Data from: New osteological characteristics identify the first stem sleeper goby (Gobioidei, Odontobutidae) from the Upper Eocene
Data files
Aug 22, 2025 version files 72.51 MB
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Atlas-Figure_1.tif
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Atlas-Figure_2.tif
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Atlas-Figure_3.tif
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Atlas-Figure_5.tif
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Atlas-Figure_6.tif
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Atlas-Figure_7.tif
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Atlas-Figure_8.tif
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README.md
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Abstract
Amongst Gobioidei, one of the most diverse orders of teleost fishes, the families Odontobutidae (sleeper gobies) and Rhyacichthyidae are considered ‘basal gobioids’ and are therefore particularly interesting for understanding gobioid evolutionary history. However, their fossil record currently consists of only three extinct odontobutid species (two skeleton-based, one otolith-based). The aim of the study associated with this dataset (Bauer et al. 2025 in Papers in Palaeontology) was to investigate the possible relationship of one of the oldest known gobioid fossils, †Paralates chapelcornerensis from the Upper Eocene of southern England, to these families. To achieve this, osteological differences between Odontobutidae and Rhyacichthyidae were newly investigated using 19 extant species from museum collections. This taxon set included both genera of the Rhyacichthyidae, five genera of the Odontobutidae (including Terateleotris; representing 78% of all odontobutid genera), one genus of the Eleotridae (Eleotris Bloch & Schneider 1801), two of the Butidae (Oxyeleotris Bleeker 1874; Bostrychus Lacepède 1801), one of the Gobiidae (Gobius Linnaeus 1758), as well as Trichonotus Bloch & Schneider, 1801 (Trichonotidae) and Apogon Lacepède 1801 (Apogonidae). Both Trichonotus and Apogon were selected as outgroups because the Trichonotidae is the sister group of the Gobioidei, and Apogonidae is closely related to Trichonotidae + Gobioidei (Thacker et al. 2015). To ensure that characters were consistent between species and capable of distinguishing between genera, three species each of Odontobutis and Trichonotus were included. The analysis identified 17 osteological characters (15 newly described) that are different between Odontobutidae and Rhyacichthyidae. These characters were used for comparative morphology and phylogenetic analyses (maximum parsimony, Bayesian inference) to determine whether †Paralates can be assigned to either the Odontobutidae or Rhyacichthyidae.
This Dryad dataset provides an osteological atlas (Supplementary Data S1 in Bauer et al. 2025 in Papers in Palaeontology) illustrating the studied skeletal structures for †Paralates, Rhyacichthyidae and Odontobutidae, Eleotris (Eleotridae), Oxyeleotris and Bostrychus (both Butidae), Gobius (Gobiidae) and the used outgroups Trichonotus and Apogon.
https://doi.org/10.5061/dryad.7pvmcvf36
Description of the data and file structure
The fossil material and the µCt scans of the extant comparative material were used for osteological study. The focus was study of six bony structures that were well-preserved in the fossil material of †Paralates: the first vertebra (atlas), the upper jaw bone (premaxilla), the palatine, the urohyal, the hyoid arch, and the pelvic girdle. These bones were segmented from the µCTs of the extant species and visualized in 3D.
The outcome served to identify structures and character states that differed between Odontobutidae and Rhyacichthyidae. To ensure that characters were consistent between species and capable of distinguishing between genera, three species of Odontobutis and three species of Trichonotus were included. The results are compiled in an osteological atlas comprising eight plates (=Supplementary Data S1 in Bauer et al. 2025 in Papers in Palaeontology). The original TIFF files of this osteological atlas are presented here in the Dryad dataset.
Atlas-Figures 1–6 illustrate a single morphological feature of the following specimens. Panel labels refer to species as follows:
A, †Paralates sp. (A1-3 NHMUK PV P 77141)
B, Apogon imberbis (ZSM 43837)
C, Trichonotus cf. setiger (ZSM 43097)
D, Protogobius attiti (MNHN-2019-0112)
E, Rhyacichthys guilberti (MNHN-2019-0113-2)
F, Odontobutis platycephala (NHMUK 1983.11.4.28-29)
G, Perccottus glenii (ZSM 39696)
H, Microdous chalmersi (NHMUK 1937.9.17.41-42)
I, Micropercops cinctus (ZSM 39647)
J, Terateleotris aspro (ZSM 43742)
K, Eleotris pisonis (ZSM 41704)
L, Oxyeleotris marmorata (ZSM 46847)
M, Gobius incognitus (NMP 6V 146150).
The illustrated elements are:
Atlas-Figure_1. First vertebra (atlas)
Atlas-Figure_2. Premaxilla
Atlas-Figure_3. Pelvic girdle and pelvic–pectoral articulation
Atlas-Figure_4. Palatine
Atlas-Figure_5. Urohyal
Atlas-Figure_6. Hyoid arch.
Atlas-Figures 7 and 8 illustrate that in three species each of Odontobutis and Trichonotus, the six studied bones were consistent between species and thus suitable for distinguishing genera.
Atlas-Figure_7. Comparison of the first vertebra (atlas), premaxilla, pelvic girdle and pelvic–pectoral articulation, palatine, urohyal and hyoid arch among three species of Odontobutis.
Atlas-Figure_8. Comparison of the first vertebra (atlas), premaxilla, pelvic girdle and pelvic–pectoral articulation, palatine, urohyal and hyoid arch among three species of Trichonotus.
Captions of Atlas figures
ATLAS-FIG. 1. First vertebra (atlas) of †Paralates sp. (NHMUK PV P 77141, arrows indicate anterior) and μCT scans of the first vertebra and character states of Apogon imberbis, Trichonotus cf. setiger, species of the Rhyacichthyidae and Odontobutidae, Eleotris pisonis (Eleotridae), Oxyeleotris marmorata (Butidae) and Gobius incognitus (Gobiidae). First vertebrae shown in: 1, anterior; 2, lateral (anterior to the left); 3, dorsal view. All scale bars 1 mm.
ATLAS-FIG. 2. Premaxilla of †Paralates chapelcornerensis/sp. (A1–3= NHMUK PV P 77105, A4,5= NHMUK PV P 77026, arrows indicate anterior) and μCT scans and character states of the premaxilla of Apogon imberbis, Trichonotus cf. setiger, species of the Rhyacichthyidae and Odontobutidae, Eleotris pisonis (Eleotridae), Oxyeleotris marmorata (Butidae) and Gobius incognitus (Gobiidae). Premaxillae shown in: 1, medial; 2, dorsal; 3, lateral view. All scale bars 1 mm.
ATLAS-FIG. 3. Pelvic girdle and pelvic–pectoral articulation of †Paralates chapelcornerensis (NHMUK PV P 77028a) shown in: A1, dorso-ventral, A2, lateral, A3, dorsal view (arrows indicate anterior), and μCT scans and character states of the pelvic girdle and pelvic-pectoral articulation of Apogon imberbis, Trichonotus cf. setiger, species of the Rhyacichthyidae and Odontobutidae, Eleotris pisonis (Eleotridae), Oxyeleotris marmorata (Butidae) and Gobius incognitus (Gobiidae). Pelvic girdle for the extant species shown in: 1, dorsal (anterior to the left), 2, lateral (anterior to the left), 3, ventral view (anterior to the right); pelvic–pectoral articulation shown in: 4, lateral view (anterior to the left). Inset upper right corner shows generalized bauplan of pelvic bone for Rhyacichthyidae and Odontobutidae. All scale bars 1 mm.
ATLAS-FIG. 4. Palatine of †Paralates sp. (NHMUK PV P 77036b, arrow indicates anterior) and μCT scans and character states of the palatine of Apogon imberbis, Trichonotus cf. setiger, species of the Rhyacichthyidae and Odontobutidae, Eleotris pisonis (Eleotridae), Oxyeleotris marmorata (Butidae) and Gobius incognitus (Gobiidae). Palatines shown in: 1, lateral (anterior is upper right); 2, dorsal; 3, medial view (anterior is upper left). All scale bars 1 mm.
ATLAS-FIG. 5. Urohyal of †Paralates chapelcornerensis (A1= NHMUK PV P 76993a, arrow indicates anterior), and μCT scans and character states of the urohyal of Apogon imberbis, Trichonotus cf. setiger, species of the Rhyacichthyidae and Odontobutidae, Eleotris pisonis (Eleotridae), Oxyeleotris marmorata (Butidae), and Gobius incognitus (Gobiidae). Urohyals shown in: 1, lateral; 2, ventral view; anterior to the left.
ATLAS-FIG. 6. Hyoid arch of †P. chapelcornerensis (NHMUK PV P 76990, arrow indicate anterior) and μCT scans and character states of the hyoid arch of Apogon imberbis, Trichonotus cf. setiger, species of the Rhyacichthyidae and Odontobutidae, Eleotris pisonis (Eleotridae), Oxyeleotris marmorata (Butidae), and Gobius incognitus (Gobiidae). Hyoid arches of extant species in: 1, lateral (anterior to the right); 2, dorsal (anterior to the left); 3, medial view (anterior to the left). All scale bars 1 mm.
ATLAS-FIG. 7. Comparison of osteological structures and character states among three species of Odontobutis: O. obscurus (NHMUK 1983.11.4.14-17), O. platycephala (NHMUK 1983.11.4.28-29) and O. hikimius (NHMUK 1999.4.20.1-2). A, urohyal in: A1, lateral; A2, ventral view. B, premaxilla in: B1, lateral; B2, dorsal; B3, medial view. C, palatine in: C1, lateral; C2, dorsal; C3, medial view. D, hyoid arch in: D1, lateral; D2, dorsal; D3, medial view. E, atlas in: E1, anterior; E2, lateral; E3, dorsal view. F, pelvic girdle in: F1, dorsal; F2, anterolateral; F3, ventral view. Arrows indicate anterior direction. All scale bars 1 mm.
ATLAS-FIG. 8. Comparison of osteological structures among three species of Trichonotus: T. nikii (SMF 10255_1), T. cf. setiger (ZSM 43097) and T. arabicus (SMF 26994). A, urohyal in: A1, lateral; A2, ventral view. B, premaxilla in: B1, lateral; B2, dorsal; B3, medial view. C, palatine in: C1, lateral; C2, dorsal; C3, medial view. D, hyoid arch in: D1, medial; D2, dorsal; D3, lateral view. E, atlas in: E1, anterior; E2, lateral; E3, dorsal view. F, pelvic girdle in: F1, dorsal; F2, anterolateral; F3, ventral view. Arrows indicate anterior direction. All scale bars 1 mm.
TABLE 1. List of the studied species of the comparative material. 3D models of the investigated bones of the extant species are available from the MorphoSource project 000642675 of Bauer et al. (2025). See: https://www.morphosource.org/projects/000642675?locale=en
Species, collection number | Family | Collection number, MorphoSource DOI | Molecular data |
---|---|---|---|
Sphaeramia nematoptera (Bleeker 1856) | Apogonidae | ZSM GO-0621, -0634; DOI: 10.17602/M2/M701284 | Gierl et al. 2022 |
Apogon imberbis (Linnaeus, 1758) | Apogonidae | ZSM 43837; DOI: 10.17602/M2/M704361 | Supplementary Data S2 |
Trichonotus arabicus Randall & Tarr, 1994 | Trichonotidae | SMF 26994; DOI: 10.17602/M2/M680497 | - |
Trichonotus cf. setiger Bloch & Schneider, 1801 | Trichonotidae | ZSM 43097; DOI: 10.17602/M2/M701109 | Supplementary Data S2 |
Trichonotus nikii Clark & von Schmidt, 1966 | Trichonotidae | SMF 10255(1); DOI: 10.17602/M2/M681004 | - |
Protogobius attiti Watson & Pöllabauer, 1998 | Rhyacichthyidae | MNHN-2019-0112; DOI: 10.17602/M2/M123811 | Gierl et al. 2022 |
Rhyacichthys guilberti Dingerkus & Séret, 1992 | Rhyacichthyidae | MNHN-2019-0113-2; DOI: 10.17602/M2/M123809 | Gierl et al. 2022 |
Rhyacichthys aspro (Valenciennes, 1837) | Rhyacichthyidae | ZSM 44262; DOI: 10.17602/M2/M701274 | Gierl et al. 2022 |
Microdous chalmersi Nichols & Pope, 1927 | Odontobutidae | BMNH 1937.9.17.41-42; DOI: 10.17602/M2/M689432 | Supplementary Data S2 |
Micropercops cinctus (Dabry de Thiersant, 1872) | Odontobutidae | ZSM 39647; DOI: 10.17602/M2/M642729 | Supplementary Data S2 |
Odontobutis hikimius Iwata & Sakai, 2002 | Odontobutidae | BMNH 1999.4.20.1-2; DOI: 10.17602/M2/M683184 | Supplementary Data S2 |
Odontobutis obscurus Temminck & Schlegel, 1845 | Odontobutidae | BMNH 1983.11.4.14-17; DOI: 10.17602/M2/M689065 | Gierl et al. 2022 |
Odontobutis platycephala Iwata & Jeon, 1985 | Odontobutidae | BMNH 1983.11.4.28-29; DOI: 10.17602/M2/M683240 | Supplementary Data S2 |
Perccottus glenii Dybowski, 1877 | Odontobutidae | ZSM 39696; DOI: 10.17602/M2/M682159 | Gierl et al. 2022 |
Terateleotris aspro (Kottelat, 1998) | Odontobutidae | ZSM 43742; DOI: 10.17602/M2/M681010 | - |
Eleotris pisonis (Gmelin, 1789) | Eleotridae | ZSM 41704; DOI: 10.17602/M2/M123753 | Gierl et al. 2022 |
Bostrychus africanus (Steindachner, 1879) | Butidae | ZSM 25113; DOI: 10.17602/M2/M701279 | Supplementary Data S2 |
Oxyeleotris marmorata (Bleeker, 1852) | Butidae | ZSM 46847; DOI: 10.17602/M2/M680927 | Gierl et al. 2022 |
Gobius incognitus Kovačić & Šanda, 2016 | Gobiidae | NMP 6V 146150; DOI: 10.17602/M2/M123810 | Supplementary Data S2 |
†Paralates bleicheri Sauvage, 1883 | - | see Gierl & Reichenbacher (2017) | - |
Files and variables
File: Archive.zip
Description: TIFF files of the Atlas-Figures 1–8
Code/software
Adobe Reader or any Preview application can be used to open the files
Access information
Other publicly accessible locations of the data:
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Data was derived from the following sources:
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Study of fossil material
The fossil material included 51 articulated fossils, > 100 isolated bones and four isolated otoliths of †Paralates from the Upper Eocene of the Chapelcorner Fish Bed (Chale, Isle of Wight, UK). The fossil material was studied and photographed under a Leica M165 C microscope equipped with a Jenoptik Gryphax Naos microscope camera. Photos were edited in Photoshop CS6 and Krita. The corresponding figures were prepared with Photoshop CS6 and Inkscape.
Study of recent comparative material
A total of 19 extant species were newly investigated. They encompass:
Apogonidae
Sphaeramia nematoptera (Bleeker 1856)
Apogon imberbis (Linnaeus 1758)
Trichonotidae
Trichonotus arabicus Randall & Tarr 1994
Trichonotus cf. setiger Bloch & Schneider 1801
Trichonotus nikii Clark & von Schmidt 1966
Rhyacichthyidae
Protogobius attiti Watson & Pöllabauer 1998
Rhyacichthys guilberti Dingerkus & Séret 1992
Rhyacichthys aspro (Valenciennes, 1837)
Odontobutidae
Microdous chalmersi Nichols & Pope 1927
Micropercops cinctus (Dabry de Thiersant 1872)
Odontobutis hikimius Iwata & Sakai 2002
Odontobutis obscurus Temminck & Schlegel 1845
Odontobutis platycephala Iwata & Jeon 1985
Perccottus glenii Dybowski 1877
Terateleotris aspro (Kottelat 1998)
Eleotridae
Eleotris pisonis (Gmelin 1789)
Butidae
Bostrychus africanus (Steindachner 1879)
Oxyeleotris marmorata (Bleeker 1852)
Gobiidae
Gobius incognitus Kovačić & Šanda 2016
For museum collection numbers of the species see Table 1 in Bauer et al. (2025) in Papers in Palaeontology.
New micro-CT (µCT) scans were obtained for species that were not available on Morphosource from previous works. Only for Sphaeramia nematoptera, Rhyacichthys aspro and Bostrychus africanus no µCt scan could be acquired and these species were examined based on X-ray imaging. The software Amira 3D 2021.2 (Stalling et al. 2005) was used for analysis and segmentation of individual bones as well as generation of 3D models. Images of the models were made with the in-program snapshot function.
A new MorphoSource project was created that contains µCT scans or X-ray images for all studied species as well as models of the studied bones. The reference is:
Bauer, E., Cerwenka, A. E., Schliewen, U. K. and Reichenbacher, B. 2025. Project: New osteological characteristics identify the first stem sleeper goby (Gobioidei, Odontobutidae) from the Upper Eocene [dataset]. MorphoSource. https://www.morphosource.org/projects/000642675
For MorphoSource DOI numbers of the µCT scans of the species see also Table 1 in Bauer et al. (2025) in Papers in Palaeontology.
Osteological study
The fossil material and µCt scans of the extant comparative specimens were used for osteological study. Six bony structures that were well-preserved in the fossil material of †Paralates were the focus: the first vertebra (atlas), the premaxilla, the palatine, the urohyal, the hyoid arch, and the pelvic girdle. These elements were segmented from the µCTs of the extant species and visualized in 3D.
The outcome served to identify structures and character states that differed between Odontobutidae and Rhyacichthyidae. The results are compiled in an osteological atlas comprising eight plates (Supplementary Data S1 in Bauer et al. 2025 in Papers in Palaeontology). The original TIFF files of this atlas are provided in the Dryad dataset.