Scripts for AMOVA simulations (evaluation of the effect of a dense locality sampling) 2016-3-16 Yasuyuki Hashiguchi ## caution ## To run generate_dataset6.sh, command-line version of Arlequin 3.5 is required. Download arlecore3153 or arlecoremac from http://cmpg.unibe.ch/software/arlequin35/ # usage of the sctipts run "generate_dataset6.sh" after setting parameters. See generate_dataset6.sh. arlecore: version of the command-line version of Arlequin (arlecore3513_32bit) settingsFile: name of a setting file of Arlequin (97.ars) outfile: name of an output file of the simulation startfile: Arlequin input file of "real" populations repl: number of raplicates count: start point of replications (set to 0) pop: number of populations sampled from a startfile