Co-assembly of 98TBs of metagenomes from human gut using exascale assembler MetaHipMer
Data files
Sep 03, 2024 version files 6.87 GB
-
hmb_exa_contigs.fna.gz
6.87 GB
-
hmb-all-plasmid.txt.gz
1 MB
-
hmb-all-virus.txt.gz
3.38 MB
-
README.md
820 B
-
SupplementaryTable1.xlsx
221.28 KB
Abstract
We report data and analyses from co-assembly of 74,559 human gut microbiome datasets totaling 98TB. The co-assembly resulted in 17M contigs, 1.1M of which were of viral origin, and 803 of them were complete viral genomes.
https://doi.org/10.5061/dryad.547d7wmhd
The data deposit contains list of SRA accession ids, assembled contigs, and sequence ids of plasmids and viruses.
Description of the data and file structure
List of files with short description of their content:
- SupplementaryTable1.xls: A list of SRA record ids that were co-assembled.
- hmb_exa_contigs.fna.gz: Fasta file with all the assembled contigs.
- hmb-all-virus.txt.gx: Sequence headers of all viral sequences from genomad and CheckV pipeline.
- hmb-all-plasmid.txt.gz: Sequence headers of all plasmid sequences.
Sharing/Access information
Data was derived from the following sources:
- Sequence Read Archive (SRA)