Data from: Plant virus immunotherapy for HPV‐associated oropharyngeal squamous cell carcinoma
Data files
Aug 13, 2026 version files 43.59 KB
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Fig_1B_-_mEER_HPV__survival.csv
568 B
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Fig_1B_-_mEER_HPV__tumor_volumes.csv
9.46 KB
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Fig_1C_-_mEER_HPV-_survival.csv
568 B
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Fig_1C_-_mEER_HPV-_tumor_volumes.csv
9.61 KB
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Fig_2A_-_Pathology_report.xlsx
9.62 KB
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Fig_3B_-_mEER_HPV_positive_postop.csv
1.15 KB
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Fig_3C_-_mEER_HPV_negative_postop.csv
957 B
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Fig_4A_-_HPV__innate_panel.csv
378 B
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Fig_4B_-_HPV-_innate_panel.csv
377 B
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Fig_5A_-_HPV__adaptive_panel.csv
358 B
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Fig_5B_-_HPV-_adaptive_panel.csv
358 B
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README.md
10.18 KB
Abstract
In high‐income countries, 60%–70% of oropharyngeal squamous cell carcinomas (OPSCCs) are attributable to human papillomavirus (HPV). Immunotherapy is the current second‐line treatment for advanced or metastatic cases of HPV + OPSCC; however, drug resistance, tumor heterogeneity, and adverse events limit efficacy and response. Here, we evaluated the drug candidate cowpea mosaic virus (CPMV) as an intratumoral (i.t.) immunotherapy in mouse E6/E7/hRas (mEER) models of HPV+ and HPV− OPSCC, focusing on efficacy and immune responses. These tumor models recapitulate key features of human disease, including oncogenes that drive tumor progression. Using a dose‐escalation strategy, CPMV achieved dose‐dependent control of HPV + tumors, with 50% tumor‐free survival by day 80. HPV − tumor growth was delayed but with minimal survival benefits. In a neoadjuvant setting (two 100 µg i.t. doses prior to tumor debulking), CPMV eradicated residual disease, with 75% of HPV + and 25% of HPV − mice remaining tumor-free. Early tumor profiling showed immune cell infiltration and remodeling of the HPV + tumor microenvironment (TME), including NK and myeloid cell recruitment and enrichment of CD4 + and CD8 + T cells within the TME. Multiplex cytokine analysis revealed ∼3‐fold increases in GM‐CSF, IL‐6, and MCP‐1 and ∼2‐fold increases in type I and II interferons, TNF‐α, and CCL3/MIP‐1α in HPV + tumors, consistent with innate activation and subsequent adaptive priming. Minor effects on the TME in the HPV − tumors suggest that tumor antigenicity may influence therapeutic outcomes. Overall, we demonstrated that CPMV i.t. immunotherapy elicits potent, durable antitumor immunity and TME remodeling in HPV + OPSCC, supporting further development as a neoadjuvant and local immunotherapy to address unmet clinical needs.
Dataset DOI: 10.5061/dryad.02v6wwqkc
Description of the data and file structure
The following files contain the raw datasets required to reproduce the analyses presented in the article “Plant Virus Immunotherapy for HPV-Associated Oropharyngeal Squamous Cell Carcinoma”. This article was authored by Jessica Fernanda Affonso de Oliveira and Patrick Opdensteinen, Andrea Simms, Seongwon Jung, Giuliana P. Mognol, Hui Chen, Judith A. Varner, and Nicole F. Steinmetz (UC San Diego & Moores Cancer Center) for Advanced Nanobiomed Research (2026).
These datasets support the evaluation of cowpea mosaic virus (CPMV) as an intratumoral immunotherapy for human papillomavirus-positive (HPV+) and HPV-negative (HPV−) oropharyngeal squamous cell carcinoma (OPSCC). CPMV was administered to murine E6/E7/hRas (mEER) tumor models using dose-escalation and neoadjuvant treatment strategies. The resulting tumor and immune response data were analyzed to evaluate therapeutic efficacy, immune cell infiltration, tumor microenvironment remodeling, and cytokine production in response to CPMV treatment.
The raw data included in this repository correspond to the measurements used to generate the figures and statistical analyses reported in the publication, which are intended to be reproducible using the provided data. Methods used to assess treatment efficacy and characterize immune responses include tumor growth and survival analyses, flow cytometry, multiplex cytokine analysis, and tumor immune profiling.
Files and variables
File: Fig_1B_-_mEER_HPV__survival.csv
Description: This file is an Excel spreadsheet that contains the raw data used to produce the survival curve shown in Figure 1B of the reference paper. These data were collected by monitoring mouse tumors.
Variables
- Control: Vehicle control (Phosphate Buffered Saline - PBS)
- CPMV: Cowpea Mosaic Virus
- 20: 20 micrograms of CPMV in 20 microliters of PBS
- 100: 100 micrograms of CPMV in 20 microliters of PBS
- 500: 500 micrograms of CPMV in 20 microliters of PBS
- mEER: mouse E6/E7/hRas, a murine oropharyngeal squamous cell carcinoma (OPSCC) cell line
- HPV+: Human papillomavirus positive
- 1: Died before endpoint (on day specified in file)
- 0: Survived through endpoint (80 days post inoculation)
- L1: Left ear 1 punch (mouse differentiator)
- R1: Right ear 1 punch (mouse differentiator)
- RL: Right and left ears 1 punch (mouse differentiator)
- R2: Right ear 2 punches (mouse differentiator)
- NP: No ear punch (mouse differentiator)
- L1_1: Left ear 1 punch, cage 2 (mouse differentiator)
- R1_1: Right ear 1 punch, cage 2 (mouse differentiator)
- RL_1: Right and left ears 1 punch, cage 2 (mouse differentiator)
- R2_1: Right ear 2 punches, cage 2 (mouse differentiator)
- NP_1: No ear punch, cage 2 (mouse differentiator)
File: Fig_1B_-_mEER_HPV__tumor_volumes.csv
Description: This file is an Excel spreadsheet that contains the raw data used to produce the tumor curve shown in Figure 1B of the reference paper. These data were collected by monitoring mouse tumors. Data in Figure 1B (mEER HPV+ tumor volumes) are means ± SD for n ≥ 5 per group (using a cutoff at day 28). Values followed by an asterisk (*) in the table mean the individual tumor values that were recorded for all live animals until they reached the endpoint.
Variables
- DPI: Days Post Tumor Inoculation
- PBS: Phosphate Buffered Saline
- M(1-10): Mouse number - random identifier within a treatment group
- CPMV: Cowpea Mosaic Virus
- 20: 20 micrograms of CPMV in 20 microliters of PBS
- 100: 100 micrograms of CPMV in 20 microliters of PBS
- 500: 500 micrograms of CPMV in 20 microliters of PBS
- mEER: mouse E6/E7/hRas, a murine oropharyngeal squamous cell carcinoma (OPSCC) cell line
- HPV+: Human papillomavirus positive
File: Fig_1C_-_mEER_HPV-_survival.csv
Description: This file is an Excel spreadsheet that contains the raw data used to produce the survival curve shown in Figure 1C of the reference paper. These data were collected by monitoring mouse tumors.
Variables
- Control: Vehicle control (Phosphate Buffered Saline - PBS)
- CPMV: Cowpea Mosaic Virus
- 20: 20 micrograms of CPMV in 20 microliters of PBS
- 100: 100 micrograms of CPMV in 20 microliters of PBS
- 500: 500 micrograms of CPMV in 20 microliters of PBS
- mEER: mouse E6/E7/hRas, a murine oropharyngeal squamous cell carcinoma (OPSCC) cell line
- HPV-: Human papillomavirus negative
- 1: Died before endpoint (on day specified in file)
- 0: Survived through endpoint (80 days post inoculation)
- L1: Left ear 1 punch (mouse differentiator)
- R1: Right ear 1 punch (mouse differentiator)
- RL: Right and left ears 1 punch (mouse differentiator)
- R2: Right ear 2 punches (mouse differentiator)
- NP: No ear punch (mouse differentiator)
- L1_1: Left ear 1 punch, cage 2 (mouse differentiator)
- R1_1: Right ear 1 punch, cage 2 (mouse differentiator)
- RL_1: Right and left ears 1 punch, cage 2 (mouse differentiator)
- R2_1: Right ear 2 punches, cage 2 (mouse differentiator)
- NP_1: No ear punch, cage 2 (mouse differentiator)
File: Fig_1C_-_mEER_HPV-_tumor_volumes.csv
Description: This file is an Excel spreadsheet that contains the raw data used to produce the tumor curve shown in Figure 1C of the reference paper. These data were collected by monitoring mouse tumors.
Variables
- DPI: Days Post Tumor Inoculation
- PBS: Phosphate Buffered Saline
- M(1-10): Mouse number - random identifier within a treatment group
- CPMV: Cowpea Mosaic Virus
- 20: 20 micrograms of CPMV in 20 microliters of PBS
- 100: 100 micrograms of CPMV in 20 microliters of PBS
- 500: 500 micrograms of CPMV in 20 microliters of PBS
- mEER: mouse E6/E7/hRas, a murine oropharyngeal squamous cell carcinoma (OPSCC) cell line
- HPV-: Human papillomavirus negative
File: Fig_2A_-_Pathology_report.xlsx
Description: This file is an Excel spreadsheet that contains the raw data used to describe Figure 2A in the reference paper. The data detail the histological evaluation by a pathologist. The immune infiltrate is dominated by F4/80⁺ macrophages in both samples. The second sample demonstrates markedly increased CD3⁺ T-cell and Ly6G⁺ neutrophil infiltration compared with the first, suggesting a more inflamed, immune-cell-rich tumor microenvironment, while CD19⁺ B cells remain scarce in both samples.
Variables
- Sample ID: Identification
- C20HPVN-TUMOR: Human papillomavirus negative (HPVN, HPV-) tumor sample treated with 20 micrograms (ug) of cowpea mosaic virus (CPMV) in 20 microliters (ul) of phosphate-buffered saline (PBS)
- C100HPVP-TUMOR: Human papillomavirus positive (HPVP, HPV+) tumor sample treated with 100 micrograms (ug) of cowpea mosaic virus (CPMV) in 20 microliters (ul) of phosphate buffered saline (PBS)
File: Fig_3B_-_mEER_HPV_positive_postop.csv
Description: This file is an Excel spreadsheet that contains the raw data used to produce the tumor curve shown in Figure 3B of the reference paper. These data were collected by mice tumor monitoring post tumor debulking surgery. Data in Figure 1B (mEER HPV+ tumor volumes) are means ± SD for n ≥ 5 per group (using a cutoff at day 20). Values followed by an asterisk (*) in the table mean the individual tumor values that were recorded for all live animals until they reached the endpoint.
Variables
- DPO: Days Post Operation
- PBS: Phosphate Buffered Saline
- M(1-8): Mouse number - random identifier within a treatment group
- CPMV: Cowpea Mosaic Virus
- mEER: mouse E6/E7/hRas, a murine oropharyngeal squamous cell carcinoma (OPSCC) cell line
- HPV+: Human papillomavirus positive
File: Fig_3C_-_mEER_HPV_negative_postop.csv
Description: This file is an Excel spreadsheet that contains the raw data used to produce the tumor curve shown in Figure 3C of the reference paper. These data were collected by mice tumor monitoring post tumor debulking surgery.
Variables
- DPO: Days Post Operation
- PBS: Phosphate Buffered Saline
- M(1-8): Mouse number - random identifier within a treatment group
- CPMV: Cowpea Mosaic Virus
- mEER: mouse E6/E7/hRas, a murine oropharyngeal squamous cell carcinoma (OPSCC) cell line
- HPV-: Human papillomavirus negative
File: Fig_4B_-_HPV-_innate_panel.csv
Description: This file is an Excel spreadsheet that contains the raw data used to produce the tumor curve shown in Figure 4B of the reference paper. The data were collected via flow cytometry analysis and show the innate immune cell phenotyping.
Variables
- CPMV: Cowpea Mosaic Virus
- PBS: Phosphate Buffered Saline
- HPV-: Human papillomavirus negative
File: Fig_4A_-_HPV__innate_panel.csv
Description: This file is an Excel spreadsheet that contains the raw data used to produce the tumor curve shown in Figure 4A of the reference paper. The data were collected via flow cytometry analysis and show the innate immune cell phenotyping.
Variables
- CPMV: Cowpea Mosaic Virus
- PBS: Phosphate Buffered Saline
- HPV+: Human papillomavirus positive
File: Fig_5B_-_HPV-_adaptive_panel.csv
Description: This file is an Excel spreadsheet that contains the raw data used to produce the tumor curve shown in Figure 5B of the reference paper. The data were collected via flow cytometry analysis and show the adaptive immune cell phenotyping.
Variables
- CPMV: Cowpea Mosaic Virus
- PBS: Phosphate Buffered Saline
- HPV-: Human papillomavirus negative
File: Fig_5A_-_HPV__adaptive_panel.csv
Description: This file is an Excel spreadsheet that contains the raw data used to produce the tumor curve shown in Figure 5A of the reference paper. The data were collected via flow cytometry analysis and show the adaptive immune cell phenotyping.
Variables
- CPMV: Cowpea Mosaic Virus
- PBS: Phosphate Buffered Saline
- HPV+: Human papillomavirus positive
