Co-assembly of Metagenome Assembled Genome of the alkaliphilic Cyanobacterium sp. PNNL-SSL1
Data files
Mar 03, 2026 version files 179.47 MB
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README.md
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SSL1_coassembly_megahits.fa_assembly_v1.json
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SSL1_coassembly_megahits.fa_assembly.fa
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Abstract
We present the Metagenome Assembled Genome of the alkaliphilic Cyanobacterium sp. strain PNNL-SSL1 obtained from Soap Lake (Washington, USA). The PNNL-SSL1 MAG was obtained by sequencing the metagenomes of two xenic cultures dominated by PNNL-SSL1 named SSL1-A and SSL1-B. Sequencing reads were filtered and assembled into contigs as a co-assembly using MEGAHIT (v1.2.9). The co-assembly of PNNL-SSL1 can be found in this dataset.
Dataset DOI: 10.5061/dryad.31zcrjf28
Description of the data and file structure
The Metagenome Assembled Genome (MAG) of Cyanobacterium sp. strain PNNL-SSL1 was obtained from a co-assembly of its MAGs from two xenic cultures named SSL1-A and SSL1-B. The Sequencing reads were filtered and assembled into contigs as a co-assembly using MEGAHIT (v1.2.9). In this dataset, you can find the co-assembly used in the Microbiology Resource Announcements Journal publication for "Metagenome Assembled Genome of the Alkaliphilic Cyanobacterium sp. PNNL-SSL1".
Files and variables
File: SSL1_coassembly_megahits.fa_assembly_v1.json
Description: metadata of the "SSL1_coassembly_megahits.fa_assembly.fa" file.
File: SSL1_coassembly_megahits.fa_assembly.fa
Description: assembled contigs as a co-assembly using MEGAHIT (v1.2.9)
Code/software
This file can be used as the reference co-assembly of The Metagenome Assembled Genome (MAG) of Cyanobacterium sp. strain PNNL-SSL1.
Access information
Other publicly accessible locations of the data:
- This Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession JBSZCP000000000
Data was derived from the following sources:
- SSL1-A (SRX29282892)
- SSL1-B (SRX29282893)