Data and code from: Biogeographic patterns and drivers of endolithic symbiosis in mussels across Atlantic Europe and North Africa
Data files
Mar 10, 2026 version files 109.57 KB
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Endolithic_Symbiosis_in_Intertidal_Mussels.Rmd
90.31 KB
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infestationdata.RData
2.64 KB
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README.md
2.10 KB
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studysites.xlsx
14.51 KB
Abstract
This dataset includes the file infestationdata.RData, which provides records of mussel shell bioerosion, is stored in the column “infestation”. The degree of endolithic association was evaluated according to the classification in a previous study: Kaehler, S. (1999) Incidence and distribution of phototrophic shell-degrading endoliths of the brown mussel Perna perna. Mar. Biol., 135, 505-514. https://doi.org/10.1007/s002270050651 Shells with clean, intact periostracum and distinct periostracal striations (Group A); shells with central surface erosion, outer striations becoming indistinct (Group B); shells with erosion extending beyond the central portion, with grooves and pits appearing (Group C); shells heavily pitted, deformed, with almost completely absent periostracal striations (Group D); shells extremely pitted, brittle, and deformed, often with holes (Group E). For each mussel, the valve showing the highest level of endolithic bioerosion was used for classification. The dataset is structured to facilitate quantitative analyses of spatial patterns in endolithic infestation and can be reused for comparative biogeographic studies, methodological benchmarking, or integration into broader meta‑analyses of shell bioerosion and host-symbiont interactions. The accompanying R code provides reproducible workflows for data handling and analysis. All data were collected from wild mussels and do not involve protected species or sensitive human information, and no legal or ethical restrictions apply to their reuse.
Dataset DOI: 10.5061/dryad.18931zd8g
Description of the data and file structure
Files
- Endolithic Symbiosis in Intertidal Mussels.Rmd
- infestationdata.RData
- studysites.xlsx
Description
Endolithic_Symbiosis_in_Intertidal_Mussels.Rmd – This file contains the R code
infestationdata.RData – This file contains endolith-induced bioerosion levels sampled at 14 sites: Goodref (UKG) and Croyde (UKC) both in September 2017, Wimereux (FRW) in October 2024, Luc sur Mer (FRL) in September 2024, Viana do Castelo (PTV) and Malhão (PTM) both in May 2011 and April 2019, Cascais (PTC) and Vilamura (PTL) both in May 2011, and Larache (MLA), Sidi Bouzid (MSB), Essaouira (MES), Mirleft (MMI), Tarfaya (MTF) and Dakhla (MDK) all in October 2014. Columns: time (year-month), site (see abbreviations above), size (mussel size class in mm), infestation (bioerosion level), individuals (number of individuals)
studysites.xlsx – This file contains information on study sites, with column headers as follows:
- Country: United Kingdom (UK), France (FR), Portugal (PT), Morocco (MO)
- Site: Name of the study sites where samples were collected
- Code: 3-letter code for each study site
- Period: Year and month when samples were collected
- Coordinates: Geographic coordinates (Latitude North and Longitude West) in Degrees Minutes Seconds
- Latitude: Latitude in Decimal Degrees
- Longitude: Longitude in Decimal Degrees
- Year: Year when samples were collected
Related work
The 2011 data for Portugal are from a previous study: Marquet, N., Nicastro, K.R., Gektidis, M., McQuaid, C.D., Pearson, G.A., Serrão, E.A. & Zardi, G.I. (2013) Comparison of phototrophic shell-degrading endoliths in invasive and native populations of the intertidal mussel Mytilus galloprovincialis. Biol. Invasions, 15, 1253–1272. https://doi.org/10.1007/s10530-012-0363-1
