Data and code from: Solo culture of echinoid larvae allows quantification of genetic and maternal contributions to food-conditioned phenotypic plasticity in ciliated band length
Data files
Sep 11, 2026 version files 58.73 KB
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Dendraster_heritability_and_maternal_effect_analysis_FINAL.R
16.67 KB
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Plasticity_heritability_data_FINAL.csv
39.29 KB
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README.md
2.78 KB
Abstract
The feeding larvae of many echinoderms develop long ciliated bands (which serve as food-capturing structures) when reared in low-food environments, and short ciliated bands when reared in high-food environments. This response has been studied for ~40 years, but because of limits to sample size imposed by traditional culture methods, the shape of the reaction norm is poorly characterized, and the extent to which reaction norm characteristics are determined by additive genetic variance and maternal effects is poorly understood. We used a paternal half-sib mating design and a novel method of rearing larvae individually to describe the shape and inheritance of the reaction norm in larvae of the sand dollar Dendraster excentricus. Each of 20 males was mated to two unique females, and offspring from all crosses were fed the alga Rhodomonas sp. at concentrations ranging from 1000-10,000 cells mL-1 for four days. The experiment thus started with a total of 400 larvae, 10 from each of 40 families (20 sires crossed with 40 dams). Mortality and other losses meant that the final dataset included 332 larvae. At 5 days post-fertilization, we measured larval midline body length, mean postoral arm length, and ciliated band length. We then used an animal model analysis to estimate genetic and maternal effect contributions to variation in CBL reaction norms. The mean reaction norm was non-linear, with a ~17% decline in ciliated band length from 1000 to ~6000 cells ml-1 but little change at higher food levels. Additive genetic variation in elevation and shape explained ~18% of observed variation in reaction norms, while maternal effects explained ~13% of observed variation. The same analysis conducted on postoral arm length showed similar results. The reaction norm for larval phenotypic plasticity in D. excentricus thus seems likely to be moderately responsive to natural selection. The culture method introduced here may be useful in describing and analyzing reaction norms in diverse marine invertebrate larvae.
Dataset DOI: 10.5061/dryad.4f4qrfjv2
Description of the data and file structure
Measurements of larvae of Dendraster excentricus (Echinodermata: Echinoidea) reared for five days at one of five food (Rhodomonas sp.) concentrations: 1000, 3250, 5500, 7750, 10,000 cells per mL. Each larva was reared in an individual vial, so each represents an independent data point. There were 20 sires and 40 dams; larvae are either full-sibs, paternal half-sibs, or unrelated. Data for a total of 332 larvae are included. These data were used to describe the reaction norm for food-conditioned phenotypic plasticity in ciliated band length in these larvae, and in a quantitative genetic analysis of variation among reaction norms (to determine heritability and the maternal effects).
Files and variables
File: Dendraster_heritability_and_maternal_effect_analysis_FINAL.R
This R script analyzes ciliated band length (CBL) plasticity and heritability in response to food concentration using correlations, mixed models, and a Bayesian animal model.
Description:
File: Plasticity_heritability_data_FINAL.csv
Description:
Variables
- Expt: four runs of the experiment were carried out.
- Spawn date: the date each run was started (by spawning males and females to create experimental families).
- Male: an identifier for each male used in a run.
- Female: an identifier for each female used in a run.
- food: concentration of Rhodomonas sp. each larva was exposed to (in cells per mL).
- Larva: identifier for each larva from a particular family/run.
- egg.vol: egg volume (um3); mean for each female.
- egg.vol.sd: standard deviation of egg volume.
- egg.diam: egg diameter (um) (backcalculated as diameter of a sphere of equivalent volume as the egg.vol measurement above). Mean for each female.
- mbl: mideline body length (um) of each larva.
- left.PO: length of left postoral arm of each larva (um)
- right.PO: length of right postoral arm of each larva (um)
- mean.PO: mean of left and right postoral arm lengths of each larva (um)
- cbl: ciliated band length of each larva (um)
- sire: study-wide paternal id
- dam: study-wide maternal id
- animal: study-wide larval id
Code/software
The file "Dendraster heritability and maternal effect analysis_FINAL.R" contains R code for all analyses in this study. It refers to the data file "Plasticity heritability data_FINAL.csv".
Access information
Other publicly accessible locations of the data:
- none
Data was derived from the following sources:
- none
