Data and code from: Home range shifts and habitat selection across life-history stages in grey partridges
Data files
May 08, 2026 version files 920.80 KB
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Data_Code_Laux_etal_2026_WildlifeBiology.zip
910.40 KB
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README.md
10.40 KB
Abstract
Dataset DOI: 10.5061/dryad.1g1jwsvcq
Description of the data and file structure
Dates of data collection:
2009/03/05 - 2014/02/23
2016/02/10 - 2018/03/21
Geographic location of data collection:
District of Göttingen, Germany
Files descriptions and variables
File: Data_Code_Laux_etal_2026_WildlifeBiology.zip
Description: Contains all data files and R code. The data files are necessary to run the R code. Missing data is shown as NA. Please see the above-mentioned paper for detailed information on data sampling and processing.
File: RScript_Laux_etal_2026_WildlifeBiology.R
Description: R-script containing the code used for the analysis in the manuscript 'Home range shifts and habitat selection across life-history stages in grey partridges'.
File: distance_tagging_nest.csv
Description: Contains the distances between tagging sites and nest sites.
- distance - distance between tagging site and nest in m
- nest_id - unique identifier for each nest
- par_id - unique identifier for each tagged partridge
- year - year of tagging and nest
File: ctmm_homerange_results.csv
Description: Contains sizes, confidence intervals and degrees of freedom for home ranges (95% UD) and core areas (50% UD).
- hr_id - unique identifier for each home range
- par_id - unique identifier for each individual
- sex - sex of the individual
- year - year of the observation
- season - life-history stage: breeding, pairs= pair formation, winter
- n_fixes - number of location fixes per home range
- est_95 - estimated home range (95% UD) size
- low_95 - lower confidence limit (95% CI) of home range size
- high_95 - upper confidence limit (95% CI) of home range size
- DOF_area_95 - degrees of freedom for area for the home range
- DOF_bw_95 - degrees of freedom for the bandwidth for the home range
- est_50 - estimated core area (50% UD) size
- low_50 - lower confidence limit (95% CI) of core area size
- high_50 - upper confidence limit (95% CI) of core area size
- DOF_area_50 - degrees of freedom for area for the core area
- DOF_bw_50 - degrees of freedom for the bandwidth for the core area
File: homerange_overlap_BA.csv
Description: Contains overlap between seasonal home ranges.
- par_id - unique identifier for each individual
- hr_1 - first home range of the comparison
- hr_2 - second home range of the comparison
- BA_est - Bhattacharyya Coefficient
- BA_CI_low - lower confidence limit (95% CI) of Bhattacharyya Coefficient
- BA_CI_high - upper confidence limit (95% CI) of Bhattacharyya Coefficient
- DOF - degrees of freedom
- comparison - seasons that are compared
File: corearea_overlap_percent.csv
Description: Contains overlap between seasonal core areas.
- par_id - unique identifier for each individual
- hr_1 - first home range of the comparison
- hr_2 - second home range of the comparison
- hr_1_area - area in ha for the first home range
- hr_2_area - area in ha for the second home range
- overlap_area - overlap in ha between both home ranges
- ov_percent_hr_1 - overlap in percent of home range 1
- ov_percent_hr_2 - overlap in percent of home range 2
- comparison - seasons that are compared
File: corearea_centroid_distance.csv
Description: Contains distances between core area centroids.
- par_id - unique identifier for each individual
- hr_1 - first home range of the comparison
- hr_2 - second home range of the comparison
- distance - distance in m between centroids of home range 1 and 2
- comparison - seasons that are compared
File: rsf_breeding_III.csv
Description: Contains used and available points for third-order habitat selection during breeding.
- hr_id - unique identifier for each home range
- par_id - unique identifier for each individual
- season - life-history stage: breeding
- landuse - land-use type: arable, grassland, fallowAES, margin, woody, permanent
- status - binary, 1 = used point, 0 = available point
- weight - weight per point used in the logistic regression
- arable - binary dummy variable for arable, 1 = yes, 0 = no
- grassland - binary dummy variable for grassland, 1 = yes, 0 = no
- fallowAES - binary dummy variable for fallowAES, 1 = yes, 0 = no
- margin - binary dummy variable for margin, 1 = yes, 0 = no
- woody - binary dummy variable for woody, 1 = yes, 0 = no
- permanent - binary dummy variable for permanent, 1 = yes, 0 = no
- IDpar - numeric version of par_id
- IDhr - numeric version of hr_id
- IDhr1 - duplicate of IDhr for use in resource selection functions
- IDhr2 - duplicate of IDhr for use in resource selection functions
- IDhr3 - duplicate of IDhr for use in resource selection functions
- IDhr4 - duplicate of IDhr for use in resource selection functions
- IDhr5 - duplicate of IDhr for use in resource selection functions
File: rsf_winter_III.csv
Description: Contains used and available points for third-order habitat selection in winter.
- hr_id - unique identifier for each home range
- par_id - unique identifier for each individual
- season - life-history stage: winter
- landuse - land-use type: arable, grassland, fallowAES, margin, woody, permanent
- status - binary, 1 = used point, 0 = available point
- weight - weight per point used in the logistic regression
- arable - binary dummy variable for arable, 1 = yes, 0 = no
- grassland - binary dummy variable for grassland, 1 = yes, 0 = no
- fallowAES - binary dummy variable for fallowAES, 1 = yes, 0 = no
- margin - binary dummy variable for margin, 1 = yes, 0 = no
- woody - binary dummy variable for woody, 1 = yes, 0 = no
- permanent - binary dummy variable for permanent, 1 = yes, 0 = no
- IDpar - numeric version of par_id
- IDhr - numeric version of hr_id
- IDhr1 - duplicate of IDhr for use in resource selection functions
- IDhr2 - duplicate of IDhr for use in resource selection functions
- IDhr3 - duplicate of IDhr for use in resource selection functions
- IDhr4 - duplicate of IDhr for use in resource selection functions
- IDhr5 - duplicate of IDhr for use in resource selection functions
File: rsf_breeding_II.csv
Description: Contains used and available points for second-order habitat selection during breeding.
- hr_id - unique identifier for each home range
- par_id - unique identifier for each individual
- season - life-history stage: breeding
- landuse - land-use type: arable, grassland, fallowAES, margin, woody, permanent
- status - binary, 1 = used point, 0 = available point
- weight - weight per point used in the logistic regression
- arable - binary dummy variable for arable, 1 = yes, 0 = no
- grassland - binary dummy variable for grassland, 1 = yes, 0 = no
- fallowAES - binary dummy variable for fallowAES, 1 = yes, 0 = no
- margin - binary dummy variable for margin, 1 = yes, 0 = no
- woody - binary dummy variable for woody, 1 = yes, 0 = no
- permanent - binary dummy variable for permanent, 1 = yes, 0 = no
- IDpar - numeric version of par_id
- IDhr - numeric version of hr_id
- IDhr1 - duplicate of IDhr for use in resource selection functions
- IDhr2 - duplicate of IDhr for use in resource selection functions
- IDhr3 - duplicate of IDhr for use in resource selection functions
- IDhr4 - duplicate of IDhr for use in resource selection functions
- IDhr5 - duplicate of IDhr for use in resource selection functions
File: rsf_winter_II.csv
Description: Contains used and available points for second-order habitat selection during winter.
- hr_id - unique identifier for each home range
- par_id - unique identifier for each individual
- season - life-history stage: winter
- landuse - land-use type: arable, grassland, fallowAES, margin, woody, permanent
- status - binary, 1 = used point, 0 = available point
- weight - weight per point used in the logistic regression
- arable - binary dummy variable for arable, 1 = yes, 0 = no
- grassland - binary dummy variable for grassland, 1 = yes, 0 = no
- fallowAES - binary dummy variable for fallowAES, 1 = yes, 0 = no
- margin - binary dummy variable for margin, 1 = yes, 0 = no
- woody - binary dummy variable for woody, 1 = yes, 0 = no
- permanent - binary dummy variable for permanent, 1 = yes, 0 = no
- IDpar - numeric version of par_id
- IDhr - numeric version of hr_id
- IDhr1 - duplicate of IDhr for use in resource selection functions
- IDhr2 - duplicate of IDhr for use in resource selection functions
- IDhr3 - duplicate of IDhr for use in resource selection functions
- IDhr4 - duplicate of IDhr for use in resource selection functions
- IDhr5 - duplicate of IDhr for use in resource selection functions
File: landuse_homerange.csv
Description: Contains the proportion of each land-use type per home range area.
- hr_id - unique identifier for each home range
- par_id - unique identifier for each individual
- year - year of the observation
- season - life-history stage: winter
- landuse - land-use type: arable, grassland, fallowAES, margin, woody, permanent
- use_prop - proportion of the home range covered by the land-use type
File: landuse_locations.csv
Description: Contains the proportion locations in each land-use type per home range.
- hr_id - unique identifier for each home range
- par_id - unique identifier for each individual
- year - year of the observation
- season - life-history stage: winter
- landuse - land-use type: arable, grassland, fallowAES, margin, woody, permanent
- use_prop - proportion location in the land-use type
Code/software
The R-script contains the code used for the analysis in 'Home range shifts and habitat selection across life-history stages in grey partridges'.
The data files are necessary to run the R code. The R-script was developed using version R 4.5.2 and uses the following packages:
- glmmTMB 1.1.13
- DHARMa 0.4.7
- performance 0.15.0
- emmeans 2.0.0
- boot 1.3-32
- dplyr 1.1.4
- INLA 25.10.19
Access information
Other publicly accessible locations of the data:
- N/A
Data was derived from the following sources:
- N/A
