Temperature alters specificity in a host-parasite interaction
Data files
Jul 06, 2026 version files 111.85 KB
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Meloidogyne_Pasteuria_GxGxE_Dryad.csv
55.12 KB
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README.md
2.97 KB
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Temperature_alters_specificity_For_Submission.R
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Abstract
The Red Queen Hypothesis proposes that genetic variation is maintained in populations through antagonistic coevolution of hosts and parasites. A major assumption of the Red Queen Hypothesis is tight genetic specificity for infection. However, it has been argued that this genetic interaction of host and parasite (GHxGP) is sensitive to environmental context (GHxGPxE). Environmental change could accordingly disrupt coevolutionary oscillations on relevant time scales, calling into question antagonistic coevolution as a general and robust explanation for the maintenance of genetic diversity. To evaluate this critique, we used the plant-parasitic nematode Meloidogyne arenaria and its natural bacterial parasite Pasteuria penetrans to determine if specificity is altered by temperature. We exposed six isofemale host lines to five parasite sources at three ecologically relevant temperatures. We found that, at two of three temperatures, susceptibility to infection depended on the specific combination of host line and parasite source (GHxGP). This specificity varied across temperatures, consistent with a GHxGPxE effect. This three-way interaction was driven both by quantitative changes in the strength of specificity across temperatures and in the susceptibility rankings of host-parasite combinations. Our study contributes a rare experimental test of a proposed challenge to the Red Queen Hypothesis and suggests the potential for environmental context to change host-parasite specificity.
Dataset DOI: 10.5061/dryad.6q573n6df
Description of the data and file structure
In this study, we used Meloidogyne arenaria and Pasteuria penetrans to test whether three temperatures (25, 30, and 35 °C) altered specificity. We used six distinct iso-female host lines and five parasite sources for a total of 30 unique combinations. Hosts were exposed to parasites for 48 hours and then we performed an attachment assay, where the first 50 hosts were examined in each sample, and attached spores were counted on each host.
From these data, we then calculated both attachment rate (the number of hosts with spores attached/total hosts) and attachment load (the mean number of spores per host, zeros excluded).
Data Dictionary
- Host_ID: Original identifier for the host genotype/isofemale line of Meloidogyne arenaria used in the attachment assay.
- Refactored Host ID: Recoded or simplified host identifier used for analysis/plotting.
- Parasite_ID: Identifier for the Pasteuria penetrans parasite source/population used in the assay.
- Rep: Replicate number for a given host-parasite-temperature combination.
- Sample_ID: Unique sample identifier for the experimental unit/sample.
- Block: Experimental block, representing the assay batch in which samples were processed.
- Temperature: Temperature treatment used during the assay. Units: degrees Celsius.
- Treatment: Temperature treatment category defined as low/medium/high.
- FlaskID: Unique identifier for each assay flask/replicate.
- ComboID: Unique identifier for each host-parasite combination, regardless of temperature.
- ComboTempID: Unique identifier for each host-parasite-temperature combination.
- A-AX: Individual nematode counted in the particular replicate. NA's in the dataset represent no nematode available.
Code/software
Data files (Meloidogyne_Pasteuria_GxGxE_Dryad.csv) are provided as .csv files and can be viewed using any spreadsheet software or text editor. Analyses (Temperature_alters_specificity_For_Submission.R) were conducted in R version 4.4.0 (2024-04-24), “Puppy Cup.” The included R script reads the raw .csv data, formats data, calculates attachment rate and attachment load, fits generalized linear mixed models, performs model comparisons and diagnostics, and generates summary figures.
The following R packages were used: lme4 v1.1-35.3, DHARMa v0.4.6, glmmTMB v1.1.11, car v3.1-2, bbmle v1.0.25.1, emmeans v1.10.2, tidyverse v2.0.0, performance v0.13.0, viridis v0.6.5, and see v0.10.0.
Access information
Other publicly accessible locations of the data:
Data was derived from the following sources:
- Original experimental data
