Data from: The effect of simulated intergroup encounters on movement patterns and home range use in banded mongooses
Data files
Mar 27, 2026 version files 8.65 MB
-
finalhomerangedata.csv
6.65 MB
-
GPS_Analysis_code_for_review.R
21.04 KB
-
GPSDates_and_days_for_upload.csv
47.73 KB
-
homerangedata_gpscollars.csv
1.84 MB
-
Mongoose_experiment_locations_per_day.csv
1.20 KB
-
Rainfall_GPSCollar.csv
56.13 KB
-
README.md
14.44 KB
-
Tablet_GPS_Analysis_code_for_review.R
16.47 KB
Abstract
Intergroup conflicts have a wide range of impacts, including affecting movement and ranging patterns. Previous studies found contrasting movement responses to intergroup conflicts, but no explanation for these differences has been suggested. However, these can be broadly grouped into “conflict avoidance” responses: avoiding areas close to the fight, and “defence” responses: “patrolling” and using the edges of the group’s territory. We experimentally simulated intergroup encounters in banded mongoose groups to assess whether mongooses respond to intergroup encounters by avoiding conflict or investing in defence. We measured movement characteristics, path characteristics in the core vs periphery of the home range, and changes to home range use. We found that mongooses spend more time in the core during the day after presentations, and after presentations, groups moved further and faster when in the periphery. However, these effects were similar in both control and experimental trials, potentially because control stimuli were also perceived as threats by the mongooses. Overall, our results suggest that our presentation of stimuli affects the use of the home range over a single day, but not in the next seven days, suggesting a limited longer-term impact of conflict on mongoose behaviour. This finding raises questions as to how intergroup conflicts impact social groups in the long term.
Dataset DOI: 10.5061/dryad.1zcrjdg7g
Description of the data and file structure
Data were collected for this study from banded mongooses on the Mweya Peninsula in Queen Elizabeth National Park, Uganda (0 ° 12’S, 29 ° 54’E), between January 2016 and May 2017. One to two individuals in a social group were fitted with a GPS collar weighing 24-41g (Gipsy4 and Gipsy5, Technosmart, Italy), to allow group movements to be recorded.
We carried out simulated intrusion presentations and control presentations with five focal groups (which were habituated to being followed). Simulated intrusion presentations involved presenting a focal group with rival scents (urine, faeces, and scent marks), rival "war-cry" auditory playbacks, and live rival mongooses (kept separated by cages). Control presentations mirrored these with non-threatening stimuli (scents from own group, own group "close calls", and live own-group individuals in cages). Experimental trials took place over 15 days, with simulated intrusion or control presentations on the 8th day, and more intensive observation in the five central days. Across this timeline, we collected movement data from the focal mongoose group using two methods. First, we collected broad-scale data using GPS collars (Gipsy4 and Gipsy5 collars, Technosmart, Italy), which collected data continuously (details in movement data section below). Second, we collected fine-scale data using tablet computers held by observers (Samsung Galaxy Note 10.1 tablets, Samsung, South Korea), which collected data during hourly behavioural observations of the mongoose group during the five central days of the experiment.
For tablet GPS data, the total distance (sum of the distances between fixes), mean speed, the displacement (distance from the first point in the path to the final point), and tortuosity (a ratio of the total distance travelled and the displacement of the animal) were calculated.
The collar GPS data were analysed not simply as path characteristics, but as path characteristics in relation to the area of the territory in which the movement was taking place. Home ranges were calculated for the three months preceding the day of each presentation, using the collar GPS data and autocorrelated kernel density estimations. In this analysis, the GPS fix was categorised as either in the “core” of the territory (< 0.50 cumulative probability of use) or in the “peripheral” area of the territory (>= 0.50 cumulative probability of use). The total distance for travel in the core and in the periphery was calculated as the sum of distances between fixes categorised as either core or peripheral. The mean speed was calculated as the mean speed value for fixes categorised as either core or peripheral.
For both collar and table, the GPS home range characteristics (mean area used, time spent in each area of the territory, change in location in the territory) were calculated. The mean cumulative probability of use was calculated for each day of GPS data and each hour or tablet data. For each hour (tablet data) or each day (collar data), the percentage of time spent in the “core” territory was also calculated. The difference between the starting location and the end location was also calculated (starting location cumulative probability of use – end location cumulative probability of use) to indicate whether a group moved closer to the core of the territory (indicated by a positive number) or closer to the periphery (indicated by a negative number) by the end of the observation.
Files and variables
File: GPSDates_and_days_for_upload.csv
Description: Summary information about the dates of the experiment, including treatment type, number of individuals present, and time point in the experiment
Variables
- Day: A character identifier to represent the day of a particular experiment (includes pack identifier, experimental trial identifier (round), and time in the experiment (DayID)
- Pack: Name of the pack being observed (1B, 1H, 2, 11, or 26)
- Round: Identifier for the experimental trial (includes pack name, and repeat number, R indicates a simulated intrusion/treatment trial, and C indicates a control trial)
- Date: Calendar date (dd/mm/yyyy)
- Treatment: Treatment type, Treatment = a simulated intrusion presentation, Control = a control presentation took place during the trial.l
- Time: Time in the experiment, Before = before a presentation took place, During = day of a presentation, After = after a presentation took place
- DayID: Time in the experiment in terms of day in relation to the experimental presentation. Presentations took place on Day 0; negative days are before, positive are after, with the number indicating the number of days.
- ID: Combination of Round and DayID variables
- RoundTime: Combination of Round and Time variables
- AMPrestime: The time (HH: MM) that a presentation took place in the morning of the given day (morning presentations included scents and playbacks). Only present on Day 0/During days when presentations took place, otherwise listed as NA.
- AMLat: The latitude of a presentation's location (if known). Only present on Day 0/During days when presentations took place, otherwise listed as NA.
- AMLong: The latitude of a presentation's location (if known). Only present on Day 0/During days when presentations took place, otherwise listed as NA.
- PMPrestime: The time (HH: MM) that a presentation took place in the afternoon of the given day (afternoon presentations were of live individuals). Only present on Day 00/During days when presentations took place, otherwise listed as NA.
- PMLat: The latitude of a presentation's location (if known). Only present on Day 0/During days when presentations took place, otherwise listed as NA.
- PMLong: The latitude of a presentation's location (if known). Only present on Day 00/During days when presentations took place, otherwise listed as NA.
File: Mongoose_experiment_locations_per_day.csv
Description: A summary file of where presentations took place (core <0.50 CDF, or periphery >0.5 CDF)
Variables
- Round: Identifier for the experimental trial (includes pack name, and repeat number, R indicates a simulated intrusion/treatment trial, and C indicates a control trial)
- PresLocation: Location of the presentation in the AM (morning) and PM (afternoon), in relation to the home range. Options: AMCore, AMPeriphery, PMCore, PMPeriphery
- PresLocationSummary: Summary of the location data, indicating whether presentations were both in the core (Core), both in the periphery (Periphery), or one in each area (Mix) of the home range.
File: homerangedata_gpscollars.csv
Description: GPS collar data from the experimental dates, including information on treatment type, pack, round, and where in the home range the location lies.
Variables
- date: Date (dd/mm/yyyy)
- deployment: identifier for the collar deployment
- scheduled.time: time that the GPS fix was scheduled for (HH:MM:SS)
- scheduled.date.time: date and time that the GPS fix was scheduled for (dd/mm/yyyy HH: MM)
- pack: Name of the pack in which the collar was deployed (1B, 1H, 2, 11, or 26)
- collar: identifier for the collar
- indiv: Name of the individual on whom the collar was deployed
- date.time: date and time that the GPS fix was taken (dd/mm/yyyy HH: MM)
- latitude: latitude of the GPS fix
- longitude: longitude of the GPS fix
- altitude: altitude of the GPS fix
- speed: speed at the time of the GPS fix (according to the collar) - not used in analysis
- num.sats: number of satellites the fix was based on
- hdop: Horizontal dilution of precision
- gsv: detailed satellite data
- debug: debug codes
- date.deployed: date (dd/mm/yyyy) the collar was deployed on the individual
- date.removed: date (dd/mm/yyyy) the collar was removed from the individual
- date.first.fix: date (dd/mm/yyyy) the collar took the first fix
- date.last.fix: date (dd/mm/yyyy) the collar took the last fix
- model: model of the GPS collar
- folder: location of original raw GPS file
- Day: day in relation to the experiment (contains round identifier only)
- Treatment: Treatment type, Treatment = a simulated intrusion presentation, Control = a control presentation took place during the trial
- Pack: Name of the pack being observed (1B, 1H, 2, 11, or 26)
- Round: Identifier for the experimental trial (includes pack name, and repeat number, R indicates a simulated intrusion/treatment trial, and C indicates a control trial)
- Time: Time in the experiment, Before = before a presentation took place, During = day of a presentation, After = after a presentation took place
- week_HR: cumulative probability of use value extracted from the home range of the pack being observed. Based on the previous week's home range (in relation to the date of the presentation)
- month_HR: cumulative probability of use value extracted from the home range of the pack being observed. Based on the previous month's home range (in relation to the date of the presentation)
- threemonth_HR: cumulative probability of use value extracted from the home range of the pack being observed. Based on the previous three months' home range (in relation to the date of the presentation)
- week_Area: NA - calculated using code
- month_Area: NA - calculated using code
- threemonth_Area: NA - calculated using code
File: finalhomerangedata.csv
Description:
Variables
- X: rowname (numeric identifier)
- Datetime: date and time that the GPS fix was taken (dd/mm/yyyy HH: MM)
- time: date and time that the GPS fix was taken (dd/mm/yyyy HH: MM)
- lat: latitude of the GPS fix
- long: longitude of the GPS fix
- text: text associated with the GPS fix (automatically populated by the app on the tablet collecting the data)
- parent: name of the tablet collecting the data
- Day: date (dd/mm/yyyy)
- Pack: Name of the pack being observed (1B, 1H, 2, 1,1 or 26)
- Round: Identifier for the experimental trial (includes pack name, and repeat number, R indicates a simulated intrusion/treatment trial, and C indicates a control trial)
- Treatment: Treatment type, Treatment = a simulated intrusion presentation, Control = a control presentation took place during the trial
- Time: Time in the experiment, Before = before a presentation took place, During = day of a presentation, After = after a presentation took place
- ID: Identifier to represent the day of a particular experiment (includes pack identifier, experimental trial identifier (round), and time in the experiment (DayID), and time of day (AM or PM)
- RoundTime: a combination of the Round and Time variables
- Tablet: name of tablet data was collected on
- week_HR: cumulative probability of use value extracted from the home range of the pack being observed. Based on the previous week's home range (in relation to the date of the presentation)
- month_HR: cumulative probability of use value extracted from the home range of the pack being observed. Based on the previous month's home range (in relation to the date of the presentation)
- threemonth_HR: cumulative probability of use value extracted from the home range of the pack being observed. Based on the previous three months' home range (in relation to the date of the presentation)
- week_Area: area being used (Core or Periphery/Overlap). Based on the previous week's home range (in relation to the date of the presentation)
- month_Area: area being used (Core or Periphery/Overlap). Based on the previous month's home range (in relation to the date of the presentation)
- threemonth_Area: area being used (Core or Periphery/Overlap). Based on the previous three months' home range (in relation to the date of the presentation)
File: Rainfall_GPSCollar.csv
Description:
Variables
- Row: rowname (numeric identifier)
- Day: A character identifier to represent the day of a particular experiment (includes pack identifier, experimental trial identifier (round), and time in the experiment (DayID))
- Pack: Name of the pack being observed (1B, 1H, 2, 11, or 26)
- Round: Identifier for the experimental trial (includes pack name, and repeat number, R indicates a simulated intrusion/treatment trial, and C indicates a control trial)
- Date: date (dd/mm/yyyy)
- Treatment: Treatment type, Treatment = a simulated intrusion presentation, Control = a control presentation took place during the trial.l
- Time: Time in the experiment, Before = before a presentation took place, During = day of a presentation, After = after a presentation took place
- DayID: Time in the experiment in terms of day in relation to the experimental presentation. Presentations took place on Day 0; negative days are before, positive are after, with the number indicating the number of days.s
- ID: Combination of Round and DayID variables
- RoundTime: Combination of Round and Time variables
- Rainfall: rainfall recorded in the study area in the previous 30 days
- Breeding.status: breeding status of the pack (oestrus, pregnancy, babysitting, escorting, non-breeding)
- No.inpack: number of individuals present in the pack on that day
- ID.merge: identifier for days in the experiment (for merging datasets)
Code/software
Statistical analysis was performed in R 4.1.1.
Packages were:
lme4; move; stringr; emmeans; car; dplyr; effects; cowplot; FSA; ggplot2
Code for analysing GPS collar data uses Tablet_GPS_Analysis_code_for_review.R and the following datasets:
homerangedata_gpscollars.csv (GPS collar data fixes), GPSDates and days.csv (dates and summary data), Rainfall_GPSCollar.csv (rainfall and other pack-related data), Mongoose experiment locations per day.csv (locations of presentations)
Code for analysing GPS tablet data uses GPS_Analysis_code_for_review.R, and the following datasets:
finalhomerangedata.csv (tablet GPS fixes), Rainfall_GPSCollar.csv (rainfall and other pack-related data), Mongoose experiment locations per day.csv (locations of presentations)
Both pieces of code are included as files.
Access information
Other publicly accessible locations of the data:
- NA
Data was derived from the following sources:
- Raw GPS collar fixes
