . . . alleles " A G"; frequencies " 0.257142857142857 0.742857142857143"; depth 35 ; known ; N/A GL198628.1 samtools variation 637 637 . . . alleles " T G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL198628.1 samtools variation 713 713 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL198639.1 samtools variation 555 555 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL198677.1 samtools variation 941 941 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL198677.1 samtools variation 1022 1022 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL198736.1 samtools variation 1030 1030 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL198736.1 samtools variation 1035 1035 . . . alleles " G T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL198736.1 samtools variation 1042 1042 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL198736.1 samtools variation 1148 1148 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL198822.1 samtools variation 253 253 . . . alleles " A C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL198822.1 samtools variation 297 297 . . . alleles " T A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL198822.1 samtools variation 801 801 . . . alleles " C G"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL198826.1 samtools variation 887 887 . . . alleles " G C"; frequencies " 0.759259259259259 0.240740740740741"; depth 54 ; unknown ; N/A GL198826.1 samtools variation 1119 1119 . . . alleles " A G"; frequencies " 0.296296296296296 0.703703703703704"; depth 54 ; unknown ; N/A GL198884.1 samtools variation 215 215 . . . alleles " T C"; frequencies " 0.266666666666667 0.733333333333333"; depth 15 ; unknown ; N/A GL198884.1 samtools variation 523 523 . . . alleles " C G"; frequencies " 0.487179487179487 0.512820512820513"; depth 39 ; unknown ; N/A GL198884.1 samtools variation 715 715 . . . alleles " C T"; frequencies " 0.291666666666667 0.708333333333333"; depth 24 ; unknown ; N/A GL198884.1 samtools variation 730 730 . . . alleles " G T"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL198884.1 samtools variation 839 839 . . . alleles " G A"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL198884.1 samtools variation 1134 1134 . . . alleles " C A"; frequencies " 0.45 0.55"; depth 20 ; unknown ; N/A GL198905.1 samtools variation 777 777 . . . alleles " G A"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL198905.1 samtools variation 880 880 . . . alleles " C T"; frequencies " 0.242424242424242 0.757575757575758"; depth 33 ; unknown ; N/A GL198918.1 samtools variation 196 196 . . . alleles " C A"; frequencies " 0.60377358490566 0.39622641509434"; depth 53 ; unknown ; N/A GL198918.1 samtools variation 242 242 . . . alleles " T C"; frequencies " 0.622222222222222 0.377777777777778"; depth 45 ; unknown ; N/A GL198924.1 samtools variation 141 141 . . . alleles " C T"; frequencies " 0.2 0.8"; depth 165 ; unknown ; N/A GL198924.1 samtools variation 149 149 . . . alleles " G T"; frequencies " 0.2 0.8"; depth 160 ; unknown ; N/A GL198924.1 samtools variation 252 252 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL198924.1 samtools variation 273 273 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 32 ; unknown ; N/A GL198924.1 samtools variation 305 305 . . . alleles " C A"; frequencies " 0.529411764705882 0.470588235294118"; depth 34 ; unknown ; N/A GL198924.1 samtools variation 362 362 . . . alleles " C T"; frequencies " 0.270833333333333 0.729166666666667"; depth 48 ; unknown ; N/A GL198941.1 samtools variation 400 400 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL198954.1 samtools variation 46 46 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL198954.1 samtools variation 76 76 . . . alleles " G T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL198954.1 samtools variation 101 101 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL198954.1 samtools variation 328 328 . . . alleles " G T"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL198954.1 samtools variation 408 408 . . . alleles " G A"; frequencies " 0.37037037037037 0.62962962962963"; depth 27 ; unknown ; N/A GL198954.1 samtools variation 675 675 . . . alleles " T A"; frequencies " 0.545454545454545 0.454545454545455"; depth 66 ; unknown ; N/A GL198954.1 samtools variation 744 744 . . . alleles " G A"; frequencies " 0.394736842105263 0.605263157894737"; depth 76 ; unknown ; N/A GL198954.1 samtools variation 916 916 . . . alleles " A T"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL198954.1 samtools variation 923 923 . . . alleles " G A"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL198954.1 samtools variation 1033 1033 . . . alleles " T C"; frequencies " 0.304347826086957 0.695652173913043"; depth 23 ; unknown ; N/A GL198954.1 samtools variation 1050 1050 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL199082.1 samtools variation 552 552 . . . alleles " T C"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL199082.1 samtools variation 553 553 . . . alleles " G T"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL199089.1 samtools variation 85 85 . . . alleles " A C"; frequencies " 0.705882352941177 0.294117647058824"; depth 51 ; unknown ; N/A GL199089.1 samtools variation 293 293 . . . alleles " G A"; frequencies " 0.562130177514793 0.437869822485207"; depth 169 ; unknown ; N/A GL199089.1 samtools variation 405 405 . . . alleles " C G"; frequencies " 0.707317073170732 0.292682926829268"; depth 41 ; unknown ; N/A GL199089.1 samtools variation 649 649 . . . alleles " A C"; frequencies " 0.58252427184466 0.41747572815534"; depth 206 ; unknown ; N/A GL199089.1 samtools variation 870 870 . . . alleles " A C"; frequencies " 0.384615384615385 0.615384615384615"; depth 91 ; unknown ; N/A GL199174.1 samtools variation 936 936 . . . alleles " T A"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL199181.1 samtools variation 224 224 . . . alleles " C T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; known ; N/A GL199205.1 samtools variation 715 715 . . . alleles " A G"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL199205.1 samtools variation 891 891 . . . alleles " C G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL199205.1 samtools variation 892 892 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL199246.1 samtools variation 546 546 . . . alleles " G A"; frequencies " 0.55829596412556 0.441704035874439"; depth 446 ; unknown ; N/A GL199246.1 samtools variation 680 680 . . . alleles " A G"; frequencies " 0.489583333333333 0.510416666666667"; depth 288 ; unknown ; N/A GL199246.1 samtools variation 695 695 . . . alleles " G C"; frequencies " 0.548387096774194 0.451612903225806"; depth 279 ; unknown ; N/A GL199246.1 samtools variation 752 752 . . . alleles " G A"; frequencies " 0.730769230769231 0.266483516483516"; depth 364 ; unknown ; N/A GL199265.1 samtools variation 879 879 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL199284.1 samtools variation 644 644 . . . alleles " G A"; frequencies " 0.733333333333333 0.266666666666667"; depth 45 ; unknown ; N/A GL199284.1 samtools variation 742 742 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 36 ; unknown ; N/A GL199284.1 samtools variation 785 785 . . . alleles " G A"; frequencies " 0.777777777777778 0.222222222222222"; depth 36 ; unknown ; N/A GL199284.1 samtools variation 917 917 . . . alleles " T C"; frequencies " 0.71875 0.28125"; depth 32 ; known ; N/A GL199284.1 samtools variation 986 986 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL199413.1 samtools variation 295 295 . . . alleles " T A"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL199420.1 samtools variation 122 122 . . . alleles " G A"; frequencies " 0.583333333333333 0.333333333333333"; depth 12 ; unknown ; N/A GL199431.1 samtools variation 205 205 . . . alleles " C T"; frequencies " 0.403225806451613 0.596774193548387"; depth 62 ; unknown ; N/A GL199431.1 samtools variation 219 219 . . . alleles " C T"; frequencies " 0.328767123287671 0.671232876712329"; depth 73 ; unknown ; N/A GL199481.1 samtools variation 600 600 . . . alleles " G T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL199499.1 samtools variation 346 346 . . . alleles " A G"; frequencies " 0.627906976744186 0.372093023255814"; depth 172 ; unknown ; N/A GL199499.1 samtools variation 506 506 . . . alleles " A G"; frequencies " 0.637362637362637 0.362637362637363"; depth 91 ; unknown ; N/A GL199499.1 samtools variation 585 585 . . . alleles " T C"; frequencies " 0.586206896551724 0.413793103448276"; depth 58 ; unknown ; N/A GL199554.1 samtools variation 993 993 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL199570.1 samtools variation 34 34 . . . alleles " A G"; frequencies " 0.576923076923077 0.423076923076923"; depth 52 ; unknown ; N/A GL199570.1 samtools variation 601 601 . . . alleles " G A"; frequencies " 0.62962962962963 0.37037037037037"; depth 108 ; unknown ; N/A GL199570.1 samtools variation 607 607 . . . alleles " T C"; frequencies " 0.780952380952381 0.219047619047619"; depth 105 ; unknown ; N/A GL199570.1 samtools variation 806 806 . . . alleles " C T"; frequencies " 0.659192825112108 0.340807174887892"; depth 223 ; unknown ; N/A GL199570.1 samtools variation 911 911 . . . alleles " T C"; frequencies " 0.622222222222222 0.377777777777778"; depth 90 ; unknown ; N/A GL199570.1 samtools variation 1009 1009 . . . alleles " C T"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; known ; N/A GL199578.1 samtools variation 341 341 . . . alleles " A G"; frequencies " 0.384615384615385 0.615384615384615"; depth 13 ; unknown ; N/A GL199585.1 samtools variation 697 697 . . . alleles " A T"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; unknown ; N/A GL199585.1 samtools variation 787 787 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL199631.1 samtools variation 142 142 . . . alleles " A T"; frequencies " 0.2375 0.7625"; depth 80 ; unknown ; N/A GL199631.1 samtools variation 454 454 . . . alleles " C A"; frequencies " 0.222972972972973 0.777027027027027"; depth 148 ; unknown ; N/A GL199643.1 samtools variation 281 281 . . . alleles " C G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL199669.1 samtools variation 182 182 . . . alleles " G A"; frequencies " 0.285714285714286 0.714285714285714"; depth 56 ; unknown ; N/A GL199669.1 samtools variation 227 227 . . . alleles " G A"; frequencies " 0.741379310344828 0.258620689655172"; depth 58 ; unknown ; N/A GL199669.1 samtools variation 244 244 . . . alleles " C G"; frequencies " 0.355555555555556 0.644444444444444"; depth 45 ; unknown ; N/A GL199669.1 samtools variation 306 306 . . . alleles " G A"; frequencies " 0.351063829787234 0.638297872340426"; depth 94 ; unknown ; N/A GL199669.1 samtools variation 408 408 . . . alleles " T A"; frequencies " 0.761061946902655 0.238938053097345"; depth 113 ; unknown ; N/A GL199722.1 samtools variation 188 188 . . . alleles " C T"; frequencies " 0.685714285714286 0.314285714285714"; depth 70 ; unknown ; N/A GL199722.1 samtools variation 224 224 . . . alleles " T C"; frequencies " 0.472361809045226 0.527638190954774"; depth 398 ; unknown ; N/A GL199722.1 samtools variation 462 462 . . . alleles " G C"; frequencies " 0.676363636363636 0.323636363636364"; depth 550 ; unknown ; N/A GL199722.1 samtools variation 471 471 . . . alleles " G C"; frequencies " 0.667917448405253 0.332082551594747"; depth 533 ; unknown ; N/A GL199722.1 samtools variation 533 533 . . . alleles " A C"; frequencies " 0.211864406779661 0.788135593220339"; depth 118 ; unknown ; N/A GL199722.1 samtools variation 575 575 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL199723.1 samtools variation 92 92 . . . alleles " G C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL199723.1 samtools variation 196 196 . . . alleles " C T"; frequencies " 0.6875 0.3125"; depth 32 ; unknown ; N/A GL199723.1 samtools variation 200 200 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 32 ; unknown ; N/A GL199723.1 samtools variation 547 547 . . . alleles " G C"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL199723.1 samtools variation 811 811 . . . alleles " G T"; frequencies " 0.682926829268293 0.317073170731707"; depth 41 ; unknown ; N/A GL199723.1 samtools variation 877 877 . . . alleles " C T"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL199740.1 samtools variation 828 828 . . . alleles " G T"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL199779.1 samtools variation 150 150 . . . alleles " C G"; frequencies " 0.423076923076923 0.576923076923077"; depth 26 ; unknown ; N/A GL199779.1 samtools variation 167 167 . . . alleles " T C"; frequencies " 0.238095238095238 0.761904761904762"; depth 42 ; unknown ; N/A GL199779.1 samtools variation 226 226 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 76 ; unknown ; N/A GL199779.1 samtools variation 658 658 . . . alleles " C T"; frequencies " 0.632183908045977 0.367816091954023"; depth 87 ; unknown ; N/A GL199779.1 samtools variation 662 662 . . . alleles " A G"; frequencies " 0.770114942528736 0.229885057471264"; depth 87 ; unknown ; N/A GL199779.1 samtools variation 801 801 . . . alleles " C G"; frequencies " 0.416666666666667 0.583333333333333"; depth 72 ; unknown ; N/A GL199779.1 samtools variation 849 849 . . . alleles " G A"; frequencies " 0.692771084337349 0.307228915662651"; depth 166 ; unknown ; N/A GL199779.1 samtools variation 874 874 . . . alleles " G A"; frequencies " 0.614718614718615 0.385281385281385"; depth 231 ; unknown ; N/A GL199779.1 samtools variation 937 937 . . . alleles " G A"; frequencies " 0.652941176470588 0.347058823529412"; depth 170 ; unknown ; N/A GL199779.1 samtools variation 941 941 . . . alleles " C A"; frequencies " 0.563636363636364 0.43030303030303"; depth 165 ; unknown ; N/A GL199784.1 samtools variation 201 201 . . . alleles " G A"; frequencies " 0.256410256410256 0.743589743589744"; depth 39 ; unknown ; N/A GL199784.1 samtools variation 370 370 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; N/A GL199784.1 samtools variation 703 703 . . . alleles " A G"; frequencies " 0.446808510638298 0.553191489361702"; depth 47 ; unknown ; N/A GL199784.1 samtools variation 890 890 . . . alleles " C G"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL199787.1 samtools variation 482 482 . . . alleles " A G"; frequencies " 0.76 0.24"; depth 25 ; unknown ; N/A GL199809.1 samtools variation 223 223 . . . alleles " G A"; frequencies " 0.763157894736842 0.236842105263158"; depth 38 ; unknown ; N/A GL199809.1 samtools variation 393 393 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL199845.1 samtools variation 560 560 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL199845.1 samtools variation 758 758 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL199845.1 samtools variation 916 916 . . . alleles " T G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL199884.1 samtools variation 505 505 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL199916.1 samtools variation 444 444 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 51 ; unknown ; N/A GL199933.1 samtools variation 684 684 . . . alleles " A G"; frequencies " 0.441558441558442 0.558441558441558"; depth 77 ; unknown ; N/A GL199938.1 samtools variation 499 499 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 91 ; unknown ; N/A GL199938.1 samtools variation 658 658 . . . alleles " G A"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL199944.1 samtools variation 520 520 . . . alleles " G T"; frequencies " 0.526315789473684 0.473684210526316"; depth 38 ; unknown ; N/A GL199944.1 samtools variation 919 919 . . . alleles " C T"; frequencies " 0.706093189964158 0.293906810035842"; depth 279 ; unknown ; N/A GL199944.1 samtools variation 920 920 . . . alleles " G A"; frequencies " 0.399280575539568 0.600719424460432"; depth 278 ; unknown ; N/A GL199944.1 samtools variation 963 963 . . . alleles " A G"; frequencies " 0.549828178694158 0.450171821305842"; depth 291 ; known ; N/A GL199957.1 samtools variation 632 632 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL199995.1 samtools variation 260 260 . . . alleles " G C"; frequencies " 0.6875 0.3125"; depth 48 ; unknown ; N/A GL199995.1 samtools variation 314 314 . . . alleles " A G"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL199995.1 samtools variation 816 816 . . . alleles " G T"; frequencies " 0.5 0.5"; depth 48 ; unknown ; N/A GL200017.1 samtools variation 135 135 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL200017.1 samtools variation 205 205 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL200017.1 samtools variation 273 273 . . . alleles " G A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL200017.1 samtools variation 443 443 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL200037.1 samtools variation 558 558 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 35 ; unknown ; N/A GL200041.1 samtools variation 487 487 . . . alleles " G A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL200041.1 samtools variation 501 501 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL200041.1 samtools variation 519 519 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 30 ; unknown ; N/A GL200041.1 samtools variation 553 553 . . . alleles " C T"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; unknown ; N/A GL200221.1 samtools variation 500 500 . . . alleles " G T"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL200221.1 samtools variation 678 678 . . . alleles " T C"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL200221.1 samtools variation 815 815 . . . alleles " T A"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL200221.1 samtools variation 820 820 . . . alleles " C T"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; unknown ; N/A GL200221.1 samtools variation 869 869 . . . alleles " A C"; frequencies " 0.3 0.7"; depth 10 ; unknown ; N/A GL200250.1 samtools variation 249 249 . . . alleles " A G"; frequencies " 0.590225563909774 0.409774436090226"; depth 266 ; unknown ; non-synonymous GL200250.1 samtools variation 369 369 . . . alleles " C T"; frequencies " 0.748129675810474 0.251870324189526"; depth 401 ; unknown ; synonymous GL200282.1 samtools variation 165 165 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL200286.1 samtools variation 848 848 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL200428.1 samtools variation 160 160 . . . alleles " C T"; frequencies " 0.294117647058824 0.705882352941177"; depth 68 ; unknown ; N/A GL200428.1 samtools variation 236 236 . . . alleles " C T"; frequencies " 0.735042735042735 0.264957264957265"; depth 117 ; unknown ; N/A GL200428.1 samtools variation 327 327 . . . alleles " T A"; frequencies " 0.647058823529412 0.352941176470588"; depth 85 ; unknown ; N/A GL200428.1 samtools variation 341 341 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 84 ; unknown ; N/A GL200428.1 samtools variation 469 469 . . . alleles " G A"; frequencies " 0.420289855072464 0.579710144927536"; depth 69 ; unknown ; N/A GL200428.1 samtools variation 672 672 . . . alleles " C G"; frequencies " 0.661764705882353 0.338235294117647"; depth 68 ; unknown ; N/A GL200470.1 samtools variation 270 270 . . . alleles " A C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL200517.1 samtools variation 473 473 . . . alleles " G A"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL200531.1 samtools variation 649 649 . . . alleles " C T"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; unknown ; N/A GL200531.1 samtools variation 791 791 . . . alleles " T C"; frequencies " 0.63716814159292 0.36283185840708"; depth 113 ; unknown ; N/A GL200543.1 samtools variation 352 352 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 84 ; unknown ; N/A GL200543.1 samtools variation 436 436 . . . alleles " G C"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL200543.1 samtools variation 518 518 . . . alleles " C A"; frequencies " 0.571428571428571 0.428571428571429"; depth 56 ; unknown ; N/A GL200543.1 samtools variation 544 544 . . . alleles " G A"; frequencies " 0.771929824561403 0.228070175438596"; depth 57 ; unknown ; N/A GL200594.1 samtools variation 217 217 . . . alleles " G A"; frequencies " 0.25 0.75"; depth 12 ; unknown ; N/A GL200596.1 samtools variation 196 196 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL200628.1 samtools variation 214 214 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL200628.1 samtools variation 637 637 . . . alleles " G A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL200628.1 samtools variation 684 684 . . . alleles " C A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL200628.1 samtools variation 694 694 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL200628.1 samtools variation 827 827 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL200634.1 samtools variation 834 834 . . . alleles " C T"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL200742.1 samtools variation 225 225 . . . alleles " A G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL200742.1 samtools variation 686 686 . . . alleles " C T"; frequencies " 0.728813559322034 0.271186440677966"; depth 59 ; unknown ; N/A GL200742.1 samtools variation 824 824 . . . alleles " A G"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; unknown ; N/A GL200757.1 samtools variation 563 563 . . . alleles " G T"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL200757.1 samtools variation 636 636 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL200757.1 samtools variation 640 640 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL200963.1 samtools variation 235 235 . . . alleles " G A"; frequencies " 0.74 0.26"; depth 50 ; unknown ; N/A GL200965.1 samtools variation 671 671 . . . alleles " A G"; frequencies " 0.317073170731707 0.682926829268293"; depth 41 ; unknown ; N/A GL200965.1 samtools variation 797 797 . . . alleles " T C"; frequencies " 0.384615384615385 0.615384615384615"; depth 52 ; unknown ; N/A GL200965.1 samtools variation 809 809 . . . alleles " T C"; frequencies " 0.711111111111111 0.288888888888889"; depth 45 ; unknown ; N/A GL201022.1 samtools variation 206 206 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL201022.1 samtools variation 514 514 . . . alleles " C T"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; unknown ; N/A GL201022.1 samtools variation 780 780 . . . alleles " C T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL201060.1 samtools variation 252 252 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL201081.1 samtools variation 474 474 . . . alleles " G A"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; unknown ; N/A GL201081.1 samtools variation 781 781 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 93 ; unknown ; N/A GL201081.1 samtools variation 848 848 . . . alleles " T C"; frequencies " 0.405172413793103 0.594827586206897"; depth 116 ; unknown ; N/A GL201081.1 samtools variation 864 864 . . . alleles " G C"; frequencies " 0.580952380952381 0.419047619047619"; depth 105 ; unknown ; N/A GL201085.1 samtools variation 321 321 . . . alleles " G C"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL201085.1 samtools variation 376 376 . . . alleles " T C"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL201096.1 samtools variation 677 677 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL201096.1 samtools variation 709 709 . . . alleles " T G"; frequencies " 0.615384615384615 0.384615384615385"; depth 26 ; unknown ; N/A GL201137.1 samtools variation 60 60 . . . alleles " C T"; frequencies " 0.544444444444444 0.455555555555556"; depth 90 ; unknown ; N/A GL201137.1 samtools variation 207 207 . . . alleles " G A"; frequencies " 0.626262626262626 0.373737373737374"; depth 198 ; unknown ; N/A GL201137.1 samtools variation 233 233 . . . alleles " T C"; frequencies " 0.239234449760766 0.760765550239234"; depth 209 ; unknown ; N/A GL201137.1 samtools variation 299 299 . . . alleles " G C"; frequencies " 0.325757575757576 0.674242424242424"; depth 132 ; unknown ; N/A GL201138.1 samtools variation 421 421 . . . alleles " G A"; frequencies " 0.703296703296703 0.296703296703297"; depth 91 ; unknown ; N/A GL201138.1 samtools variation 449 449 . . . alleles " T C"; frequencies " 0.755102040816326 0.244897959183673"; depth 98 ; unknown ; N/A GL201138.1 samtools variation 505 505 . . . alleles " G A"; frequencies " 0.757575757575758 0.242424242424242"; depth 132 ; unknown ; N/A GL201138.1 samtools variation 676 676 . . . alleles " C A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; known ; N/A GL201148.1 samtools variation 226 226 . . . alleles " C G"; frequencies " 0.774193548387097 0.225806451612903"; depth 31 ; known ; N/A GL201148.1 samtools variation 290 290 . . . alleles " G T"; frequencies " 0.741935483870968 0.258064516129032"; depth 31 ; unknown ; N/A GL201148.1 samtools variation 495 495 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL201148.1 samtools variation 513 513 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL201148.1 samtools variation 531 531 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL201148.1 samtools variation 636 636 . . . alleles " C T"; frequencies " 0.766666666666667 0.233333333333333"; depth 30 ; unknown ; N/A GL201148.1 samtools variation 649 649 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 27 ; unknown ; N/A GL201172.1 samtools variation 300 300 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL201172.1 samtools variation 352 352 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL201211.1 samtools variation 347 347 . . . alleles " A G"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL201256.1 samtools variation 736 736 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL201317.1 samtools variation 313 313 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL201349.1 samtools variation 555 555 . . . alleles " C T"; frequencies " 0.612903225806452 0.387096774193548"; depth 31 ; unknown ; N/A GL201349.1 samtools variation 588 588 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 35 ; unknown ; N/A GL201488.1 samtools variation 826 826 . . . alleles " T C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL201527.1 samtools variation 636 636 . . . alleles " C G"; frequencies " 0.775280898876405 0.224719101123595"; depth 178 ; known ; N/A GL201527.1 samtools variation 715 715 . . . alleles " T G"; frequencies " 0.308943089430894 0.691056910569106"; depth 246 ; known ; N/A GL201527.1 samtools variation 768 768 . . . alleles " A G"; frequencies " 0.290748898678414 0.709251101321586"; depth 227 ; unknown ; N/A GL201539.1 samtools variation 252 252 . . . alleles " G T"; frequencies " 0.2 0.8"; depth 15 ; unknown ; N/A GL201547.1 samtools variation 561 561 . . . alleles " C T"; frequencies " 0.619047619047619 0.380952380952381"; depth 21 ; unknown ; N/A GL201562.1 samtools variation 546 546 . . . alleles " C T"; frequencies " 0.212765957446809 0.787234042553192"; depth 47 ; known ; N/A GL201631.1 samtools variation 832 832 . . . alleles " T G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL201631.1 samtools variation 842 842 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL201667.1 samtools variation 712 712 . . . alleles " A T"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; unknown ; N/A GL201711.1 samtools variation 250 250 . . . alleles " T C"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; unknown ; N/A GL201711.1 samtools variation 529 529 . . . alleles " C T"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL201780.1 samtools variation 147 147 . . . alleles " C T"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL201780.1 samtools variation 181 181 . . . alleles " C T"; frequencies " 0.605263157894737 0.394736842105263"; depth 38 ; unknown ; N/A GL201892.1 samtools variation 553 553 . . . alleles " C G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL201922.1 samtools variation 352 352 . . . alleles " T G"; frequencies " 0.719512195121951 0.280487804878049"; depth 82 ; unknown ; N/A GL201943.1 samtools variation 560 560 . . . alleles " C T"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL201949.1 samtools variation 127 127 . . . alleles " G T"; frequencies " 0.679245283018868 0.320754716981132"; depth 53 ; known ; N/A GL201949.1 samtools variation 282 282 . . . alleles " A G"; frequencies " 0.491803278688525 0.508196721311475"; depth 61 ; unknown ; N/A GL201949.1 samtools variation 315 315 . . . alleles " T G"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; N/A GL201949.1 samtools variation 517 517 . . . alleles " A G"; frequencies " 0.793103448275862 0.206896551724138"; depth 58 ; unknown ; N/A GL201949.1 samtools variation 651 651 . . . alleles " T G"; frequencies " 0.75609756097561 0.24390243902439"; depth 41 ; unknown ; N/A GL201949.1 samtools variation 693 693 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL201949.1 samtools variation 728 728 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL201964.1 samtools variation 588 588 . . . alleles " C A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL201973.1 samtools variation 132 132 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL201977.1 samtools variation 407 407 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL201978.1 samtools variation 371 371 . . . alleles " C T"; frequencies " 0.228571428571429 0.771428571428571"; depth 35 ; unknown ; N/A GL201978.1 samtools variation 498 498 . . . alleles " T A"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL201998.1 samtools variation 121 121 . . . alleles " C T"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL201998.1 samtools variation 122 122 . . . alleles " A G"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL201998.1 samtools variation 140 140 . . . alleles " T C"; frequencies " 0.407407407407407 0.592592592592593"; depth 27 ; unknown ; N/A GL201998.1 samtools variation 141 141 . . . alleles " G A"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL201998.1 samtools variation 246 246 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 22 ; unknown ; N/A GL201998.1 samtools variation 297 297 . . . alleles " A T"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL201998.1 samtools variation 447 447 . . . alleles " A G"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL201998.1 samtools variation 526 526 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 40 ; unknown ; N/A GL201998.1 samtools variation 681 681 . . . alleles " C G"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL202011.1 samtools variation 264 264 . . . alleles " T G"; frequencies " 0.576923076923077 0.423076923076923"; depth 26 ; unknown ; N/A GL202011.1 samtools variation 464 464 . . . alleles " G T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL202011.1 samtools variation 472 472 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL202011.1 samtools variation 490 490 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL202027.1 samtools variation 214 214 . . . alleles " C G"; frequencies " 0.604395604395604 0.395604395604396"; depth 91 ; unknown ; N/A GL202042.1 samtools variation 719 719 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL202073.1 samtools variation 159 159 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL202073.1 samtools variation 162 162 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL202073.1 samtools variation 166 166 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL202073.1 samtools variation 355 355 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL202073.1 samtools variation 358 358 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 21 ; unknown ; N/A GL202092.1 samtools variation 210 210 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 44 ; unknown ; N/A GL202099.1 samtools variation 289 289 . . . alleles " G A"; frequencies " 0.31390134529148 0.68609865470852"; depth 446 ; unknown ; N/A GL202139.1 samtools variation 231 231 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL202139.1 samtools variation 285 285 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL202248.1 samtools variation 36 36 . . . alleles " C T"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; known ; N/A GL202248.1 samtools variation 118 118 . . . alleles " C T"; frequencies " 0.375 0.625"; depth 24 ; known ; N/A GL202248.1 samtools variation 518 518 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL202429.1 samtools variation 680 680 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL202488.1 samtools variation 745 745 . . . alleles " A G"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; known ; N/A GL202518.1 samtools variation 199 199 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; known ; N/A GL202518.1 samtools variation 261 261 . . . alleles " A G"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL202518.1 samtools variation 361 361 . . . alleles " A G"; frequencies " 0.252873563218391 0.747126436781609"; depth 87 ; known ; N/A GL202518.1 samtools variation 378 378 . . . alleles " G A"; frequencies " 0.20125786163522 0.79874213836478"; depth 159 ; unknown ; N/A GL202534.1 samtools variation 459 459 . . . alleles " C A"; frequencies " 0.415094339622642 0.584905660377358"; depth 53 ; unknown ; N/A GL202534.1 samtools variation 558 558 . . . alleles " C T"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; unknown ; N/A GL202534.1 samtools variation 585 585 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 26 ; unknown ; N/A GL202549.1 samtools variation 737 737 . . . alleles " G A"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; N/A GL202577.1 samtools variation 348 348 . . . alleles " T G"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; N/A GL202577.1 samtools variation 414 414 . . . alleles " G A"; frequencies " 0.794871794871795 0.205128205128205"; depth 78 ; known ; N/A GL202606.1 samtools variation 377 377 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL202606.1 samtools variation 379 379 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL202645.1 samtools variation 219 219 . . . alleles " A G"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL202645.1 samtools variation 258 258 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL202737.1 samtools variation 242 242 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL202737.1 samtools variation 762 762 . . . alleles " T G"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL202901.1 samtools variation 366 366 . . . alleles " G C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL202901.1 samtools variation 623 623 . . . alleles " G T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL202901.1 samtools variation 673 673 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL202901.1 samtools variation 674 674 . . . alleles " T G"; frequencies " 0.375 0.625"; depth 16 ; unknown ; N/A GL202906.1 samtools variation 151 151 . . . alleles " G A"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL202911.1 samtools variation 288 288 . . . alleles " C T"; frequencies " 0.745454545454545 0.254545454545455"; depth 55 ; unknown ; N/A GL202947.1 samtools variation 35 35 . . . alleles " G C"; frequencies " 0.5 0.444444444444444"; depth 18 ; unknown ; N/A GL202947.1 samtools variation 309 309 . . . alleles " A G"; frequencies " 0.636842105263158 0.363157894736842"; depth 190 ; unknown ; N/A GL202947.1 samtools variation 404 404 . . . alleles " T C"; frequencies " 0.580645161290323 0.419354838709677"; depth 155 ; unknown ; N/A GL202947.1 samtools variation 601 601 . . . alleles " C T"; frequencies " 0.716417910447761 0.283582089552239"; depth 67 ; unknown ; N/A GL202980.1 samtools variation 574 574 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL203035.1 samtools variation 427 427 . . . alleles " G C"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL203035.1 samtools variation 550 550 . . . alleles " T G"; frequencies " 0.72463768115942 0.27536231884058"; depth 138 ; unknown ; N/A GL203078.1 samtools variation 486 486 . . . alleles " T C"; frequencies " 0.586206896551724 0.413793103448276"; depth 29 ; known ; synonymous GL203078.1 samtools variation 615 615 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 38 ; unknown ; synonymous GL203095.1 samtools variation 85 85 . . . alleles " C T"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL203095.1 samtools variation 198 198 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL203095.1 samtools variation 311 311 . . . alleles " C T"; frequencies " 0.263157894736842 0.736842105263158"; depth 57 ; unknown ; N/A GL203095.1 samtools variation 312 312 . . . alleles " C T"; frequencies " 0.263157894736842 0.736842105263158"; depth 57 ; unknown ; N/A GL203095.1 samtools variation 509 509 . . . alleles " C A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL203110.1 samtools variation 188 188 . . . alleles " T C"; frequencies " 0.223880597014925 0.776119402985075"; depth 67 ; unknown ; N/A GL203142.1 samtools variation 161 161 . . . alleles " A T"; frequencies " 0.666666666666667 0.333333333333333"; depth 24 ; unknown ; N/A GL203142.1 samtools variation 266 266 . . . alleles " C G"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL203142.1 samtools variation 279 279 . . . alleles " T G"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL203142.1 samtools variation 362 362 . . . alleles " G A"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL203142.1 samtools variation 389 389 . . . alleles " G A"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL203142.1 samtools variation 397 397 . . . alleles " C T"; frequencies " 0.730769230769231 0.269230769230769"; depth 26 ; unknown ; N/A GL203142.1 samtools variation 459 459 . . . alleles " A G"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL203152.1 samtools variation 241 241 . . . alleles " C G"; frequencies " 0.785714285714286 0.214285714285714"; depth 56 ; known ; N/A GL203152.1 samtools variation 420 420 . . . alleles " A G"; frequencies " 0.409638554216867 0.590361445783133"; depth 83 ; unknown ; N/A GL203152.1 samtools variation 432 432 . . . alleles " G A"; frequencies " 0.368421052631579 0.631578947368421"; depth 95 ; unknown ; N/A GL203152.1 samtools variation 628 628 . . . alleles " T G"; frequencies " 0.786666666666667 0.213333333333333"; depth 75 ; known ; N/A GL203152.1 samtools variation 633 633 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 80 ; known ; N/A GL203152.1 samtools variation 672 672 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 70 ; unknown ; N/A GL203152.1 samtools variation 699 699 . . . alleles " C T"; frequencies " 0.469387755102041 0.530612244897959"; depth 49 ; unknown ; N/A GL203216.1 samtools variation 614 614 . . . alleles " G A"; frequencies " 0.743589743589744 0.256410256410256"; depth 39 ; unknown ; synonymous GL203272.1 samtools variation 270 270 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL203288.1 samtools variation 536 536 . . . alleles " T G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL203338.1 samtools variation 298 298 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL203352.1 samtools variation 571 571 . . . alleles " T C"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL203394.1 samtools variation 243 243 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL203401.1 samtools variation 137 137 . . . alleles " C A"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL203401.1 samtools variation 215 215 . . . alleles " A G"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL203402.1 samtools variation 151 151 . . . alleles " T A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL203402.1 samtools variation 506 506 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 22 ; unknown ; N/A GL203402.1 samtools variation 617 617 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL203402.1 samtools variation 661 661 . . . alleles " C T"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL203459.1 samtools variation 524 524 . . . alleles " C T"; frequencies " 0.630434782608696 0.369565217391304"; depth 46 ; known ; N/A GL203485.1 samtools variation 552 552 . . . alleles " G C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL203523.1 samtools variation 389 389 . . . alleles " A C"; frequencies " 0.738095238095238 0.261904761904762"; depth 42 ; unknown ; N/A GL203523.1 samtools variation 433 433 . . . alleles " G A"; frequencies " 0.787878787878788 0.212121212121212"; depth 66 ; unknown ; N/A GL203523.1 samtools variation 635 635 . . . alleles " C G"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL203560.1 samtools variation 370 370 . . . alleles " C T"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; unknown ; N/A GL203560.1 samtools variation 373 373 . . . alleles " A G"; frequencies " 0.485714285714286 0.514285714285714"; depth 35 ; unknown ; N/A GL203560.1 samtools variation 542 542 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 46 ; unknown ; N/A GL203560.1 samtools variation 607 607 . . . alleles " G A"; frequencies " 0.740740740740741 0.259259259259259"; depth 27 ; unknown ; N/A GL203585.1 samtools variation 363 363 . . . alleles " T G"; frequencies " 0.739130434782609 0.260869565217391"; depth 23 ; unknown ; N/A GL203585.1 samtools variation 460 460 . . . alleles " T C"; frequencies " 0.392857142857143 0.607142857142857"; depth 28 ; unknown ; N/A GL203585.1 samtools variation 562 562 . . . alleles " C A"; frequencies " 0.528301886792453 0.471698113207547"; depth 53 ; unknown ; N/A GL203585.1 samtools variation 583 583 . . . alleles " G A"; frequencies " 0.693877551020408 0.306122448979592"; depth 49 ; unknown ; N/A GL203586.1 samtools variation 459 459 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL203586.1 samtools variation 527 527 . . . alleles " T A"; frequencies " 0.648648648648649 0.351351351351351"; depth 37 ; unknown ; N/A GL203649.1 samtools variation 526 526 . . . alleles " A G"; frequencies " 0.486842105263158 0.513157894736842"; depth 76 ; unknown ; N/A GL203649.1 samtools variation 529 529 . . . alleles " G C"; frequencies " 0.434782608695652 0.565217391304348"; depth 69 ; unknown ; N/A GL203649.1 samtools variation 553 553 . . . alleles " A C"; frequencies " 0.551282051282051 0.448717948717949"; depth 78 ; unknown ; N/A GL203666.1 samtools variation 114 114 . . . alleles " A G"; frequencies " 0.559210526315789 0.440789473684211"; depth 608 ; unknown ; N/A GL203666.1 samtools variation 351 351 . . . alleles " C G"; frequencies " 0.744505494505495 0.255494505494505"; depth 364 ; unknown ; N/A GL203666.1 samtools variation 713 713 . . . alleles " G A"; frequencies " 0.649122807017544 0.350877192982456"; depth 57 ; unknown ; N/A GL203672.1 samtools variation 89 89 . . . alleles " C T"; frequencies " 0.641618497109827 0.358381502890173"; depth 346 ; unknown ; N/A GL203672.1 samtools variation 106 106 . . . alleles " A G"; frequencies " 0.630922693266833 0.369077306733167"; depth 401 ; unknown ; N/A GL203672.1 samtools variation 372 372 . . . alleles " A C"; frequencies " 0.3375 0.6625"; depth 560 ; unknown ; N/A GL203672.1 samtools variation 627 627 . . . alleles " G A"; frequencies " 0.766666666666667 0.233333333333333"; depth 690 ; unknown ; N/A GL203672.1 samtools variation 635 635 . . . alleles " C T"; frequencies " 0.788059701492537 0.211940298507463"; depth 670 ; unknown ; N/A GL203672.1 samtools variation 697 697 . . . alleles " T A"; frequencies " 0.609756097560976 0.390243902439024"; depth 123 ; unknown ; N/A GL203736.1 samtools variation 465 465 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL203815.1 samtools variation 179 179 . . . alleles " C T"; frequencies " 0.756756756756757 0.243243243243243"; depth 37 ; unknown ; N/A GL203815.1 samtools variation 210 210 . . . alleles " T C"; frequencies " 0.314814814814815 0.685185185185185"; depth 54 ; unknown ; N/A GL203815.1 samtools variation 525 525 . . . alleles " T C"; frequencies " 0.243243243243243 0.756756756756757"; depth 37 ; unknown ; N/A GL203825.1 samtools variation 302 302 . . . alleles " G A"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL203856.1 samtools variation 126 126 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 36 ; unknown ; N/A GL203856.1 samtools variation 239 239 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 44 ; unknown ; N/A GL203984.1 samtools variation 493 493 . . . alleles " T A"; frequencies " 0.627450980392157 0.372549019607843"; depth 102 ; unknown ; N/A GL204033.1 samtools variation 343 343 . . . alleles " G A"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL204033.1 samtools variation 455 455 . . . alleles " G C"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL204033.1 samtools variation 479 479 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; known ; N/A GL204033.1 samtools variation 485 485 . . . alleles " C G"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL204033.1 samtools variation 492 492 . . . alleles " T C"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL204033.1 samtools variation 637 637 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL204079.1 samtools variation 250 250 . . . alleles " G A"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL204081.1 samtools variation 151 151 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL204097.1 samtools variation 460 460 . . . alleles " C A"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL204150.1 samtools variation 208 208 . . . alleles " G C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL204150.1 samtools variation 434 434 . . . alleles " G A"; frequencies " 0.625 0.375"; depth 16 ; unknown ; N/A GL204247.1 samtools variation 139 139 . . . alleles " C G"; frequencies " 0.7625 0.2375"; depth 160 ; unknown ; N/A GL204247.1 samtools variation 238 238 . . . alleles " C T"; frequencies " 0.748148148148148 0.251851851851852"; depth 135 ; unknown ; N/A GL204247.1 samtools variation 433 433 . . . alleles " T C"; frequencies " 0.212121212121212 0.787878787878788"; depth 66 ; unknown ; N/A GL204247.1 samtools variation 622 622 . . . alleles " T G"; frequencies " 0.731707317073171 0.268292682926829"; depth 41 ; unknown ; N/A GL204252.1 samtools variation 123 123 . . . alleles " T C"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL204344.1 samtools variation 130 130 . . . alleles " T C"; frequencies " 0.289473684210526 0.710526315789474"; depth 38 ; unknown ; N/A GL204454.1 samtools variation 158 158 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL204454.1 samtools variation 322 322 . . . alleles " G A"; frequencies " 0.551724137931034 0.448275862068966"; depth 29 ; unknown ; N/A GL204454.1 samtools variation 356 356 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL204454.1 samtools variation 478 478 . . . alleles " C T"; frequencies " 0.754716981132076 0.245283018867925"; depth 53 ; unknown ; N/A GL204640.1 samtools variation 128 128 . . . alleles " G T"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL204640.1 samtools variation 159 159 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 35 ; unknown ; N/A GL204646.1 samtools variation 273 273 . . . alleles " T G"; frequencies " 0.779661016949153 0.220338983050847"; depth 118 ; unknown ; N/A GL204646.1 samtools variation 394 394 . . . alleles " A G"; frequencies " 0.426966292134831 0.573033707865168"; depth 89 ; unknown ; N/A GL204646.1 samtools variation 423 423 . . . alleles " T C"; frequencies " 0.693877551020408 0.306122448979592"; depth 49 ; unknown ; N/A GL204646.1 samtools variation 506 506 . . . alleles " G A"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; unknown ; N/A GL204654.1 samtools variation 509 509 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL204706.1 samtools variation 302 302 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL204849.1 samtools variation 346 346 . . . alleles " G A"; frequencies " 0.452830188679245 0.547169811320755"; depth 53 ; unknown ; N/A GL205036.1 samtools variation 566 566 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL205125.1 samtools variation 135 135 . . . alleles " A G"; frequencies " 0.261904761904762 0.738095238095238"; depth 42 ; known ; N/A GL205125.1 samtools variation 258 258 . . . alleles " T G"; frequencies " 0.337078651685393 0.662921348314607"; depth 178 ; unknown ; N/A GL205161.1 samtools variation 490 490 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; known ; N/A GL205248.1 samtools variation 138 138 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL205301.1 samtools variation 120 120 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL205322.1 samtools variation 489 489 . . . alleles " G A"; frequencies " 0.3 0.7"; depth 20 ; unknown ; N/A GL205359.1 samtools variation 202 202 . . . alleles " G A"; frequencies " 0.24390243902439 0.75609756097561"; depth 41 ; unknown ; N/A GL205361.1 samtools variation 523 523 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL205393.1 samtools variation 393 393 . . . alleles " T C"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL205432.1 samtools variation 365 365 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL205536.1 samtools variation 375 375 . . . alleles " T C"; frequencies " 0.225 0.775"; depth 40 ; unknown ; N/A GL205536.1 samtools variation 388 388 . . . alleles " T C"; frequencies " 0.283333333333333 0.716666666666667"; depth 60 ; unknown ; N/A GL205568.1 samtools variation 173 173 . . . alleles " A G"; frequencies " 0.409090909090909 0.590909090909091"; depth 22 ; known ; N/A GL205706.1 samtools variation 340 340 . . . alleles " A T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL205706.1 samtools variation 432 432 . . . alleles " G C"; frequencies " 0.75 0.25"; depth 16 ; known ; N/A GL205721.1 samtools variation 513 513 . . . alleles " G A"; frequencies " 0.752066115702479 0.247933884297521"; depth 121 ; unknown ; N/A GL205724.1 samtools variation 117 117 . . . alleles " A G"; frequencies " 0.443478260869565 0.556521739130435"; depth 230 ; unknown ; N/A GL205724.1 samtools variation 120 120 . . . alleles " A G"; frequencies " 0.68 0.32"; depth 225 ; unknown ; N/A GL205759.1 samtools variation 253 253 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL205897.1 samtools variation 274 274 . . . alleles " A T"; frequencies " 0.385542168674699 0.614457831325301"; depth 83 ; unknown ; N/A GL205897.1 samtools variation 438 438 . . . alleles " G A"; frequencies " 0.451612903225806 0.548387096774194"; depth 31 ; unknown ; N/A GL205897.1 samtools variation 509 509 . . . alleles " G A"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; N/A GL205897.1 samtools variation 515 515 . . . alleles " C T"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL205897.1 samtools variation 544 544 . . . alleles " A C"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL206050.1 samtools variation 554 554 . . . alleles " C G"; frequencies " 0.791666666666667 0.208333333333333"; depth 72 ; unknown ; N/A GL206174.1 samtools variation 281 281 . . . alleles " T C"; frequencies " 0.488095238095238 0.511904761904762"; depth 84 ; unknown ; N/A GL206174.1 samtools variation 416 416 . . . alleles " C T"; frequencies " 0.56 0.44"; depth 25 ; unknown ; N/A GL206174.1 samtools variation 434 434 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 28 ; unknown ; N/A GL206174.1 samtools variation 568 568 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL206289.1 samtools variation 230 230 . . . alleles " T C"; frequencies " 0.2 0.8"; depth 25 ; known ; N/A GL206340.1 samtools variation 205 205 . . . alleles " C A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL206340.1 samtools variation 501 501 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL206396.1 samtools variation 440 440 . . . alleles " C T"; frequencies " 0.643312101910828 0.356687898089172"; depth 157 ; unknown ; N/A GL206517.1 samtools variation 178 178 . . . alleles " T A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; known ; N/A GL206545.1 samtools variation 411 411 . . . alleles " T C"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL206585.1 samtools variation 64 64 . . . alleles " C G"; frequencies " 0.624242424242424 0.375757575757576"; depth 165 ; known ; N/A GL206630.1 samtools variation 334 334 . . . alleles " T G"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL206630.1 samtools variation 501 501 . . . alleles " T A"; frequencies " 0.355932203389831 0.644067796610169"; depth 59 ; unknown ; N/A GL206665.1 samtools variation 367 367 . . . alleles " C A"; frequencies " 0.755813953488372 0.244186046511628"; depth 86 ; unknown ; N/A GL206665.1 samtools variation 421 421 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 77 ; unknown ; N/A GL206673.1 samtools variation 376 376 . . . alleles " T C"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL206759.1 samtools variation 133 133 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL206759.1 samtools variation 197 197 . . . alleles " T G"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL206759.1 samtools variation 219 219 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL206759.1 samtools variation 248 248 . . . alleles " A G"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL206759.1 samtools variation 337 337 . . . alleles " T G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL206780.1 samtools variation 410 410 . . . alleles " G C"; frequencies " 0.526315789473684 0.473684210526316"; depth 19 ; unknown ; N/A GL206813.1 samtools variation 342 342 . . . alleles " C A"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL206863.1 samtools variation 221 221 . . . alleles " G A"; frequencies " 0.686567164179104 0.313432835820896"; depth 67 ; unknown ; N/A GL206978.1 samtools variation 311 311 . . . alleles " C T"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL206978.1 samtools variation 316 316 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL206978.1 samtools variation 379 379 . . . alleles " G A"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL206978.1 samtools variation 413 413 . . . alleles " A C"; frequencies " 0.238095238095238 0.761904761904762"; depth 21 ; known ; N/A GL207039.1 samtools variation 128 128 . . . alleles " G A"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL207072.1 samtools variation 129 129 . . . alleles " A C"; frequencies " 0.625 0.3125"; depth 16 ; unknown ; N/A GL207072.1 samtools variation 183 183 . . . alleles " G C"; frequencies " 0.578947368421053 0.421052631578947"; depth 19 ; unknown ; N/A GL207072.1 samtools variation 279 279 . . . alleles " A G"; frequencies " 0.411764705882353 0.588235294117647"; depth 17 ; unknown ; N/A GL207072.1 samtools variation 480 480 . . . alleles " A T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL207092.1 samtools variation 348 348 . . . alleles " A G"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL207092.1 samtools variation 391 391 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL207193.1 samtools variation 432 432 . . . alleles " C G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL207193.1 samtools variation 443 443 . . . alleles " T C"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL207193.1 samtools variation 499 499 . . . alleles " T G"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL207284.1 samtools variation 569 569 . . . alleles " A G"; frequencies " 0.769230769230769 0.230769230769231"; depth 26 ; unknown ; N/A GL207317.1 samtools variation 204 204 . . . alleles " G T"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL207317.1 samtools variation 281 281 . . . alleles " G C"; frequencies " 0.68 0.32"; depth 25 ; unknown ; N/A GL207458.1 samtools variation 177 177 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL207479.1 samtools variation 113 113 . . . alleles " T C"; frequencies " 0.65 0.35"; depth 20 ; known ; N/A GL207479.1 samtools variation 288 288 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; known ; N/A GL207479.1 samtools variation 413 413 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL207479.1 samtools variation 418 418 . . . alleles " T C"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL207479.1 samtools variation 485 485 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 16 ; known ; N/A GL207500.1 samtools variation 166 166 . . . alleles " T C"; frequencies " 0.695652173913043 0.304347826086957"; depth 69 ; known ; N/A GL207562.1 samtools variation 249 249 . . . alleles " A C"; frequencies " 0.25 0.75"; depth 24 ; unknown ; N/A GL207578.1 samtools variation 41 41 . . . alleles " G A"; frequencies " 0.697916666666667 0.302083333333333"; depth 192 ; unknown ; N/A GL207620.1 samtools variation 485 485 . . . alleles " T G"; frequencies " 0.793103448275862 0.206896551724138"; depth 29 ; unknown ; N/A GL207623.1 samtools variation 300 300 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL207677.1 samtools variation 187 187 . . . alleles " T C"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL207769.1 samtools variation 189 189 . . . alleles " A G"; frequencies " 0.529411764705882 0.470588235294118"; depth 17 ; known ; N/A GL207769.1 samtools variation 214 214 . . . alleles " A G"; frequencies " 0.470588235294118 0.529411764705882"; depth 17 ; known ; N/A GL207769.1 samtools variation 393 393 . . . alleles " T C"; frequencies " 0.405405405405405 0.594594594594595"; depth 37 ; known ; N/A GL207792.1 samtools variation 516 516 . . . alleles " A G"; frequencies " 0.30188679245283 0.69811320754717"; depth 53 ; unknown ; N/A GL207792.1 samtools variation 556 556 . . . alleles " C A"; frequencies " 0.333333333333333 0.666666666666667"; depth 30 ; unknown ; N/A GL207799.1 samtools variation 187 187 . . . alleles " T C"; frequencies " 0.379310344827586 0.620689655172414"; depth 29 ; known ; N/A GL207802.1 samtools variation 472 472 . . . alleles " C T"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL207829.1 samtools variation 167 167 . . . alleles " G C"; frequencies " 0.564516129032258 0.435483870967742"; depth 62 ; unknown ; N/A GL207829.1 samtools variation 224 224 . . . alleles " G C"; frequencies " 0.635416666666667 0.354166666666667"; depth 96 ; unknown ; N/A GL207829.1 samtools variation 260 260 . . . alleles " C T"; frequencies " 0.369369369369369 0.630630630630631"; depth 111 ; unknown ; N/A GL207829.1 samtools variation 292 292 . . . alleles " T C"; frequencies " 0.795180722891566 0.204819277108434"; depth 83 ; unknown ; N/A GL207829.1 samtools variation 375 375 . . . alleles " A C"; frequencies " 0.72 0.28"; depth 125 ; unknown ; N/A GL207862.1 samtools variation 374 374 . . . alleles " G T"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; known ; N/A GL207870.1 samtools variation 469 469 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL207870.1 samtools variation 477 477 . . . alleles " C T"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL207941.1 samtools variation 140 140 . . . alleles " G A"; frequencies " 0.587301587301587 0.412698412698413"; depth 315 ; unknown ; N/A GL207941.1 samtools variation 155 155 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 324 ; unknown ; N/A GL207941.1 samtools variation 248 248 . . . alleles " C T"; frequencies " 0.597883597883598 0.402116402116402"; depth 189 ; unknown ; N/A GL207941.1 samtools variation 282 282 . . . alleles " A G"; frequencies " 0.696969696969697 0.303030303030303"; depth 99 ; unknown ; N/A GL207990.1 samtools variation 273 273 . . . alleles " C T"; frequencies " 0.428571428571429 0.571428571428571"; depth 28 ; unknown ; N/A GL208033.1 samtools variation 136 136 . . . alleles " T C"; frequencies " 0.787234042553192 0.212765957446809"; depth 47 ; unknown ; non-synonymous GL208092.1 samtools variation 354 354 . . . alleles " C T"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL208092.1 samtools variation 415 415 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL208223.1 samtools variation 173 173 . . . alleles " C A"; frequencies " 0.704081632653061 0.295918367346939"; depth 98 ; unknown ; N/A GL208270.1 samtools variation 281 281 . . . alleles " C T"; frequencies " 0.681318681318681 0.318681318681319"; depth 91 ; unknown ; N/A GL208279.1 samtools variation 264 264 . . . alleles " A G"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL208286.1 samtools variation 186 186 . . . alleles " C T"; frequencies " 0.758620689655172 0.241379310344828"; depth 29 ; unknown ; N/A GL208286.1 samtools variation 257 257 . . . alleles " C T"; frequencies " 0.757575757575758 0.242424242424242"; depth 33 ; unknown ; N/A GL208409.1 samtools variation 410 410 . . . alleles " G T"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL208410.1 samtools variation 176 176 . . . alleles " A C"; frequencies " 0.369565217391304 0.630434782608696"; depth 46 ; unknown ; N/A GL208410.1 samtools variation 260 260 . . . alleles " C T"; frequencies " 0.280701754385965 0.719298245614035"; depth 57 ; unknown ; N/A GL208467.1 samtools variation 227 227 . . . alleles " A G"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL208501.1 samtools variation 63 63 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 18 ; unknown ; N/A GL208501.1 samtools variation 137 137 . . . alleles " A C"; frequencies " 0.5 0.5"; depth 36 ; unknown ; N/A GL208501.1 samtools variation 365 365 . . . alleles " A T"; frequencies " 0.75 0.25"; depth 40 ; unknown ; N/A GL208504.1 samtools variation 354 354 . . . alleles " A C"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL208570.1 samtools variation 347 347 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL208572.1 samtools variation 370 370 . . . alleles " C T"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL208680.1 samtools variation 232 232 . . . alleles " T C"; frequencies " 0.785714285714286 0.214285714285714"; depth 28 ; unknown ; N/A GL208705.1 samtools variation 478 478 . . . alleles " A G"; frequencies " 0.62 0.38"; depth 50 ; unknown ; N/A GL208729.1 samtools variation 283 283 . . . alleles " T A"; frequencies " 0.528301886792453 0.471698113207547"; depth 53 ; unknown ; N/A GL208842.1 samtools variation 164 164 . . . alleles " T C"; frequencies " 0.728813559322034 0.271186440677966"; depth 59 ; unknown ; N/A GL208842.1 samtools variation 334 334 . . . alleles " T A"; frequencies " 0.731958762886598 0.268041237113402"; depth 194 ; unknown ; N/A GL208851.1 samtools variation 359 359 . . . alleles " C G"; frequencies " 0.78125 0.21875"; depth 32 ; unknown ; N/A GL208857.1 samtools variation 202 202 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL208941.1 samtools variation 120 120 . . . alleles " A G"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL209064.1 samtools variation 195 195 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 84 ; unknown ; N/A GL209064.1 samtools variation 445 445 . . . alleles " C T"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL209133.1 samtools variation 326 326 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL209145.1 samtools variation 206 206 . . . alleles " A G"; frequencies " 0.315789473684211 0.684210526315789"; depth 19 ; unknown ; N/A GL209148.1 samtools variation 180 180 . . . alleles " T C"; frequencies " 0.735294117647059 0.264705882352941"; depth 34 ; unknown ; N/A GL209151.1 samtools variation 130 130 . . . alleles " G A"; frequencies " 0.571428571428571 0.428571428571429"; depth 28 ; unknown ; N/A GL209151.1 samtools variation 171 171 . . . alleles " T C"; frequencies " 0.538461538461538 0.461538461538462"; depth 26 ; unknown ; N/A GL209151.1 samtools variation 175 175 . . . alleles " G A"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL209151.1 samtools variation 400 400 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL209151.1 samtools variation 444 444 . . . alleles " A G"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL209211.1 samtools variation 195 195 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL209211.1 samtools variation 233 233 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL209305.1 samtools variation 125 125 . . . alleles " G A"; frequencies " 0.24 0.76"; depth 25 ; unknown ; N/A GL209305.1 samtools variation 161 161 . . . alleles " C T"; frequencies " 0.210526315789474 0.789473684210526"; depth 19 ; unknown ; N/A GL209392.1 samtools variation 182 182 . . . alleles " G A"; frequencies " 0.798319327731092 0.201680672268908"; depth 119 ; unknown ; N/A GL209392.1 samtools variation 197 197 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 143 ; unknown ; N/A GL209392.1 samtools variation 316 316 . . . alleles " G A"; frequencies " 0.785276073619632 0.214723926380368"; depth 163 ; unknown ; N/A GL209416.1 samtools variation 425 425 . . . alleles " T C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL209431.1 samtools variation 133 133 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL209431.1 samtools variation 368 368 . . . alleles " T C"; frequencies " 0.357142857142857 0.642857142857143"; depth 42 ; unknown ; N/A GL209450.1 samtools variation 71 71 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL209468.1 samtools variation 419 419 . . . alleles " A C"; frequencies " 0.36 0.64"; depth 25 ; unknown ; N/A GL209577.1 samtools variation 172 172 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; known ; N/A GL209581.1 samtools variation 353 353 . . . alleles " G A"; frequencies " 0.436974789915966 0.563025210084034"; depth 119 ; known ; N/A GL209581.1 samtools variation 414 414 . . . alleles " A C"; frequencies " 0.429824561403509 0.570175438596491"; depth 114 ; known ; N/A GL209605.1 samtools variation 183 183 . . . alleles " G C"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL209645.1 samtools variation 188 188 . . . alleles " T G"; frequencies " 0.413793103448276 0.586206896551724"; depth 58 ; unknown ; N/A GL209645.1 samtools variation 225 225 . . . alleles " A T"; frequencies " 0.39622641509434 0.60377358490566"; depth 53 ; unknown ; N/A GL209675.1 samtools variation 138 138 . . . alleles " T C"; frequencies " 0.294117647058824 0.705882352941177"; depth 17 ; unknown ; N/A GL209767.1 samtools variation 178 178 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL209767.1 samtools variation 251 251 . . . alleles " G A"; frequencies " 0.787234042553192 0.212765957446809"; depth 47 ; unknown ; N/A GL209767.1 samtools variation 397 397 . . . alleles " T C"; frequencies " 0.515789473684211 0.484210526315789"; depth 95 ; unknown ; N/A GL209804.1 samtools variation 149 149 . . . alleles " G A"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL209804.1 samtools variation 281 281 . . . alleles " C A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL209804.1 samtools variation 375 375 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 22 ; unknown ; N/A GL209850.1 samtools variation 143 143 . . . alleles " C A"; frequencies " 0.263157894736842 0.736842105263158"; depth 19 ; unknown ; N/A GL209963.1 samtools variation 418 418 . . . alleles " C A"; frequencies " 0.714285714285714 0.285714285714286"; depth 28 ; unknown ; N/A GL209983.1 samtools variation 195 195 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 25 ; unknown ; N/A GL209999.1 samtools variation 289 289 . . . alleles " T C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL210065.1 samtools variation 313 313 . . . alleles " A G"; frequencies " 0.752212389380531 0.247787610619469"; depth 113 ; unknown ; N/A GL210065.1 samtools variation 323 323 . . . alleles " A G"; frequencies " 0.324324324324324 0.675675675675676"; depth 111 ; unknown ; N/A GL210065.1 samtools variation 364 364 . . . alleles " C G"; frequencies " 0.351648351648352 0.648351648351648"; depth 91 ; unknown ; N/A GL210082.1 samtools variation 182 182 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 13 ; known ; N/A GL210125.1 samtools variation 363 363 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL210141.1 samtools variation 185 185 . . . alleles " C T"; frequencies " 0.370165745856354 0.629834254143646"; depth 181 ; unknown ; N/A GL210211.1 samtools variation 236 236 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 15 ; unknown ; N/A GL210240.1 samtools variation 397 397 . . . alleles " G A"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL210240.1 samtools variation 405 405 . . . alleles " T G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; known ; N/A GL210246.1 samtools variation 127 127 . . . alleles " T C"; frequencies " 0.307692307692308 0.692307692307692"; depth 26 ; unknown ; N/A GL210246.1 samtools variation 378 378 . . . alleles " A C"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; unknown ; N/A GL210379.1 samtools variation 210 210 . . . alleles " G C"; frequencies " 0.696969696969697 0.303030303030303"; depth 33 ; unknown ; N/A GL210379.1 samtools variation 229 229 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 38 ; unknown ; N/A GL210455.1 samtools variation 330 330 . . . alleles " C A"; frequencies " 0.285714285714286 0.714285714285714"; depth 21 ; unknown ; N/A GL210520.1 samtools variation 383 383 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL210565.1 samtools variation 230 230 . . . alleles " C T"; frequencies " 0.724137931034483 0.275862068965517"; depth 29 ; unknown ; N/A GL210565.1 samtools variation 233 233 . . . alleles " A G"; frequencies " 0.620689655172414 0.379310344827586"; depth 29 ; unknown ; N/A GL210565.1 samtools variation 267 267 . . . alleles " A G"; frequencies " 0.791666666666667 0.208333333333333"; depth 24 ; unknown ; N/A GL210565.1 samtools variation 279 279 . . . alleles " A T"; frequencies " 0.583333333333333 0.416666666666667"; depth 24 ; unknown ; N/A GL210565.1 samtools variation 429 429 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL210657.1 samtools variation 271 271 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL210812.1 samtools variation 176 176 . . . alleles " C T"; frequencies " 0.563380281690141 0.436619718309859"; depth 71 ; unknown ; N/A GL210812.1 samtools variation 236 236 . . . alleles " G T"; frequencies " 0.552941176470588 0.447058823529412"; depth 85 ; unknown ; N/A GL210812.1 samtools variation 306 306 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 33 ; unknown ; N/A GL210825.1 samtools variation 358 358 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL210825.1 samtools variation 385 385 . . . alleles " A G"; frequencies " 0.772727272727273 0.227272727272727"; depth 22 ; unknown ; N/A GL210833.1 samtools variation 253 253 . . . alleles " G A"; frequencies " 0.363636363636364 0.636363636363636"; depth 11 ; unknown ; N/A GL210850.1 samtools variation 129 129 . . . alleles " G T"; frequencies " 0.737704918032787 0.262295081967213"; depth 488 ; unknown ; N/A GL210850.1 samtools variation 159 159 . . . alleles " T G"; frequencies " 0.772425249169435 0.225913621262458"; depth 602 ; unknown ; N/A GL210904.1 samtools variation 203 203 . . . alleles " A G"; frequencies " 0.588235294117647 0.411764705882353"; depth 17 ; unknown ; N/A GL210904.1 samtools variation 271 271 . . . alleles " T C"; frequencies " 0.3125 0.4375"; depth 16 ; unknown ; N/A GL210904.1 samtools variation 291 291 . . . alleles " A C"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL210904.1 samtools variation 418 418 . . . alleles " T A"; frequencies " 0.55 0.35"; depth 20 ; unknown ; N/A GL210904.1 samtools variation 425 425 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL210911.1 samtools variation 202 202 . . . alleles " C T"; frequencies " 0.705882352941177 0.294117647058824"; depth 34 ; unknown ; N/A GL210911.1 samtools variation 254 254 . . . alleles " T G"; frequencies " 0.517241379310345 0.482758620689655"; depth 29 ; unknown ; N/A GL210911.1 samtools variation 276 276 . . . alleles " G A"; frequencies " 0.52 0.48"; depth 25 ; unknown ; N/A GL210911.1 samtools variation 307 307 . . . alleles " A G"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL210911.1 samtools variation 325 325 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 18 ; unknown ; N/A GL211084.1 samtools variation 182 182 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL211120.1 samtools variation 271 271 . . . alleles " T C"; frequencies " 0.577464788732394 0.422535211267606"; depth 71 ; unknown ; N/A GL211120.1 samtools variation 325 325 . . . alleles " A T"; frequencies " 0.618181818181818 0.381818181818182"; depth 55 ; unknown ; N/A GL211120.1 samtools variation 349 349 . . . alleles " A G"; frequencies " 0.647058823529412 0.352941176470588"; depth 34 ; unknown ; N/A GL211120.1 samtools variation 428 428 . . . alleles " C G"; frequencies " 0.444444444444444 0.555555555555556"; depth 27 ; unknown ; N/A GL211126.1 samtools variation 122 122 . . . alleles " G C"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL211331.1 samtools variation 41 41 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL211331.1 samtools variation 70 70 . . . alleles " C T"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL211331.1 samtools variation 187 187 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL211420.1 samtools variation 227 227 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL211420.1 samtools variation 231 231 . . . alleles " A G"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL211420.1 samtools variation 283 283 . . . alleles " A G"; frequencies " 0.736842105263158 0.263157894736842"; depth 19 ; unknown ; N/A GL211422.1 samtools variation 254 254 . . . alleles " T C"; frequencies " 0.421052631578947 0.578947368421053"; depth 19 ; unknown ; N/A GL211422.1 samtools variation 440 440 . . . alleles " G A"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL211493.1 samtools variation 220 220 . . . alleles " G A"; frequencies " 0.550847457627119 0.449152542372881"; depth 236 ; unknown ; N/A GL211493.1 samtools variation 234 234 . . . alleles " G A"; frequencies " 0.534328358208955 0.465671641791045"; depth 335 ; unknown ; N/A GL211493.1 samtools variation 397 397 . . . alleles " A G"; frequencies " 0.791780821917808 0.208219178082192"; depth 365 ; unknown ; N/A GL211565.1 samtools variation 193 193 . . . alleles " A G"; frequencies " 0.314285714285714 0.685714285714286"; depth 35 ; unknown ; N/A GL211574.1 samtools variation 235 235 . . . alleles " A G"; frequencies " 0.527777777777778 0.472222222222222"; depth 36 ; unknown ; N/A GL211574.1 samtools variation 240 240 . . . alleles " T G"; frequencies " 0.722222222222222 0.277777777777778"; depth 36 ; unknown ; N/A GL211688.1 samtools variation 215 215 . . . alleles " T G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL211688.1 samtools variation 365 365 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL211690.1 samtools variation 318 318 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL211690.1 samtools variation 363 363 . . . alleles " A T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL211796.1 samtools variation 320 320 . . . alleles " A G"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL211989.1 samtools variation 212 212 . . . alleles " A G"; frequencies " 0.6 0.4"; depth 155 ; unknown ; N/A GL211997.1 samtools variation 158 158 . . . alleles " T A"; frequencies " 0.206896551724138 0.793103448275862"; depth 29 ; unknown ; N/A GL211997.1 samtools variation 267 267 . . . alleles " T C"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL211997.1 samtools variation 340 340 . . . alleles " C T"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL211997.1 samtools variation 344 344 . . . alleles " T A"; frequencies " 0.466666666666667 0.533333333333333"; depth 30 ; unknown ; N/A GL212007.1 samtools variation 92 92 . . . alleles " G A"; frequencies " 0.32258064516129 0.67741935483871"; depth 31 ; unknown ; N/A GL212034.1 samtools variation 201 201 . . . alleles " C T"; frequencies " 0.583333333333333 0.416666666666667"; depth 48 ; unknown ; N/A GL212034.1 samtools variation 216 216 . . . alleles " T C"; frequencies " 0.767857142857143 0.232142857142857"; depth 56 ; unknown ; N/A GL212034.1 samtools variation 253 253 . . . alleles " A G"; frequencies " 0.509090909090909 0.490909090909091"; depth 55 ; unknown ; N/A GL212034.1 samtools variation 306 306 . . . alleles " G A"; frequencies " 0.705882352941177 0.294117647058824"; depth 17 ; unknown ; N/A GL212034.1 samtools variation 326 326 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL212170.1 samtools variation 168 168 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL212201.1 samtools variation 155 155 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL212201.1 samtools variation 328 328 . . . alleles " A G"; frequencies " 0.793103448275862 0.206896551724138"; depth 58 ; unknown ; N/A GL212201.1 samtools variation 359 359 . . . alleles " T C"; frequencies " 0.467741935483871 0.532258064516129"; depth 62 ; unknown ; N/A GL212204.1 samtools variation 274 274 . . . alleles " T C"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL212204.1 samtools variation 312 312 . . . alleles " A G"; frequencies " 0.633333333333333 0.366666666666667"; depth 30 ; unknown ; N/A GL212204.1 samtools variation 401 401 . . . alleles " T C"; frequencies " 0.611111111111111 0.388888888888889"; depth 18 ; unknown ; N/A GL212205.1 samtools variation 265 265 . . . alleles " C A"; frequencies " 0.51219512195122 0.48780487804878"; depth 41 ; unknown ; N/A GL212236.1 samtools variation 104 104 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; known ; N/A GL212236.1 samtools variation 243 243 . . . alleles " C T"; frequencies " 0.68695652173913 0.31304347826087"; depth 115 ; unknown ; N/A GL212236.1 samtools variation 325 325 . . . alleles " T G"; frequencies " 0.676190476190476 0.323809523809524"; depth 105 ; known ; N/A GL212253.1 samtools variation 301 301 . . . alleles " G A"; frequencies " 0.582278481012658 0.417721518987342"; depth 79 ; unknown ; N/A GL212253.1 samtools variation 353 353 . . . alleles " C T"; frequencies " 0.675 0.325"; depth 80 ; known ; N/A GL212253.1 samtools variation 370 370 . . . alleles " C T"; frequencies " 0.766233766233766 0.233766233766234"; depth 77 ; known ; N/A GL212309.1 samtools variation 362 362 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 24 ; unknown ; N/A GL212346.1 samtools variation 281 281 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL212389.1 samtools variation 91 91 . . . alleles " C G"; frequencies " 0.559322033898305 0.440677966101695"; depth 59 ; unknown ; N/A GL212389.1 samtools variation 96 96 . . . alleles " C A"; frequencies " 0.661016949152542 0.338983050847458"; depth 59 ; unknown ; N/A GL212389.1 samtools variation 223 223 . . . alleles " C T"; frequencies " 0.544117647058823 0.455882352941176"; depth 68 ; unknown ; N/A GL212389.1 samtools variation 283 283 . . . alleles " C A"; frequencies " 0.409090909090909 0.590909090909091"; depth 66 ; unknown ; N/A GL212502.1 samtools variation 279 279 . . . alleles " T C"; frequencies " 0.736842105263158 0.263157894736842"; depth 38 ; unknown ; N/A GL212550.1 samtools variation 208 208 . . . alleles " A G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL212630.1 samtools variation 144 144 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL212794.1 samtools variation 182 182 . . . alleles " C T"; frequencies " 0.644444444444444 0.355555555555556"; depth 45 ; unknown ; N/A GL212794.1 samtools variation 189 189 . . . alleles " G C"; frequencies " 0.644444444444444 0.355555555555556"; depth 45 ; unknown ; N/A GL212794.1 samtools variation 241 241 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL212971.1 samtools variation 77 77 . . . alleles " T G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL213039.1 samtools variation 110 110 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL213042.1 samtools variation 88 88 . . . alleles " G A"; frequencies " 0.744897959183674 0.255102040816327"; depth 98 ; unknown ; N/A GL213042.1 samtools variation 299 299 . . . alleles " T C"; frequencies " 0.692307692307692 0.307692307692308"; depth 65 ; unknown ; N/A GL213042.1 samtools variation 320 320 . . . alleles " T C"; frequencies " 0.696428571428571 0.303571428571429"; depth 56 ; known ; N/A GL213146.1 samtools variation 164 164 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL213177.1 samtools variation 171 171 . . . alleles " C T"; frequencies " 0.465116279069767 0.534883720930233"; depth 43 ; unknown ; N/A GL213177.1 samtools variation 310 310 . . . alleles " G A"; frequencies " 0.617647058823529 0.382352941176471"; depth 34 ; unknown ; N/A GL213204.1 samtools variation 106 106 . . . alleles " T C"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL213269.1 samtools variation 276 276 . . . alleles " A C"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL213316.1 samtools variation 268 268 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL213319.1 samtools variation 166 166 . . . alleles " T C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL213319.1 samtools variation 193 193 . . . alleles " C T"; frequencies " 0.7 0.3"; depth 20 ; unknown ; N/A GL213319.1 samtools variation 259 259 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL213373.1 samtools variation 70 70 . . . alleles " C T"; frequencies " 0.779661016949153 0.220338983050847"; depth 59 ; unknown ; N/A GL213373.1 samtools variation 145 145 . . . alleles " T C"; frequencies " 0.78448275862069 0.21551724137931"; depth 116 ; unknown ; N/A GL213373.1 samtools variation 246 246 . . . alleles " T C"; frequencies " 0.584905660377358 0.415094339622642"; depth 159 ; unknown ; N/A GL213373.1 samtools variation 264 264 . . . alleles " A C"; frequencies " 0.733812949640288 0.266187050359712"; depth 139 ; unknown ; N/A GL213373.1 samtools variation 353 353 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 168 ; unknown ; N/A GL213434.1 samtools variation 169 169 . . . alleles " A C"; frequencies " 0.620481927710843 0.379518072289157"; depth 332 ; unknown ; N/A GL213434.1 samtools variation 170 170 . . . alleles " T G"; frequencies " 0.629969418960245 0.370030581039755"; depth 327 ; unknown ; N/A GL213434.1 samtools variation 226 226 . . . alleles " A G"; frequencies " 0.616197183098592 0.383802816901408"; depth 568 ; unknown ; N/A GL213434.1 samtools variation 229 229 . . . alleles " A C"; frequencies " 0.615658362989324 0.384341637010676"; depth 562 ; unknown ; N/A GL213434.1 samtools variation 297 297 . . . alleles " C T"; frequencies " 0.452702702702703 0.547297297297297"; depth 296 ; unknown ; N/A GL213434.1 samtools variation 348 348 . . . alleles " G C"; frequencies " 0.5625 0.4375"; depth 256 ; unknown ; N/A GL213434.1 samtools variation 353 353 . . . alleles " T G"; frequencies " 0.551867219917012 0.448132780082988"; depth 241 ; unknown ; N/A GL213488.1 samtools variation 208 208 . . . alleles " T C"; frequencies " 0.375 0.625"; depth 56 ; unknown ; N/A GL213488.1 samtools variation 269 269 . . . alleles " A G"; frequencies " 0.784313725490196 0.215686274509804"; depth 51 ; unknown ; N/A GL213488.1 samtools variation 274 274 . . . alleles " C T"; frequencies " 0.51063829787234 0.48936170212766"; depth 47 ; unknown ; N/A GL213488.1 samtools variation 360 360 . . . alleles " A C"; frequencies " 0.8 0.2"; depth 45 ; unknown ; N/A GL213488.1 samtools variation 376 376 . . . alleles " G A"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; N/A GL213491.1 samtools variation 173 173 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL213491.1 samtools variation 174 174 . . . alleles " G T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL213510.1 samtools variation 205 205 . . . alleles " C A"; frequencies " 0.3125 0.6875"; depth 16 ; unknown ; N/A GL213616.1 samtools variation 134 134 . . . alleles " C G"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; unknown ; N/A GL213616.1 samtools variation 269 269 . . . alleles " A G"; frequencies " 0.443181818181818 0.556818181818182"; depth 88 ; unknown ; N/A GL213616.1 samtools variation 338 338 . . . alleles " T C"; frequencies " 0.585365853658537 0.414634146341463"; depth 41 ; unknown ; N/A GL213616.1 samtools variation 341 341 . . . alleles " T A"; frequencies " 0.463414634146341 0.536585365853659"; depth 41 ; unknown ; N/A GL213648.1 samtools variation 177 177 . . . alleles " A G"; frequencies " 0.777777777777778 0.222222222222222"; depth 45 ; unknown ; N/A GL213658.1 samtools variation 234 234 . . . alleles " G C"; frequencies " 0.2 0.8"; depth 25 ; unknown ; N/A GL213676.1 samtools variation 89 89 . . . alleles " C T"; frequencies " 0.728395061728395 0.271604938271605"; depth 81 ; unknown ; N/A GL213676.1 samtools variation 228 228 . . . alleles " G A"; frequencies " 0.290909090909091 0.709090909090909"; depth 55 ; unknown ; N/A GL213676.1 samtools variation 326 326 . . . alleles " A G"; frequencies " 0.306122448979592 0.683673469387755"; depth 98 ; unknown ; N/A GL213703.1 samtools variation 168 168 . . . alleles " C G"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL213703.1 samtools variation 201 201 . . . alleles " C A"; frequencies " 0.375 0.625"; depth 24 ; unknown ; N/A GL213773.1 samtools variation 162 162 . . . alleles " C G"; frequencies " 0.426470588235294 0.573529411764706"; depth 68 ; unknown ; N/A GL213773.1 samtools variation 196 196 . . . alleles " T G"; frequencies " 0.753246753246753 0.246753246753247"; depth 77 ; unknown ; N/A GL213809.1 samtools variation 118 118 . . . alleles " A G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL213809.1 samtools variation 155 155 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; unknown ; N/A GL213901.1 samtools variation 87 87 . . . alleles " A G"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL213901.1 samtools variation 107 107 . . . alleles " G T"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL213901.1 samtools variation 270 270 . . . alleles " G A"; frequencies " 0.645161290322581 0.354838709677419"; depth 31 ; unknown ; N/A GL213901.1 samtools variation 277 277 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 36 ; unknown ; N/A GL213901.1 samtools variation 316 316 . . . alleles " C T"; frequencies " 0.594594594594595 0.405405405405405"; depth 37 ; known ; N/A GL213930.1 samtools variation 126 126 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; known ; N/A GL213930.1 samtools variation 326 326 . . . alleles " G A"; frequencies " 0.75 0.25"; depth 20 ; known ; N/A GL213979.1 samtools variation 261 261 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL213987.1 samtools variation 333 333 . . . alleles " T C"; frequencies " 0.219512195121951 0.780487804878049"; depth 41 ; unknown ; N/A GL214083.1 samtools variation 195 195 . . . alleles " T C"; frequencies " 0.772151898734177 0.227848101265823"; depth 79 ; unknown ; N/A GL214083.1 samtools variation 289 289 . . . alleles " A G"; frequencies " 0.575342465753425 0.424657534246575"; depth 73 ; unknown ; N/A GL214083.1 samtools variation 427 427 . . . alleles " T C"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL214347.1 samtools variation 129 129 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL214408.1 samtools variation 206 206 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL214408.1 samtools variation 216 216 . . . alleles " G C"; frequencies " 0.352941176470588 0.647058823529412"; depth 17 ; unknown ; N/A GL214408.1 samtools variation 259 259 . . . alleles " C T"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL214414.1 samtools variation 272 272 . . . alleles " G T"; frequencies " 0.272727272727273 0.727272727272727"; depth 11 ; unknown ; N/A GL214414.1 samtools variation 341 341 . . . alleles " G A"; frequencies " 0.230769230769231 0.769230769230769"; depth 13 ; unknown ; N/A GL214414.1 samtools variation 361 361 . . . alleles " T A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL214420.1 samtools variation 89 89 . . . alleles " C T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL214427.1 samtools variation 118 118 . . . alleles " G A"; frequencies " 0.4375 0.5625"; depth 16 ; known ; N/A GL214427.1 samtools variation 362 362 . . . alleles " C T"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; known ; N/A GL214450.1 samtools variation 207 207 . . . alleles " C T"; frequencies " 0.363636363636364 0.636363636363636"; depth 22 ; unknown ; N/A GL214450.1 samtools variation 325 325 . . . alleles " C T"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL214483.1 samtools variation 311 311 . . . alleles " C A"; frequencies " 0.317073170731707 0.544715447154472"; depth 123 ; unknown ; N/A GL214483.1 samtools variation 329 329 . . . alleles " G A"; frequencies " 0.560344827586207 0.439655172413793"; depth 116 ; unknown ; N/A GL214510.1 samtools variation 183 183 . . . alleles " A G"; frequencies " 0.58695652173913 0.41304347826087"; depth 92 ; unknown ; N/A GL214524.1 samtools variation 126 126 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 50 ; unknown ; N/A GL214632.1 samtools variation 174 174 . . . alleles " G A"; frequencies " 0.596153846153846 0.403846153846154"; depth 52 ; unknown ; N/A GL214798.1 samtools variation 322 322 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL214798.1 samtools variation 339 339 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL214844.1 samtools variation 318 318 . . . alleles " T C"; frequencies " 0.6875 0.3125"; depth 16 ; unknown ; N/A GL214844.1 samtools variation 326 326 . . . alleles " A G"; frequencies " 0.5625 0.4375"; depth 16 ; known ; N/A GL214904.1 samtools variation 109 109 . . . alleles " G A"; frequencies " 0.326530612244898 0.673469387755102"; depth 49 ; unknown ; N/A GL214904.1 samtools variation 230 230 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 27 ; unknown ; N/A GL214904.1 samtools variation 244 244 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 48 ; unknown ; N/A GL214904.1 samtools variation 270 270 . . . alleles " T C"; frequencies " 0.536585365853659 0.463414634146341"; depth 41 ; unknown ; N/A GL215010.1 samtools variation 78 78 . . . alleles " A G"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL215196.1 samtools variation 314 314 . . . alleles " C A"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL215238.1 samtools variation 312 312 . . . alleles " A G"; frequencies " 0.711538461538462 0.288461538461538"; depth 104 ; unknown ; N/A GL215277.1 samtools variation 298 298 . . . alleles " C T"; frequencies " 0.4 0.6"; depth 10 ; unknown ; N/A GL215335.1 samtools variation 292 292 . . . alleles " C T"; frequencies " 0.461538461538462 0.538461538461538"; depth 26 ; unknown ; N/A GL215482.1 samtools variation 103 103 . . . alleles " A G"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL215653.1 samtools variation 104 104 . . . alleles " G A"; frequencies " 0.68 0.32"; depth 25 ; unknown ; non-synonymous GL215663.1 samtools variation 266 266 . . . alleles " A G"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL215663.1 samtools variation 299 299 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL215738.1 samtools variation 109 109 . . . alleles " G A"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL215829.1 samtools variation 211 211 . . . alleles " A C"; frequencies " 0.279329608938547 0.720670391061452"; depth 179 ; unknown ; N/A GL215854.1 samtools variation 224 224 . . . alleles " T C"; frequencies " 0.654761904761905 0.345238095238095"; depth 84 ; unknown ; N/A GL215854.1 samtools variation 303 303 . . . alleles " T C"; frequencies " 0.673469387755102 0.326530612244898"; depth 49 ; unknown ; N/A GL215951.1 samtools variation 149 149 . . . alleles " C G"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL215951.1 samtools variation 215 215 . . . alleles " C G"; frequencies " 0.6 0.4"; depth 65 ; known ; N/A GL215968.1 samtools variation 225 225 . . . alleles " A G"; frequencies " 0.794117647058823 0.205882352941176"; depth 34 ; unknown ; N/A GL216035.1 samtools variation 174 174 . . . alleles " G T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL216054.1 samtools variation 218 218 . . . alleles " G T"; frequencies " 0.40625 0.59375"; depth 32 ; unknown ; N/A GL216093.1 samtools variation 302 302 . . . alleles " A G"; frequencies " 0.217391304347826 0.782608695652174"; depth 23 ; known ; N/A GL216195.1 samtools variation 242 242 . . . alleles " A C"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; unknown ; N/A GL216195.1 samtools variation 328 328 . . . alleles " A G"; frequencies " 0.357142857142857 0.642857142857143"; depth 14 ; unknown ; N/A GL216232.1 samtools variation 322 322 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL216240.1 samtools variation 74 74 . . . alleles " T C"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL216270.1 samtools variation 176 176 . . . alleles " G A"; frequencies " 0.233333333333333 0.766666666666667"; depth 30 ; unknown ; N/A GL216270.1 samtools variation 226 226 . . . alleles " G A"; frequencies " 0.6 0.4"; depth 30 ; unknown ; N/A GL216270.1 samtools variation 250 250 . . . alleles " T A"; frequencies " 0.75 0.25"; depth 24 ; unknown ; N/A GL216270.1 samtools variation 305 305 . . . alleles " T C"; frequencies " 0.4375 0.5625"; depth 32 ; unknown ; N/A GL216462.1 samtools variation 249 249 . . . alleles " C A"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL216541.1 samtools variation 179 179 . . . alleles " A G"; frequencies " 0.64 0.36"; depth 25 ; unknown ; N/A GL216549.1 samtools variation 175 175 . . . alleles " T C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL216566.1 samtools variation 117 117 . . . alleles " G A"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL216566.1 samtools variation 157 157 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL216566.1 samtools variation 196 196 . . . alleles " C T"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL216566.1 samtools variation 197 197 . . . alleles " A G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; unknown ; N/A GL216578.1 samtools variation 286 286 . . . alleles " G A"; frequencies " 0.333333333333333 0.666666666666667"; depth 33 ; unknown ; N/A GL216578.1 samtools variation 302 302 . . . alleles " T C"; frequencies " 0.636363636363636 0.363636363636364"; depth 33 ; unknown ; N/A GL216675.1 samtools variation 216 216 . . . alleles " C A"; frequencies " 0.691756272401434 0.290322580645161"; depth 279 ; unknown ; N/A GL216675.1 samtools variation 279 279 . . . alleles " C T"; frequencies " 0.715686274509804 0.284313725490196"; depth 204 ; unknown ; N/A GL216717.1 samtools variation 107 107 . . . alleles " A C"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL216717.1 samtools variation 144 144 . . . alleles " G A"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL216772.1 samtools variation 189 189 . . . alleles " T C"; frequencies " 0.590909090909091 0.409090909090909"; depth 22 ; unknown ; N/A GL216772.1 samtools variation 197 197 . . . alleles " C T"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL216772.1 samtools variation 198 198 . . . alleles " G A"; frequencies " 0.454545454545455 0.545454545454545"; depth 22 ; unknown ; N/A GL216784.1 samtools variation 302 302 . . . alleles " A G"; frequencies " 0.296296296296296 0.703703703703704"; depth 27 ; known ; N/A GL216804.1 samtools variation 290 290 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 15 ; unknown ; N/A GL216810.1 samtools variation 170 170 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; known ; N/A GL216851.1 samtools variation 330 330 . . . alleles " G A"; frequencies " 0.614285714285714 0.385714285714286"; depth 70 ; known ; N/A GL217052.1 samtools variation 75 75 . . . alleles " C A"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL217087.1 samtools variation 296 296 . . . alleles " A T"; frequencies " 0.642857142857143 0.357142857142857"; depth 28 ; unknown ; N/A GL217117.1 samtools variation 126 126 . . . alleles " T G"; frequencies " 0.545454545454545 0.454545454545455"; depth 11 ; known ; N/A GL217181.1 samtools variation 159 159 . . . alleles " G A"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL217230.1 samtools variation 152 152 . . . alleles " A G"; frequencies " 0.487179487179487 0.512820512820513"; depth 39 ; unknown ; N/A GL217230.1 samtools variation 227 227 . . . alleles " A G"; frequencies " 0.71875 0.28125"; depth 32 ; unknown ; N/A GL217270.1 samtools variation 253 253 . . . alleles " A G"; frequencies " 0.730061349693252 0.269938650306748"; depth 163 ; unknown ; N/A GL217562.1 samtools variation 94 94 . . . alleles " G A"; frequencies " 0.555555555555556 0.444444444444444"; depth 27 ; unknown ; N/A GL217587.1 samtools variation 237 237 . . . alleles " T C"; frequencies " 0.230769230769231 0.769230769230769"; depth 65 ; unknown ; N/A GL217587.1 samtools variation 268 268 . . . alleles " T C"; frequencies " 0.790697674418605 0.209302325581395"; depth 43 ; unknown ; N/A GL217587.1 samtools variation 284 284 . . . alleles " T A"; frequencies " 0.542857142857143 0.457142857142857"; depth 35 ; unknown ; N/A GL217587.1 samtools variation 322 322 . . . alleles " A G"; frequencies " 0.472222222222222 0.527777777777778"; depth 36 ; unknown ; N/A GL217737.1 samtools variation 269 269 . . . alleles " T G"; frequencies " 0.695238095238095 0.304761904761905"; depth 105 ; unknown ; N/A GL217751.1 samtools variation 133 133 . . . alleles " C T"; frequencies " 0.636363636363636 0.363636363636364"; depth 11 ; unknown ; N/A GL217751.1 samtools variation 211 211 . . . alleles " C A"; frequencies " 0.692307692307692 0.230769230769231"; depth 13 ; unknown ; N/A GL217785.1 samtools variation 214 214 . . . alleles " T G"; frequencies " 0.380952380952381 0.619047619047619"; depth 21 ; known ; N/A GL217859.1 samtools variation 205 205 . . . alleles " G C"; frequencies " 0.40625 0.59375"; depth 32 ; unknown ; N/A GL217942.1 samtools variation 126 126 . . . alleles " T C"; frequencies " 0.333333333333333 0.666666666666667"; depth 21 ; unknown ; N/A GL217942.1 samtools variation 225 225 . . . alleles " T C"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL217948.1 samtools variation 157 157 . . . alleles " A G"; frequencies " 0.78125 0.21875"; depth 96 ; unknown ; N/A GL218230.1 samtools variation 151 151 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL218230.1 samtools variation 265 265 . . . alleles " G A"; frequencies " 0.615384615384615 0.384615384615385"; depth 13 ; unknown ; N/A GL218353.1 samtools variation 90 90 . . . alleles " C G"; frequencies " 0.346153846153846 0.615384615384615"; depth 26 ; unknown ; N/A GL218353.1 samtools variation 213 213 . . . alleles " G A"; frequencies " 0.580645161290323 0.419354838709677"; depth 31 ; unknown ; N/A GL218371.1 samtools variation 85 85 . . . alleles " G A"; frequencies " 0.410810810810811 0.589189189189189"; depth 185 ; unknown ; N/A GL218371.1 samtools variation 89 89 . . . alleles " T C"; frequencies " 0.56020942408377 0.43979057591623"; depth 191 ; unknown ; N/A GL218371.1 samtools variation 274 274 . . . alleles " G A"; frequencies " 0.292452830188679 0.707547169811321"; depth 106 ; unknown ; N/A GL218412.1 samtools variation 164 164 . . . alleles " G T"; frequencies " 0.25 0.75"; depth 20 ; unknown ; N/A GL218419.1 samtools variation 252 252 . . . alleles " G A"; frequencies " 0.727272727272727 0.272727272727273"; depth 22 ; unknown ; N/A GL218419.1 samtools variation 257 257 . . . alleles " A G"; frequencies " 0.428571428571429 0.571428571428571"; depth 21 ; unknown ; N/A GL218438.1 samtools variation 195 195 . . . alleles " T C"; frequencies " 0.523809523809524 0.476190476190476"; depth 21 ; unknown ; N/A GL218563.1 samtools variation 79 79 . . . alleles " C G"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL218563.1 samtools variation 139 139 . . . alleles " C A"; frequencies " 0.767441860465116 0.232558139534884"; depth 43 ; unknown ; N/A GL218568.1 samtools variation 195 195 . . . alleles " A G"; frequencies " 0.728813559322034 0.271186440677966"; depth 59 ; unknown ; N/A GL218639.1 samtools variation 190 190 . . . alleles " T C"; frequencies " 0.741116751269036 0.258883248730964"; depth 197 ; unknown ; N/A GL218804.1 samtools variation 231 231 . . . alleles " G A"; frequencies " 0.632352941176471 0.367647058823529"; depth 68 ; unknown ; N/A GL218840.1 samtools variation 214 214 . . . alleles " A G"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; unknown ; N/A GL218859.1 samtools variation 245 245 . . . alleles " G A"; frequencies " 0.761904761904762 0.238095238095238"; depth 21 ; unknown ; N/A GL218859.1 samtools variation 254 254 . . . alleles " G C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL218859.1 samtools variation 265 265 . . . alleles " G A"; frequencies " 0.434782608695652 0.565217391304348"; depth 23 ; unknown ; N/A GL218887.1 samtools variation 215 215 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 28 ; unknown ; N/A GL218887.1 samtools variation 242 242 . . . alleles " A G"; frequencies " 0.764705882352941 0.235294117647059"; depth 17 ; unknown ; N/A GL218999.1 samtools variation 103 103 . . . alleles " T C"; frequencies " 0.5 0.5"; depth 70 ; known ; N/A GL218999.1 samtools variation 236 236 . . . alleles " C T"; frequencies " 0.634146341463415 0.365853658536585"; depth 41 ; known ; N/A GL218999.1 samtools variation 244 244 . . . alleles " T C"; frequencies " 0.709677419354839 0.290322580645161"; depth 31 ; known ; N/A GL219043.1 samtools variation 329 329 . . . alleles " T G"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL219311.1 samtools variation 180 180 . . . alleles " T C"; frequencies " 0.666666666666667 0.285714285714286"; depth 21 ; unknown ; N/A GL219381.1 samtools variation 232 232 . . . alleles " T A"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL219444.1 samtools variation 204 204 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL219600.1 samtools variation 105 105 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 24 ; unknown ; N/A GL219600.1 samtools variation 247 247 . . . alleles " G C"; frequencies " 0.738255033557047 0.261744966442953"; depth 149 ; unknown ; N/A GL219700.1 samtools variation 267 267 . . . alleles " A G"; frequencies " 0.433333333333333 0.566666666666667"; depth 30 ; unknown ; N/A GL219803.1 samtools variation 157 157 . . . alleles " G A"; frequencies " 0.482758620689655 0.517241379310345"; depth 29 ; unknown ; N/A GL219803.1 samtools variation 319 319 . . . alleles " G A"; frequencies " 0.478260869565217 0.521739130434783"; depth 23 ; unknown ; N/A GL219881.1 samtools variation 157 157 . . . alleles " C T"; frequencies " 0.785714285714286 0.214285714285714"; depth 14 ; unknown ; N/A GL219957.1 samtools variation 170 170 . . . alleles " T G"; frequencies " 0.461538461538462 0.538461538461538"; depth 13 ; unknown ; N/A GL219957.1 samtools variation 245 245 . . . alleles " G A"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL220011.1 samtools variation 151 151 . . . alleles " A G"; frequencies " 0.788732394366197 0.211267605633803"; depth 71 ; unknown ; N/A GL220038.1 samtools variation 114 114 . . . alleles " C T"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL220038.1 samtools variation 115 115 . . . alleles " G A"; frequencies " 0.678571428571429 0.321428571428571"; depth 28 ; unknown ; N/A GL220405.1 samtools variation 181 181 . . . alleles " G A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL220488.1 samtools variation 77 77 . . . alleles " T C"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL220488.1 samtools variation 174 174 . . . alleles " A G"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL220544.1 samtools variation 174 174 . . . alleles " C T"; frequencies " 0.702564102564103 0.297435897435897"; depth 195 ; unknown ; N/A GL220615.1 samtools variation 236 236 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 15 ; unknown ; N/A GL220735.1 samtools variation 163 163 . . . alleles " C A"; frequencies " 0.5 0.5"; depth 14 ; unknown ; N/A GL220893.1 samtools variation 120 120 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL221060.1 samtools variation 166 166 . . . alleles " C T"; frequencies " 0.722222222222222 0.277777777777778"; depth 18 ; unknown ; N/A GL221062.1 samtools variation 97 97 . . . alleles " C T"; frequencies " 0.719298245614035 0.280701754385965"; depth 57 ; unknown ; N/A GL221062.1 samtools variation 192 192 . . . alleles " C T"; frequencies " 0.549019607843137 0.450980392156863"; depth 51 ; unknown ; N/A GL221062.1 samtools variation 198 198 . . . alleles " C T"; frequencies " 0.612244897959184 0.387755102040816"; depth 49 ; unknown ; N/A GL221062.1 samtools variation 220 220 . . . alleles " G T"; frequencies " 0.476190476190476 0.523809523809524"; depth 42 ; unknown ; N/A GL221096.1 samtools variation 122 122 . . . alleles " C T"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL221096.1 samtools variation 181 181 . . . alleles " T C"; frequencies " 0.518518518518518 0.481481481481481"; depth 27 ; unknown ; N/A GL221096.1 samtools variation 254 254 . . . alleles " A G"; frequencies " 0.695652173913043 0.304347826086957"; depth 23 ; unknown ; N/A GL221229.1 samtools variation 154 154 . . . alleles " T C"; frequencies " 0.545454545454545 0.454545454545455"; depth 33 ; unknown ; N/A GL221299.1 samtools variation 171 171 . . . alleles " C T"; frequencies " 0.385454545454545 0.614545454545455"; depth 275 ; unknown ; N/A GL221299.1 samtools variation 217 217 . . . alleles " A C"; frequencies " 0.373456790123457 0.626543209876543"; depth 324 ; unknown ; N/A GL221343.1 samtools variation 104 104 . . . alleles " A C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL221343.1 samtools variation 177 177 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 20 ; unknown ; N/A GL221348.1 samtools variation 105 105 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL221469.1 samtools variation 107 107 . . . alleles " C T"; frequencies " 0.762962962962963 0.237037037037037"; depth 135 ; unknown ; N/A GL221738.1 samtools variation 156 156 . . . alleles " G A"; frequencies " 0.681818181818182 0.318181818181818"; depth 22 ; unknown ; N/A GL221827.1 samtools variation 162 162 . . . alleles " G C"; frequencies " 0.638888888888889 0.361111111111111"; depth 36 ; unknown ; N/A GL221827.1 samtools variation 200 200 . . . alleles " A T"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL221890.1 samtools variation 168 168 . . . alleles " T C"; frequencies " 0.708333333333333 0.291666666666667"; depth 24 ; unknown ; N/A GL221954.1 samtools variation 51 51 . . . alleles " G A"; frequencies " 0.754385964912281 0.245614035087719"; depth 57 ; known ; N/A GL221954.1 samtools variation 63 63 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 70 ; known ; N/A GL222100.1 samtools variation 165 165 . . . alleles " A G"; frequencies " 0.444444444444444 0.555555555555556"; depth 18 ; unknown ; N/A GL222100.1 samtools variation 174 174 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL222100.1 samtools variation 208 208 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL222100.1 samtools variation 212 212 . . . alleles " C T"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL222157.1 samtools variation 268 268 . . . alleles " T G"; frequencies " 0.649350649350649 0.347402597402597"; depth 308 ; unknown ; N/A GL222170.1 samtools variation 109 109 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL222173.1 samtools variation 94 94 . . . alleles " G A"; frequencies " 0.537313432835821 0.462686567164179"; depth 67 ; unknown ; N/A GL222173.1 samtools variation 148 148 . . . alleles " G A"; frequencies " 0.743243243243243 0.256756756756757"; depth 74 ; unknown ; N/A GL222212.1 samtools variation 160 160 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL222396.1 samtools variation 164 164 . . . alleles " C T"; frequencies " 0.672131147540984 0.327868852459016"; depth 61 ; unknown ; N/A GL222396.1 samtools variation 202 202 . . . alleles " C T"; frequencies " 0.666666666666667 0.333333333333333"; depth 33 ; unknown ; N/A GL222420.1 samtools variation 135 135 . . . alleles " A C"; frequencies " 0.75 0.25"; depth 20 ; unknown ; N/A GL222488.1 samtools variation 78 78 . . . alleles " T C"; frequencies " 0.481481481481481 0.518518518518518"; depth 27 ; unknown ; N/A GL222506.1 samtools variation 140 140 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 33 ; unknown ; N/A GL222734.1 samtools variation 98 98 . . . alleles " G T"; frequencies " 0.521739130434783 0.478260869565217"; depth 23 ; unknown ; N/A GL222936.1 samtools variation 205 205 . . . alleles " C A"; frequencies " 0.550724637681159 0.449275362318841"; depth 69 ; unknown ; N/A GL222936.1 samtools variation 221 221 . . . alleles " G A"; frequencies " 0.582089552238806 0.417910447761194"; depth 67 ; unknown ; N/A GL222972.1 samtools variation 110 110 . . . alleles " C G"; frequencies " 0.8 0.2"; depth 20 ; unknown ; N/A GL222977.1 samtools variation 91 91 . . . alleles " G C"; frequencies " 0.66 0.34"; depth 50 ; unknown ; N/A GL222977.1 samtools variation 138 138 . . . alleles " C T"; frequencies " 0.709090909090909 0.290909090909091"; depth 55 ; unknown ; N/A GL223013.1 samtools variation 150 150 . . . alleles " C T"; frequencies " 0.631578947368421 0.368421052631579"; depth 19 ; unknown ; N/A GL223058.1 samtools variation 93 93 . . . alleles " G A"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL223058.1 samtools variation 171 171 . . . alleles " G A"; frequencies " 0.483870967741935 0.516129032258065"; depth 31 ; unknown ; N/A GL223328.1 samtools variation 103 103 . . . alleles " A C"; frequencies " 0.306122448979592 0.693877551020408"; depth 49 ; unknown ; N/A GL223390.1 samtools variation 104 104 . . . alleles " A G"; frequencies " 0.655172413793103 0.344827586206897"; depth 29 ; unknown ; N/A GL223583.1 samtools variation 179 179 . . . alleles " A G"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; known ; N/A GL223641.1 samtools variation 133 133 . . . alleles " A T"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL223654.1 samtools variation 194 194 . . . alleles " C T"; frequencies " 0.533333333333333 0.466666666666667"; depth 15 ; known ; N/A GL223997.1 samtools variation 15 15 . . . alleles " G T"; frequencies " 0.545454545454545 0.454545454545455"; depth 154 ; unknown ; N/A GL223997.1 samtools variation 254 254 . . . alleles " A G"; frequencies " 0.563559322033898 0.436440677966102"; depth 236 ; unknown ; N/A GL224157.1 samtools variation 153 153 . . . alleles " C T"; frequencies " 0.321428571428571 0.678571428571429"; depth 28 ; unknown ; N/A GL224201.1 samtools variation 208 208 . . . alleles " C T"; frequencies " 0.416666666666667 0.583333333333333"; depth 12 ; unknown ; N/A GL224301.1 samtools variation 177 177 . . . alleles " C T"; frequencies " 0.277777777777778 0.722222222222222"; depth 18 ; unknown ; N/A GL224301.1 samtools variation 184 184 . . . alleles " G A"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL224307.1 samtools variation 153 153 . . . alleles " G C"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL224414.1 samtools variation 129 129 . . . alleles " C T"; frequencies " 0.75 0.25"; depth 12 ; unknown ; N/A GL224414.1 samtools variation 132 132 . . . alleles " A T"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL224577.1 samtools variation 160 160 . . . alleles " T A"; frequencies " 0.333333333333333 0.666666666666667"; depth 18 ; unknown ; N/A GL224747.1 samtools variation 45 45 . . . alleles " A G"; frequencies " 0.686274509803922 0.313725490196078"; depth 102 ; unknown ; N/A GL224747.1 samtools variation 86 86 . . . alleles " G A"; frequencies " 0.684210526315789 0.315789473684211"; depth 133 ; unknown ; N/A GL224747.1 samtools variation 182 182 . . . alleles " C G"; frequencies " 0.664516129032258 0.335483870967742"; depth 155 ; unknown ; N/A GL224747.1 samtools variation 213 213 . . . alleles " G T"; frequencies " 0.709876543209877 0.290123456790123"; depth 162 ; unknown ; N/A GL225169.1 samtools variation 142 142 . . . alleles " C T"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL225228.1 samtools variation 136 136 . . . alleles " A G"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL225228.1 samtools variation 140 140 . . . alleles " T C"; frequencies " 0.742857142857143 0.257142857142857"; depth 35 ; unknown ; N/A GL225228.1 samtools variation 218 218 . . . alleles " G A"; frequencies " 0.62962962962963 0.37037037037037"; depth 27 ; unknown ; N/A GL225233.1 samtools variation 53 53 . . . alleles " A G"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL225370.1 samtools variation 140 140 . . . alleles " C T"; frequencies " 0.684210526315789 0.315789473684211"; depth 19 ; unknown ; N/A GL225400.1 samtools variation 185 185 . . . alleles " C T"; frequencies " 0.494929006085193 0.505070993914807"; depth 493 ; unknown ; N/A GL225582.1 samtools variation 91 91 . . . alleles " A G"; frequencies " 0.653846153846154 0.346153846153846"; depth 26 ; unknown ; N/A GL225602.1 samtools variation 157 157 . . . alleles " T C"; frequencies " 0.4 0.6"; depth 30 ; unknown ; N/A GL225602.1 samtools variation 226 226 . . . alleles " T G"; frequencies " 0.5 0.5"; depth 12 ; unknown ; N/A GL225643.1 samtools variation 141 141 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 12 ; unknown ; N/A GL225643.1 samtools variation 193 193 . . . alleles " G C"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL225927.1 samtools variation 80 80 . . . alleles " A G"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL226409.1 samtools variation 144 144 . . . alleles " T C"; frequencies " 0.8 0.2"; depth 15 ; unknown ; N/A GL226505.1 samtools variation 42 42 . . . alleles " C T"; frequencies " 0.751578947368421 0.248421052631579"; depth 475 ; unknown ; N/A GL226563.1 samtools variation 113 113 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL226592.1 samtools variation 121 121 . . . alleles " C T"; frequencies " 0.388888888888889 0.611111111111111"; depth 18 ; unknown ; N/A GL226736.1 samtools variation 96 96 . . . alleles " C T"; frequencies " 0.53030303030303 0.46969696969697"; depth 66 ; unknown ; N/A GL226910.1 samtools variation 172 172 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL227033.1 samtools variation 157 157 . . . alleles " T A"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL227172.1 samtools variation 100 100 . . . alleles " A C"; frequencies " 0.55 0.45"; depth 20 ; unknown ; N/A GL227295.1 samtools variation 27 27 . . . alleles " T A"; frequencies " 0.454545454545455 0.545454545454545"; depth 11 ; unknown ; N/A GL227295.1 samtools variation 39 39 . . . alleles " A G"; frequencies " 0.65 0.35"; depth 20 ; unknown ; N/A GL227295.1 samtools variation 71 71 . . . alleles " C T"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; N/A GL227380.1 samtools variation 126 126 . . . alleles " A G"; frequencies " 0.439024390243902 0.560975609756098"; depth 41 ; unknown ; N/A GL227408.1 samtools variation 102 102 . . . alleles " A G"; frequencies " 0.756032171581769 0.243967828418231"; depth 373 ; unknown ; N/A GL227408.1 samtools variation 127 127 . . . alleles " T C"; frequencies " 0.735941320293399 0.264058679706601"; depth 409 ; unknown ; N/A GL227450.1 samtools variation 45 45 . . . alleles " G A"; frequencies " 0.671428571428571 0.328571428571429"; depth 140 ; unknown ; N/A GL227450.1 samtools variation 55 55 . . . alleles " A C"; frequencies " 0.53804347826087 0.46195652173913"; depth 184 ; unknown ; N/A GL227450.1 samtools variation 118 118 . . . alleles " C T"; frequencies " 0.470817120622568 0.330739299610895"; depth 257 ; unknown ; N/A GL227450.1 samtools variation 198 198 . . . alleles " C T"; frequencies " 0.567567567567568 0.432432432432432"; depth 296 ; unknown ; N/A GL228177.1 samtools variation 63 63 . . . alleles " G T"; frequencies " 0.378787878787879 0.621212121212121"; depth 66 ; unknown ; N/A GL228177.1 samtools variation 72 72 . . . alleles " C T"; frequencies " 0.625 0.375"; depth 72 ; unknown ; N/A GL228306.1 samtools variation 98 98 . . . alleles " G C"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL228508.1 samtools variation 33 33 . . . alleles " A G"; frequencies " 0.5 0.5"; depth 12 ; known ; N/A GL228508.1 samtools variation 131 131 . . . alleles " G C"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL228508.1 samtools variation 151 151 . . . alleles " G A"; frequencies " 0.538461538461538 0.461538461538462"; depth 13 ; unknown ; N/A GL228685.1 samtools variation 89 89 . . . alleles " A G"; frequencies " 0.3125 0.6875"; depth 32 ; unknown ; N/A GL228917.1 samtools variation 214 214 . . . alleles " T A"; frequencies " 0.666666666666667 0.333333333333333"; depth 12 ; unknown ; N/A GL229159.1 samtools variation 123 123 . . . alleles " C A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL229659.1 samtools variation 76 76 . . . alleles " C T"; frequencies " 0.63265306122449 0.36734693877551"; depth 49 ; unknown ; N/A GL229659.1 samtools variation 85 85 . . . alleles " C T"; frequencies " 0.73469387755102 0.26530612244898"; depth 49 ; unknown ; N/A GL229659.1 samtools variation 151 151 . . . alleles " G A"; frequencies " 0.714285714285714 0.285714285714286"; depth 56 ; unknown ; N/A GL229659.1 samtools variation 182 182 . . . alleles " C G"; frequencies " 0.595238095238095 0.404761904761905"; depth 42 ; unknown ; N/A GL229806.1 samtools variation 52 52 . . . alleles " T C"; frequencies " 0.777777777777778 0.222222222222222"; depth 18 ; unknown ; N/A GL229806.1 samtools variation 90 90 . . . alleles " A C"; frequencies " 0.744186046511628 0.255813953488372"; depth 43 ; unknown ; N/A GL229821.1 samtools variation 130 130 . . . alleles " C T"; frequencies " 0.638297872340426 0.361702127659574"; depth 47 ; unknown ; N/A GL229934.1 samtools variation 139 139 . . . alleles " A G"; frequencies " 0.789473684210526 0.210526315789474"; depth 19 ; unknown ; N/A GL230423.1 samtools variation 143 143 . . . alleles " G A"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL230799.1 samtools variation 164 164 . . . alleles " C T"; frequencies " 0.733333333333333 0.266666666666667"; depth 15 ; unknown ; N/A GL230799.1 samtools variation 185 185 . . . alleles " A G"; frequencies " 0.571428571428571 0.428571428571429"; depth 14 ; known ; N/A GL231254.1 samtools variation 123 123 . . . alleles " C T"; frequencies " 0.647058823529412 0.352941176470588"; depth 17 ; unknown ; N/A GL231325.1 samtools variation 61 61 . . . alleles " C T"; frequencies " 0.692307692307692 0.307692307692308"; depth 13 ; unknown ; N/A GL231325.1 samtools variation 112 112 . . . alleles " A T"; frequencies " 0.583333333333333 0.416666666666667"; depth 12 ; unknown ; N/A GL231402.1 samtools variation 90 90 . . . alleles " A C"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL231579.1 samtools variation 104 104 . . . alleles " A G"; frequencies " 0.782608695652174 0.217391304347826"; depth 23 ; unknown ; N/A GL231689.1 samtools variation 139 139 . . . alleles " G A"; frequencies " 0.769230769230769 0.230769230769231"; depth 13 ; unknown ; N/A GL232459.1 samtools variation 67 67 . . . alleles " A G"; frequencies " 0.596153846153846 0.403846153846154"; depth 52 ; unknown ; N/A GL233097.1 samtools variation 178 178 . . . alleles " A G"; frequencies " 0.541899441340782 0.458100558659218"; depth 179 ; unknown ; N/A GL233726.1 samtools variation 119 119 . . . alleles " A G"; frequencies " 0.7 0.3"; depth 10 ; unknown ; N/A GL233739.1 samtools variation 85 85 . . . alleles " C T"; frequencies " 0.5 0.5"; depth 10 ; unknown ; N/A GL233966.1 samtools variation 88 88 . . . alleles " A G"; frequencies " 0.727272727272727 0.272727272727273"; depth 11 ; unknown ; N/A GL234901.1 samtools variation 88 88 . . . alleles " C G"; frequencies " 0.5625 0.4375"; depth 64 ; unknown ; N/A GL234901.1 samtools variation 147 147 . . . alleles " G A"; frequencies " 0.488372093023256 0.511627906976744"; depth 43 ; unknown ; N/A GL235417.1 samtools variation 124 124 . . . alleles " T G"; frequencies " 0.333333333333333 0.666666666666667"; depth 15 ; unknown ; N/A GL235418.1 samtools variation 104 104 . . . alleles " A G"; frequencies " 0.584905660377358 0.415094339622642"; depth 106 ; unknown ; N/A GL235717.1 samtools variation 69 69 . . . alleles " G A"; frequencies " 0.634146341463415 0.365853658536585"; depth 82 ; unknown ; N/A GL235975.1 samtools variation 72 72 . . . alleles " T G"; frequencies " 0.628571428571429 0.371428571428571"; depth 35 ; unknown ; non-synonymous GL235975.1 samtools variation 123 123 . . . alleles " A G"; frequencies " 0.608695652173913 0.391304347826087"; depth 23 ; unknown ; synonymous GL235975.1 samtools variation 124 124 . . . alleles " C T"; frequencies " 0.652173913043478 0.347826086956522"; depth 23 ; unknown ; non-synonymous GL236528.1 samtools variation 90 90 . . . alleles " C T"; frequencies " 0.659340659340659 0.340659340659341"; depth 91 ; unknown ; N/A GL236691.1 samtools variation 143 143 . . . alleles " A C"; frequencies " 0.714285714285714 0.285714285714286"; depth 14 ; unknown ; N/A GL236693.1 samtools variation 108 108 . . . alleles " A G"; frequencies " 0.75 0.25"; depth 16 ; unknown ; N/A GL236842.1 samtools variation 77 77 . . . alleles " G A"; frequencies " 0.476190476190476 0.523809523809524"; depth 21 ; unknown ; N/A GL236842.1 samtools variation 95 95 . . . alleles " C G"; frequencies " 0.391304347826087 0.608695652173913"; depth 23 ; unknown ; N/A GL239769.1 samtools variation 116 116 . . . alleles " T C"; frequencies " 0.466666666666667 0.533333333333333"; depth 15 ; unknown ; N/A GL241146.1 samtools variation 51 51 . . . alleles " T A"; frequencies " 0.780487804878049 0.219512195121951"; depth 41 ; unknown ; N/A GL241234.1 samtools variation 61 61 . . . alleles " A C"; frequencies " 0.758620689655172 0.241379310344828"; depth 58 ; unknown ; N/A GL242906.1 samtools variation 63 63 . . . alleles " C T"; frequencies " 0.5625 0.4375"; depth 16 ; unknown ; N/A GL242906.1 samtools variation 79 79 . . . alleles " T C"; frequencies " 0.555555555555556 0.444444444444444"; depth 18 ; unknown ; N/A GL243093.1 samtools variation 104 104 . . . alleles " T C"; frequencies " 0.48 0.52"; depth 25 ; unknown ; N/A GL243397.1 samtools variation 88 88 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A GL246098.1 samtools variation 60 60 . . . alleles " G A"; frequencies " 0.5 0.5"; depth 16 ; unknown ; N/A GL247412.1 samtools variation 52 52 . . . alleles " A G"; frequencies " 0.642857142857143 0.357142857142857"; depth 14 ; unknown ; N/A GL252624.1 samtools variation 67 67 . . . alleles " A C"; frequencies " 0.346534653465347 0.653465346534653"; depth 101 ; unknown ; N/A GL262045.1 samtools variation 90 90 . . . alleles " C T"; frequencies " 0.6 0.4"; depth 10 ; unknown ; N/A chrM samtools variation 368 368 . . . alleles " A G"; frequencies " 0.703517587939699 0.296482412060302"; depth 796 ; unknown ; N/A chrM samtools variation 6728 6728 . . . alleles " G A"; frequencies " 0.70064874884152 0.298887859128823"; depth 2158 ; unknown ; N/A chrM samtools variation 6770 6770 . . . alleles " G A"; frequencies " 0.698450536352801 0.301549463647199"; depth 2517 ; unknown ; N/A chrM samtools variation 7118 7118 . . . alleles " C T"; frequencies " 0.279309518101175 0.720450731239511"; depth 4171 ; unknown ; N/A chrM samtools variation 8751 8751 . . . alleles " T C"; frequencies " 0.652471709350804 0.347528290649196"; depth 3358 ; unknown ; N/A chrM samtools variation 9228 9228 . . . alleles " A G"; frequencies " 0.790148177813376 0.209851822186624"; depth 2497 ; unknown ; N/A chrM samtools variation 9818 9818 . . . alleles " T C"; frequencies " 0.772646248582077 0.227353751417923"; depth 6171 ; unknown ; N/A chrM samtools variation 10803 10803 . . . alleles " C T"; frequencies " 0.470686767169179 0.529313232830821"; depth 1194 ; unknown ; N/A chrM samtools variation 11108 11108 . . . alleles " T C"; frequencies " 0.236607142857143 0.763392857142857"; depth 2240 ; unknown ; N/A chrM samtools variation 11390 11390 . . . alleles " G A"; frequencies " 0.26792085630879 0.73207914369121"; depth 3083 ; unknown ; N/A chrM samtools variation 11455 11455 . . . alleles " C T"; frequencies " 0.278073510773131 0.721926489226869"; depth 3945 ; unknown ; N/A chrM samtools variation 11632 11632 . . . alleles " A T"; frequencies " 0.785197368421053 0.214802631578947"; depth 3040 ; unknown ; N/A chrM samtools variation 12303 12303 . . . alleles " T C"; frequencies " 0.383457402812241 0.616377171215881"; depth 6045 ; unknown ; N/A chrM samtools variation 12678 12678 . . . alleles " G A"; frequencies " 0.782743524261219 0.217256475738781"; depth 5482 ; unknown ; N/A chrM samtools variation 13129 13129 . . . alleles " C T"; frequencies " 0.693211488250653 0.306788511749347"; depth 1532 ; unknown ; N/A chrM samtools variation 13131 13131 . . . alleles " T C"; frequencies " 0.33311125916056 0.66688874083944"; depth 1501 ; unknown ; N/A chrM samtools variation 13955 13955 . . . alleles " C T"; frequencies " 0.295962629295963 0.704037370704037"; depth 2997 ; unknown ; N/A chrM samtools variation 14446 14446 . . . alleles " C T"; frequencies " 0.340444184687317 0.659555815312683"; depth 3422 ; unknown ; N/A chrM samtools variation 14857 14857 . . . alleles " C T"; frequencies " 0.350649350649351 0.649350649350649"; depth 1694 ; unknown ; N/A chrM samtools variation 15069 15069 . . . alleles " G A"; frequencies " 0.305280147567443 0.694258704173392"; depth 4337 ; unknown ; N/A chrM samtools variation 16004 16004 . . . alleles " A G"; frequencies " 0.689019503072402 0.310980496927598"; depth 3743 ; unknown ; N/A chrM samtools variation 16380 16380 . . . alleles " T C"; frequencies " 0.350754508649246 0.648877438351123"; depth 5434 ; unknown ; N/A