This directory contains data related to the analysis of conserved non-coding elements. The datasets tarball contains alignments and scripts used to produce alignments for three datasets: 1) original (including moa plus the whole genome alignment species) -- version 1 is prior to damage correction of the moa genome, version 2 is after damage correct 2) reduced (whole genome alignment species only, excluding moa) 3) expanded (the original dataset v2 plus cormorants) See readmes in the datasets subdirectory for further details about producing these input files. The phyloAcc_results tarball contains raw output files from PhyloAcc for each of the datasets described above, plus phyloP outputs for the original_v1 dataset The scripts tarball contains scripts and some intermediate output files. See included readmes for details. The processed_results tarball contains processed outputs from analysis of the phyloAcc results. See included readme for details.