Phylogenetic tree reconstructions from all data treatments. See the Methods section in the paper for details about the different data treatments. Trees are presented in the same order as found in Table 2 of the paper, with single gene trees added to the end of this file. The number before each tree file name indicates the page on which that tree was pubished in Additional file 2 of the paper (the numbering of the tree files begins with "03"). Abbreviations: MB = MrBayes; ML = maximum likelihood. Tree file: 03_Dorylomorph83_ACTG_MB.tre Description: 83 taxa (all taxa), ACTG coding, MB Tree file: 04_Dorylomorph83_ACTG_MLBS.tre Description: 83 taxa (all taxa), ACTG coding, ML bootstraps Tree file: 05_Dorylomorph83_ACTG_ML.tre Description: 83 taxa (all taxa), ACTG coding, ML best tree Tree file: 06_Dorylomorph83_allRY_MB.tre Description: 83 taxa (all taxa), full RY coding, MB Tree file: 07_Dorylomorph83_allRY_MLBS.tre Description: 83 taxa (all taxa), full RY coding, ML bootstraps Tree file: 08_Dorylomorph83_partRY_MB.tre Description: 83 taxa (all taxa), partial RY coding, MB Tree file: 09_Dorylomorph83_partRY_MLBS.tre Description: 83 taxa (all taxa), partial RY coding, ML bootstraps Tree file: 10_Dorylomorph83_NOpos3_MB.tre Description: 83 taxa (all taxa), third codon positions excluded, MB Tree file: 11_Dorylomorph83_NOpos3_MLBS.tre Description: 83 taxa (all taxa), third codon positions excluded, ML bootstraps Tree file: 12_BEAST_200Mgens_40Mburn.tre Description: 83 taxa (all taxa), ACTG coding, BEAST (chronogram) Tree file: 13_Dorylomorph83_codon_MLBS.tre Description: 83 taxa (all taxa), codon model, ML bootstraps Tree file: 14_Dorylomorph83_codon_ML.tre Description: 83 taxa (all taxa), codon model, ML best tree Tree file: 15_Dorylomorph79_ACTG_MB.tre Description: 79 taxa (excluding 4 wildcard taxa), ACTG coding, MB Tree file: 16_Dorylomorph79_ACTG_MLBS.tre Description: 79 taxa (excluding 4 wildcard taxa), ACTG coding, ML bootstraps Tree file: 17_Dorylomorph79_allRY_MB.tre Description: 79 taxa (excluding 4 wildcard taxa), full RY coding, MB Tree file: 18_Dorylomorph79_allRY_MLBS.tre Description: 79 taxa (excluding 4 wildcard taxa), full RY coding, ML bootstraps Tree file: 19_Dorylomorph79_partRY_MB.tre Description: 79 taxa (excluding 4 wildcard taxa), partial RY coding, MB Tree file: 20_Dorylomorph79_partRY_MLBS.tre Description: 79 taxa (excluding 4 wildcard taxa), partial RY coding, ML bootstraps Tree file: 21_Dorylomorph79_NOpos3_MB.tre Description: 79 taxa (excluding 4 wildcard taxa), third codon positions excluded, MB Tree file: 22_Dorylomorph79_NOpos3_MLBS.tre Description: 79 taxa (excluding 4 wildcard taxa), third codon positions excluded, ML bootstraps Tree file: 23_Dorylomorph79_codon_MLBS.tre Description: 79 taxa (excluding 4 wildcard taxa), codon model, ML bootstraps Tree file: 24_Dorylomorph73_ACTG_MB.tre Description: 73 taxa (ingroup only), ACTG coding, MB Tree file: 25_Dorylomorph73_allRY_MB.tre Description: 73 taxa (ingroup only), full RY coding, MB Tree file: 26_Dorylomorph69_ACTG_MB.tre Description: 69 taxa (ingroup only and excluding 4 wildcard taxa ), ACTG coding, MB Tree file: 27_Dorylomorph69_allRY_MB.tre Description: 69 taxa (ingroup only and excluding 4 wildcard taxa), full RY coding, MB Tree file: 28_Dorylomorph68_ACTG_MB.tre Description: 68 taxa (excluding army ants), ACTG coding, MB Tree file: 29_Dorylomorph83x18S_MB.tre Description: 83 taxa (all taxa), ACTG coding, 18S only, MB Tree file: 30_Dorylomorph83x28S_MB.tre Description: 83 taxa (all taxa), ACTG coding, 28S only, MB Tree file: 31_Dorylomorph83xAA_MB.tre Description: 83 taxa (all taxa), ACTG coding, abdA only, MB Tree file: 32_Dorylomorph83xAK_MB.tre Description: 83 taxa (all taxa), ACTG coding, argK only, MB Tree file: 33_Dorylomorph83xCAD_MB.tre Description: 83 taxa (all taxa), ACTG coding, CAD only, MB Tree file: 34_Dorylomorph83xEF1aF1_MB.tre Description: 83 taxa (all taxa), ACTG coding, EF1aF1 only, MB Tree file: 35_Dorylomorph83xEF1aF2_MB.tre Description: 83 taxa (all taxa), ACTG coding, EF1aF2 only, MB Tree file: 36_Dorylomorph83xLR_MB.tre Description: 83 taxa (all taxa), ACTG coding, LWRh only, MB Tree file: 37_Dorylomorph83xTP_MB.tre Description: 83 taxa (all taxa), ACTG coding, Top1 only, MB Tree file: 38_Dorylomorph83xUB_MB.tre Description: 83 taxa (all taxa), ACTG coding, Ubx only, MB Tree file: 39_Dorylomorph83xwg_MB.tre Description: 83 taxa (all taxa), ACTG coding, wg only, MB