Data from: How do host age and nutrition affect density regulation of obligate versus facultative bacterial symbionts? Insights from the tsetse fly
Data files
Sep 25, 2025 version files 465.86 KB
-
Emergence_dates.csv
1 KB
-
Glossina_24.05.23_-__Quantification_Cq_Results.csv
29.26 KB
-
Glossina_24.05.23_-__Standard_Curve_Results.csv
97 B
-
Glossina_25.05.23_-__Quantification_Cq_Results.csv
35.25 KB
-
Glossina_25.05.23_-__Standard_Curve_Results.csv
96 B
-
Glossina_29.05.23_-__Quantification_Cq_Results.csv
34.99 KB
-
Glossina_29.05.23_-__Standard_Curve_Results.csv
98 B
-
Glossina_30.03.23_-__Quantification_Cq_Results.csv
43.29 KB
-
Glossina_30.03.23_-__Standard_Curve_Results.csv
97 B
-
Pupal_weight_survival.csv
6.01 KB
-
README.md
3.56 KB
-
Samples_data.csv
20.48 KB
-
Sodalis_24.05.23_-__Quantification_Cq_Results.csv
28.78 KB
-
Sodalis_24.05.23_-__Standard_Curve_Results.csv
97 B
-
Sodalis_26.05.23_-__Quantification_Cq_Results.csv
34.76 KB
-
Sodalis_26.05.23_-__Standard_Curve_Results.csv
97 B
-
Sodalis_28.04.23_-__Quantification_Cq_Results.csv
43.21 KB
-
Sodalis_28.04.23_-__Standard_Curve_Results.csv
97 B
-
Sodalis_29.05.23_-__Quantification_Cq_Results.csv
34.88 KB
-
Sodalis_29.05.23_-__Standard_Curve_Results.csv
97 B
-
Survival_reproduction.csv
10.93 KB
-
Wigglesworthia_24.05.23_-__Quantification_Cq_Results.csv
28.55 KB
-
Wigglesworthia_24.05.23_-__Standard_Curve_Results.csv
96 B
-
Wigglesworthia_25.05.23_-__Quantification_Cq_Results.csv
32.94 KB
-
Wigglesworthia_25.05.23_-__Standard_Curve_Results.csv
97 B
-
Wigglesworthia_29.05.23_-__Quantification_Cq_Results.csv
33.75 KB
-
Wigglesworthia_29.05.23_-__Standard_Curve_Results.csv
96 B
-
Wigglesworthia_31.03.23_-__Quantification_Cq_Results.csv
43.07 KB
-
Wigglesworthia_31.03.23_-__Standard_Curve_Results.csv
96 B
Abstract
Host-symbiont relationships can vary tremendously in the extent to which hosts depend on and control their symbionts. Obligate symbionts that provide micronutrients to their host are often compartmentalised to specialised host organs and depend on their hosts for survival, whereas facultative symbionts retain the ability to survive outside of their hosts. Few studies compare the extent to which a host controls and adjusts the density of obligate and facultative symbionts directly. We used tsetse as a model for teasing apart the relationships between a host (Glossina morsitans morsitans) and obligate (Wigglesworthia glossinidia) and facultative (Sodalis glossinidius) symbionts. We hypothesised that tsetse actively regulate the density of Wigglesworthia according to the host’s requirements, depending on their current nutritional state and developmental age. In contrast, we postulated that Sodalis retains some independence from host control, and that the growth of this symbiont is dependent on the conditions of the immediate environment, such as nutrient availability. Using qPCR, we examined how symbiont densities change across host age and the hunger cycle. Additionally, we investigated how host nutrition influences symbiont density, by comparing tsetse that were fed nutrient-poor or vitamin enriched diets. We found that the density of Wigglesworthia was not influenced by the nutritional status of the host, but reflected long-term host nutritional needs. In contrast, the density of facultative Sodalis depended on the nutrient availability. We propose that tsetse tightly regulate Wigglesworthia, but exert only partial control over Sodalis growth due to the relatively recent transition of this symbiont to host-associated living.
https://doi.org/10.5061/dryad.0gb5mkm9f
Description of the data and file structure
Symbiont density data, collected by qPCR with absolute quantification, as well as survival and reproductive output of tsetse. qPCR absolute quantification data for Glossina morsitans morsitans (tsetse host), Wigglesworthia glossinidia (obligate symbiont), Sodalis glossinidius (facultative symbiont), and R code used to analyse symbiont density.
empty cells are denoted "na"
Column headers for "Quantification_Cq_Results.csv" files:
- Well: plate well
- Fluor: Name of the fluorescent marker
- Content: Standard or Unknown
- Sample: Sample ID
- Cq: cq
- Cq Mean: mean cq for the replicates
- Cq Std. dev: standard deviation of cq
- Starting Quantity (SQ): quantity of template in ng
- Log starting quantity: log of the quantity of the template
- SQ Mean: mean of the starting quantity
- SQ Std. Dev: standard deviation of the starting quantity
- Set point: Annealing temperature (degreesCelsiuss)
Column headers for "Standard_Curve_Results.csv" files:
- Fluor: Name of the fluorescent marker
- Efficiency: The amplification efficiency
- Slope: Gradient of the standard curve
- Y-intercept: y-intercept of the standard curve
- R^2: R-squared
Column headers for "Survival_reproduction.csv":
- Date: date of record
- Day: day of experiment
- Columns 3 to 32: Cage number and designation for male (M), female (F), or pupae;
- Count the number of surviving adults or cumulative pupae produced
Column headers for "Samples_data.csv":
- Sample: Sample ID
- Experiment: Study (nutrition, age, hunger cycle)
- Plate: plate A or B for study samples that didn't fit on 1 plate
- Cage: Cage ID for fly housing
- Treatment: treatment
- Blood_dilution: % v/v of whole blood in diet for study 3 (100% where na)
- Enrichment % w/v of yeast extract in diet for study 3 (0% where na)
- Hours post-meal: Time from final meal to flies being killed for study 2
- Age: Age of flies for study 1
- Sex: sex
- Pregnancy: Stage of pregnancy for female flies (E = egg, L1/2/3 = larvae instar)
- Wing_length: length of the hatchet wing vein in mm
Column headers for "Pupal_weight_survival.csv":
- Deposition_date: date pupae was deposited
- Deposition_day: day of experiment
- Cage: Cage ID that the pupae came from
- Weight: weight of pupae (in mg) once blackened
- Sex: sex (recorded upon emergence)
- Emergence_date: date adults emerged
- Starvation_date: date emergent adults died
- Survival_days: number of days emergent adults survived
Column headers for "Emergence_dates.csv":
- Cage: Cage ID
- Emergence_date: date of emergence of adults from the cage
- Days_after_10th: day of experiment (starting on the 10th)
Code/software
code_survival_reproduction.R: This script analyzes survival and pupae data for tsetse flies under different blood dilution and yeast extract treatments. It generates survival plots, fits statistical models to test the effects of treatment variables on pupae weight and survival, and outputs both visualizations and model summaries.
code_density.R: This R script processes qPCR data to quantify symbiont (Wigglesworthia and Sodalis) densities in Glossina (tsetse fly) samples under different conditions (age, hunger, diet), fits statistical models to assess effects, and generates publication-ready plots of the results.
