Data from: Cognitive tasks could be biased towards generalists: a lesson from wild non-eusocial bees
Data files
Jun 05, 2025 version files 6.50 MB
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01_Wrangling.qmd
37.63 KB
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02_Figures.qmd
22.49 KB
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03_Analyses.qmd
13.61 KB
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BeeTree_aug_15_2024.nwk
6.02 MB
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Collado_data.csv
47.16 KB
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combined_data.csv
232.19 KB
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first_choices.csv
591 B
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Kashetsky_Collado_tree.nwk
2.11 KB
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Kashetsky_data.csv
81.20 KB
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Paper_strip_reflectance.csv
31.75 KB
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README.md
9.33 KB
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Species_names.csv
1.09 KB
Jun 05, 2025 version files 6.50 MB
-
01_Wrangling.qmd
37.63 KB
-
02_Figures.qmd
22.49 KB
-
03_Analyses.qmd
13.57 KB
-
BeeTree_aug_15_2024.nwk
6.02 MB
-
Collado_data.csv
47.16 KB
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combined_data.csv
232.19 KB
-
first_choices.csv
591 B
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Kashetsky_Collado_tree.nwk
2.11 KB
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Kashetsky_data.csv
81.20 KB
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Paper_strip_reflectance.csv
31.75 KB
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README.md
9.33 KB
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Species_names.csv
1.09 KB
Abstract
In this study, we compared associative learning performance and exploratory tendencies between dietary specialist and generalist bee (Anthophila) species using a closed-environment task with free-moving bees called the free-moving proboscis-extension response (FMPER). We found lower participation rates than expected, especially among specialist species, which hindered our ability to answer our primary question. Thus, we combined our data with another published dataset that reported results from the same learning task but for several different bee species (again including specialists and generalists) to investigate the relation of diet breadth with associative learning and exploration across a broader species assemblage. The data are grouped by individual bee ID, for which each individual has information about life history traits (taxonomic information, inter-tegular distance (proxy for body size), diet breadth) and values for the 8 experimental trials of the FMPER task (time until drinking the correct strip, time until first drink, if first choice was correct, participation). We present our files for organizing data, creating figures, and analyzing the data. Phylogeny-informed generalized linear mixed models indicate that neither specialists nor generalists increased accuracy throughout the task, although both diet breadths became faster at drinking from the rewarding strip. Bees decreased their drinking latency—a measure of exploration—throughout the experiment, with no effect of diet breadth. However, specialists became less likely to participate over the course of the task compared to generalists. Our results suggest that specialist and generalist bees have experienced similar selection for associative learning ability, and that specialists are hesitant to continue interacting with novel stimuli.
Cognitive tasks could be biased towards generalists: A lesson from wild non-eusocial bees
The R project contains the following data files:
- 01_Wrangling: script that cleans and organizes the data into the format we use for figures and analyses
- 02_Figures: script for making the figures
- 03_Analyses: script for analysing the data
- Data/Kashetsky_data.csv: raw data file from the current study. NP = the bee did not participate, NA = not available because the bee did not participate or because we did not collect that information.
- ID: identification code for each individual bee
- Genus: genus of the individual
- Species: lowest level of identification (species, subgenus, "spp." for genera with multiple individuals, "sp." for genera with a single individual)
- Collection: In the Forrest Lab collection at uOttawa or the National Canadian collection of Insects, Arachnids and Nematodes in Ottawa
- Exclude: yes for excluding this individual for some reason (e.g., mistake while conducting experiment) or no for keeping them in the dataframe
- Diet.breadth: dietary breadth assigned using sources outlined in Table S1
- ITD: intertegular distance, proxy for body size, in mm
- Date: date of the capture and experiment
- Time.captured: time of bee captured
- Time.began: time we began the experiment
- Acclimation: time between capture and beginning the experiment
- Cooler, table: time spent in the cooler then on the table
- Plant: plant the bee was caught on
- Location: location of the experiment in Ottawa
- Volunteer: which person was volunteering that day, code used for anonymity
- Temperature: temperature that day, in degrees Celsius
- Humidity: humidity, in percentage
- FMPER.sucrose.colour: which colour was rewarding. FMPER = free-moving proboscis extensive response
- First.position.of.sucrose: rewarding strip presented on which side of the vial, left or right for the first trial
- Position.of.sucrose.2 - Position.of.sucrose.7: rewarding strip presented on which side of the vial, left or right, for the remaining trials (alternated each trial)
- Drink.sucrose.1 - Drink.sucrose.7: time until the bee drank from the rewarding strip (mm:ss)
- Drink.salt.1 - Drink.salt.7: time until the bee drank from the aversive strip (mm:ss)
- Success.1 - Success.7: if the bee drank from the rewarding strip
- Salt.exploration.1 - Salt.exploration.7: if the bee at least touched the salt strip
- Position.of.prev.rewarded.colour: the test trial, which side the unrewarding strip is presented on
- Drink.prev.rew: if the bee drank from the strip of the colour previously associated with the rewarding solution
- Drink.prev.aver: if the bee drank from the strip of the colour previously associated with the aversive solution
- FMPER.Success: if they drank from the strip of the colour previously associated with the rewarding solution
- Prev.aver.exploration: if they at least touched the strip of the colour previously associated with the aversive solution
- RL.sucrose.colour: we attempted reversal learning, but did not use this data due to lack of participation. The colour that was aversive in the first 8 trials was now rewarding. RL = reversal learning.
- Position.of.sucrose.9 - Position.of.sucrose.15: rewarding strip presented on which side of the vial, left or right, for the remaining trials (alternated each trial)
- Drink.sucrose.9 - Drink.sucrose.15: time until the bee drank from the rewarding strip (mm:ss)
- Drink.salt.9 - Drink.salt.15: time until the bee drank from the aversive strip (mm:ss)
- Success.9 - Success.15: if the bee drank from the rewarding strip
- Salt.exploration.9 - Salt.exploration.15: if the bee at least touched the salt strip
- RL.Position.of.prev.rewarded.colour: the test trial, which side the unrewarding strip is presented on
- RL.Drink.prev.rew: if the bee drank from the strip of the colour previously associated with the rewarding solution
- RL.Drink.prev.aver: if the bee drank from the strip of the colour previously associated with the aversive solution
- RL.FMPER.Success: if they drank from the strip of the colour previously associated with the rewarding solution
- RL.Prev.aver.exploration: if they at least touched the strip of the colour previously associated with the aversive solution
- Notes: comments from the experiment about the bees
- Data/Collado_data.csv: data file from Collado et al. (2021) (metadata from their available data). NA = not available because the bee did not participate. RIP = the bee died.
- ID: Individual identification of experimental subjects
- Genus: Taxonomical genus of the individual
- Species: Taxonomical species of the individual
- Date: Date of capture
- Capture time: Time of capture
- Plant: Plant in which the individual was captured
- Place: The location where the individual was captured
- Sex: Sex of the individual
- IT (mm): Intertegular distance (a proxy for body size)
- Age.signals: Indicates whether the bee shows signs of being old
- Observer: The person who conducted the experiment
- Correct.cue: Colour of the correct cue (associated with sugar)
- First.position: Starting side of the correct cue during the experiment
- PER.sugar1 - PER.sugar7: Time until touching the sugared cue in trial 1 through 7, in seconds
- PER.water1- PER.water7: Time until touching the watered cue in trial 1 through 7, in seconds
- Success1 - Success7: Success in touching the correct sugared cue in trial 1 through 7
- Water.exploring1 - Water.exploring7: Whether the watered cue was touched in trial 1 through 7
- PER.sugar.test: Time until touching the sugared cue in the test trial, in seconds
- PER.water.test: Time until touching the watered cue in the test trial, in seconds
- Success.test: Success in touching the correct sugared cue in the test trial
- Water.exploring.test: Whether the watered cue was touched in the test trial
- Notes: Additional observations or comments
- Experimental tube: Experimental tube
- Brain.weight: Weight of the bee's brain, in mg
- Data/combined_data.csv: cleaned, final data file used for the figures and analyses. NP = the bee did not participate, NA = not available because the bee did not participate or because we did not collect that information, RIP = the bee died.
- ID: identification code for each individual bee
- Genus: genus of the individual
- Species: lowest level of identification (species, subgenus, "spp." for genera with multiple individuals, "sp." for genera with a single individual)
- Diet: dietary breadth assigned using sources outlined in Table S1
- Sex: residual column from Collado et al. (2021), only females are included in the figures and analyses
- ITD: intertegular distance, proxy for body size, in mm
- Study: dataset the individual was tested in
- Correct.cue: rewarding colour of stimuli
- Trial: seven training trials or the test (8th) trial
- Success: if the bee drank from the sucrose strip
- PER_sugar_scaled: number of seconds until the bee drank the sucrose strip, scaled to the mean sucrose latency for each dataset and expressed in SD units
- Exploration_min: minimum value of an individual's drinking latency, identical to the maximum drinking latency value if the individual participated. If the individual did not participate, this value is the length of the trial (900s for Kashetsky et al. dataset and 120s for Collado et al. (2021))
- Exploration_max: maximum value of an individual's drinking latency, identical to the minimum drinking latency value if the individual participated. If the individual did not participate, this value is infinity
- First_choice: if an individual first drank from the correct strip (1) or the aversive/no-rewarding strip (1)
- Participation_binary_no_NA: if an individual participated in that trial, including trials where a bee was not tested as 0
- Num_Participated: number of individuals that participated grouped by diet and trial
- Total_bees_by_diet: total number of individuals per diet in the combined dataset
- Participation: proportion of participating bees calculated by dividing Num_Participated by Total_bees_by_diet
- Total_choices_bin: if a bee drank from either strip (similar to participation, but not including bees that did not participate)
- First_choices.csv: a dataframe to calculate the proportion of bees that chose the correct strip on their first drink (Prop_correct_first_choice) for visualization purposes. The number of bees within a trial that drank only from the rewarding stimulus or from the rewarding stimulus before the aversive/non-rewarding strip (correct_choices) was divided by the total number of bees participated within a trial (Total_choices)
- Data/Paper_strip_reflectance.csv: output from the photospectromoter measuring the reflectance of the stimuli (blue and yellow card stock)
- Phylogeny/BeeTree_aug_15_2024.nwk: file from BeeTree creating the phylogenetic tree, newick file
- Phylogeny/Species_names.csv: list of names we want to keep for the phylogenetic tree; required because of a software issue with BeeTree
- Phylogeny/Kashetsky_Collado_tree.nwk: final phylogenetic tree used for the analyses and figure, newick file
