Accelerated flowering and differential florigen gene expression of seagrass Zostera marina under experimental warming
Data files
Jan 27, 2026 version files 463.99 KB
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A3_FieldTemps.csv
104.93 KB
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A3_Molecular_Morphology2024.csv
17.07 KB
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A3_TempLoggersCompiled.csv
160.14 KB
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A3_Transplant_Counts_Compiled.csv
6.98 KB
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A3_Transplant_Morph_Compiled.csv
40.07 KB
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AnnualTransplantExpt2024.R
39.68 KB
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README.md
6.52 KB
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SPMC-AnnualTransplantExp2025-GeneExpData.xlsx
74.27 KB
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spmc-geneexp-GAM_02.R
14.32 KB
Abstract
Flowering is an important trait for the resilience of marine angiosperms (seagrasses) as they face rising seawater temperatures, more frequent extreme weather events, and anthropogenic disturbances. Using the seagrass Zostera marina, we applied a common garden approach to experimentally test how flowering and its underlying molecular mechanisms responded to elevated water temperature (+3°C). We focused on developmental and reproductive traits paired with florigen gene expression to gain insight to the molecular mechanism underpinning differences in flowering responses. We compared annual seedlings from two source populations (Willapa Bay along the coast, and Padilla Bay in the Salish Sea, Washington, USA) to understand natural variation not only in morphological and reproductive traits, but also the gene-environment interactions governing flowering onset. At the individual and population levels, annual seedlings in the +3°C heated treatment produced more spathes and accelerated development of inflorescences so seeds dispersed sooner. Seedlings from Padilla Bay flowered at greater rates and earlier than Willapa Bay, and these differences were exaggerated by the +3°C heated treatment. A predicted repressor of flowering onset, ZmaFT9, was expressed at lower levels in the shoots grown in the +3°C heated treatment, and even more so in the Padilla Bay population, which flowered earlier than the Willapa Bay population. For two predicted floral activators, ZmaFT2 and ZmaFT4, expression increased throughout the summer regardless of population and showed no response to the temperature treatment. ZmaTFL1a, a gene predicted to be involved with downstream flowering processes, showed no significant response to the temperature treatment. Together, these results support a key role for antiflorigen (ZmaFT9) in the molecular control of flowering in Z. marina, and ZmaFT9 expression contributes to the temperature-based response of timing of flowering onset. Impacts of elevated seawater temperature on flowering timing and spathe production, with different responses by population, have potential consequences for seed yield and variation in meadow resilience.
Dataset DOI: 10.5061/dryad.612jm64hd
Description of the data and file structure
This dataset contains the data and code required for analyses in Nolan et al. (in review). This dataset includes morphological data, flowering phenotype data, and quantitative RT-PCR data for gene expression analyses of eelgrass samples. All samples were collected from mesocosm tanks at Shannon Point Marine Center (SPMC) in Anacortes WA. Shoots and seedlings used were originally collected from Padilla Bay, WA and Willapa Bay, WA USA.
Files and variables
File: SPMC-AnnualTransplantExp2025-GeneExpData.xlsx
Description: qPCR data from annual eelgrass shoots collected from Willapa Bay Washington. Data summary on “Readme” sheet within file.
Variables
- Date: collection date of samples, month/day/year
- Pop: Population (JL = Joe Leary/Padilla Bay, WB = Willapa Bay)
- Sample_ID: Sample unique ID (includes date, tank, population, and heat treatment)
- Pop_Temp: Population and temperature treatment
- Temp: Temperature treatment (Ambient or Heated)
- deltaCt: value calculated from Cq value
- DevState: developmental/reproductive state (F = flowering, V = vegetative, B = bolted)
- Tank: Tank in the experiment (Ambient = 1,4,6,7; Heated = 2,3,5,8)
File: A3_FieldTemps.csv
Description: Temperature data from environmental sensors deployed at intertidal field sites where source populations were collected
Variables
- Date_Time: Date and timestamp for the record in month/day/year 24 h time
- Temp_C: Temperature (Celsius). Note: Temperatures are water and air temperatures depending on tidal stage at these intertidal sites.
- Site: Embayment where data were collected, Willapa Bay or Padilla Bay
File: A3_Molecular_Morphology2024.csv
Description: Morphological data from destructive samples used for molecular analyses from manipulative experiment
Variables
- date_col: Date sample was collected from mesocosm experiment
- tank: Tank number from which plant was collected
- trt: Treatment, heated (H) or ambient (A)
- site: Source location for population, either Willapa Bay (WB) or Padilla Bay (JL)
- smpl: individual shoot number
- stage: Developmental stage of seedling collected, either non-flowering (N), flowering (F), or bolted (B)
- branches: Number of branches connected to the plant individual collected
- slength: Length of plant to tip of longest leaf, in cm
- swidth: Width of plant at sheath, in mm
- spathes: Number of spathes on the shoot (flowering shoots only)
- leaf_quanity: Number of leaves on the shoot (non-flowering shoots only)
- cat0: On flowering shoots only: Number of spathes with undeveloped flowers
- cat1: On flowering shoots only: Number of spathes with stigma erect
- cat2: On flowering shoots only: Number of spathes with styles bent back
- cat3: On flowering shoots only: Number of spathes with anthers dehiscing
- cat4: On flowering shoots only: Number of spathes with ripening fruits
- cat5: On flowering shoots only: Number of spathes with seeds dispersed
- rhlength: Rhizome length, in mm
- rtlength: Longest length of bundle of roots on rhizome, in cm
- internodes: Number of rhizome internodes
File: A3_Transplant_Counts_Compiled.csv
Description: Census data for counts of flowering and non-flowering in each mesocosm tank and tub
Variables
- date: Date of census as month/day/year
- label: Tub label, consisting of site code and tank replicate number
- site: Source location for population, either Willapa Bay (WB) or Padilla Bay (JL)
- tank: Tank replicate number
- trt: Treatment, heated (heat) or ambient (amb)
- flwr: Number of flowering shoots counted in the tub
- non_flwr: Number of non-flowering shoots counted in the tub
- total_shoots: Total number of shoots counted in the tub (flowering + non-flowering
- Other abbreviations: NA represents missing data
File: A3_TempLoggersCompiled.csv
Description: Temperature data from Onset Hobo Tidbit loggers placed in each experimental mesocosm tank throughout the duration of the manipulative experiment, in wide format
Variables
- DateTime: Date and timestamp for the record in month/day/year 24 h time
- T1: Tank 1 temperature data (Celsius)
- T2: Tank 2 temperature data (Celsius)
- T3: Tank 3 temperature data (Celsius)
- T4: Tank 4 temperature data (Celsius)
- T5: Tank 5 temperature data (Celsius)
- T6: Tank 6 temperature data (Celsius)
- T7: Tank 7 temperature data (Celsius)
- T8: Tank 8 temperature data (Celsius)
- AIR: Air temperature data (Celsius)
File: A3_Transplant_Morph_Compiled.csv
Description: Non-destructive morphological data from manipulative experiment conducted in mesocosms
Variables
- date: Date of census
- tub: Tub label, consisting of site code and tank replicate number
- site: Source location for population, either Willapa Bay (WB) or Padilla Bay (JL)
- tank: Tank replicate number
- trt: Treatment, heated (heat) or ambient (amb)
- smpl: individual shoot number
- stage: Developmental stage of seedling, either non-flowering (veg) or flowering (flwr)
- length: Shoot length to tip of longest leaf, in cm
- width: Width of shoot at the sheath, in mm
- leaves: Number of leaves on the shoot (non-flowering shoots only)
- spathes: Number of spathes on the shoot (flowering shoots only)
- cat0: On flowering shoots only: Number of spathes with undeveloped flowers
- cat1: On flowering shoots only: Number of spathes with stigma erect
- cat2: On flowering shoots only: Number of spathes with styles bent back
- cat3: On flowering shoots only: Number of spathes with anthers dehiscing
- cat4: On flowering shoots only: Number of spathes with ripening fruits
- cat5: On flowering shoots only: Number of spathes with seeds dispersed
- cat6: On flowering shoots only: Number of spathes post-dispersal
Code/software
File: spmc-geneexp-GAM_02.R
Description: R code used to generate GAMM for gene expression data. Statistical models were built in R version 4.4.2 (R Core Team, 2024) using gam function from the package mgcv.
File: AnnualTransplantExpt2024.R
Description: R script containing visualization and analyses conducted for population and morphological level data from manipulative experiment, using R version 4.4.2 (2024-10-31)
