Data and code from: Spatial and temporal variation in climate and conflict explains 35 years of developmental plasticity in a polyphenism
Data files
May 27, 2026 version files 160.85 KB
-
Annual_Pond_Data_Tri.csv
11.45 KB
-
Master_Morph_Plasticity_Data_R.csv
106.83 KB
-
New_Plasticity_Morphs_R_Code_Workthrough.txt
17.66 KB
-
Pond_Temperature_Data.csv
9.31 KB
-
README.md
5.68 KB
-
Seasonal_Climate_and_Populations.csv
9.92 KB
Abstract
Environmental variation regulates the selective mechanisms acting on developmental plasticity and phenotypic expression. Animals with complex life cycles exhibit a great deal of developmental plasticity associated with fitness tradeoffs mediated by spatiotemporal variation. The objective of our study was to uncover the spatial (across seven natal ponds) and temporal (across 35 years) variation in developmental plasticity of 692 Arizona tiger salamanders (Ambystoma mavortium nebulosum) using lifetime mark-recapture data. Specifically, we evaluated spatiotemporal variation in the developmental plasticity of the following fitness-related traits: 1) size-at-age relationships for larval growth, 2) larval body size, 3) adult phenotypic expression (i.e. aquatic versus terrestrial morphs), and 4) adult age at first reproduction. The spatial variation in developmental plasticity of all four traits was closely correlated with environmental gradients of mortality risk associated with hydroperiod, microclimate, and conspecific conflict (competition and predation). Developmental plasticity also varied temporally, as both phenotypes reproduced at older ages during earlier cohorts with colder temperatures and heavier snowpacks (1988-1997) compared with mid (1998-2007) and late (2008-2014) cohorts of warmer temperatures and lighter snowpacks. Our results provide novel insight into how spatial and temporal processes jointly explain the maintenance of developmental plasticity and highlight the value of long-term studies of natural populations.
File: Annual_Pond_Data_Tri.csv Description: Habitat and density data
Adult Density Variables:
Year: Year of Study
Pond: Unique ID for each pond
Area: Pond area (m)
Depth: Pond depth (m)
Paedo breeders: Estimated density of paedomorphs in every pond each year
Larvae.density Estimated density of larvae in every pond each year
A.D.Ratio Area to Depth ratio of each pond
File: Seasonal_Climate_and_Populations.csv Description: Seasonal and annual climate variation
Population Variables:
Year: Year of Study
Period: Early, Mid, Late Cohorts
Group: Boom or Bust Cohort
Total.Breeders: Total estimated population size of breeding salamanders
Total.metas: Total estimated population size of metamorphs
Total.paedos: Total estimate population size of paedomorphs
Paedo.densities: Estimated densities of paedomorpsh (per m^2)
Larval.densities: Estimated densities of larval salamanders (per m^2)
Climate Variables:
FMin.Temp:Average minimum daily temperature of that season (°C)
FMin.Temp.SD: Standard deviation of the minimum daily temperature of that season
FMax.Temp: Average maximum daily temperature of that season (°C)
FMax.Temp.SD: Standard deviation of the maximum daily temperature of that season
FPrecip: Average daily precipitation of that season (mm)
FPrecip.SD: Standard deviation of the daily precipitation of that season
FSnowpack: Average daily snowpack of that season (kg/m2)
FSnowpack.SD: Standard deviation of the daily snowpack of that season
WMin.Temp: Average minimum daily temperature of that season (°C)
WMin.Temp.SD: Standard deviation of the minimum daily temperature of that season
WMax.Temp: Average maximum daily temperature of that season (°C)
WMax.Temp.SD: Standard deviation of the maximum daily temperature of that season
WPrecip: Average daily precipitation of that season (mm)
WPrecip.SD: Standard deviation of the daily precipitation of that season
WSnowpack: Average daily snowpack of that season (kg/m2)
WSnowpack.SD: Standard deviation of the daily snowpack of that season
SpMin.Temp: Average minimum daily temperature of that season (°C)
SpMin.Temp.SD: Standard deviation of the minimum daily temperature of that season
SpMax.Temp: Average maximum daily temperature of that season (°C)
SpMax.Temp.SD: Standard deviation of the maximum daily temperature of that season
SpPrecip: Average daily precipitation of that season (mm)
SpPrecip.SD: Standard deviation of the daily precipitation of that season
SpSnowpack: Average daily snowpack of that season (kg/m2)
SpSnowpack.SD: Standard deviation of the daily snowpack of that season
SuMin.Temp: Average minimum daily temperature of that season (°C)
SuMin.Temp.SD: Standard deviation of the minimum daily temperature of that season
SuMax.Temp: Average maximum daily temperature of that season (°C)
SuMax.Temp.SD: Standard deviation of the maximum daily temperature of that season
SuPrecip: Average daily precipitation of that season (mm)
SuPrecip.SD: Standard deviation of the daily precipitation of that season
SuSnowpack: Average daily snowpack of that season (kg/m2)
SuSnowpack.SD: Standard deviation of the daily snowpack of that season
GDD: Growing degree days
Fall.Wint.Sp.CumSnow: Cumulative snowpack estimate through the fall, winter, and spring seasons
Note: climate variables are provided for the Spring (SP), Summer (SU), Winter (W), and Fall (F) Seasons
Seasonal data is also provided for the SNOTEL snow monitoring network as well for estimating snow water equivalent (SWE)
File: Pond_Temperature_Data.csv Description: Pond microclimate data
See appendix of the manuscript for interpretations of the 12 microclimate and temperature variables summarized in this data file
Variables:
Mean Temp Average temperatures for the fall, winter, and spring season (°C)
Min Winter Temp:Minimum temperature maintained during winter season (°C)
First cold spell Day of year (DOY): with first consecutive week of freezing temperatures
Min cold spell Day of year (DOY): with first consecutive week of minimum temperatures
First Warming DOY: Day of year (DOY) after which the pond has started warming
Overwinter length: Difference between DOY coldspell and DOY first warming
6/21 Mean Temperature: Average temperature on the first day of summer (°C)
Proportion.Days.Before.Summer.Min: Days before the first day of summer spent frozen by the pond (i.e., before DOY of first warming)
File: Master_Morph_Plasticity_Data_R.csv Description: Adult Salamander Trait and Detection Data
ID: Unique identifier of individual salamanders based on toe clips or PIT tags
Cohort: Year of Birth
Cohort2: Categorial grouping of birth year
Group: Whether individual was born in a boom or bust cohort
Pond: Pond of capture
Morph: stage of development (Larvae, Meta, Paedo)
Sex: Male, Female, or Immature
Age.First.Reproduction: Age of first reproduction
Year: Year of Record
Max.Age: Maximum Age
Breeding.Years: Number of years that salamander was observed at the ponds in a breeding state
Average.Adult.Condition: Average lifetime BCI value of salamanders caught during adulthood
Life.Fitness Average: condition multiplied by the number of breeding events
Larval.SVL: SVL in mm
Larval.Age AGE of larvae at capture
Larval.Cond: BCI of larvae
Larval.Year: Year of Larval capture
