LOCUS ICP1_Gp88_E-->A_cat_dead 3177 bp DNA linear PHG 07-JUL-2011 DEFINITION Vibrio phage ICP1, complete genome. ACCESSION HQ641347 VERSION HQ641347.1 GI:323512361 KEYWORDS . SOURCE Vibrio phage ICP1 (unknown) ORGANISM Vibrio phage ICP1 Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae. REFERENCE 1 (bases 1 to 125956) AUTHORS Seed,K.D., Bodi,K.L., Kropinski,A.M., Ackermann,H.W., Calderwood,S.B., Qadri,F. and Camilli,A. TITLE Evidence of a dominant lineage of Vibrio cholerae-specific lytic bacteriophages shed by cholera patients over a 10-year period in Dhaka, Bangladesh JOURNAL MBio 2 (1), E00334-10 (2011) PUBMED 21304168 REFERENCE 2 (bases 1 to 125956) AUTHORS Seed,K.D., Kropinski,A.M. and Camilli,A. TITLE Direct Submission JOURNAL Submitted (22-NOV-2010) Molecular Biology and Microbiology, Howard Hughes Medical Institute and Tufts University School of Medicine, 136 Harrison Avenue, Boston, MA 02111, USA FEATURES Location/Qualifiers CDS complement(1..426) /gene="ORF90" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ADX87906.1" /db_xref="GI:323512451" /translation="MFKHLIVLVILVLSASVYAKCPVEEVIYTPHWRENFTRFPAAER LYVVQKIDRGDFTILVLDGLQMVILGYKEEFNNIRKGVAMSKIAGEYFGRIDVDLGLT DLSGFPVDKEVWIPITVKDLRDMCSSEAAKDSFWVHRQK" gene complement(1..426) /gene="ORF90" source complement(<1..>3177) /organism="Vibrio phage ICP1" /mol_type="genomic DNA" /host="Vibrio cholerae" /db_xref="taxon:979525" CDS complement(547..1275) /gene="ORF89" /note="similar to YP_001425627.1 phage associated-antirepressor in Bacillus virus 1. protein motifs ANTin pfam03374; Bro-Nin pfam02498; COG3617, prophage antirepressor" /codon_start=1 /transl_table=11 /product="putative antirepressor protein" /protein_id="ADX87905.1" /db_xref="GI:323512450" /translation="MKNEAHKFDHQVFGELQVVVYEDKPHFIANEVSDILGYKQHKDG RAHCKSLIKLSLPDLRKLGLESLATNPQGIIICPEKDVYRMVMRSNLPKAEEFQDWVM EEVLPTIRKTGGFVSDVDQIIDTFYKDEKEDIKAIIRASLVFRKENQHKIDFANDVTE TVGWQDMNSVAKVLGLGRNTLFRYLREIGILMDNNLPYQQYITQGYFRVNPVTKYGRQ FNVTLVSGKGEVWIHKKLKEHNLI" gene complement(547..1275) /gene="ORF89" regulatory 1395..1423 /regulatory_class="promoter" /note="Porf88; similar to consensus Escherichia coli sigma70 promoter TTGACA[N15-17]TATAAT" CDS 1454..2134 /gene="ORF88" /note="similar to YP_002876595.1 hypothetical protein VCD_000839 in Vibrio cholerae MJ-1236" /codon_start=1 /transl_table=11 /product="conserved hypothetical protein" /protein_id="ADX87904.1" /db_xref="GI:323512449" /translation="MIQEKDKYVVASVTILESNQATNTSTGEVIQITPEMKCVYFYMR EKYCMSIKYNNKYTESWESIVATVAPMSGQKLKKLSKALRDIGLVITLSKKDSSKQVV DVCDVEGWVFSNDKQHRKTVIDYLYVINFKKDGCIKVGRSFDVEKRTRQLLRVSNHKQ DEIDILAVYTGTHQEVYDTEQRIHEELARGGYYHNDSDWSVETFDPDCENVLFHLLDK SGLSEGAW" gene 1454..2134 /gene="ORF88" primer 1640..1660 /label="primer" primer complement(1972..1991) /label="KS1344" primer 1972..2015 /label="KS1343" mutation 1992..1993 /label="cg" CDS 2293..2751 /gene="ORF87" /note="similar to NP_944893.1 phage conserved protein in Enterobacteria phage Felix 01" /codon_start=1 /transl_table=11 /product="conserved hypothetical protein" /protein_id="ADX87903.1" /db_xref="GI:323512448" /translation="MKALEKADLFYGYHQMQQSHYSGFNYPDLAAILSAGSSTANIPA RPIFDIMQPLVKVNTTKFKTALRGYLTNLKGKPTKSIDDIGKAFWEEFRPTFNLVMGN EAYLTANSEGVKRQKLLDGADPNKPLYWTGDFAKHMSYFKNNTLVYSNNG" gene 2293..2751 /gene="ORF87" primer 2360..2378 /label="primer" CDS 2757..3176 /gene="ORF86" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ADX87902.1" /db_xref="GI:323512447" /translation="MAQWKLVKEKVAYLKVETKLPATWHNGVLVQPPPTITYQSFPCL WEPFDPDEAELLPSGVKTTEAKWLFTEKLLKTWDDATTNSTKADIIYFADPSKATGKK PQAYEVWRAEEWIENDGFLLLDNTQHDYVVIKEGRLK" gene 2757..3176 /gene="ORF86" CDS 3176..>3177 /gene="ORF85" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ADX87901.1" /db_xref="GI:323512446" /translation="MWNIQSIPFDPVQRCRTIAEAIGEVVPDLLGSLTVSSNSYKIDL TDITTPATYTLDTEVMDLDTGVTAVVNLTFTSIGTETVDELYTALVDTFSAATPLLYF STNLDFTLDVGKYFTLAAKEGVGFVQGITVSPNITITEELVAAPIGKPAAYMQYGKQP ICQYPLIVVTPILHEEHNSVYGKGSIEVDGVQRPYVEAYIKMRVSVRCESGDYQQVLT NGTPSAGYILNQFKRRIQYDNHRQTFFEKVNASIQKDITITPVPVIDGLNHMDASTTI IEFDLIDRYIEMQGGALYAVEVKQGKFFIDKTQVMDNKERTIARPDYIP" gene 3176..>3177 /gene="ORF85" ORIGIN 1 TTATTTTTGT CTATGCACCC AAAAACTGTC TTTTGCAGCC TCGGATGAGC ACATATCTCT 61 CAGATCCTTT ACTGTAATAG GGATCCATAC TTCTTTATCC ACAGGAAAAC CGGATAAATC 121 TGTTAATCCT AAGTCTACAT CAATTCTTCC GAAATACTCC CCTGCAATCT TGCTCATTGC 181 AACACCTTTT CGGATATTAT TAAACTCTTC TTTATATCCT AGGATTACCA TCTGCAAACC 241 ATCAAGTACG AGGATTGTAA AATCCCCTCT GTCAATCTTC TGCACAACAT ATAATCTTTC 301 TGCCGCAGGA AATCTTGTAA AATTTTCTCG CCAATGAGGA GTATAGATCA CCTCCTCTAC 361 AGGACATTTG GCGTAAACTG AAGCACTAAG TACCAAAATA ACAAGCACTA TTAAATGTTT 421 AAACATATCA TCTCTCCTAA TCTGGTTGAT GTGTATATAC TAAGGCAGGA GAGGTTTCTT 481 GTCAATATAA ATTTTAATTT TTCATAAAAT AAAACCCTCT GCACCAGAAG ATGAGAGGGT 541 TGGGTGTTAG ATTAAGTTAT GTTCCTTAAG TTTCTTATGG ATCCATACCT CACCTTTACC 601 AGATACCAGT GTTACATTGA ATTGTCTACC ATATTTGGTT ACAGGGTTGA CTCTAAAATA 661 ACCTTGTGTG ATATATTGCT GGTAAGGTAA GTTGTTATCC ATGAGGATAC CGATTTCACG 721 CAAATATCTA AACAAGGTAT TCCGACCCAG ACCTAGTACT TTAGCTACAG AATTCATATC 781 TTGCCATCCT ACAGTTTCCG TAACATCGTT TGCGAAATCA ATTTTATGTT GATTTTCTTT 841 CCTGAATACA AGACTTGCTC GGATGATAGC CTTAATATCT TCCTTTTCAT CTTTATAAAA 901 GGTGTCAATA ATCTGATCGA CATCAGATAC AAAACCTCCA GTTTTGCGGA TGGTTGGAAG 961 TACTTCTTCC ATAACCCAAT CTTGAAACTC CTCTGCTTTC GGGAGATTAC TTCGCATTAC 1021 CATACGATAC ACATCTTTTT CTGGGCAGAT GATAATGCCT TGTGGATTGG TAGCCAAACT 1081 TTCCAAACCC AGCTTTCGTA AATCGGGTAA GCTAAGTTTA ATCAATGACT TACAGTGAGC 1141 CCTTCCGTCT TTATGTTGCT TGTAACCAAG AATATCCGAA ACTTCATTAG CAATAAAGTG 1201 AGGTTTATCT TCATAGACGA CCACCTGCAA CTCGCCGAAA ACTTGGTGAT CAAACTTGTG 1261 TGCTTCATTT TTCATACACT TCTCCTTTAT TAAAATCTTA TAAATGCAAG AGGACATCTC 1321 TCGCACACAC CAATACTATC ACAAGAGAAT ACACTGTCAA CATAAATTTT AAATTATTTT 1381 GCAAATGGTA TGTGTTGACA ACGGGAGTTG TCGGAGGTAT GATTCGGGAT ATGAAATTAT 1441 TGGAGGAAAC AATATGATTC AAGAAAAAGA TAAGTACGTA GTAGCTTCTG TTACTATCCT 1501 CGAATCTAAC CAAGCCACCA ACACCTCAAC TGGTGAAGTT ATTCAAATCA CCCCAGAAAT 1561 GAAGTGTGTG TACTTCTACA TGCGTGAAAA ATATTGCATG AGCATCAAGT ATAATAACAA 1621 ATACACCGAG AGTTGGGAAA GTATTGTTGC TACTGTTGCC CCAATGTCTG GCCAGAAACT 1681 CAAGAAGTTG TCTAAGGCAC TACGCGACAT TGGTTTAGTC ATTACATTAT CTAAAAAAGA 1741 TTCTTCTAAA CAGGTTGTTG ATGTGTGTGA TGTTGAAGGT TGGGTGTTCT CAAATGATAA 1801 ACAGCACAGA AAGACTGTGA TTGATTATTT ATATGTTATT AACTTCAAGA AAGATGGTTG 1861 TATTAAAGTA GGTCGCAGTT TCGATGTAGA GAAACGAACC AGACAATTAC TTAGAGTTTC 1921 TAACCATAAA CAGGATGAAA TCGATATTCT AGCCGTCTAC ACAGGTACTC ACCAAGAAGT 1981 TTATGACACG GCGCAAAGGA TCCATGAAGA ACTCGCTAGG GGTGGGTATT ACCACAATGA 2041 TTCTGATTGG TCGGTGGAGA CATTTGATCC TGACTGTGAA AATGTACTAT TCCACCTTTT 2101 AGACAAATCA GGTTTATCTG AAGGGGCGTG GTAAGGATAA ATAACCTTCC AAATGGGAGG 2161 TTTTCTTCTT TGTGTGTAAC TCCTGAATAT AATATGTTAT AATTACTACA TGAAGAAGAA 2221 TGAATGTGAT TATTTATGTT TGTACTAAAA TTCACGGAAC TAGAAAACCA CATTGCTGAG 2281 CTAGAAAGGC GAATAAAAGC TTTGGAAAAA GCTGACTTAT TTTACGGTTA CCACCAAATG 2341 CAGCAATCCC ACTACTCCGG TTTTAACTAC CCCGATCTCG CCGCAATACT TTCTGCAGGT 2401 AGCTCTACAG CCAACATACC TGCCCGTCCA ATTTTTGACA TAATGCAACC TTTGGTTAAG 2461 GTTAATACCA CTAAGTTTAA AACTGCATTA CGAGGGTATT TAACCAATTT AAAAGGTAAG 2521 CCTACCAAGA GTATTGATGA TATTGGTAAA GCGTTTTGGG AAGAGTTCCG ACCAACTTTT 2581 AACCTTGTAA TGGGGAATGA AGCTTACCTT ACTGCAAACA GTGAAGGTGT AAAAAGGCAG 2641 AAGTTATTAG ATGGTGCAGA TCCGAACAAA CCACTATATT GGACAGGCGA CTTTGCTAAA 2701 CACATGTCCT ACTTCAAAAA CAACACTTTA GTGTATAGTA ACAACGGGTA AAATTTATGG 2761 CACAATGGAA ATTAGTTAAA GAGAAGGTAG CATACTTAAA AGTAGAAACA AAACTACCTG 2821 CAACGTGGCA CAATGGCGTA CTGGTACAAC CACCACCTAC GATCACATAT CAATCCTTTC 2881 CATGTTTGTG GGAACCATTC GATCCTGATG AAGCTGAACT ATTGCCATCC GGTGTTAAAA 2941 CAACCGAGGC AAAGTGGCTA TTTACAGAAA AGTTATTAAA AACTTGGGAC GATGCAACAA 3001 CCAATAGTAC AAAAGCTGAC ATCATTTATT TTGCAGATCC GAGTAAAGCT ACAGGTAAAA 3061 AACCACAAGC GTATGAAGTT TGGCGTGCTG AAGAGTGGAT AGAAAATGAT GGATTTTTAT 3121 TGCTGGATAA CACACAGCAC GATTATGTTG TAATTAAGGA AGGACGGTTA AAATAAT //