v
2012-05-09T16:45:31Z
VmFRKa*FRUcyt*ATP/(KmATPfrka*FRUcyt+KmFRUfrka*ATP+FRUcyt*ATP)/Vcyt
2012-05-09T16:45:45Z
Vm_SPase*S6P/(KmS6P_SPase+S6P)/Vcyt
2012-05-09T16:45:36Z
Vm_NI/(1+GLCcyt/KiGLCcyt_NI)*SUC/(KmSUC_NI*(1+FRUcyt/KiFRUcyt_NI)+SUC)/Vcyt
2012-04-20T11:24:37Z
VmPFK*(FRU6P/FRU6Phalf)^hpfk*(ATP/ATPhalf)^hpfk/((1+(ATP/ModATPhalf)^hpfk)/(1+sigma^(4*hpfk)*(ATP/ModATPhalf)^hpfk)+((FRU6P/FRU6Phalf)^hpfk+(ATP/ATPhalf)^hpfk)*(1+sigma^(2*hpfk)*(ATP/ATPhalf)^hpfk)/(1+sigma^(4*hpfk)*(ATP/ATPhalf)^hpfk)+(FRU6P/FRU6Phalf)^hpfk*(ATP/ATPhalf)^hpfk)/Vcyt
2012-04-20T11:24:21Z
Vf_SPS*(FRU6P*UDPGLC-S6P*UDP/Keq_SPS)/(FRU6P*UDPGLC*(1+S6P/KiS6P_SPS)+KmFRU6P_SPS*(1+Phos/KiPi_SPS)*(UDPGLC+KiUDPGLC_SPS)+KmUDPGLC_SPS*FRU6P+Vf_SPS/(Vr_SPS*Keq_SPS)*(S6P*KmUDP_SPS*(1+UDPGLC/KiUDPGLC_SPS)+UDP*(KmS6P_SPS*(1+KmUDPGLC_SPS*FRU6P/(KiUDPGLC_SPS*KmFRU6P_SPS*(1+Phos/KiPi_SPS)))+S6P*(1+FRU6P/KiFRU6P_SPS))))/Vcyt
2012-05-09T16:45:38Z
VmPFP/(KmFRU6Ppfp*KmPPipfp)*(FRU6P*PPi-FBP*Phos/KeqPFP)/((1+FRU6P/KmFRU6Ppfp+FBP/KmFBPpfp)*(1+PPi/KmPPipfp+Phos/KmPipfp))/Vcyt
2012-04-20T11:22:18Z
-VfSSc*(SUC*UDP-FRUcyt*UDPGLC/KeqSS)/(SUC*UDP*(1+FRUcyt/KiFRUssc)+KmSUCssc*(UDP+KiUDPssc)+KmUDPssc*SUC+VfSSc/(VrSSc*KeqSS)*(FRUcyt*KmUDPGLCssc*(1+UDP/KiUDPssc)+UDPGLC*(KmFRUssc*(1+KmUDPssc*SUC/(KiUDPssc*KmSUCssc))+FRUcyt*(1+SUC/KiSUCssc))))/Vcyt
2012-05-09T16:45:34Z
Vm_HK_GLC*(GLCcyt/KmGLCcyt_HK_GLC)*(ATP/KmATP_HK_GLC)/((1+ATP/KmATP_HK_GLC)*(1+GLCcyt/KmGLCcyt_HK_GLC+FRUcyt/KmFRUcyt_HK_GLC+GLC6P/KiGLC6P_HK_GLC+FRU6P/KiFRU6P_HK_GLC))/Vcyt
2012-04-20T11:24:27Z
VmALD*FBP/(KmFBPALD+FBP)/Vcyt
2014-06-24T20:05:53Z
(Vf11*SUC/Km11Suc-Vr11*SUCvac/Km11Sucvac)/(1+SUC/Km11Suc+SUCvac/Km11Sucvac)
2012-05-30T17:21:55Z
(Vf18*GLC6P/Km18G6P-Vr18*FRU6P/Km18F6P)/(1+GLC6P/Km18G6P+FRU6P/Km18F6P)/Vcyt
2012-05-30T17:43:42Z
(Vf19*GLC6P/Km19G6P-Vr19*GLC1P/Km19G1P)/(1+GLC6P/Km19G6P+GLC1P/Km19G1P)/Vcyt
2012-05-30T17:47:43Z
(Vf20*UTP*GLC1P/(Km20UTP*Km20G1P)-Vr20*UDPGLC*PPi/(Km20UDP*Km20PPi))/((1+UDPGLC/Km20UDPGLC+UTP/Km20UTP)*(1+PPi/Km20PPi+GLC1P/Km20G1P))/Vcyt
2013-04-20T19:05:59Z
Vm_FBPase*FBP/(KmFBP+FBP)/Vcyt
2012-05-30T17:27:30Z
(Vf16*FRUcyt/(Km16Glc+GLCcyt)-Vr16*FRUvac/(Km16Glcvac+GLCvac))/(1+FRUcyt/(Km16Glc+GLCcyt)+FRUvac/(Km16Glcvac+GLCvac))
2012-05-30T17:21:42Z
(Vf16*GLCcyt/(Km16Glc+FRUcyt)-Vr16*GLCvac/(Km16Glcvac+FRUvac))/(1+GLCcyt/(Km16Glc+FRUcyt)+GLCvac/(Km16Glcvac+FRUvac))
2013-04-12T16:04:02Z
Vf13/((Km13G6P)*Km13phosplast)*(GLC6P*phosplast-GLC6Pplast*phos/Keq13)/((1+GLC6P/Km13G6P+GLC6Pplast/Km13G6Pplast)*(1+phosplast/Km13phosplast+phos/Km13phos))
2014-06-24T19:14:22Z
Vm_AI/(1+GLCvac/KiGLCvac_AI)*SUCvac/(KmSUC_AI*(1+FRUvac/KiFRUvac_AI)+SUCvac)/Vvac
2012-04-20T10:07:46Z
From "Model-assisted analysis of sugar metabolism throughout tomato fruit development reveals enzyme and carrier properties in relation to vacuole expansion"
Bertrand Beauvoit, Sophie Colombié, Antoine Monier, Marie-Hélène Andrieu, Benoit Biais, Camille Bénard, Catherine Chéniclet, Martine Dieuaide-Noubhani, Christine Nazaret, Jean-Pierre Mazat, Yves Gibon
INRA, UMR 1332 Biologie du Fruit et Pathology, F33883 Villenave d’Ornon Cedex, France
Univ. Bordeaux 146 Léo-Saignat, F 33076 Bordeaux Cedex, France.
IMPORTANT:
Dimensions of the parameters (input) and variables (output) of the model:
Parameters :
Compartment Volumes: mL g-1 FW
Cofactors, Km and Ki : mM
Vmax: µmol min-1 g-1 FW
Starch_storage: µmol equiv Glc mL-1
CellWall_synth: µmol equiv Glc mL-1
Variables (steady-state results):
Concentrations: mM
Fluxes: µmol min-1 g-1 FW.
2012-05-28T21:24:56Z2014-06-24T18:04:00Z2014-06-24T18:55:21Z2014-06-24T18:55:05Z2012-05-25T17:46:56Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[vacuole],Reference=Value>*<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[vacuole],Vector=Metabolites[GLCvac],Reference=Concentration>+<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[cytosol],Reference=Value>*<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[cytosol],Vector=Metabolites[GLCcyt],Reference=Concentration>
2012-05-25T17:48:41Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[vacuole],Reference=Value>*<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[vacuole],Vector=Metabolites[FRUvac],Reference=Concentration>+<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[cytosol],Reference=Value>*<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[cytosol],Vector=Metabolites[FRUcyt],Reference=Concentration>
2012-05-28T21:17:28Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[cytosol],Reference=Value>*<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[cytosol],Vector=Metabolites[GLC6P],Reference=Concentration>+<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[plastid],Reference=Value>*<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[plastid],Vector=Metabolites[GLC6Pplast],Reference=Concentration>
2012-05-25T17:45:35Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[vacuole],Reference=Value>*<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[vacuole],Vector=Metabolites[SUCvac],Reference=Concentration>+<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[cytosol],Reference=Value>*<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[cytosol],Vector=Metabolites[SUC],Reference=Concentration>
2012-05-25T17:51:01Z2012-05-09T16:18:49Z2012-05-09T16:18:51Z2012-05-09T16:18:49Z2012-05-30T18:20:34Z2012-05-09T16:13:51Z2012-05-30T17:35:55Z2012-05-30T17:35:52Z2012-05-09T16:18:37Z2012-05-09T16:18:14Z2012-05-09T16:18:19Z2012-05-09T16:18:09Z2012-06-04T10:35:49Z2012-05-09T16:18:18Z2012-05-09T16:17:01Z2012-05-09T16:43:22Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[cytosol],Vector=Metabolites[ADP],Reference=Concentration>/3
2012-05-30T18:13:29Z2012-05-27T23:17:44Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[cytosol],Vector=Metabolites[ATP],Reference=Concentration>/3
2012-09-03T17:16:59Z2012-05-25T17:51:36Z2012-05-28T21:23:46Z2012-05-25T17:51:02Z2012-05-25T17:50:08Z2012-05-30T18:21:02Z2013-04-12T17:00:19Z2012-05-09T16:14:28Z2013-04-12T16:51:24Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[cytosol],Vector=Metabolites[Phos],Reference=Concentration>*30
2012-04-20T11:26:02Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[cytosol],Vector=Metabolites[UDPGLC],Reference=Concentration>
2012-04-20T11:25:50Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[cytosol],Vector=Metabolites[GLC6P],Reference=Concentration>
2012-04-20T11:25:26Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[cytosol],Vector=Metabolites[FRU6P],Reference=Concentration>
2012-05-25T17:25:03Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[Vfm10],Reference=Value>
2012-05-25T17:25:01Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[Vfm16],Reference=Value>
2012-05-25T17:14:15Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[vacuole],Vector=Metabolites[SUCvac],Reference=Concentration>*<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[RGR],Reference=Value>
2012-05-25T17:13:56Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[vacuole],Vector=Metabolites[GLCvac],Reference=Concentration>*<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[RGR],Reference=Value>
2012-05-25T17:15:35Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Compartments[vacuole],Vector=Metabolites[FRUvac],Reference=Concentration>*<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[RGR],Reference=Value>
2012-05-25T17:29:36Z2012-05-25T17:58:16Z2012-06-04T10:48:07Z2012-06-04T10:48:20Z2013-02-07T16:40:16Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[Km16GLC],Reference=Value>*10^<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[deltaP],Reference=Value>
2012-07-09T12:10:55Z2012-09-03T17:23:25Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[Km10SUC],Reference=Value>*10^<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[deltaP],Reference=Value>
2012-05-31T09:10:53Z2012-10-23T08:17:44Z2012-10-23T08:17:28Z2012-10-23T08:17:08Z2012-10-23T08:16:44Z2012-10-23T08:15:49Z2012-10-23T11:14:04Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[VrmUGPase],Reference=Value>/3.69*1.51
2012-10-23T08:16:21Z2012-10-23T08:18:01Z2012-10-23T08:18:16Z2012-10-23T11:12:55Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[VrmPGM],Reference=Value>/3.58*0.188
2012-10-23T11:12:54Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[VrmPGI],Reference=Value>/0.55*0.311
2012-10-23T08:15:19Z2012-10-23T08:18:37Z2012-10-23T08:18:53Z2012-10-23T08:19:15Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[VfmSPS],Reference=Value>/1.923
2012-10-23T08:19:15Z2012-10-23T08:23:07Z2012-10-23T08:23:56Z2012-10-23T09:14:28Z2012-10-23T09:19:49Z2013-02-04T10:06:45Z
<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[VfmSuSy],Reference=Value>*2
2013-04-12T17:05:04Z
(0.933-<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[vacuole],Reference=Value>)*<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[plast/cyto ratio],Reference=Value>/(1+<CN=Root,Model=Tomato fruit sugar model v6.4.2 high affinity sugar carriers 15 dpa ,Vector=Values[plast/cyto ratio],Reference=Value>)
2013-04-15T15:27:37Z2013-04-15T15:30:08Z2013-04-15T20:29:18Z2013-04-20T18:17:06Z2012-04-20T10:08:17Z2012-04-20T10:11:06Z2012-04-20T11:15:03Z2012-04-20T11:13:57Z2012-04-20T11:14:16Z2012-04-20T11:15:09Z2012-04-20T11:14:39Z2012-04-20T11:18:20Z2012-04-20T10:08:14Z2012-04-20T11:12:29Z2012-05-04T11:39:24Z2012-05-04T11:41:21Z2012-05-04T11:41:47Z2012-05-25T16:11:57Z2012-05-25T17:38:00Z2012-05-25T16:34:15Z2012-05-25T16:34:19Z2012-05-25T16:15:51Z2012-05-30T17:29:54Z2012-05-30T17:34:39Z2012-05-30T17:41:47Z2012-06-04T10:36:51Z2013-04-12T16:00:56Z2013-04-20T19:04:13Z
0 1.460018291325275e+016 2.944251949075961e+016 4.504319372170635e+016 1240083255467858 2.18993523419991e+019 2.727882359206017e+019 121842904454726.3 4533498301022.706 2.282508969256011e+018 2237330223929249 5.162025390625247e+016 2232827280500893 11756033213594.53 1524253571762196 7465351189732467 1.669491294291972e+018 0.01367329769578891 0.4966513290219522 0.1609832618137869 0.01504806 0.02315353 0.0005142727968259121 0.00614620012090562 0.004934149801508521 348.3854359824322 1045.156307947297 1.441504396990647 0.171021343778181 0.5665852185925817 1.1463961715072 2.72810609222841e+019 2.189947418490355e+019 9.666344762795882e+016 2.31195148874677e+018 0.04060794185085803 0.01957807327559349 3.01107060500001e+018 4572760715286588 2.23960535691974e+016 4.280746908440956e+017 3087125025613404 0 0 0 0 0 0 1 0.1506005636584115 0.7628213630659951 0.01957807327559349 0.02073253 0.0001035034636462606 1.2 0.4 2.94 0.7628213630659951 0.07027445541760001 0.2906352323039999 0.3926264705311999 2.384232208463999 0.5731980857536001 0.428558112192 0.12017871785984 1.46021924292 0.0780890721792 1.00199958272 3.256683035776 3.5226167052288 0.01504806 0.02315353 0.0134132018185074 0.06969513017448015 0.2056568661065627 0.1506005636584115 0.13 0.0148133929664
Automatically generated report.
Automatically generated report.
Automatically generated report.
Automatically generated report.
Automatically generated report.
Automatically generated report.
Automatically generated report.
Automatically generated report.
Automatically generated report.