Data from: Neurodegenerative and neurodevelopmental roles for bulk lipid transporters VPS13A and BLTP2
Data files
Apr 23, 2025 version files 20.38 KB
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Neuman_et_al_Movement_Disorders.zip
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README.md
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Abstract
Background: Bridge‐like lipid transfer proteins (BLTPs) mediate bulk lipid transport at membrane contact sites. Mutations in BLTPs are linked to both early‐onset neurodevelopmental and later‐onset neurodegenerative diseases, including movement disorders. The tissue specificity and temporal requirements of BLTPs in disease pathogenesis remain poorly understood.
Objective: The objective of this study was to determine tissue‐specific and aging‐dependent roles for VPS13A and BLTP2 using Drosophila models.
Methods: We generated tissue‐specific knockdowns of the VPS13A ortholog (Vps13) and the BLTP2 ortholog (hobbit) in neurons and muscles of Drosophila. We analyzed age‐dependent locomotor behavior, neurodegeneration, and synapse development and function.
Results: Neuron‐specific loss of the VPS13A ortholog caused neurodegeneration followed by aging‐dependent movement deficits and reduced lifespan, whereas muscle‐specific loss affected only lifespan. In contrast, neuronal loss of the BLTP2 ortholog resulted in severe early‐onset locomotor defects without neurodegeneration, whereas muscle loss impaired synaptogenesis and neurotransmission at the neuromuscular junction.
Conclusions: VPS13A maintains neuronal survival, whereas BLTP2 orchestrates synaptic development. The phenotypic specificity of BLTP function provides mechanistic insights into distinct disease trajectories for BLTP‐associated disorders.
Dataset DOI: 10.5061/dryad.7pvmcvf59
Description of the data and file structure
This file contains the raw data used to generate the figures published by the Bashirullah Lab, published in: Neuman SD, Thakur RS, Gratz SJ, O'Connor-Giles KM, Bashirullah A. Neurodegenerative and Neurodevelopmental Roles for Bulk Lipid Transporters VPS13A and BLTP2. Mov Disord. 2025 Mar 28. doi: 10.1002/mds.30178. PMID: 40152532. This manuscript used Drosophila as a model system to examine tissue-specific functions for the bridge-like lipid transfer proteins (BLTPs) VPS13A and BLTP2 (Vps13 and hobbit in Drosophila, respectively). This dataset includes lethal phase data, climbing data, lifespan data, neurodegeneration index data, and body size/pupa volume data.
Each file name contains a reference to the figure where the data is published, as well as a description of the type of data included in the file.
Files and variables
Figure1BLethalPhaseData.csv
This file contains the lethal phase data for control and Vps13-RNAi (Vps13(i)) knockdown in specific tissues: ubiquitous (act-GAL4), neuron-specific (elav-GAL4), and muscle-specific (24 B-GAL4). Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., act>Luc is short for act-GAL4 UAS-Luc).
Number of variables: 5
Number of header rows: 1
Number of rows: 6
Variable list:
- Genotype (alphanumeric): the genotype analyzed
- Number arrested as prepupa (PP) (numeric): animals that arrested development as prepupa
- Number arrested as pupa/incomplete pupa (P/iP) (numeric): animals that arrested development as pupa/incomplete pupa
- Number arrested as pharate adults (PA) (numeric): animals that arrested development as pharate adults
- Numberenclosedd as adult (A) (numeric): animals that survived to adulthood
Data type: alphanumeric, numeric
Figure1DClimbingData.csv
This file contains the climbing data for 3-4-da4-day-oldld control (elav>Luc) and neuron-specific Vps13 knockdown (elav>Vps13(i)) flies. Data was initially collected for males and females separately; however, because no sex-specific differences were observed, the data reported in the associated published figure bins both sexes together. Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., elav>Luc is short for elav-GAL4 UAS-Luc).
Number of variables: 5
Number of header rows: 1
Number of rows: 12
Variable list:
- Genotype and replicate number (alphanumeric): the sex, genotype, and replicate number analyzed
- Total n (numeric): Total number of flies analyzed for the listed genotype
- Trial 1 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
- Trial 2 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
- Trial 3 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
Data type: alphanumeric, numeric
Figure1EClimbingData.csv
This file contains the climbing data for 3-4-day 4-day-old control (24B>Luc) and muscle-specific Vps13 knockdown (24B>Vps13(i)) flies. Data was initially collected for males and females separately; however, because no sex-specific differences were observed, the data reported in the associated published figure bins both sexes together. Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., 24B>Luc is short for 24 B-GAL4* UAS-Luc*).
Number of variables: 5
Number of header rows: 1
Number of rows: 12
Variable list:
- Genotype and replicate number (alphanumeric): the sex, genotype, and replicate number analyzed
- Total n (numeric): Total number of flies analyzed for the listed genotype
- Trial 1 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
- Trial 2 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
- Trial 3 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
Data type: alphanumeric, numeric
Figure1FClimbingData.csv
This file contains the climbing data for control (elav>Luc) and neuron-specific Vps13 knockdown (elav>Vps13(i)) in aging flies. Data was initially collected for males and females separately; however, because no sex-specific differences were observed, the data reported in the associated published figure bins both sexes together. Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., elav>Luc is short for elav-GAL4 UAS-Luc).
Number of variables: 6
Number of header rows: 1
Number of rows: 72
Variable list:
- Genotype and replicate number (alphanumeric): the sex, genotype, and replicate number analyzed
- Age (alphanumeric): the age of the flies analyzed
- Total n (numeric): Total number of flies analyzed for the listed genotype
- Trial 1 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
- Trial 2 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
- Trial 3 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
Data type: alphanumeric, numeric
Figure1GClimbingData.csv
This file contains the climbing data for control (24B>Luc) and muscle-specific Vps13 knockdown (24B>Vps13(i)) flies during aging. Data was initially collected for males and females separately; however, because no sex-specific differences were observed, the data reported in the associated published figure bins both sexes together. Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., 24B>Luc is short for24 B-GAL44 UAS-Luc).
Number of variables: 6
Number of header rows: 1
Number of rows: 84
Variable list:
- Genotype and replicate number (alphanumeric): the sex, genotype, and replicate number analyzed
- Age (alphanumeric): the age of the flies analyzed
- Total n (numeric): Total number of flies analyzed for the listed genotype
- Trial 1 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
- Trial 2 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
- Trial 3 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
Data type: alphanumeric, numeric
Figure2DNeurodegenerationIndexData.csv
This file contains the raw data for neurodegeneration index scoring in control (elav>Luc or 24B>Luc) and Vps13-RNAi (elav>Vps13(i) or 24B>Vps13(i)) brains during aging. Neurodegeneration indices are scored numerically from 0 to 4, depending on the abundance and size of vacuoles present in brain sections. Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., elav>Luc is short for elav-GAL4 UAS-Luc).
Number of variables: 4
Number of header rows: 1
Number of rows: 12
Variable list:
- Genotype (alphanumeric): the genotype being analyzed
- Age (alphanumeric): the age of the flies analyzed
- Total n brains (numeric): number of brains analyzed for a given genotype/age
- Neurodegeneration Index Scores (alphanumeric): individual neurodegeneration index numerical scores for each brain analyzed; each brain separated by a comma
Data type: alphanumeric, numeric
Figure2ELifespanData.csv
This file contains the lifespan data for control (elav>Luc) and neuron-specific Vps13 knockdown (elav>Vps13(i)) in aging flies. Data was initially collected for males and females separately; however, because no sex-specific differences were observed, the data reported in the associated published figure bins both sexes together. Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., elav>Luc is short for elav-GAL4 UAS-Luc).
Number of variables: 4
Number of header rows: 1
Number of rows: 84
Variable list:
- Genotype and replicate number (alphanumeric): the sex, genotype, and replicate number analyzed
- Age (alphanumeric): the age of the flies analyzed
- n alive (numeric): number of flies alive
- n dead (numeric): number of flies dead
Data type: alphanumeric, numeric
Figure2FLifespanData.csv
This file contains the lifespan data for control (24B>Luc) and muscle-specific Vps13 knockdown (24B>Vps13(i)) in aging flies. Data was initially collected for males and females separately; however, because no sex-specific differences were observed, the data reported in the associated published figure bins both sexes together. Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., 24B>Luc is short for 24 B-GAL4L4 UAS-Luc).
Number of variables: 4
Number of header rows: 1
Number of rows: 108
Variable list:
- Genotype and replicate number (alphanumeric): the sex, genotype, and replicate number analyzed
- Age (alphanumeric): the age of the flies analyzed
- n alive (numeric): number of flies alive
- n dead (numeric): number of flies dead
Data type: alphanumeric, numeric
Figure3ALethalPhaseData.csv
This file contains the lethal phase data for control and *hob-RNAi *(hob(i)) knockdown in specific tissues: ubiquitous (act-GAL4), neuron-specific (elav-GAL4), and muscle-specific (24B-GAL4). Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., act>Luc is short for act-GAL4 UAS-Luc).
Number of variables: 5
Number of header rows: 1
Number of rows: 6
Variable list:
- Genotype (alphanumeric): the genotype analyzed
- Number arrested as prepupa (PP) (numeric): animals that arrested development as prepupa
- Number arrested as pupa/incomplete pupa (P/iP) (numeric): animals that arrested development as pupa/incomplete pupa
- Number arrested as pharate adults (PA) (numeric): animals that arrested development as pharate adults
- Numbenclosedsed as adult (A) (numeric): animals that survived to adulthood
Data type: alphanumeric, numeric
Figure3BClimbingData.csv
This file contains the climbing data for 3-4-day 4-day-old control (elav>Luc) and neuron-specific RNAi knockdown (elav>hob(i)) flies. Data was initially collected for males and females separately; however, because no sex-specific differences were observed, the data reported in the associated published figure bins both sexes together. Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., elav>Luc is short for elav-GAL4 UAS-Luc).
Number of variables: 5
Number of header rows: 1
Number of rows: 12
Variable list:
- Genotype and replicate number (alphanumeric): the sex, genotype, and replicate number analyzed
- Total n (numeric): Total number of flies analyzed for the listed genotype
- Trial 1 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
- Trial 2 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
- Trial 3 (total number climbing) (numeric): number of flies successfully climbing for the listed genotype
Data type: alphanumeric, numeric
Figure3ENeurodegenerationIndexData.csv
This file contains the raw data for neurodegeneration index scoring in control (elav>Luc) and hob-RNAi (elav>hob(i)) brains during aging. Neurodegeneration indices are scored numerically from 0 to 4, depending on the abundance and size of vacuoles present in brain sections. Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., elav>Luc is short for elav-GAL4 UAS-Luc).
Number of variables: 4
Number of header rows: 1
Number of rows: 6
Variable list:
- Genotype (alphanumeric): the genotype being analyzed
- Age (alphanumeric): the age of the flies analyzed
- Total n brains (numeric): number of brains analyzed for a given genotype/age
- Neurodegeneration Index Scores (alphanumeric): individual neurodegeneration index numerical scores for each brain analyzed; each brain separated by a comma
Data type: alphanumeric, numeric
FigureS1CBodySizeQuantification.csv
This file contains the raw data used to calculate body size/pupa volume in control (w1118), hob mutant (hob2/hob3), and rescue (hob2/hob3, end hob-GFP) animals. The length and width of each pupa (in mm) were measured in Adobe Photoshop CS6, and pupa volume was calculated using a published formula.
Number of variables: 3
Number of header rows: 2
Number of rows: 50
Variable list:
- Genotype (alphanumeric): the genotype being analyzed
- pupa width (mm): the measured width of each pupa
- pupa length (mm): the measured length of each pupa
Data type: alphanumeric, numeric
FigureS1DLethalPhaseData.csv
This file contains the lethal phase data for control (w1118), hob mutant (hob2/hob3), and rescue (hob2/hob3, end hob-GFP) animals.
Number of variables: 5
Number of header rows: 1
Number of rows: 3
Variable list:
- Genotype (alphanumeric): the genotype analyzed
- Number arrested as prepupa (PP) (numeric): animals that arrested development as prepupa
- Number arrested as pupa/incomplete pupa (P/iP) (numeric): animals that arrested development as pupa/incomplete pupa
- Number arrested as pharate adults (PA) (numeric): animals that arrested development as pharate adults
- Numbeencloseded as adult (A) (numeric): animals that survived to adulthood
Data type: alphanumeric, numeric
Code/software
All data is provided in a .csv file format, which can be opened in any free text editing software.
Adult climbing assays
For adult climbing, groups of n~10 flies were collected at 1-2 days old and allowed to age for the appropriate time. Then, each group of flies of the appropriate age and genotype was placed into a 50 mL graduated cylinder and allowed to acclimate for 3 min. All flies were then tapped to the bottom of the cylinder, and the number of flies climbing 8 cm in 12 s was counted. This procedure was repeated three times for each group of flies, and the average of the three trials is reported on the graphs. Three independent biological replicates with approximately equal numbers of male and female flies were analyzed for each genotype. Note that the same elav>luc, elav>Vps13(i), 24B>luc, and 24B>Vps13(i) flies were used for climbing assays during aging and for lifespan analysis. During these experiments, flies were transferred to fresh food several times weekly, and the number of living flies was recorded prior to obtaining climbing data weekly.
Histology and neurodegeneration index (NI) quantification
Fly heads were severed and fixed overnight at 4oC in a 6:3:1 solution of ethanol:chloroform:glacial acetic acid, then washed and stored in 70% ethanol for histology. Heads were processed into paraffin using standard histological procedures; serial 5 μm sections spanning the whole fly head were obtained and stained with hematoxylin and eosin (H&E) (UW-Madison Translational Research Initiatives in Pathology lab (TRIP)). Images were obtained using a BioTek Lionheart FX Automated Microscope (10x objective) with Gen5 v.3.11 software, then rotated and cropped post-acquisition in Adobe Photoshop CS6. NI were quantified using the criteria described in Loewen & Ganetzky, 2018. The number and location of vacuoles in the brain determined the NI: 0 = no vacuoles; 1 = a few, small vacuoles mainly in optic lobes in only a few sections; 2 = many vacuoles in many sections, mainly in optic lobes, but possibly some in central brain; 3 = vacuoles become prominent in central brain and are abundant in optic lobes; 4 = many vacuoles in central brain, and some vacuoles in optic lobes and central brain are large. NI scoring was performed blind to age and genotype.
Loewen CA, Ganetzky B. Mito-nuclear interactions affecting lifespan and neurodegeneration in a drosophila model of leigh syndrome. Genetics. 2018 Apr 1;208(4):1535–52.
Body size and lethal phase analysis
Pupa imaging and body size and lethal phase analysis were performed as previously described (Neuman & Bashirullah, 2018).
Neuman SD, Bashirullah A. Hobbit regulates intracellular trafficking to drive insulin-dependent growth during Drosophila development. Development. 2018;145(11):dev161356.
