Intraspecific seed competition and genetic diversity within the capsule fruits of Aristolochia contorta
Data files
Mar 04, 2025 version files 15.99 MB
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rawdata_Acontorta.xlsx
15.98 MB
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README.md
2.68 KB
Abstract
1. Genetic diversity and competitive dynamics are crucial in shaping plant communities. However, these dynamics have not been examined thoroughly in the context of seed position within a fruit. This study integrated genetic analysis and seed competition experiments to understand genetic diversity and competitive dynamics within Aristolochia contorta. By combining molecular markers and seed competition trials, we aimed to deduce the roles of genetic factors and seed position in influencing seedling success, facilitating a comprehensive assessment of both genetic and environmental contributions to growth patterns in this species. 2. Centrally positioned seeds showed superior growth and germination rates due to their larger size and weight, providing a competitive edge over peripheral seeds, highlighting the influence of seed position on nutrient allocation and competition during germination. 3. Regarding fruit orientation during sowing, vertically upward-sown fruits showed the highest number of shoots per fruit, suggesting that the physical orientation of the fruit may influence early seedling growth. This result emphasizes the importance of environmental factors (such as light exposure and soil contact) in determining the success of early-stage seedlings. 4. Genetic diversity was low within and among fruits, with genetic differentiation also being low among groups. Most genetic variation was observed within individuals rather than between groups, indicating a relatively homogeneous genetic structure within the population. The low genetic diversity may be attributed to the species' reproductive strategies, particularly the low efficiency of pollinators, which restricts gene flow and variation. 5. In summary, these results suggest that non-genetic factors, such as environmental conditions and seed position, play a significant role in seedling success and competitive interactions. Our findings provide valuable insights into evolutionary biology and conservation strategies of A. contorta. The observed low genetic diversity highlights potential challenges for the species in adapting to environmental changes. Our findings remain robust despite the small sampling size and the use of whole seeds for DNA extraction. They emphasize the importance of considering environmental factors and seed position in conservation efforts.
https://doi.org/10.5061/dryad.3ffbg79vw
Description of the data and file structure
This dataset contains measurements related to seed traits, collective and individual sowing experiments, and filtered SNP data for Aristolochia contorta. It was collected as part of a study on seed competition and genetic diversity.
Files and variables
Files in this dataset
rawdata_Acontorta.xlsx: Main dataset containing multiple sheets:- Seed traits: Measurements of individual seed traits.
- Collective sowing: Results from group sowing experiments.
- Individual sowing: Results from individually sown seeds.
- Individual sowing germination: Germination outcomes of individually sown seeds.
- Filtered SNP: SNP data after filtering.
Variables and Abbreviations
Seed Traits
Fruit: Fruit ID from which the seed was collected.Seed order: Order of the seed within the fruit.Seed length(mm): Seed length in millimeters.Seed weight(mg): Seed weight in milligrams.
Collective Sowing
Days after germination: Number of days post-germination.No. of shoots: Count of shoots at each observation time.Stem length: Stem length measured in millimeters.
Individual Sowing
Seed order: Seed order within the fruit.Stem length(cm): Stem length in centimeters.No. of leaves: Number of leaves observed.
Individual Sowing Germination
Seed order: Seed order within the fruit.Germination(1.Yes, 0.No): Whether the seed germinated (1 = Yes, 0 = No).
Filtered SNP
SNP info: ID of the SNP.pos: SNP position.ref: Reference allele.SNP matrix: Allele call for different samples.Total_allele: Count of alleles (Reference + Alternative + Heterozygous).Major_allele_frequency: Frequency of the major allele.Minor_allele_frequency: Frequency of the minor allele.Heterozygosity: Proportion of heterozygous sites.PIC: Polymorphic information content.Genic/Intergenic: Whether the SNP is in a gene or intergenic region.Flanking sequence: 600bp flanking sequence around the SNP.
Code/software
Software Requirements
- The dataset is provided in
.xlsxformat and can be opened with Microsoft Excel, R, or Python (pandaslibrary). - SNP analysis may require specialized bioinformatics tools such as PLINK or TASSEL.
Access information
Other publicly accessible locations of the data:
- Not applicable
Data was derived from the following sources:
- Not applicable
