Comparing effects of gaseous vs. particulate components of traffic-related air pollution on Alzheimer’s disease biomarkers in a genetically susceptible rat model
Data files
Jun 10, 2026 version files 151.52 KB
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AB_Cortex.csv
18.66 KB
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AB_Tau_Plasma.csv
24.02 KB
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Metadata.csv
11.32 KB
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NeuN_compiled_data.csv
24.03 KB
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OC_compiled_data.csv
35.16 KB
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PTau_compiled_data.csv
17.10 KB
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README.md
4.40 KB
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ThioS_compiled_data.csv
16.83 KB
Abstract
This study assesses the effects of gas phase vs. particulate matter (PM) components of traffic related air pollution (TRAP) from light-duty only (LDV) vs. mixtures of light- and heavy-duty vehicles (LDV+HDV) on Alzheimer's disease (AD)-relevant pathology as well as sex-by-exposure interactions in a transgenic rat model of AD. Male and female TgF344-AD rats were exposed starting at 1 month of age and randomly assigned to one of six exposure groups: (1) filtered air (FA), (2) LDV+HDV gases only; (3) LDV PM only; (4) LDV+HDV PM only; (5) LDV PM and gases; and (6) LDV+HDV PM and gases. AD-relevant endpoints were quantified in 4-, 9-, 12-, and 15- month-old animals. Cortical Aβ levels were assessed using ELISA, and quantitative immunohistochemistry (qIHC) was used to assess spatiotemporal progression of amyloid fibrils (OC antibody), density of neurons (NeuN), phosphorylated tau, and staining via thioflavinS to quantify amyloid plaques and neurofibrillary tangles. qIHC was separated by region: hippocampal dentate gyrus (DG), CA1, CA3, and entorhinal cortex (EC). Cortical Aβ levels were observed to have significant sex-by-exposure interactions and sex-dependent effects on amyloid plaque accumulation were also observed. Both sexes exhibited increased plaque levels at 15 months of age in the entorhinal cortices of rats exposed to PM alone or with LDV gases; females exposed to PM from LDV+HDV emissions had increased plaques in the hippocampus at the 9-month timepoint. The rate of plaque accumulation over all four time points was accelerated in the entorhinal cortices of both sexes exposed to PM alone, and in combination with gases, from both LDV and LDV+HDV emissions. There were no exposure effects on neuronal count, phosphorylated tau (pTau), and ThioS+ proteinopathy. TRAP effects varied according to age, sex, and brain region, suggesting that complex gene x environment interactions dictate the development of AD-related phenotypes. Further research is needed to determine the mechanisms by which the interaction of sex and TRAP may be influencing the aging brain so that effective interventions can be developed.
Dataset DOI: 10.5061/dryad.0gb5mkmgk
Description of the data and file structure
TGF344-AD transgenic AD model rats were exposed to either traffic related air pollution (TRAP) and filtered air pollution (FA) controls housed in the same facility. There was a total of 6 exposure groups exposed to either particulate matter (PM) or gas, singly or in combination, from either light-duty vehicles (LDV) or heavy-duty vehicles (HDV). Exposure groups: (1) FA; (2) LDV+HDV gases only; (3) LDV PM only; (4) LDV+HDV PM only; (5) LDV PM and gases; and (6) LDV+HDV PM and gases.
Using quantitative immunohistochemistry (qIHC), we assessed amyloid fibrils using the OC antibody, amyloid plaques and neurofibrillary tangles (NFTs) using thioflavin S staining, phosphorylated tau, and neuronal cell density using the mature neuronal marker NeuN. Sexes and hippocampal subregions (dentate gyrus, CA1, CA3) and entorhinal cortex (EC) were analyzed separately. Groups were compared to FA within each subregion and time point, and the linear regression of the trajectory over the four timepoints (4, 9, 12, and 15 months) was performed to compare slopes to assess if accumulation or loss over time was altered with any of the exposure groups.
Files and variables
File: AB_Cortex.csv
Description: ELISA data of AB42 and 40 levels from GdHCl and TBST fractions from cortex. Blank cells are missing values.
Variables
- Access #: Animal IDs
- GdHCl_42: Guanidine hydrochloride (GdHCl) fraction AB42 levels
- TBST_42: Tris-buffered saline with Tween (TBST) fraction AB42 levels
- GdHCl_40: GdHCl fraction AB40 levels
- TBST_40: TBST fraction AB40 levels
- GdHCl_42:40: GdHCl fraction AB42:40 ratio
- TBST_42:40: TBST fraction AB42:40 ratio
File: AB_Tau_Plasma.csv
Description: Show AB42, AB40, Ptau and total tau concentrations in pg/mL from the plasma, with LN transformed data. Blank cells are missing values.
Variables
- Access: Animal ID
- AB40: amyloid beta 40 levels
- AB40_LN: amyloid beta 40 natural log transformed
- AB42: amyloid beta 40 levels
- AB42_LN: amyloid beta 42 natural log transformed
- Ptau: phosphorylated tau levels
- Ptau_LN: phosphorylated tau levels natural log transformed
- Tau: Total tau levels
- Tau_LN: Total tau levels natural log transformed
File: Metadata.csv
Description: Metadata of all access numbers, exposure groups, timepoints, sexes.
Variables
- Access_Number: Animal ID, unique
- Exposure_Group
- Timepoint: in months of exposure
- Sex
File: NeuN_compiled_data.csv
Description: Quantified immunohistochemistry (IHC) data of NeuN IHC for mature neurons. Neuronal cell density/mm2 quantified.
Variables
- Access: Animal ID
- Neuronal Cell Density: cells/mm2
- Subregion: Dentate gyrus (DG), CA1, CA3 of the hippocampus and the entorhinal cortex (EC)
File: PTau_compiled_data.csv
Description: Quantified immunohistochemistry (IHC) data of phosphorylated tau IHC, immunopositive area quantified.
Variables
- Access: Animal ID
- Percent Ptau immunopositive Area: relative to cropped region area
- Subregion: Dentate gyrus (DG), CA1, CA3 of the hippocampus and the entorhinal cortex (EC)
File: OC_compiled_data.csv
Description: Quantified immunohistochemistry (IHC) data of amyloid beta fibrils and plaques IHC using the OC antibody, immunopositive area quantified.
Variables
- Access Number: Animal ID
- Percent OC immunopositive area: relative to cropped region area
- Plaque Size Average: average plaque size in um2
- Region: Dentate gyrus (DG), CA1, CA3 of the hippocampus and the entorhinal cortex (EC)
File: ThioS_compiled_data.csv
Description: Quantified Thioflavin S (ThioS) staining of amyloid beta plaques and neurofibrillary tangles.
Variables
- Access Number: Animal ID
- Percent ThioS positive area: Stained area relative to total cropped region area.
- Region: Dentate gyrus (DG), CA1, CA3 of the hippocampus and the entorhinal cortex (EC)
Code/software
Graphpad Prism was used to statistically analyze data, as described in the manuscript.
