Data from: Veronica paczoskiana is no more than a pine forest ecotype of V. spicata that evolved independently in forest-steppes of Ukraine and the Altai region
Data files
Dec 11, 2025 version files 55.77 MB
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map.txt
2.19 KB
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Paczoskiana_Bayesean-Inferred.tre
19.17 KB
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Paczoskiana_MaximumLikelihood.tree
1.38 KB
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README.md
2.30 KB
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Veronica_paczoskiana.nex
55.74 MB
Abstract
The Eurasian steppe area has been a dynamic vegetation type during the Pleistocene with its repeated cycles of forest advances and retreats. Such a scenario allows the evolution of ecotypes at the ecotone with the potential for parallel evolution in different parts of the distribution area. We test this hypothesis using the forest steppe/steppe herb Veronica spicata, based on results from genotyping-by-sequencing and pollen morphology. We provide evidence that the forest-living paczoskiana-morphotype evolved independently in Ukraine (the type locality in central Ukraine) and the Altay region, but potentially also elsewhere. Pollen morphology of 26 herbarium specimens was studied using both light microscopy and scanning electron microscopy. Pollen grains are 3(4)-colpate and 3-colporate, suboblate to prolate (P/E = 0.82–1.75) in shape; small- and medium-sized. Pollen grains of forest ecotypes were usually smaller in size (mean 20.74 × 18.72 µm) than pollen of grassland V. spicata (mean 23.79 × 20.98 µm). Lack of an indumentum, reddish stem color, and smaller pollen seem to be parallel adaptations to the shadier and more acidic soil in these forests. The dynamic history of the forest-steppe zone in Eurasia during the Pleistocene provides a compelling scenario supporting the convergent evolution of this morphotype.
https://doi.org/10.5061/dryad.3j9kd51wf
Dataset Summary
This dataset supports the study “Veronica paczoskiana is no more than a pine forest ecotype of V. spicata that evolved independently in forest-steppes of Ukraine and the Altai region” (DOI link). It includes genomic and phylogenetic data used to assess the evolutionary status of Veronica paczoskiana within the V. spicata complex.
Description of Data and File Structure
- map.txt – Sample metadata and accession mapping
- Paczoskiana_Bayesean-Inferred.tre – Bayesian phylogenetic tree
- Paczoskiana_MaximumLikelihood.tree – Maximum likelihood phylogenetic tree
- Veronica_paczoskiana.nex – Nexus file containing aligned loci for phylogenetic analysis
The dataset comprises 38 accessions representing the morphological diversity of V. spicata, including outgroup taxa (V. incana, V. pinnata, V. spuria). Genomic DNA was extracted from dried material using the innuPREP Plant DNA Kit (Analytic Jena AG, Germany), and quality was assessed via gel electrophoresis and photometry (TECAN Infinite F200 Pro).
Ploidy was determined for 22 accessions via flow cytometry (Meudt et al. 2015); data for 16 accessions were unavailable due to insufficient material or poor quality (CV > 8 %).
RAD-Seq libraries were prepared following Elshire et al. (2011) using the methylation-insensitive enzyme MSII, with protocol modifications from Siadjeu et al. (2018). Libraries were sequenced at LGC Genomics (Berlin, Germany).
Reads were assembled using IPYRAD v.0.9.96, optimized for reference-free phylogenomic analysis. Key parameters included:
- Phred score offset: 33
- Sequence similarity threshold: 85 %
- Barcode mismatches: 0
- Adapter filtering: strict
- Indel limit: 5 per locus
- Minimum depth: 6×
- Loci retained if present in ≥ 30 % of individuals
Code/Software Used
- FastQC, MultiQC – Raw data quality control
- IPYRAD v.0.9.96 – Locus assembly and filtering
- IQ-TREE v.2.3.6, jModelTest v.2, MrBayes v.3.2.2 – Phylogenetic inference
The Eurasian steppe area has been a dynamic vegetation type during the Pleistocene with its repeated cycles of forest advances and retreats. Such a scenario allows the evolution of ecotypes at the ecotone with the potential for parallel evolution in different parts of the distribution area. We test this hypothesis using the forest steppe/steppe herb Veronica spicata, based on results from genotyping-by-sequencing and pollen morphology. We provide evidence that the forest-living paczoskiana-morphotype evolved independently in Ukraine (the type locality in central Ukraine) and the Altai region, but potentially also elsewhere. Pollen morphology of 26 herbarium specimens was studied using both light microscopy and scanning electron microscopy. Pollen grains are 3(4)-colpate and 3-colporate, suboblate to prolate (P/E = 0.82–1.75) in shape; small- and medium-sized. Pollen grains of forest ecotypes were usually smaller in size (mean 20.74 × 18.72 µm) than pollen of grassland V. spicata (mean 23.79 × 20.98 µm). Lack of an indumentum, reddish stem color, lower specific leaf area, and smaller pollen seem to be parallel adaptations to the shadier and more acidic soil in these forests. The dynamic history of the forest-steppe zone in Eurasia during the Pleistocene provides a compelling scenario supporting the convergent evolution of this morphotype.
