Data from: Temperature-sensitive cytoplasmic incompatibility across divergent Wolbachia largely reflects cifB transcription, not endosymbiont density
Data files
Jun 05, 2026 version files 3.70 MB
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8_genomes_plus_outgroups_extracted_genes.zip
1.29 MB
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dev-time-data.csv
14.21 KB
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mel_likes_plus_outgroup_cladogram_extracted_genes.zip
2.35 MB
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README.md
3.54 KB
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relative_chronogram.tre
1.69 KB
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temp-dep-CI-cifB_data.csv
12.76 KB
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temp-dep-ci-hatch-data.csv
29.97 KB
Abstract
Maternally transmitted Wolbachia bacteria are common in insects, with many strains altering host reproduction through cytoplasmic incompatibility (CI). CI kills embryos fertilized by Wolbachia-bearing males unless those embryos also carry Wolbachia, which favors females with Wolbachia and drives the endosymbiont to higher frequencies in host populations. Strong CI now underpins successful applications that rely on maintaining pathogen-blocking Wolbachia transinfections in vector populations to reduce arboviral disease transmission. Temperature modulates CI strength (the proportion of embryos killed), with consequences for Wolbachia prevalence in natural and transinfected populations. Yet the mechanisms regulating temperature-sensitive CI-strength variation are poorly understood. We quantified CI strength across eight divergent Drosophila-associated Wolbachia strains at four temperatures (18°C–26°C), while characterizing development time, Wolbachia and Wovirus densities, and transcription of the CI-inducing gene cifB. Four of eight Wolbachia strains exhibited temperature-sensitive CI, three of which induced CI at multiple temperatures. Of these three, two expressed significantly more cifB at the temperature yielding stronger CI, whereas testes Wolbachia density did not predict CI strength. Notably, cifB-transcript levels were consistently decoupled from Wolbachia and Wovirus densities, suggesting that cifB transcription is not regulated solely by symbiont abundance. We also report temperature-sensitive rescue of CI, Wolbachia-associated developmental acceleration, and strain-specific Wovirus-Wolbachia covariance. Our findings reveal temperature as a pervasive modulator of Wolbachia-host interactions at multiple levels and extend evidence that cifB transcription partly predicts variable CI strength across strain identities, male ages, and now temperatures. CI variation unaccounted for by cifB transcription points toward additional regulatory or post-transcriptional mechanisms that we discuss.
Dataset DOI: 10.5061/dryad.18931zdbf
Description of the data and file structure
Files and variables
File: relative_chronogram.tre
Description: Relative time calibrated phylogeny of Wolbachia strains
File: dev-time-data.csv
Description: Egg-to-adult development time data
Variables
- Strain: Wolbachia strain name
- Temperature: Rearing temperature (°C)
- Cytotype: Wolbachia infection status (infected or uninfected)
- Vial_number: Replicate vial identifier
- Dateofeggincubation: Date eggs were placed in incubation (MM/DD/YYYY)
- Adultemergence: Date of adult emergence (Month-DD and MM/DD/YYYY)
- Timetaken: Development time from egg incubation to adult emergence (days)
File: temp-dep-CI-cifB_data.csv
Description: cifB transcript levels from ddPCR
Variables
- Experiment: Experimental batch or run identifier
- Well: ddPCR plate well position
- Strain: Wolbachia strain name
- Temperature: Rearing temperature (°C)
- ID: Biological sample identifier
- Primerset: Primer set used for amplification
- Target: Target gene assayed
- Conc_copies_uL: Transcript concentration (copies/µL) as calculated by ddPCR software
- DyeName(s): Fluorescent dye or channel used for detection
- Accepted Droplets: Total number of accepted droplets per well
- Positives: Number of positive droplets per well
- Negatives: Number of negative droplets per well
File: temp-dep-ci-hatch-data.csv
Description: Embryonic hatch rate data
Variables
- Replicate: Biological replicate number
- Strain: Wolbachia strain name
- Temperature: Rearing temperature (°C)
- Cross: Mating cross direction (female x male); UU = uninfected x uninfected, UI = uninfected x infected, II = infected x infected
- total_eggs: Total number of eggs per replicate cross
- hatched: Number of hatched eggs per replicate cross
- unhatched: Number of unhatched eggs per replicate cross
File: 8_genomes_plus_outgroups_extracted_genes.zip
Description: FASTA files of genes used to construct the phylogeny in Fig. 1A. The "individual_genes" folder contains one FASTA file per gene, with each file including sequences from all strains in the analysis. Filenames display the relevant locus tag. The concatenated_singlecopy_full_length_genes.fasta file contains the concatenated alignment of all genes included in the analysis.
File: mel_likes_plus_outgroup_cladogram_extracted_genes.zip
**Description: FASTA files of genes used to construct the phylogeny in Fig. S1. The "individual_genes" folder contains one FASTA file per gene, with each file including sequences from all strains in the analysis. Filenames display the relevant locus tag. The concatenated_singlecopy_full_length_genes.fasta file contains the concatenated alignment of all genes included in the analysis.
Code/software
The relative_chronogram (.tre) file can be viewed with any text editor or tree visualization software such as FigTree (v1.4.4). The .csv data files can be viewed with any text editor or spreadsheet software. All statistical analyses and figure generation were performed in R. The R scripts used for analysis are available via the GitHub repository linked in the manuscript.
