TopStrand_FinalReport and AB_Finalreport files contain the original data exported from GenomeStudio in two different formats. In the data files RIMPA means Z. mays ssp. parviglumis and RIMME Z. mays ssp. mexicana. The next four numbers refer to the population. Numbers after the period refer to an individual. E.g. RIMPA0156.12 and RIMPA0156.3 are two individuals from the same population, but RIMPA0156.12 and RIMPA0148.12 are two individuals from two different populations. 36719_SNPs.txt contains a list of 36719 SNP names that were used in final analysis. SampleInfo.txt lists population IDs, names and subspecies.