Data and code from: Infanticide is driven by unfamiliarity with offspring location and associated with androgenic shifts in mimic poison frogs
Data files
Jul 15, 2026 version files 944.08 KB
-
aggression_day_final.R
2.80 KB
-
Compiled_ELISAs_with_CV.xlsx
538.61 KB
-
CORT_inter-assay_CV.csv
550 B
-
CORT_intra-assay_CV.csv
1.59 KB
-
CORT_plate_1.csv
24.96 KB
-
CORT_plate_2.csv
23.86 KB
-
CORT_plate_3_lastvaladded.csv
23.59 KB
-
CORT_plate_3.csv
23.91 KB
-
CORT_plate_4.csv
24.82 KB
-
CORT_plate_5.csv
25.09 KB
-
CORT_plate_6.csv
24.31 KB
-
egganalysis_final.R
7.22 KB
-
eggexperiments.xlsx
13.27 KB
-
README.md
11.50 KB
-
T_inter-assay_CV.csv
674 B
-
T_intra-assay_CV.csv
1.63 KB
-
T_plate_1_lastvaladded.csv
26.45 KB
-
T_plate_1.csv
22.31 KB
-
T_plate_2.csv
22.46 KB
-
T_plate_3.csv
22.24 KB
-
T_plate_4.csv
22.51 KB
-
T_plate_5.csv
22.59 KB
-
T_plate_6.csv
22.49 KB
-
Table_of_Contents.csv
1.39 KB
-
takeover_hormones_paired_final_v5.xlsx
27.10 KB
-
takeovers_aggressionday_cleaned.xlsx
6.13 KB
Abstract
Infanticide is widespread across the animal kingdom, but the physiological drivers of infanticide versus care or neglect are relatively unexplored. Here, we identified salient environmental and physiological antecedents of infanticide in the mimic poison frog (Ranitomeya imitator), a biparental amphibian in which female parents feed their tadpoles unfertilized eggs. Specifically, we explored potential environmental cues influencing infant-directed behavior by evaluating changes in the frequency of food provisioning and tadpole mortality after either cross-fostering tadpoles between family units or displacing tadpoles within the terraria of their parents. We found that changes in offspring location reduce care and increase infanticide. Specifically, parents fed their displaced offspring less and, in some instances, tadpole mortality increased. We also investigated whether care and infanticide were related to changes in steroid hormone concentrations in an unfamiliar setting. Infanticide of fertilized eggs and hatchlings in the new territory included cannibalism and was associated with lower testosterone concentrations, but not with changes in corticosterone. Overall, our results support earlier findings that familiarity with offspring location drives parental investment in poison frogs, while indicating an association between low androgen levels and infanticidal behavior in an amphibian.
https://doi.org/10.5061/dryad.1c59zw43m
Amaris R. Lewis¹†, Billie C. Goolsby¹†, Bryan H. Juarez¹, Madison P. Lacey¹, Lauren A. O'Connell¹*
¹ Stanford University
Last updated by Billie Goolsby at Stanford University (bgoolsby@stanford.edu)
Description of the data and file structure
These datasets contain the raw data from our offspring-manipulation behavior experiments, our takeover behavior experiments, and our hormone measurement recordings. Feel free to peruse our data, code, and supplementary data.
Conventions used throughout
Missing values. All empty cells have been filled with NA. NA is used in two senses, and the intended meaning is given per column below:
- Not applicable — the variable does not apply to that row (e.g.,
diff_fromisNAfor cross fosters, positive controls, and spatial-move animals, because a cross-morph comparison is not meaningful for them). - Not available / not measured — a value that was not collected or could not be measured for that individual/sampling event (e.g., a hormone value for a sample that was not run or fell below the assay's detection limit).
Where an empty cell in a spreadsheet was left blank because filling it with NA could interfere with the analysis scripts, that column is noted below; in those cases the blank is equivalent to not available.
A small number of measurements that were blank in the takeover data file were recovered from earlier data versions and filled in with their true values; all remaining blanks that could not be recovered from any source were set to NA (not available).
Units. Units for every measured variable are given in the column descriptions below. In brief: mass in grams (g), snout–vent length in millimeters (mm), volume in milliliters (mL), hormone concentrations in picograms per milliliter (pg/mL), coefficients of variation (CV) as percentages (%), and counts (eggs, siblings) as whole numbers. Categorical variables (IDs, morphs, tanks, sex, behavior, outcome) and dates have no units; date format is YYYY-MM-DD.
Cell colors / formatting. Some cells in the raw ELISA file appear in different background colors. This coloring is the native output of the plate-reader software and is reproduced here exactly as the instrument generated it, so that the raw data are preserved unaltered. The colors carry no additional analytical meaning and can be safely ignored, with one exception: highlighting is used to flag samples whose coefficient of variation (CV) was above our acceptable threshold. No other coloring in any file encodes information.
eggexperiments.xlsx — offspring-manipulation experiments
One sheet. Columns:
id— identity of the focal tadpole. Categorical (no unit).eggs— number of eggs fed to the focal tadpole over 2 weeks. Count (whole number).morph— morph of the focal tadpole. Categorical.diff_from— whether the tadpole differs from the mother or father in the cross-morph context. Categorical.NA= not applicable (used for cross fosters, positive controls, and spatial-move animals).tank— tank in which the tadpole was raised, as a cross foster or as a control/displacement group. Categorical.mom— morph of the adoptive mother relative to the focal tadpole. Categorical.dad— morph of the adoptive father relative to the focal tadpole. Categorical.siblings— number of tadpoles present while the focal tadpole was being raised. Count (whole number).eggsnormalizedbysib—eggsdivided bysiblings. Dimensionless ratio. We did not proceed with this analysis, because it is unclear whether dividing by siblings (as opposed to square-rooting or another method) is most appropriate; nonetheless, it agrees with this manuscript's findings.
takeover_hormones_paired_final_v5.xlsx — takeover assays and hormones
Five sheets: all, all_cv_under_15, outcomes, Males, Females. We use all for our analyses. all_cv_under_15 is the subset of all restricted to samples whose assay coefficient of variation (CV) was below 15%. outcomes reports the behavioral outcome that occurred for each individual. Males and Females are all split by sex. (Six empty, unlabeled columns that trailed the all sheet in earlier versions have been removed.)
Within all, there are 21 columns:
tube— the individual eluate for each sample, subdivided for the CORT and TEST plates. Categorical (no unit).id— identity of the frog. Categorical.sex— sex of the frog. Categorical (M/F).event— sampling event:baseline,move, orfinal. Categorical.behavior— specific behaviors the frog performed during the trial. Categorical (free text).outcome— whether the frog was infanticidal or not. Categorical.origin_tank— original tank of the frog. Categorical.new_tank— experimental tank the frog was placed in. Categorical.mass— recorded mass of the frog at each sampling event. Units: grams (g).length— snout–vent (S–V) length of the frog. Units: millimeters (mm).TEST— testosterone concentration measured by ELISA. Units: picograms per milliliter (pg/mL).volume— water volume, monitoring any variation in spillage from the original 40 mL the frog was sitting in. Units: milliliters (mL).CORT— corticosterone concentration measured by ELISA. Units: picograms per milliliter (pg/mL).TEST_CV— intra-sample coefficient of variation for the testosterone measurement. Units: percent (%).CORT_CV— intra-sample coefficient of variation for the corticosterone measurement. Units: percent (%).avg_mass— average mass of the frog across the trial. Units: grams (g).CORT_plate_number— which CORT plate the sample was run on. Categorical/index (no unit).CORT_plate_date— date the CORT plate was run. Date (YYYY-MM-DD).T_plate_number— which testosterone plate the sample was run on. Categorical/index (no unit).T_plate_date— date the testosterone plate was run. Date (YYYY-MM-DD).outcomebinary— numeric coding ofoutcome(0 = not infanticidal, 1 = infanticidal). Binary (no unit).
Where a hormone value (TEST, CORT) or its CV is NA, the sample was not measured or fell below the assay's detection limit (not available).
takeovers_aggressionday_cleaned.xlsx — selected data for cannibalistic individuals
One sheet. Columns:
id— frog identity. Categorical (no unit).aggression_day— day of the trial on which the animal behaved aggressively. Units: day (integer index).sex— sex of the frog. Categorical (M/F).testbase— baseline testosterone level. Units: pg/mL.testmove— testosterone level 24 h after moving. Units: pg/mL.lengthmove— snout–vent length of the frog 24 h after moving. Units: millimeters (mm).massmove— mass of the frog 24 h after moving. Units: grams (g).testfinal— final testosterone measurement. Units: pg/mL.cortbaseline— baseline corticosterone level. Units: pg/mL.cortmove— corticosterone level 24 h after moving. Units: pg/mL.cortfinal— final corticosterone measurement. Units: pg/mL.ratiobaseline— ratio of CORT to testosterone (CORT/T) at baseline. Dimensionless ratio.ratiomove— ratio of CORT to testosterone (CORT/T) 24 h after moving. Dimensionless ratio.logratiomove— natural-log transformation ofratiomove. Dimensionless (log ratio).
Compiled_ELISAs_with_CV.xlsx and the Compiled_ELISAs_with_CV_CSV/ folder — raw ELISA output
The raw values from our ELISA runs, along with the coefficient of variation (CV) derived from each run. Hormone concentrations are in picograms per milliliter (pg/mL) and CV values are in percent (%).
This dataset is provided in two forms for accessibility and ease of reuse:
-
Compiled_ELISAs_with_CV.xlsx— the original formatted Excel workbook. It contains 19 sheets: a Table of Contents; the inter- and intra-assay CV summaries for corticosterone (CORT) and testosterone (T); and the individual plate readouts (CORT plate 1–6andT plate 1–6, plus two_lastvaladdedsheets that append the final samples run on plates that had spare wells). Each plate sheet reproduces the plate reader's native 96-well output (optical-density readings and derived concentrations). -
An unformatted, plain-text (CSV) version of the same data. Because a single CSV file cannot hold multiple sheets, each sheet of the workbook is exported as its own
.csvfile, named after the sheet. The values are identical to the.xlsx; only the cell background colors are dropped (see "Cell colors / formatting" above — those colors are the plate reader's native output and carry no analytical meaning, except that highlighting in the.xlsxflags samples whose CV exceeded our acceptable threshold). The individual CSV files are:Table_of_Contents.csv— contents of the workbook.CORT_inter-assay_CV.csv— corticosterone inter-assay CV (%).T_inter-assay_CV.csv— testosterone inter-assay CV (%).CORT_intra-assay_CV.csv— corticosterone intra-assay (duplicate) CV (%).T_intra-assay_CV.csv— testosterone intra-assay (duplicate) CV (%).CORT_plate_1.csv,CORT_plate_2.csv,CORT_plate_3.csv,CORT_plate_3_lastvaladded.csv,CORT_plate_4.csv,CORT_plate_5.csv,CORT_plate_6.csv— raw 96-well plate readouts for each corticosterone ELISA plate. The_lastvaladdedfile appends the final sample(s) run on a plate that had spare wells.T_plate_1.csv,T_plate_1_lastvaladded.csv,T_plate_2.csv,T_plate_3.csv,T_plate_4.csv,T_plate_5.csv,T_plate_6.csv— raw 96-well plate readouts for each testosterone ELISA plate.
Within each plate CSV, hormone concentrations are in pg/mL and optical-density readings are unitless; the
plate_rowcolumn holds the plate row letter (A–H) or block label, and thefieldcolumn identifies the row type (Well ID,Conc/Dil, orName).
Figures
These diagnostic and supplementary figures accompany the analyses.
corticosterone_DHARMa.png— DHARMa residual diagnostics (QQ plot and residual-vs-predicted plot) for the corticosterone model; no significant deviations detected.testosterone_bymasslengthvolume.png— testosterone concentration (pg/mL) plotted against body mass (g), snout–vent length (mm), and water volume (mL), with Pearson correlations, to check for confounding by body size or sample volume.corticosterone_bymasslengthvolume.png— corticosterone concentration (pg/mL) plotted against body mass (g), snout–vent length (mm), and water volume (mL), with Pearson correlations.
Sharing / Access information
Our non-peer-reviewed preprint is available at https://doi.org/10.1101/2024.04.11.589025 under a CC-BY-NC-ND 4.0 International license. Our manuscript, figures, and supplementary figures/data are available here under Zenodo as Supplementary files.
Code / Software
The R code needed to run our analyses is as follows:
aggression_day_final.Regganalysis_final.Rhormones_analysis_final_v5.R
Animal husbandry
All R. imitator eggs and tadpoles in this study were captive-bred in our colony. Adults were purchased from Indoor Ecosystems between 2019-2021 (Whitehouse, Ohio) or Ruffing’s Ranitomeya between 2021-2023 (Tiffin, Ohio, USA). Breeding pairs were housed in 30 x 30 x 45 cm terraria containing sphagnum moss substrate, driftwood, live plants, egg deposition sites, and film canisters filled with water for tadpole deposition. Terraria were automatically misted ten times daily, and frogs were fed live Drosophila fruit flies dusted with Repashy Calcium Plus (Oceanside, CA, USA) three times per week and springtails once a week. All procedures in this study were approved by the Stanford University Animal Care and Use Committee (Protocol #34242).
Offspring recognition assays
Tadpoles used in this study were observed in home or foster terraria as described (all with the same dimensions and substrates). Ranitomeya imitator pairs used for this study were required to have previously successfully raised a tadpole within 31 days of the experiment. Locations of tadpole deposition were marked on the outside of the terrarium with the date and time to ensure consistency in placing tadpole canisters in the same location throughout the duration of the study. Tadpoles were randomly placed into three experimental conditions (Fig. 1A): same-morph cross-foster (n = 16 across 6 terraria), different-morph cross-foster (n = 12 across 5 terraria), or intra-tank displacement (n = 18 across 7 terraria). Control tadpoles (n = 26 across 11 terraria) served as a measure of parental investment under normal conditions.
We observed tadpoles in each trial for 14 days and measured trophic egg deposits as a proxy for parental investment. We randomized treatments across tadpoles, using individuals below Gosner stage 32 (Gosner, 1960) to avoid counting feeding patterns that resulted from changes in investments as tadpoles neared metamorphosis. We collected data for every tadpole under controlled conditions before randomly applying treatments. Sampling multiple (one to four) tadpoles per terrarium allowed us to capture focal pair variation in parental care.
Tadpoles were always transported in their respective canisters to retain any tadpole-specific olfactory cues already present in the water and to minimize stress. Tadpoles displaced within their parents’ terraria (“intra-tank displacement”) were moved at a minimum of 5 cm and a maximum of 30 cm, depending on availability on the terrarium floor. We purposely selected a minimum distance greater than 2 cm, as this was the minimum distance for indirect offspring discrimination identified in other poison frogs (Stynoski, 2009). Tadpoles were moved either to a laterally opposite corner of the terrarium or elsewhere along the terrarium edge. When undergoing this manipulation, tadpoles were always moved to a location not previously occupied by a canister.
"Takeover” behavioral assays
We designed an assay to identify hormonal changes in infanticidal versus non-infanticidal parents during a simulated territory takeover based on Ringler et al. (2017). We selected paired adults that raised at least one offspring in their terrarium within 31 days of the takeover trial as a proxy for parental experience and reproductive status. Frogs from the same reproductive pair were put into separate takeover trials at the same time to mitigate any risk of mate absence influencing behavior directed toward offspring. The takeover terrarium had the same dimensions, with elements of the environment (vegetation, replacement of dead leaves and substrate, fresh water) disrupted and replaced to introduce unfamiliarity. Rearrangements and cleaning occurred between trials. Takeover terraria always housed at least two tadpole canisters, one upright and filled with water and the second empty and sideways, to remove bias for water availability and shelter, respectively. At the beginning of each trial, frogs were provided with a dish of springtails available ad libitum for the length of the trial and were provided with fruit flies on the same schedule as their home tanks.
While baseline hormone collection of the adult occurred, we placed a single, unrelated fertilized late-stage egg to hatchling (Gosner stage 19-22) on a leaf on the terrarium floor. The leaf was positioned below a Wyze Cam v3 to record behavior using previously described methods (Goolsby et al., 2023). Frogs (n = 12 females, 12 males) were introduced to the terrarium and recorded for a maximum of seven days. Infanticidal behavior was characterized as either consumption of the fertilized egg or hatchling (Supplementary Video 1) or as repetitive physical disturbances to the egg, where the snout repeatedly dug at the jelly-like casing in what we interpreted as an attempt at egg cannibalism impeded by the encasement (Supplementary Video 2).
Steroid hormone collection and processing
We collected hormones immediately before displacing frogs to the new tank (“baseline”), 24 ± 3 hours later (“move”), and following infanticide or tadpole transport, or after seven days if no such behavior occurred (“final”), with hormone collections occurring at approximately the same time of day or immediately following infanticide (Fig. 2A-B). Three subjects demonstrated infanticide on the day after displacement, so hormone measurements counted for both “move” and “final” sampling events. Baseline collection always occurred between 11:30 AM and 2:30 PM to avoid confounding effects of circadian physiology on hormone concentrations. We ultimately analyzed data from 59 samples across 22 individuals.
As shown in previous studies with poison frogs and other amphibians (Gabor et al., 2013; Baugh et al., 2018; Baugh and Gray-Gailliard, 2021; Rodríguez et al., 2022; Love et al., 2023), water-borne testosterone and corticosterone were collected as a non-invasive measurement that reflects circulating levels of both hormones. Frogs were individually moved to a Petri dish containing 40 mL of distilled water treated with reverse osmosis conditioner to prevent osmotic stress (Josh’s Frogs RO R/x, Osowo, MI, USA). After 60 minutes, we measured body length (snout-vent length) using a digital caliper (Shahe Measuring Tools, Amazon) and body mass using a Maxus precision pocket scale (sensitivity 200 x 0.01 g, Amazon). We also measured mass at each hormone sampling event, then averaged to account for variations related to body fluctuations.
We pre-extracted steroid hormones using Sep-Pak C18 cartridges (Waters, Milford, MA, USA). The cartridges were conditioned using 2 mL of 100% ethanol, followed by 2 mL of Milli-Q water treated with reverse osmosis conditioner. Water samples were pushed through the column at a rate of approx. 10mL/minute, and then eluted with 4 mL of 100% ethanol. Ethanolic extracts were stored in glass vials at 4 ℃ until nitrogen evaporation. One day prior to hormone quantification, the 4 mL of eluted hormone samples were divided into 2 mL new glass tubes for separate corticosterone and testosterone analyses from the same frog. The 2 mL tubes were placed in a 37 ℃ water bath and evaporated with gentle N2 gas flow. After evaporation, hormone samples were resuspended in 250 μl of assay buffer specific to the corresponding ENZO kit and stored at 4 ℃ overnight until analysis the following day.
Steroid hormone quantification via enzyme-linked immunosorbent assays (ELISA)
After overnight incubation at 4 ℃, samples were warmed to room temperature, and corticosterone and testosterone concentrations were determined using commercially available ELISA kits (ENZO Life Sciences, Farmingdale, NY; Corticosterone: cat. no. ADI-900-097, antibody: donkey anti-sheep IgG, sensitivity: 27.0 pg/mL; Testosterone: cat. no. ADI-900-065, antibody: goat anti-mouse IgG, sensitivity: 5.67 pg/mL) according to the manufacturer's instructions. We chose to analyze corticosterone rather than cortisol concentrations because corticosterone is suspected to be the main adrenocorticotropic hormone (ACTH)-responsive glucocorticoid for R. imitator (Cockrem, 2013; Westrick et al., 2023). Samples were vortexed, and 100 µL of the samples were added in duplicate in individual wells of microtiter plates. Following manufacturer instructions, plates were read at 405 nm, with correction between 570 and 590 nm, using a microplate reader (Synergy H1, BioTek Instruments, Winooski, VT, USA). Hormone concentrations were calculated using a four-parameter logistic curve in the software Gen5 (version 3.05, BioTek Instruments, Winooski, VT, USA). Samples with duplicate measurements that yielded a coefficient of variation (CV) > 30% were excluded from later analyses (corticosterone: 7 of 59 samples, 11.9%; testosterone: 2 of 59 samples, 3.4%). Before removing these duplicates, intra-assay CV values for corticosterone and testosterone were 14.0% and 10.0%. After removal, intra-assay CV values were 8.4% and 9.4%. Inter-assay CV values were 11.8% and 13.7%.
Statistics
We cleaned and analyzed all data using RStudio (R version 4.2.3, R Core Team, Boston, MA). We implemented all statistical analyses using a generalized linear mixed model (GLMM) framework. For each analysis, we used the Akaike Information Criterion corrected for small sample sizes (AICc; Burnham and Anderson, 2004) to choose between alternative model fits. We evaluated standard model diagnostics and tested for outliers and quantile deviations using the ‘DHARMa’ package (version 0.4.6, Hartig, 2022). All models in this manuscript passed all diagnostic tests. To evaluate the significance of main effects, we performed a Type III analysis of variance with Satterthwaite’s method. We evaluated pairwise comparisons and accounted for multiple comparisons using the Tukey method in the ‘emmeans’ package (version 1.9.0, Lenth, 2023). We estimated effect sizes in multi-termed modeling using the ‘effectsize’ package (version 0.8.6, Ben-Shachar et al., 2020) and with pairwise effect size comparisons using ‘emmeans’. Figures were created using the package ‘ggplot2’ (version 3.4.4, Wickham, 2016) and assembled in Adobe Illustrator (Adobe Illustrator 2023).
Offspring manipulations
We analyzed the number of eggs deposited for each tadpole among the four experimental conditions (Fig. 1A). To test whether egg deposition changes due to cross-fostering and intra-tank displacement, we used a GLMM with a zero-inflation component implemented using the ‘glmmTMB’ package (version 1.1.8, Brooks et al., 2017). We chose a Poisson distribution based on best fit, with eggs fed as a dependent variable, experiment type and number of siblings within a terrarium as independent variables, and focal terrarium as a random effect.
Takeover trials
To determine how testosterone, corticosterone, and testosterone: corticosterone ratios change relative to infanticidal behavior, we implemented a GLMM using the ‘lmerTest’ package (3.1-3, Kuznetsova et al., 2017). We set the outcome (“infanticide” vs “non-infanticide”), sampling event (“baseline” vs. “move” vs. “final”), sex, and their interactions as fixed effects and individual frog identity, average individual mass, volume of collection water, and body length (snout-vent length) as random effects. We selected this method rather than linearly normalizing by mass, body length, or water collection volume following correlation analyses (Figs. S1-2). We estimated average individual mass as the average body mass across sampling events, as this was necessary to account for intra-individual differences in feeding. Since mass was not collected for one individual frog, we used mean imputation to estimate the single missing value as the averaged individual mass across the entire study. To improve interpretation of regression coefficients, we removed insignificant interaction terms using stepwise backward regression.
We ran separate models for testosterone and corticosterone. We were additionally interested in ratios of testosterone to corticosterone, results for which are available in the supplement (Figs. S3-4; Tables S1-3). We selected appropriate data transformations (natural log, square root, inverse, no transformation) for modeling each dependent variable using AICc. Using AICc and diagnostic criteria, we selected a log transformation for corticosterone and an inverse transformation for testosterone. Ratios were modeled using the untransformed testosterone and corticosterone values to compute an initial ratio value, which was then log-transformed. Because corticosterone, testosterone, and ratio values of samples exceeding the CV threshold of 30% are deemed unreliable, we treated these values as missing data. All of our final models passed all diagnostic tests.
