molecular_evolution > all_importin-alphas_nucleotides.fasta This is the alignment used to make the gene tree (Figure 3). > pop_gen This folder contains all the sequences used in the population genetic analyses, separated by locus. > transcriptome_sequence_differences This folder contains the data used to perform the analysis of sequence differences within the transcriptome reads: the vcf file of variant sites and then the fasta files of ST and SR specific transcripts. > Ka-Ks This folder contains the sequences used in the Ka/Ks analysis and the output of that analysis transcriptome_assemblies This folder contains the three assemblies used in this paper: 1. joint assembly made from all ST and SR testes and carcass reads 2. ST-only assembly made from ST testes and carcass reads only 3. SR-only assembly made from SR testes and carcass reads only testes_RUVg_DESeq2_summary.csv is the differential expression analysis output of DESeq2 with some additional information added