# robust-coalescent-design Code for examining Fisher experimental design for coalescent processes. Reproduces (in raw form) plots in the manuscript 'Robust Design for Coalescent Model Inference' by KV Parag and OG Pybus: https://www.biorxiv.org/content/early/2018/07/23/317438 The code is freely available on the GitHub repository: https://github.com/kpzoo/robust-coalescent-design/tree/master 1) The ellipseFish.m produces design (uncertainty) ellipses for 2 parameter skyline coalescent processes. 2) The probSampleSquare.m examines a square wave robust design problem as detailed in the supporting text of the manuscript. 3) All other m files are dependencies. 4) Code depends on intpartitions and notBoxPlot packages from Matlab file exchange. Included here as subfolders. These packages are at: https://uk.mathworks.com/matlabcentral/fileexchange/26508-notboxplot and https://uk.mathworks.com/matlabcentral/fileexchange/33616-integer-partitions