File name: Fig3_Loci.20_Sim.01.tar.gz File type: Compressed folder Investigation: Gruenstaeudl M, Reid NM, Wheeler GL, Carstens BC. Posterior Predictive Checks of Coalescent Models: P2C2M, an R package Date: 28-Jan-2015 Maintainer: Michael Gruenstaeudl This readme file describes the files contained in the compressed folder "Fig3_Loci.20_Sim.01.tar.gz". The contained files are part of the data underlying Figure 3 (columnspace 'N of loci: 20') of the above investigation and were simulated under the multispecies coalescent model using a total of 20 genes. The files were generated with BEAUTi (Drummond et al. 2012) and *BEAST (Heled & Drummond 2010), respectively. The uncompressed folder constitutes the direct input for the R package P2C2M. The following files are included: 1) "Fig3_Loci.20_Sim.01.xml" This is the XML-formatted metadata file generated by BEAUTi. It was run in *BEAST to generate the gene genealogy and species tree files listed below. 2) "gene001.trees", "gene002.trees", ... , "gene020.trees" These are the gene genealogy files for each of the 20 genes under study. They contain the gene genealogies as sampled by *BEAST from MCMC runs. Note that the tree generations across the gene genealogy files and the species tree file are identical and arranged in the same order. 3) "species.trees" This is the species tree file based the 20 genes under study. It contains the species trees sampled by *BEAST from MCMC runs. References: Drummond AJ, Suchard MA, Xie D, Rambaut A (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology & Evolution, 29, 1969-1973. Heled J, Drummond AJ (2010) Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution, 27, 570-580.