Comparative salamander climbing videos
Data files
May 19, 2026 version files 52.92 GB
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Aaen29_45deg04.zip
1.56 GB
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Aaen29_80deg01.zip
2.43 GB
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Aaen29_Flat01.zip
1.72 GB
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Aaen29_Vert05.zip
3.10 GB
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Ahar08_45deg05.zip
2.43 GB
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Ahar08_80deg05.zip
4.86 GB
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Ahar08_Flat05.zip
2.48 GB
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Ahar08_Vert04.zip
5.69 GB
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Alug03_45deg02.zip
2.07 GB
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Alug03_80deg05.zip
2.42 GB
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Alug03_Flat05.zip
1.79 GB
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Alug03_Vert03.zip
3.43 GB
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DeepLabCut_TrainedModel.zip
5.24 GB
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Pglu10_45deg05.zip
2.12 GB
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Pglu10_80deg02.zip
3.69 GB
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Pglu10_Flat06.zip
1.83 GB
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Pglu10_Vert05.zip
6.07 GB
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README.md
4.71 KB
Abstract
Hundreds of plethodontid salamander species can climb vertical structures, despite lacking morphological adaptations typically found in other climbing tetrapods. To compensate, salamanders likely rely more on behavioral modifications to mediate the relationship between their generalist morphologies and climbing performance. Here, we examined four plethodontid species (Aneides aeneus, Aneides lugubris, Aneides hardii, and Plethodon glutinosus) that differ in their habitat preferences, climbing tendencies, and limb morphologies. Using 3D high-speed videography, we compared how these species adjust their gait and limb kinematics while traversing a flat surface inclined at 0°, 45°, 80°, and 90°. Here, we present representative videos of one individual per species moving each of the four inclines.
Dataset DOI: 10.5061/dryad.0000000ht
Description of the data and file structure
We used a two-camera setup to compare four salamander species (Aneides aeneus, Aneides lugubris, Aneides hardii, and Plethodon glutinosus) traversing a flat surface inclined at 0°, 45°, 80°, and 90° at 400 fps. A DeepLabCut neural network was trained to track anatomical landmarks in the dorsal and lateral view of all 735 trials. Included here are example videos and the trained DeepLabCut network. See the associated manuscript for more details about the methodology.
Files
File: Aaen29_Flat01.zip
Description: Example dorsal and lateral videos of A. aeneus (5.4 cm SVL) moving on a 0° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Aaen29_45deg04.zip
Description: Example dorsal and lateral videos of A. aeneus (5.4 cm SVL) moving on a 45° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Aaen29_80deg01.zip
Description: Example dorsal and lateral videos of A. aeneus (5.4 cm SVL) moving on a 80° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Aaen29_Vert05.zip
Description: Example dorsal and lateral videos of A. aeneus (5.4 cm SVL) moving on a 90° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Ahar08_Flat05.zip
Description: Example dorsal and lateral videos of A. hardii (5.4 cm SVL) moving on a 0° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Ahar08_45deg05.zip
Description: Example dorsal and lateral videos of A. hardii (5.4 cm SVL) moving on a 45° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Ahar08_80deg05.zip
Description: Example dorsal and lateral videos of A. hardii (5.4 cm SVL) moving on a 80° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Ahar08_Vert04.zip
Description: Example dorsal and lateral videos of A. hardii (5.4 cm SVL) moving on a 90° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Alug03_Flat05.zip
Description: Example dorsal and lateral videos of A. lugubris (6.8 cm SVL) moving on a 0° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Alug03_45deg02.zip
Description: Example dorsal and lateral videos of A. lugubris (6.8 cm SVL) moving on a 45° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Alug03_80deg05.zip
Description: Example dorsal and lateral videos of A. lugubris (6.8 cm SVL) moving on a 80° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Alug03_Vert03.zip
Description: Example dorsal and lateral videos of A. lugubris (6.8 cm SVL) moving on a 90° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Pglu10_Flat06.zip
Description: Example dorsal and lateral videos of P. glutinosus (6.9 cm SVL) moving on a 0° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Pglu10_45deg05.zip
Description: Example dorsal and lateral videos of P. glutinosus (6.9 cm SVL) moving on a 45° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Pglu10_80deg02.zip
Description: Example dorsal and lateral videos of P. glutinosus (6.9 cm SVL) moving on a 80° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: Pglu10_Vert05.zip
Description: Example dorsal and lateral videos of P. glutinosus (6.9 cm SVL) moving on a 90° incline. Also includes the calibration videos and camera calibrations in MayaCam format.
File: DeepLabCut_TrainedModel.zip
Description: DeepLabCut project folder containing training images, the manually marked coordinates, and the trained model used to analyze all 840 trials.
Code/software
The camera calibration files were generated with XMALab v2.1. The DeepLabCut network was trained with DLC v2.3.8.
The full landmark dataset and supporting Python and R scripts are hosted on GitHub:
