Data from: Alternate day fasting attenuates metabolic dysfunction-associated arterial thrombotic risk via increasing indole-3-propionic acid
Data files
Sep 02, 2026 version files 4.47 MB
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Fecal_metagenomic_genus_level.csv
460.86 KB
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Fecal_metagenomic_species_level.csv
2.38 MB
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phosphoproteomic_DES.csv
1.11 MB
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Plasma_metabolomic.csv
252.82 KB
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README.md
6.55 KB
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taxa_table_genus.csv
259.09 KB
Abstract
Metabolic dysfunction-associated arterial thrombosis poses a major health challenge worldwide. Emerging studies have highlighted the metabolic benefits of alternate day fasting (ADF), providing insight into its potential therapeutic effect on thrombotic events. Here, we show that ADF attenuates platelet hyperreactivity and thrombotic tendency in obese mice by reshaping the gut microbiota.Further metabolomic analysis identify indole-3-propionic acid (IPA), a gut microbial derived metabolite, as key contributor of thrombosis-ameliorating effects of ADF. Mechanistically, IPA preserves the intraplatelet Rho-GTPase cycle homeostasis and suppresses downstream signaling pathways, thus inhibiting the platelet activation cascade and alleviating thrombus formation without affecting hemostasis in vivo. Moreover, patients with metabolic disturbance-associated arterial thrombosis exhibit significantly lower plasma IPA levels, which demonstrates strong predictive value for thrombotic risk and inversely correlates with platelet reactivity. Here, we show ADF’s protective role in metabolic dysfunction-associated thrombogenesis and validate IPA as a safe, effective antithrombotic agent with novel mechanistic insights.
Dataset DOI: 10.5061/dryad.1vhhmgr60
Description of the data and file structure
- For the dietary intervention study, male C57BL/6J mice (6-week-old) were randomly divided into 4 groups : (1) Control (Ctrl): standard experimental diet for 12 weeks; (2) High fat diet (HFD): diet consisting of 60 % fat for 12 weeks; (3) ADF: HFD for 6 weeks, followed by a feeding regimen of every other day with HFD for the subsequent 6 weeks; (4) Paired feeding (PF): HFD for 6 weeks, followed by feeding with equivalent daily food intake to the ADF group with HFD for the next 6 weeks. The plasma samples were collected for metabolomics analysis and cecal feces were collected for metagenomic sequencing.
- For fecal microbes transplantation (FMT) study, the male C57BL/6J mice received antibiotic cocktail to remove the original gut microbiota. Then, the mice were given fecal microbiota suspension from above HFD and ADF groups for 2 weeks. The cecal feces were collected for metagenomic sequencing.
- Mice washed platelet samples were maintained in a resting state or stimulated with thrombin for 3 min with or without IPA preincubation. Protein samples were extracted for further phosphorylated proteome analysis.
Files and variables
File: Plasma_metabolomic.csv
Description: Plasma metabolites levels in different samples
Variables
- Index: Metabolites index labelled by metware company
- Compounds: Metabolites name
- Class I: Primary category
- Class II: Secondary category
- Molecular weight (Da): Molecular weight
- Formula: Formula
- CD-1: sample 1 from control group
- CD-2: sample 2 from control group
- CD-3: sample 3 from control group
- CD-4: sample 4 from control group
- CD-5: sample 5 from control group
- HFD-1: sample 1 from high fat diet group
- HFD-2: sample 2 from high fat diet group
- HFD-3: sample 3 from high fat diet group
- HFD-4: sample 4 from high fat diet group
- HFD-5: sample 5 from high fat diet group
- ADF-1: sample 1 from alternate day fasting group
- ADF-2: sample 2 from alternate day fasting group
- ADF-3: sample 3 from alternate day fasting group
- ADF-4: sample 4 from alternate day fasting group
- ADF-5: sample 5 from alternate day fasting group
- PF-1: sample 1 from pair feeding group
- PF-2: sample 2 from pair feeding group
- PF-3: sample 3 from pair feeding group
- PF-4: sample 4 from pair feeding group
File: Fecal_metagenomic_genus_level.csv
Description: Gut microbiota genus levels in different samples
Variables
- Index: genus name
- CD-1: sample 1 from control group
- CD-2: sample 2 from control group
- CD-3: sample 3 from control group
- CD-4: sample 4 from control group
- CD-5: sample 5 from control group
- HFD-1: sample 1 from high fat diet group
- HFD-2: sample 2 from high fat diet group
- HFD-3: sample 3 from high fat diet group
- HFD-4: sample 4 from high fat diet group
- HFD-5: sample 5 from high fat diet group
- ADF-1: sample 1 from alternate day fasting group
- ADF-2: sample 2 from alternate day fasting group
- ADF-3: sample 3 from alternate day fasting group
- ADF-4: sample 4 from alternate day fasting group
- ADF-5: sample 5 from alternate day fasting group
- PF-1: sample 1 from pair feeding group
- PF-2: sample 2 from pair feeding group
- PF-3: sample 3 from pair feeding group
- PF-4: sample 4 from pair feeding group
- Taxonomy: genus category
File: Fecal_metagenomic_species_level.csv
Description: Gut microbiota species levels in different samples
Variables
- Index: genus name
- CD-1: sample 1 from control group
- CD-2: sample 2 from control group
- CD-3: sample 3 from control group
- CD-4: sample 4 from control group
- CD-5: sample 5 from control group
- HFD-1: sample 1 from high fat diet group
- HFD-2: sample 2 from high fat diet group
- HFD-3: sample 3 from high fat diet group
- HFD-4: sample 4 from high fat diet group
- HFD-5: sample 5 from high fat diet group
- ADF-1: sample 1 from alternate day fasting group
- ADF-2: sample 2 from alternate day fasting group
- ADF-3: sample 3 from alternate day fasting group
- ADF-4: sample 4 from alternate day fasting group
- ADF-5: sample 5 from alternate day fasting group
- PF-1: sample 1 from pair feeding group
- PF-2: sample 2 from pair feeding group
- PF-3: sample 3 from pair feeding group
- PF-4: sample 4 from pair feeding group
- Taxonomy: species category
File: phosphoproteomic_DES.csv
Description: Protein phosphorylation levels in different samples
Variables
- Index: Amino acid residue(s) and position(s) of post-translational modification (PTM) sites on the protein
- Accession: Protein accession number in the protein database
- Description: Protein functional description
- Gene: Gene name corresponding to the protein
- Peptide: Amino acid sequence of the protein
- V1: resting condition sample 1
- V2: resting condition sample 2
- V3: resting condition sample 3
- V4: resting condition sample 4
- V5: resting condition sample 5
- VT1: thrombin stimulation sample 1
- VT2: thrombin stimulation sample 2
- VT3: thrombin stimulation sample 3
- VT4: thrombin stimulation sample 4
- VT5: thrombin stimulation sample 5
- IPAT1: IPA preincubation and thrombin stimulation sample 1
- IPAT2: IPA preincubation and thrombin stimulation sample 2
- IPAT3: IPA preincubation and thrombin stimulation sample 3
- IPAT4: IPA preincubation and thrombin stimulation sample 4
- IPAT5: IPA preincubation and thrombin stimulation sample 5
File: taxa_table_genus.csv
Description: Gut microbiota genus levels in different samples
Variables
- #genus: genus name
- F_HFD1: sample 1 of mice receiving feces from HFD mice
- F_HFD2: sample 2 of mice receiving feces from HFD mice
- F_HFD3: sample 3 of mice receiving feces from HFD mice
- F_ADF1: sample 1 of mice receiving feces from ADF mice
- F_ADF2: sample 2 of mice receiving feces from ADF mice
- F_ADF3: sample 3 of mice receiving feces from ADF mice
- F_ADF4: sample 4 of mice receiving feces from ADF mice
- F_ADF5: sample 5 of mice receiving feces from ADF mice
- taxonomy: genus category
Code/software
No specialized software is required. The data are provided in CSV format and can be viewed using standard spreadsheet software.
