Data from: Boreal toad survival varies by degree of attenuation and adaptation of a fungal pathogen
Data files
May 05, 2026 version files 29.43 KB
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README.md
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Strain_CJS_con_DRYAD.csv
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Abstract
Batrachochytrium dendrobatidis (Bd) is a fungal pathogen responsible for dramatic declines of amphibian populations around the world. Experimental exposure studies have documented differences in host susceptibility to Bd, but variation in study designs may limit our ability to compare inferences across studies. Using laboratory-maintained pathogen cultures that may lose virulence over time (i.e., pathogen attenuation) or exposing hosts to foreign or local strains are choices that could affect hosts differently. To test how these study design choices affect resulting inference, we exposed a vulnerable anuran species, the boreal toad (Anaxyrus boreas boreas), to three strains of Bd that varied in passage history and geographic origin and measured differences on host survival. We also examined strain-specific information reported in 58 publications of Bd exposure experiments to investigate the potential for reproducibility across studies. We found that boreal toads exposed to strains with many passes had higher weekly survival probabilities than those exposed to the strain with few passes, indicating likely pathogen attenuation in strains with higher passage history. We also found evidence for local adaptation of Bd to its host. Eighty-eight percent of the publications summarized did not report the number of Bd passages. Our findings suggest that strains with fewer passes in culture are better suited for exposure studies seeking to understand differences in host susceptibility and that the amount of passes can dramatically affect the inference gained across studies.
Dataset DOI: 10.5061/dryad.15dv41p6c
Description of the data and file structure
The Strain_CJS_Con_DRYAD.csv file is a file that generates a concatenated string in the last column that will input into the program MARK.
Files and variables
File: Strain_CJS_con_DRYAD.csv
Description:
Variables
- Filler_1: Required before identifier (id) for MARK software to separate individuals
- id: Individual animal ID
- Filler_2: Required after identifier (id) for MARK software to separate individuals
- Day 0: Alive (1) or dead (0) on the day of sampling
- Day 7: Alive (1) or dead (0) on the day of sampling
- Day 14: Alive (1) or dead (0) on the day of sampling
- Day 21: Alive (1) or dead (0) on the day of sampling
- Day 28: Alive (1) or dead (0) on the day of sampling
- WY_BUL: A 1 indicates the individual belonging to the Wyoming population and exposed to Batrachochytrium dendrobatidis (Bd) from the ColoradoFew strain. A 0 indicates not belonging to this population/treatment combination.
- WY_JEL: A 1 indicates the individual belonging to the Wyoming population and exposed to Batrachochytrium dendrobatidis (Bd) from the ColoradoMany strain. A 0 indicates not belonging to this population/treatment combination.
- WY_PAN: A 1 indicates the individual belonging to the Wyoming population and exposed to Batrachochytrium dendrobatidis (Bd) from the PanamaMany strain. A 0 indicates not belonging to this population/treatment combination.
- WY_CON: A 1 indicates the individual belonging to the Wyoming population and in the control group not exposed to Bd. A 0 indicates not belonging to this population/treatment combination.
- CO_BUL: A 1 indicates the individual belonging to the Colorado population and exposed to Batrachochytrium dendrobatidis (Bd) from the ColoradoFew strain. A 0 indicates not belonging to this population/treatment combination.
- CO_JEL: A 1 indicates the individual belonging to the Colorado population and exposed to Batrachochytrium dendrobatidis (Bd) from the ColoradoMany strain. A 0 indicates not belonging to this population/treatment combination.
- CO_PAN: A 1 indicates the individual belonging to the Colorado population and exposed to Batrachochytrium dendrobatidis (Bd) from the PanamaMany strain. A 0 indicates not belonging to this population/treatment combination.
- CO_CON: A 1 indicates the individual belonging to the Colorado population and in the control group not exposed to Bd. A 0 indicates not belonging to this population/treatment combination.
- Mass Day 0: Mass in grams of the individual measured on Day 0
- Mass Day 7: Mass in grams of the individual measured on Day 7
- Mass Day 14: Mass in grams of the individual measured on Day 14
- Mass Day 21: Mass in grams of the individual measured on Day 21
- Mass Day 28: Mass in grams of the individual measured on Day 28
- END: that indicates the end of the data string for each individual for MARK software
- Concatenated: The concatenated string of data for each individual. All rows of the concatenated column can then be copied into a text file to be used as the input file (.inp ending) for MARK software to read.
Code/software
Any software that can open a .csv file (e.g., Microsoft Excel or Google Sheets). Analyses were run in the program MARK. Note that input values of -99 indicate a fill-in value that signals to the program MARK to not treat the value as a real covariate. These are input when covariates cannot be measured for an individual because the individual is dead. A 0 would be inappropriate because the covariate would be read at a value of 0. -99 essentially marks missing data.
Access information
Data was derived from the following sources:
- All data were generated during a live animal experiment.
