Iron-driven fast decomposition of soil carbon under periodic anoxia
Data files
Apr 21, 2025 version files 1.08 MB
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Dataset_1_Soil_properties_of_non-incubated_soils.csv
3.73 KB
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Dataset_2_Mean_decomposition_rate_and_response_ratios_within_90_days.csv
1.38 KB
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Dataset_3_Instantaneous_CO2_and_CH4_production_rates.csv
33.38 KB
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Dataset_4_Variation_in_alternative_terminal_electron_acceptors_and_their_reductive_products.csv
16.18 KB
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Dataset_5_Variation_in_soil_properties_over_time_under_different_redox_treatments.csv
8.23 KB
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Dataset_6_Variation_in_Fe-bound_OC_after_different_redox_treatments.csv
1.09 KB
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Dataset_7_Random_forest_for_predicting_mean_RRCO2_CH4.csv
4.86 KB
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Dataset_8_Random_forest_for_predicting_Fe-bound_OC_loss.csv
4.34 KB
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Dataset_9_Microbial_community_and_their_categorization_detected_in_each_soil.csv
998.55 KB
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README.md
11.02 KB
Abstract
Soil organic carbon (SOC) decomposition underpins soil-atmosphere carbon exchange and is regulated by climate change-mediated variations in soil redox conditions. Periodic anoxia, commonly occurring following precipitation, soil flooding and erosion events, is assumed to preserve SOC. Yet, water saturation may also increase SOC decomposition relative to unsaturated conditions, and contradictory findings among previous studies remain unexplained. Here, using incubation experiments on 20 soils collected across a 24° latitude gradient in China, we show that 70% of the soils showed higher or similar anoxic decomposition rate of SOC compared to oxic treatment, indicating fast SOC loss under relatively short anoxia. Methane production was far lower than CO2 due to the presence of alternative terminal electron acceptors (TEAs). Variation in alternative TEAs and microbial community shows that fast anoxic decomposition was primarily driven by iron (Fe) reduction, which accounted for up to 90% of anoxic CO2 production. Meanwhile, positive relationships among water-extractable organic carbon (OC), hydrochloric acid-extractable ferrous Fe, relative abundance of Fe-reducing prokaryotes, and SOC decomposition rate suggest the release of readily metabolized substrates following Fe reduction. This release provided substrates for anoxic metabolism and potentially leading to the loss of OC protected by Fe (Fe-bound OC; a slow-cycling OC pool under oxic conditions). Mass balance calculation confirms that Fe-bound OC loss was mostly similar to elevated anoxic SOC decomposition in magnitude, and random forest modeling indicates that soils rich in reducible Fe, SOC, and Fe-reducing prokaryotes most likely experience elevated SOC decomposition under periodic anoxia. Overall, our findings demonstrate that fast anoxic decomposition of SOC is a potentially important pathway that may stimulate SOC loss under climate change-mediated intense hydrologic regimes, particularly for soils rich in reducible Fe and SOC.
We have submitted our data on the following: soil properties (Dataset 1 Soil properties of non-incubated soils.csv), mean decomposition rate (Dataset 2 Mean decomposition rate and response ratios within 90 days.csv), instantaneous decomposition rate (Dataset 3 Instantaneous CO2 and CH4 production rates.csv), alternative TEA variations (Dataset 4 Variation in alternative terminal electron acceptors and their reductive products.csv), soil property variation (Dataset 5 Variation in soil properties over time under different redox treatments.csv), Fe-bound OC variation (Dataset 6 Variation in Fe-bound OC after different redox treatments.csv), random forest for rate response (Dataset 7 Random forest for predicting mean RRCO2+CH4.csv), random forest for Fe-bound OC loss (Dataset 8 Random forest for predicting Fe-bound OC loss.csv), and microbial communities (Dataset_9_Microbial_community and their categorization_detected_in_each_soil.csv).
Descriptions
Dataset 1: Soil properties of non-incubated soils.csv Data
- Soil: Currently valid scientific name
- Site name: full name of each soil
- Vegetation: grassland or forest
- soil type: derived from the Harmonized World Soil Database
- SOC (%): soil organic carbon content in unit of %
- SIC (mg g–1 soil): soil inorganic carbon content (mg) per unit of soil (g)
- pH: soil pH measured by pH meter
- Clay and silt (%): proportion of clay and silt (%)
- Fe-bound OC (mg C g–1 soil): OC content protected by iron (mg) per unit of soil (g)
- Nitrate (mg g–1 soil): nitrate content (mg N) per unit of soil (g)
- MAT (°C): mean annual temperature (°C)
- Maximum temperature (°C): maximum temperature of each site (°C)
- MAP (mm): mean annual precipitation (mm)
- Precipitation of wettest month (mm): precipitation of wettest month (mm)
- PET of wettest month (mm): potential evapo-transpiration of wetted month (mm)
- WEOC (mg C g–1 soil): water-extractable organic carbon content (mg C) per unit of soil (g)
- Spectral slope ratio of WEOM: indicating molecular weight of water-extractable organic matter detected by ultraviolet-visible spectra
- Fed (mg g–1 soil): dithionite-extractable iron content (mg) per unit of soil (g)
- Mnd (mg g–1 soil): dithionite-extractable manganese content (mg) per unit of soil (g)
- Relative abundance of alkyls (%): proportion of alkyls in all compounds detected by pyrolysis-gas chromatography/mass spectrometry
- Relative abundance of lignin (%): proportion of lignin in all compounds detected by pyrolysis-gas chromatography/mass spectrometry
- Relative abundance of lipids (%): proportion of lipids in all compounds detected by pyrolysis-gas chromatography/mass spectrometry
- Relative abundance of aromatics (%): proportion of aromatics in all compounds detected by pyrolysis-gas chromatography/mass spectrometry
- Relative abundance of N-containing compounds (%): proportion of N-containing compounds in all compounds detected by pyrolysis-gas chromatography/mass spectrometry
- Relative abundance of phenols (%): proportion of phenols in all compounds detected by pyrolysis-gas chromatography/mass spectrometry
- Relative abundance of polysaccharides (%): proportion of polysaccharides in all compounds detected by pyrolysis-gas chromatography/mass spectrometry
- Relative abundance of protein (%): proportion of protein in all compounds detected by pyrolysis-gas chromatography/mass spectrometry
- Relative abundance of iron-reducing prokaryotes (%): proportion of iron-reducing prokaryotes in all detected OTU
- Relative abundance of nitrate-reducing prokaryotes (%): proportion of nitrate-reducing prokaryotes in all detected OTU
Dataset 2: Mean decomposition rate and response ratios within 90 days.csv Data
- Soil: Currently valid scientific name
- Treatment: incubation conditions
Oxic: incubation under oxic conditions
Anoxic: incubation under anoxic conditions - Mean CO2 rate within 90 days (μg C g–1 soil day–1): cumulative CO2 production divided by 90 days
- Mean CH4 rate within 90 days (μg C g–1 soil day–1): cumulative CH4 production divided by 90 days
- Response ratio of anoxic-to-oxic CO2+CH4 rate: anoxic CO2+CH4 rate divided by oxic CO2+CH4 rate
Dataset 3: Instantaneous CO2 and CH4 production rates.csv Data
- Soil: Currently valid scientific name
- Treatment: incubation conditions
Oxic: incubation under oxic conditions
Anoxic: incubation under anoxic conditions - Gas: gas type
CO2: carbon dioxide
CH4: methane - Time (day): gas sampling time
- Rate (μg C g–1 soil h–1): gas production rate (μg C) per unit of soil (g) per hour (h)
Dataset 4: Variation in alternative terminal electron acceptors and their reductive products.csv Data
- Site: Currently valid scientific name
- Time (Day): destructive sampling time
- Treatment: incubation conditions
Oxic: incubation under oxic conditions
Anoxic: incubation under anoxic conditions - Type of alternative TEAs or reductive products: alternative TEA name
NO₃⁻: nitrate
Mn(II): reductive products of tetravalent manganese
Fe(III): ferric iron
Fe(II): ferrous iron
SO₄²⁻: sulfate - Contents of Alternative TEAs or reductive products (μmol g–1 soil): content per unit of soil (g)
Dataset 5: Variation in soil properties over time under different redox treatments.csv Data
- Site: Currently valid scientific name
- Treatment: incubation conditions
Oxic: incubation under oxic conditions
Anoxic: incubation under anoxic conditions - Time (Day): destructive sampling time
- pH: soil pH measured by pH meter
- ORP (mV): oxidative reduction potentials of soil (mV)
- WEOC (mg C g–1 soil): water-extractable organic carbon content (mg C) per unit of soil (g)
- SR: spectral slope ratio of WEOM, indicating molecular weight of water-extractable organic matter detected by ultraviolet-visible spectra
- Response ratio of WEOC: WEOC content after anoxic incubation divided by its content after oxic incubation at a specific time in a specific soil
- Response ratio of SR: spectral slope ratio of WEOM after anoxic incubation, divided by its value after oxic incubation at a specific time in specific soil
- Relative abundance of iron-reducing prokaryotes (%): proportion of iron-reducing prokaryotes in all detected OTU
- Relative abundance of nitrate-reducing prokaryotes (%): proportion of nitrate-reducing prokaryotes in all detected OTU
- ΔRelative abundance of iron-reducing prokaryotes (%): Relative abundance of iron-reducing prokaryotes after anoxic incubation minus relative abundance of iron-reducing prokaryotes in non-incubated soils
- ΔRelative abundance of nitrate-reducing prokaryotes (%): Relative abundance of nitrate-reducing prokaryotes after anoxic incubation minus relative abundance of nitrate-reducing prokaryotes in non-incubated soils
Dataset 6: Variation in Fe-bound OC after different redox treatments.csv Data
- Site: Currently valid scientific name
- Treatment: incubation conditions
Oxic: incubation under oxic conditions
Anoxic: incubation under anoxic conditions - Time (day): prolonged incubation for >200 days
- Fe-bound OC (mg g–1 soil): the content of OC protected by iron at the end of incubation
- Fe-bound OC loss (mg g–1 soil): Fe-bound OC content in non-incubated soils minus that after incubation for >200 days
- ΔCumulative CO2+CH4 (mg C g–1 soil): the cumulative CO2 and CH4 production (mg C g−1 soil) estimated over an extended incubation period (> 200 days) under the respective redox conditions. Gas sampling beyond 90 days was reduced to once every 30–40 days due to logistical constraints, and cumulative CO2 + CH4 was estimated from these data to align with Fe-bound OC measurements.
Dataset 7: Random forest for predicting mean RRCO2+CH4.csv Data
- LnRRCO2+CH4: log-transformed response ratio of mean anoxic to oxic CO2+CH4 rate
- Fed (mg g–1 soil): dithionite-extractable iron content (mg) per unit of soil (g)
- Mnd (mg g–1 soil): dithionite-extractable manganese content (mg) per unit of soil (g)
- Nitrate (mg g–1 soil): nitrate content (mg N) per unit of soil (g)
- Sulfate (mg g–1 soil): sulfate content (mg N) per unit of soil (g)
- Fe-bound OC (mg C g–1 soil): OC content protected by iron (mg) per unit of soil (g)
- SOC (%): soil organic carbon content in unit of %
- Clay+Silt (%)): proportion of clay and silt (%)
- pH: soil pH measured by pH meter
- MAT (°C): mean annual temperature (°C)
- MAP (mm): mean annual precipitation (mm)
- Lipids (%): proportion of lipids in all compounds detected by pyrolysis-gas chromatography/mass spectrometry
- Relative abundance of iron-reducing prokaryotes (%): proportion of iron-reducing prokaryotes in all detected OTU
- Relative abundance of nitrate-reducing prokaryotes (%): proportion of nitrate-reducing prokaryotes in all detected OTU
Dataset 8: Random forest for predicting Fe-bound OC loss.csv Data
- Fed (mg g–1 soil): dithionite-extractable iron content (mg) per unit of soil (g)
- Mnd (mg g–1 soil): dithionite-extractable manganese content (mg) per unit of soil (g)
- Nitrate (mg g–1 soil): nitrate content (mg N) per unit of soil (g)
- Sulfate (mg g–1 soil): sulfate content (mg N) per unit of soil (g)
- Fe-bound OC (mg C g–1 soil): OC content protected by iron (mg) per unit of soil (g)
- SOC (%): soil organic carbon content in unit of %
- Clay+Silt (%)): proportion of clay and silt (%)
- pH: soil pH measured by pH meter
- MAT (°C): mean annual temperature (°C)
- MAP (mm): mean annual precipitation (mm)
- RRFe-bound OC loss: equaling Fe-bound OC loss divided by Fe-bound OC in non-incubated soils
- Relative abundance of iron-reducing prokaryotes (%): proportion of iron-reducing prokaryotes in all detected OTU
- Relative abundance of nitrate-reducing prokaryotes (%): proportion of nitrate-reducing prokaryotes in all detected OTU
Dataset 9: Microbial_community and their categorization_detected_in_each_soil.csv Data
- Name in NCBI: soil name in sequencing files saved in NCBI
- Soil: Currently valid scientific name
- Time (days): time of sequencing analysis
- Treatment: incubation conditions
Oxic: incubation under oxic conditions
Anoxic: incubation under anoxic conditions - Replicate: replicate names
A: the first replicate
B: the second replicate
C: the third replicate - Column F to Column CQH: OTU number detected at genus level.
Iron-reducing prokaryotes contain columns F to L
Prokaryotes with both iron-reducing and nitrate-reducing functions contain columns M to N
Nitrate-reducing prokaryotes contain columns O to AC
NA indicates not applicable or not available due to sample depletion.
