Data from: Specific expansion of motor cortical projections in a singing mouse
Data files
Mar 30, 2026 version files 19.08 MB
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metadata.csv
277 B
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MMF2_M194_bin.csv
1.32 MB
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MMF2_M194_count.csv
1.39 MB
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MMF2_M194_countN.csv
2.36 MB
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MMF3_M194_bin.csv
886.98 KB
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MMF3_M194_count.csv
938.09 KB
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MMF3_M194_countN.csv
1.60 MB
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MMF5_M220_bin.csv
1.22 MB
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MMF5_M220_count.csv
1.32 MB
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MMF5_M220_countN.csv
2.24 MB
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MMM1_M194_bin.csv
751.68 KB
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MMM1_M194_count.csv
794.42 KB
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MMM1_M194_countN.csv
1.34 MB
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MMM4_M220_bin.csv
413.12 KB
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MMM4_M220_count.csv
446.74 KB
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MMM4_M220_countN.csv
757.16 KB
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README.md
3.25 KB
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STF3_M194_bin.csv
24.90 KB
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STF3_M194_count.csv
26.59 KB
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STF3_M194_countN.csv
44.82 KB
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STF4_M220_bin.csv
62.91 KB
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STF4_M220_count.csv
68.39 KB
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STF4_M220_countN.csv
114.68 KB
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STF6_M220_bin.csv
72.70 KB
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STF6_M220_count.csv
78.86 KB
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STF6_M220_countN.csv
133.10 KB
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STM1_M194_bin.csv
42.88 KB
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STM1_M194_count.csv
45.97 KB
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STM1_M194_countN.csv
78.36 KB
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STM2_M194_bin.csv
32.32 KB
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STM2_M194_count.csv
34.54 KB
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STM2_M194_countN.csv
57.12 KB
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STM5_M220_bin.csv
34.75 KB
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STM5_M220_count.csv
38.42 KB
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STM5_M220_countN.csv
69.15 KB
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STM7_M220_bin.csv
57.28 KB
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STM7_M220_count.csv
62.81 KB
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STM7_M220_countN.csv
112.68 KB
Abstract
Data and analysis for Isko et al., 2026. Behavioral data and analysis as well as MAPseq data and analysis included.
Elucidating how modifications in neural circuit architecture drive behavioral innovation remains a key challenge in neuroscience and evolutionary biology. In mammals, the neocortex is posited to play a critical role in facilitating rapid behavioral innovations, such as language. Although changes in long-range connectivity have been proposed to underlie such innovations, these hypotheses largely remain untested quantitatively, partly due to the lack of high-throughput neuronal projection data at single-neuron resolution across species. To address this, we studied the Alston’s singing mouse (Scotinomys teguina), which exhibits a striking vocal behavior absent in the laboratory mouse (Mus musculus), to quantitatively determine species-specific changes in motor cortical projections throughout the brain. We used bulk tracing, serial two-photon tomography, and high-throughput DNA sequencing of over 76,000 barcoded neurons to discover a specific and substantial expansion (~3 fold) of orofacial motor cortical (OMC) projections to the auditory cortical region (AudR) and the midbrain periaqueductal gray (PAG), both implicated in vocal behaviors. Moreover, analysis of individual OMC neurons’ projection motifs revealed preferential expansion of exclusive projections to AudR in the singing mouse. Our results suggest that selective expansion of ancestral motor cortical projections may lead to behavioral divergence over short timescales, allowing mechanistic investigations of enhanced cortical control over vocalizations — a crucial preadaptation for human language. This approach of comparing recently-diverged species with drastic behavioral divergences can be readily generalized across other model clades to discover quantitative rules of neural circuit evolution.
Dataset DOI: 10.5061/dryad.8kprr4z2p
Description of the data and file structure
For MAPseq analysis, a total of 12 animals were processed, 5 lab mice and 7 singing mice.
metadata.csv contains information on the mouse identity, species, and batch.
- Species short hands are used,
MMusfor Mus musculus andSTegfor Scotinomys teguina - Data was generated in 2 independent batches (
M194andM220)
For every mouse, 3 data files are supplied. In all cases, csvs encode matrices where each row is a unique barcode (i.e. neuron) and columns are the target regions collected.
[Mouse]_[dataset]_count.csv- Contains raw count data
[Mouse]_[dataset]_bin.csv- Contains binarized data for >=4 raw counts
[Mouse]_[dataset]_countN.csv- Contains count data normalized to RNA spike-ins
Files and variables
File: metadata.csv
Description: Meatadata file that contains information on the animals used to generate data.
Variables
- mice: animal identifier
- species: either mus musculus (MMus) or scotinomys teguina (STeg)
- sex: animal sex
- dataset: batch data was generated in (M194 or M220)
Data Files: [mouse]_[dataset]_[dataType].csv
The data files follow the naming convention [mouse]_[dataset]_[dataType].csv
- Mice and their corresponding datasets used in the study can be found in the metadata file (
metadata.csv) - dataTypes are
count(raw counts),bin(binarized counts), andcountN(normalized counts)
All data files share the same variables, each row is a barcode (i.e. neuron) and each column (i.e. variable) is a target region.
Variables
- OB: Olfactory bulb
- OMCi: Ipsilateral orofacial motor cortex
- ACAi: Ipsilateral anterior cingulate cortex
- OMCc: Contralateral olfactory cortex
- ACAc: Contralateral anterior cingulate cortex
- AUD: Auditory region
- STR: Striatum
- TH: Thalamus
- HY: Hypothalamus
- AMY: Amygdala
- HIP: Hippocampus
- SNr: Substantia nigra
- SCm: Superior colliculus motor
- PG: Pontine gray
- PAG: Periaqueductal gray
- RN: Hindbrain
List of data files
- MMF2_M194_bin.csv
- MMF2_M194_count.csv
- MMF2_M194_countN.csv
- MMF3_M194_bin.csv
- MMF3_M194_count.csv
- MMF3_M194_countN.csv
- MMF5_M220_bin.csv
- MMF5_M220_count.csv
- MMF5_M220_countN.csv
- MMM1_M194_bin.csv
- MMM1_M194_count.csv
- MMM1_M194_countN.csv
- MMM4_M220_bin.csv
- MMM4_M220_count.csv
- MMM4_M220_countN.csv
- STF3_M194_bin.csv
- STF3_M194_count.csv
- STF3_M194_countN.csv
- STF4_M220_bin.csv
- STF4_M220_count.csv
- STF4_M220_countN.csv
- STF6_M220_bin.csv
- STF6_M220_count.csv
- STF6_M220_countN.csv
- STM1_M194_bin.csv
- STM1_M194_count.csv
- STM1_M194_countN.csv
- STM2_M194_bin.csv
- STM2_M194_count.csv
- STM2_M194_countN.csv
- STM5_M220_bin.csv
- STM5_M220_count.csv
- STM5_M220_countN.csv
- STM7_M220_bin.csv
- STM7_M220_count.csv
- STM7_M220_countN.csv
