Data from: Mechanistic dissection of BLTP2 targeting to ER-PM contact sites
Data files
Apr 22, 2026 version files 165.96 KB
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BilboRawData.zip
150.89 KB
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README.md
15.07 KB
Abstract
The bridge-like lipid transfer proteins (BLTPs) are a novel superfamily of rod-shaped lipid transporters that engage in bulk non-vesicular movement of lipids at organelle membrane contact sites. The molecular and cellular functions of these proteins are still emerging; however, it is clear that one key aspect that regulates BLTP function is targeting to the appropriate membrane contact site(s). Here, we use Drosophila as a model system to dissect the mechanisms that drive targeting of BLTP2 (hobbit in Drosophila) to endoplasmic reticulum-plasma membrane (ER-PM) contact sites. We demonstrate that a conserved adapter protein, which we name bilbobaggins (bbo), is required for targeting of Hobbit to ER-PM contacts; importantly, loss of bbo phenocopies loss of hobbit, indicating that bbo is required for hobbit function. Additionally, our structure-function analyses show that cis-acting sequences in the C-terminal tail of Hobbit are also required for ER-PM targeting. Crucially, our data indicate that these cis-acting sequences and Bbo binding are independent and likely sequential mechanisms that we propose function like a “hook” and “latch” to govern Hobbit targeting. Thus, we define a new regulatory paradigm governing targeting of BLTPs to membrane contact sites.
Dataset DOI: 10.5061/dryad.9w0vt4bwm
Description of the data and file structure
This file contains the raw data used to generate the figures published in the preprint:
Mechanistic Dissection of BLTP2 targeting to ER-PM contact sites.
Sarah D. Neuman, Amy T. Cavanagh, Nicole Sheffels, Elizabeth Conibear, Arash Bashirullah
This manuscript used Drosophila as a model system to investigate the mechanisms that regulate targeting of the bridge-like lipid transfer protein BLTP2 (hobbit in Drosophila) to endoplasmic reticulum-plasma membrane (ER-PM) contact sites. This dataset includes quantification of Hobbit cortical puncta, quantification of co-localization by Pearson’s Correlation Coefficient, phylogenetic analysis, absolute quantification of mRNA transcript levels, lethal phase data, body size data, and mucin granule area data.
Each file name contains a reference to the figure where the data is published, as well as a description of the type of data included in the file.
File: BilboRawData.zip
Figure1CLethalPhaseData.csv
This file contains the lethal phase data for control, ubiquitous RNAi knockdown of hobbit (act>hob(i)), and ubiquitous RNAi knockdown of bbo (act>bbo(i)). Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., act>hob(i) is short for act-GAL4 UAS-hob(i)).
Number of variables: 5
Number of header rows: 1
Number of rows: 3
Variable list:
Genotype (alphanumeric): the genotype analyzed
Number arrested as prepupa (PP) (numeric): animals that arrested development as prepupae
Number arrested as pupa/incomplete pupa (P/iP) (numeric): animals that arrested development as pupae/incomplete pupae
Number arrested as pharate adult (PA): animals that arrested development as pharate adults
Number eclosed as adult (A) (numeric): animals that survived to adulthood
Data type: alphanumeric, numeric
Figure1EMucinGranuleArea.csv
This file contains mucin granule area measurements (in μm2) for control, hobbit-RNAi (hob(i)), and bbo-RNAi (bbo(i)). Three replicates derived from independent salivary glands are included for each genotype.
Number of variables: 2
Number of header rows: 2
Number of rows: 34
Variable list:
Genotype (alphanumeric): the genotype being analyzed
Granule area (numeric): Individual mucin granule area, measured in μm2. Three replicates derived from independent salivary glands are included for each genotype.
Data type: numeric, alphanumeric
Figure2BWholeAnimalCopyNumber.csv
This file contains the absolute quantification (mRNA copy number) of bbo isoforms A/G, B, C/E/F, and D in control whole animals at the onset of metamorphosis (0 h PF). Three independently isolated biological replicates are measured.
Number of variables: 5
Number of header rows: 1
Number of rows: 3
Variable list:
Genotype (alphanumeric): the genotype, developmental stage, and replicate analyzed
bbo isoform A/G mRNA copy number (numeric): absolute number of bbo A/G transcripts in the sample
bbo isoform B mRNA copy number (numeric): absolute number of bbo B transcripts in the sample
bbo isoform C/E/F mRNA copy number (numeric): absolute number of bbo C/E/F transcripts in the sample
bbo isoform D mRNA copy number (numeric): absolute number of bbo D transcripts in the sample
Data type: alphanumeric, numeric
Figure2CSalivaryGlandCopyNumber.csv
This file contains the absolute quantification (mRNA copy number) of bbo isoforms A/G, B, C/E/F, and D in salivary glands dissected from control animals at the onset of metamorphosis (0 h PF). Three independently isolated biological replicates are measured.
Number of variables: 5
Number of header rows: 1
Number of rows: 3
Variable list:
Genotype (alphanumeric): the genotype, developmental stage, and replicate analyzed
bbo isoform A/G mRNA copy number (numeric): absolute number of bbo A/G transcripts in the sample
bbo isoform B mRNA copy number (numeric): absolute number of bbo B transcripts in the sample
bbo isoform C/E/F mRNA copy number (numeric): absolute number of bbo C/E/F transcripts in the sample
bbo isoform D mRNA copy number (numeric): absolute number of bbo D transcripts in the sample
Data type: alphanumeric, numeric
Figure2DLethalPhaseData.csv
This file contains the lethal phase data for control, bbo mutant animals (bboKO/Df), rescue of bbo mutant animals with ubiquitous expression of bbo isoform B (bboKO/Df; act>bbo B-GFP/+), and rescue of bbo mutant animals with ubiquitous expression of bbo isoform C (bboKO/Df; act>bboC-GFP/+). Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., act>bbo B-GFP is short for act-GAL4 UAS-bbo B-GFP).
Number of variables: 4
Number of header rows: 1
Number of rows: 4
Variable list:
Genotype (alphanumeric): the genotype analyzed
Number arrested as larva (numeric): animals that arrested development as larvae
Number arrested as pupa (numeric): animals that arrested development as pupae
Number eclosed as adult (A) (numeric): animals that survived to adulthood
Data type: alphanumeric, numeric
Figure3BHobCorticalPunctaCounts.csv
This file contains cortical puncta counts for wild-type Hobbit protein in controls (Sgs3>hob-mCherry/UAS-Luc) and bbo RNAi knockdown (Sgs3>hob-mCherry/UAS-bbo-RNAi). Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., Sgs3>hob-mCherry is short for Sgs3-GAL4 UAS-hob-mCherry).
Number of variables: 2
Number of header rows: 1
Number of rows: 2
Variable list:
Genotype (alphanumeric): the genotype combination used to measure cortical puncta numbers
Hobbit cortical puncta number (numeric): the number of Hobbit cortical puncta counted in each image (10 images quantified per genotype)
Data type: numeric, alphanumeric
Figure3EColocalizationData.csv
This file contains quantification of colocalization (Pearson’s correlation coefficient) between wild-type Hobbit and constitutively active Stim (StimDDAA) in controls (UAS-StimDDAA-GFP/+; Sgs3>hob-mCherry/+) and bbo RNAi knockdown (UAS-StimDDAA-GFP/+; Sgs3>hob-mCherry/UAS-bbo-RNAi). Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., Sgs3>hob-mCherry is short for Sgs3-GAL4 UAS-hob-mCherry).
Number of variables: 2
Number of header rows: 1
Number of rows: 2
Variable list:
Genotype: the genotype of the sample where colocalization between Hobbit and StimDDAA is being quantified
Pearson’s correlation coefficient (numeric): the numerical value for Pearson’s correlation coefficient in each image (10 images quantified for each genotype)
Data type: numeric, alphanumeric
Figure4ABboConservation.csv
This dataset contains the Uniprot ID’s and NCBI Taxonomy ID’s used to generate a phylogenetic tree showing Bbo isoform B conservation.
Number of variables: 2
Number of header rows: 1
Number of rows: 3670
Variable list:
Uniprot ID (alphanumeric): the Uniprot accession code for proteins identified by HMMER as orthologous to Bbo isoform B
NCBI Taxonomy ID (numeric): the NCBI taxonomic identifier for the species associated with each Uniprot ID
Data type: numeric, alphanumeric
Figure4ABboTree.txt
This file contains the data used to generate the phylogenetic tree depicting Bbo isoform B conservation in Figure 4E. The tree data is in Newick format.
Data type: alphanumeric
Figure4AHobbitConservation.csv
This dataset contains the Uniprot ID’s and NCBI Taxonomy ID’s used to generate a phylogenetic tree showing Hobbit conservation.
Number of variables: 2
Number of header rows: 1
Number of rows: 4281
Variable list:
Uniprot ID (alphanumeric): the Uniprot accession code for proteins identified by HMMER as orthologous to Hobbit
NCBI Taxonomy ID (numeric): the NCBI taxonomic identifier for the species associated with each Uniprot ID
Data type: numeric, alphanumeric
Figure4AHobbitTree.txt
This file contains the data used to generate the phylogenetic tree depicting Hobbit conservation in #### Figure 4E. The tree data is in Newick format.
Data type: alphanumeric
Figure4EColocalizationData.csv
This file contains quantification of colocalization (Pearson’s correlation coefficient) between wild-type Hobbit or HobbitΔhandle and constitutively active Stim (StimDDAA).
Number of variables: 2
Number of header rows: 1
Number of rows: 2
Variable list:
Proteins (alphanumeric): the specific pair of proteins whose colocalization is being quantified
Pearson’s correlation coefficient (numeric): the numerical value for Pearson’s correlation coefficient in each image (10 images quantified for each protein pair)
Data type: alphanumeric, numeric
Figure5DHobCorticalPunctaCounts.csv
This file contains cortical puncta counts for wild-type Hobbit protein or C-terminally truncated Hobbit protein (HobΔC82) in controls or overexpression of Bbo isoform B or Bbo isoform C. Note that “>” in genotypes is shorthand for GAL4, UAS (e.g., Sgs3>hob-mCherry is short for Sgs3-GAL4 UAS-hob-mCherry).
Number of variables: 2
Number of header rows: 1
Number of rows: 4
Variable list:
Genotype (alphanumeric): the genotype combination used to measure cortical puncta numbers
Hobbit cortical puncta number (numeric): the number of Hobbit cortical puncta counted in each image (10-11 images quantified per genotype)
Data type: numeric, alphanumeric
Figure5EColocalizationData.csv
This file contains quantification of colocalization (Pearson’s correlation coefficient) between C-terminally truncated Hobbit (HobΔC82) and Bbo isoform B or Bbo isoform C.
Number of variables: 2
Number of header rows: 1
Number of rows: 2
Variable list:
Proteins (alphanumeric): the specific pair of proteins whose colocalization is being quantified
Pearson’s correlation coefficient (numeric): the numerical value for Pearson’s correlation coefficient in each image (10 images quantified for each protein pair)
Data type: alphanumeric, numeric
Figure6BHobTruncationPunctaCounts.csv
This file contains the cortical puncta counts for full-length and C-terminal truncations of Hobbit.
Number of variables: 2
Number of header rows: 1
Number of rows: 5
Variable list:
Hob protein variant (alphanumeric): the Hobbit C-terminal truncation analyzed
Cortical puncta count (numeric): the number of Hobbit cortical puncta counted in each image (10 images quantified for each Hobbit variant)
Data type: numeric, alphanumeric
Figure6EHobCorticalPunctaCounts.csv
This file contains cortical puncta counts for wild-type Hobbit and HobΔhandle with or without co-overexpression of Bbo isoform B or Bbo isoform C.
Number of variables: 2
Number of header rows: 1
Number of rows: 6
Variable list:
Genotype (alphanumeric): the genotype combination used to measure cortical puncta numbers
Hobbit cortical puncta number (numeric): the number of Hobbit cortical puncta counted in each image (10-12 images quantified per variation)
Data type: numeric, alphanumeric
Figure6FColocalizationData.csv
This file contains quantification of colocalization (Pearson’s correlation coefficient) between variants of Hobbit and Bbo.
Number of variables: 2
Number of header rows: 1
Number of rows: 4
Variable list:
Proteins (alphanumeric): the specific pair of proteins whose colocalization is being quantified
Pearson’s correlation coefficient (numeric): the numerical value for Pearson’s correlation coefficient in each image (10-11 images quantified for each protein pair)
Data type: alphanumeric, numeric
FigureS3BBboAConservation.csv
This dataset contains the Uniprot ID’s and NCBI Taxonomy ID’s used to generate a phylogenetic tree showing Bbo isoform A/G conservation.
Number of variables: 2
Number of header rows: 1
Number of rows: 109
Variable list:
Uniprot ID (alphanumeric): the Uniprot accession code for proteins identified by HMMER as orthologous to Bbo isoform A/G
NCBI Taxonomy ID (numeric): the NCBI taxonomic identifier for the species associated with each Uniprot ID
Data type: numeric, alphanumeric
FigureS3BBboATree.txt
This file contains the data used to generate the phylogenetic tree depicting Bbo isoform A/G conservation in #### Figure S2C. The tree data is in Newick format.
Data type: alphanumeric
FigureS3BBboCConservation.csv
This dataset contains the Uniprot ID’s and NCBI Taxonomy ID’s used to generate a phylogenetic tree showing Bbo isoform C/E/F conservation.
Number of variables: 2
Number of header rows: 1
Number of rows: 95
Variable list:
Uniprot ID (alphanumeric): the Uniprot accession code for proteins identified by HMMER as orthologous to Bbo isoform C/E/F
NCBI Taxonomy ID (numeric): the NCBI taxonomic identifier for the species associated with each Uniprot ID
Data type: numeric, alphanumeric
FigureS3BBboCTree.txt
This file contains the data used to generate the phylogenetic tree depicting Bbo isoform C/E/F conservation in #### Figure S2D. The tree data is in Newick format.
Data type: alphanumeric
FigureS4CLethalPhaseData.csv
This file contains the lethal phase data for control, hobΔhandle rescue control (hob2/hob3, UAS-hobΔhandle-mCherry), and hobΔhandle rescue (hob2, act-GAL4/hob3, UAS-hobΔhandle-mCherry.
Number of variables: 5
Number of header rows: 1
Number of rows: 3
Variable list:
Genotype (alphanumeric): the genotype analyzed
Number arrested as prepupa (PP) (numeric): animals that arrested development as prepupae
Number arrested as pupa/incomplete pupa (P/iP) (numeric): animals that arrested development as pupae or incomplete pupae
Number arrested as pharate adult (PA) (numeric): animals that arrested development as pharate adults
Number eclosed as adult (A) (numeric): animals that survived to adulthood
Data type: alphanumeric, numeric
FigureS4CPupaVolumeData.csv
This file contains the raw data used to calculate body size/pupa volume in control, hobΔhandle rescue control (hob2/hob3, UAS-hobΔhandle-mCherry), and hobΔhandle rescue (hob2, act-GAL4/hob3, UAS-hobΔhandle-mCherry. The length and width of each pupa (in mm) was measured in Adobe Photoshop CS6, and pupa volume was calculated using a published formula.
Number of variables: 3
Number of header rows: 2
Number of rows: 50
Variable list:
Genotype (alphanumeric): the genotype being analyzed
pupa width (mm) (numeric): the measured width of each pupa
pupa length (mm) (numeric): the measured length of each pupa
Data type: alphanumeric, numeric
Code/software
Data are provided as .csv or .txt files, which can be opened by any freely available word processing software.
