Ascites reprograms innate lymphoid immune cells in ovarian cancer by promoting ILC2 enrichment and dysfunctional NK-cell states
Data files
Apr 27, 2026 version files 112.92 MB
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asc.NK.rds
112.92 MB
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README.md
1.30 KB
Jul 17, 2026 version files 112.92 MB
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asc.NK.rds
112.92 MB
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README.md
1.30 KB
Abstract
Background Ovarian cancer (OC) is the most lethal gynecologic malignancy, with disease progression critically shaped by the tumor microenvironment. Ascitic fluid constitutes a complex cellular and soluble niche that promotes tumor growth and immune evasion; however, the innate lymphoid landscape within OC ascites remains poorly characterized.
Methods We performed single-cell RNA sequencing of natural killer (NK) cells isolated from OC ascites to resolve innate immune heterogeneity and differentiation states. Functional assays assessed NK cell cytotoxicity, degranulation, and receptor expression following exposure to ascites, with or without transforming growth factor-β (TGF-β) blockade. Proteomic profiling was used to define the ascites cytokine milieu.
Results We identified eight distinct NK/innate lymphoid subclusters spanning cytotoxic, precursor, early-like, tolerant/immunoregulatory, regulatory, proinflammatory, and innate lymphoid cell (ILC) states. OC ascites were characterized by depletion of cytotoxic and precursor NK cells and enrichment of early-like, tolerant, regulatory, and proinflammatory populations. Pseudotime trajectory analysis revealed impaired maturation toward terminally differentiated cytotoxic NK cells. Notably, a functionally exhausted innate lymphoid cell 2 (ILC2) population accumulated in ascites and was associated with poor progression-free survival. Exposure of healthy donor NK cells to ascites impaired degranulation and killing of OVCAR-4 cells, reduced activating receptor expression (NKp30, DNAM-1), increased inhibitory receptor expression (PD-1, LAG-3, TIGIT), and induced a shift toward CD56highCD16low NK cells. Proteomic profiling revealed an immunosuppressive, type-2–polarized cytokine milieu enriched in TGF-β and ILC2-promoting mediators. Pharmacological TGF-β blockade partially restored NKp30/DNAM-1–dependent NK cell cytotoxicity.
Conclusions OC ascites establishes a type-2–skewed immunoregulatory niche that coordinately drives NK cell dysfunction and ILC2 accumulation. These findings provide a systems-level framework linking ascites-derived cues to innate immune remodeling and identify actionable pathways for restoring antitumor immunity in ovarian cancer.
Dataset DOI: 10.5061/dryad.4b8gthtt7
Description of the data and file structure
This data contains seurat object in RDS format in R.
Metadata:
Sample_Name:
SP = Healthy Control
OC = Ovarian Cancer
Condition:
HC = Healthy Control
Cancer = Ovarian Cancer
asc.NK.rds = Seurat object in RDS format in R
Files and variables
Metadata:
Sample_Name:
SP = Healthy Control
OC = Ovarian Cancer
Condition:
HC = Healthy Control
Cancer = Ovarian Cancer
asc.NK.rds = Seurat object in RDS format in R
Code/software
R Studio
Access information
Other publicly accessible locations of the data:
- N/A
Data was derived from the following sources:
- N/A
Human subjects data
Data Consent and De-identification Statement
All participants provided explicit informed consent for their data to be shared publicly in a de-identified form. Prior to release, all datasets were de-identified by removing personal identifiers and any information that could reasonably be used to re-identify individuals. Data are shared only in de-identified and non-linkable formats, and no re-identification keys are included.
