This directory contains the annotations we produced for our final assemblies. Fasta files of genes (transcripts) and proteins are in the final_fastas directory. GFF files (referenced on the pre-NCBI-submission coordinates, see 01_assembly directory) are in the final_gffs directory. Scripts, logs, and related files are in the scripts directory. Files are named using six letter species codes corresponding to the following species: aptHaa Apteryx haastii aptOwe Apteryx owenii aptRow Apteryx rowi casCas Casuarius casuarius cryCin Crypturellus cinnamomeus droNov Dromaius novaehollandiae eudEle Eudromia elegans notPer Nothoprocta perdicaria rheAme Rhea americana rhePen Rhea pennata strCam Struthio camelus tinGut Tinamus guttatus