Data and code from: Diversity of Aβ aggregates produced in a gut-based Drosophila model of Alzheimer’s disease
Data files
Aug 20, 2026 version files 445.90 KB
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Data_gut_leakage_v1_3.xlsx
9.37 KB
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Data_MSD_20240821v1_3.xlsx
19.77 KB
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Data_MSD_240221v1_3.xlsx
15.60 KB
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Data_Quantification_of_aggregates.prism
396 KB
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README.md
5.16 KB
Abstract
Alzheimer’s disease (AD) is a neurodegenerative disease manifested by memory loss and premature death. One major histopathological hallmark of AD is the amyloid plaques formed by aggregates of the amyloid-β (Aβ) peptide and the Aβ aggregation process results in amyloid fibrils with different structures. Herein, we investigate the heterogeneity of Aβ aggregates produced by Drosophila melanogaster expressing the Aβ1-42 peptide with the Arctic mutation E22G (Arctic flies) or a dimeric construct of Aβ1-42 (T22Aβ1-42 flies) in the digestive tract. Staining of the gut of the flies using luminescent conjugated oligothiophenes (LCOs) revealed that the amount of Aβ aggregates increased in both genotypes with age. The LCOs also exhibited distinct staining patterns in the flies. The expression of T22Aβ1-42 resulted in a heavier Aβ load compared to Aβ1-42 with the Arctic mutation. Since the genotypes have similar median survival times, the result indicates that the toxicity of the combined number of aggregates in the Arctic flies is higher compared to the T22Aβ1-42 flies. Stability measurements showed that the most accumulated Aβ species in the Arctic and the T22Aβ1-42 flies were found in the 4 M and 5 M Gua-HCl-fraction, respectively. This indicates that prefibrillar Aβ aggregates constitute the toxic species in Arctic flies while the cause of death in T22Aβ1-42 flies might be the massive load of insoluble aggregates. The study shows that even though the different Aβ peptides resulted in an equal reduction of the lifespan, they formed an array of different aggregates confirming the heterogeneity of this process. Overall, our findings support that distinct Aβ aggregates can exhibit different pathological effects, and we foresee that our Drosophila models can potentially aid in identifying anti-Aβ agents targeting different types of aggregated Aβ species.
Dataset DOI: 10.5061/dryad.b2rbnzssq
Description of the data and file structure
- Smurf assay: The gut leakage analysis was performed when the flies were 8 days old. The smurf phenotype of the flies was analysed where spreading of the blue dye in the hemocoel and body indicated gut leakage. Data were processed in excel.
- Quantifications of the co-staining in T22Aβ1-42- and Arctic flies: Nonbiased scoring of Aβ1-42 species per mm2 in Arctic- and T22Aβ1-42 flies at day 8, n=6. Only Aβ1-42 species where HS-84 or HS-169 colocalized with the antibody were counted. Data were processed in GraphPad Software 9
- Quantification of Aβ species by MSD analysis: Data were collected using A V-PLEX Human Aβ1-42 Peptide (6E10) kit (K151LBE-1, Meso Scale Discovery). Data were transformed to excel.
- Statistical analysis: The data were analyzed using GraphPad Software 9.
Files and variables
File: Data_gut_leakage_v1_3.xlsx
Description: Data from the gut leakage analysis.
Variables
- Vial#: Refers to the number of the vial that was examined
- Age (days): Refers to the age of the flies in days
- Genotype: Refers to the genotype of the fly
- no smurf: Refers to the amout of flies with no smurf phenotype
- Unsure: Refers to the amout of flies that have an unsure smurf phenotype
- Smurf: Refers to the amount of flies with smurf phenotype
File: Data_MSD_20240821v1_3.xlsx
Description: Data from quantification of Aβ species by MSD analysis at 0, 2.5, 4 and 5 M Gua
n/a = not applicable
Variables
Sheet - Raw data: This sheet contains all raw data
- Sample: Refers to the unit tested within a serie.
- Assay: Refers to the MSD assay that was used.
- Well: Refers to the number of the well that was used in the MSD plate.
- Spot: Refers to the spot in the well that was used in the MSD plate.
- Dilution: Refers to the dilution factor.
- Concentration: Values of concentrations that were used in the standard.
- Signal: Refers to raw electrochemiluminescence (ECL) signal.
- Adjusted signal: Refers to raw electrochemiluminescence (ECL) signal after correcting for background noise, plate effects, or other non‑specific sources of light.
- Mean: Refers to the mean of raw electrochemiluminescence (ECL) signals for repeats.
- Adj. Sig. Mean: Refers to the mean of raw electrochemiluminescence (ECL) signal after correcting for background noise, plate effects, or other non‑specific sources of light for repeats.
- CV: Refers to coefficient of variation. It is a measure of how consistent (or variable) the replicate measurements are.
- % Recover: Refers to how close the measured value is to the expected value.
- % Recovery Mean: Refers to the mean of % Recover for repets
- Calc. Concentration (pg/ml): Refers to calculated concentration of the tested sample from the measurement.
- Calc. Conc. Mean (pg/ml): Refers to calculated mean concentration of tested replicates from the measurement.
- Calc. Conc. CV: Refers to coefficient of variation for the calculated concentrations.
File: Data_MSD_240221v1_3.xlsx
Description: Data from quantification of Aβ species by MSD analysis ot 0 and 5 M Gua
n/a = not applicable
Variables
Sheet - Raw data: This sheet contains all raw data
- Sample: Refers to the unit tested within a serie.
- Assay: Refers to the MSD assay that was used.
- Well: Refers to the number of the well that was used in the MSD plate.
- Spot: Refers to the spot in the well that was used in the MSD plate.
- Dilution: Refers to the dilution factor.
- Concentration: Values of concentrations that were used in the standard.
- Signal: Refers to raw electrochemiluminescence (ECL) signal.
- Adjusted signal: Refers to raw electrochemiluminescence (ECL) signal after correcting for background noise, plate effects, or other non‑specific sources of light.
- Mean: Refers to the mean of raw electrochemiluminescence (ECL) signals for repeats.
- Adj. Sig. Mean: Refers to the mean of raw electrochemiluminescence (ECL) signal after correcting for background noise, plate effects, or other non‑specific sources of light for repeats.
- CV: Refers to coefficient of variation. It is a measure of how consistent (or variable) the replicate measurements are.
- % Recover: Refers to how close the measured value is to the expected value.
- % Recovery Mean: Refers to the mean of % Recover for repets
- Calc. Concentration (pg/ml): Refers to calculated concentration of the tested sample from the measurement.
- Calc. Conc. Mean (pg/ml): Refers to calculated mean concentration of tested replicates from the measurement.
- Calc. Conc. CV: Refers to coefficient of variation for the calculated concentrations.
File: Data_Quantification_of_aggregates.prism
Description: Data from quantifications of the co-staining in T22Aβ1-42- and Arctic flies
Code/software
- Statistical analysis: The data were analyzed using GraphPad Software 9.
We utilized Drosophila melanogaster to overexpress Aβ peptides in the fly gut in order to investigate their toxicity and morphological characteristics. Fly lines expressing Aβ were generously provided by D. Crowther (AstraZeneca, Floceleris, Oxbridge Solutions Ltd., London, United Kingdom). Gut barrier integrity was assessed visually by incorporating erioglaucine disodium salt into the fly food. Aβ aggregates were detected using aggregate-binding fluorophores and analyzed with an inverted Zeiss LSM 780 laser scanning confocal microscope (Zeiss, Oberkochen, Germany). Quantification of Aβ levels in the flies was performed using the Meso Scale Discovery (MSD) assay.
