This data accompany manuscript "Macroevolutionary foundations of a recently-evolved innate immune defence". The folder contains the raw data only (the code for data analysis can be found at FigShare - doi: 10.6084/m9.figshare.12619367 and at Zenodo - doi: 10.5281/zenodo.5137001): > fish fib datab FINAL.xls = data on articles collected during the literature search on peritoneal fibrosis in fishes > fish fibro data.txt = data from the comparative experiment on fish peritoneal fibrosis Annotation of the files: "fish fib datab FINAL.xls"
--- PLEASE NOTE that the empty cells in the database are deliberate as they allow for more straightforward exploration of the data --- No ... number in the database Authors ... list of authors Year ... year published Title ... article title Abstract ... article abstract (or link to it) dataset ...which string recovered the article (1 - (parasit*) AND (fibro*) AND ((teleost) OR (fish)); 2 - (fibrosis AND (fish OR teleost) NOT (human))) suitable ... suitable? (yes/no/DD - data deficient = could not find more info with Google Scholar) (see the MS for further details) fibrosis ... fibrosis present position ... localization in fish body (viscera, other, multiple) tissue ... which organ or tissue (bone, brain, gas bladder, gills, gonad, gut, heart, kidney, liver, mouth, multiple, muscle, ovary, peritoneum, skin, spleen, testes, thyroid) peritoneal fib ... articles with signs of peritoneal fibrosis in fish marked with 'x' (relevant text in the abstract is highlighted with red font color) cause ... what was the main cause (disease - unkown infection, parasite - determined, tox - environmental, treat - treatment, tumour, unknown) capsule ... formation of capsule env ... where the fish came from (FW - fresh water, MA - marine, BR - brackish, MIX - species from diff. env., DD - data deficient) fish species ... Latin name of fish species teleost group ... order according to Hughes et al. 2018 parasite ... parasite genus in articles with parasitic infections par clade ... clade of parasites notes ... specific notes Journal ... article journal Vol ... volume of the journal Iss ... issue of the journal Pages ... page number range of the article in the journal DOI ... digital object identifier number PubMed ... PubMed ID "fish fibro data.txt" No ... number of individual species ... species short common name inspno ... individual number within species TR ... treatment (c - control/PBS, w - tapeworm homogenate, a - Alum) Wtot ... total live fish weight LVLfibR ... fibrosis level scored from the right flank LVLfibL ... fibrosis level scored from the left flank (the site of the injection) sex ... individual sex (j - juvenile, jf - juvenile female, jm- juvenile male, f - female, m - male, un - unidentified) Wdiss ... fish weight after internal organs were removed