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Code from: Inference technique for the synaptic conductances in rhythmically active networks and application to respiratory central pattern generation circuits

Molkov, Yaroslav1; Borgmann, Anke2; Koizumi, Hidehiko2; Hama, Noriyuki3; Zhang, Ruli2; Smith, Jeffrey2

Published Mar 25, 2026 on Dryad. https://doi.org/10.5061/dryad.bcc2fqzrp

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Mar 25, 2026 version files 10.61 MB

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Abstract

Unraveling synaptic interactions between excitatory and inhibitory interneurons within rhythmic neural circuits, such as central pattern generation (CPG) circuits for rhythmic motor behaviors, is critical for deciphering circuit interactions and functional architecture, which is a major problem for understanding how neural circuits operate. Here we present a general method for extracting and separating patterns of inhibitory and excitatory synaptic conductances at high temporal resolution from single neuronal intracellular recordings in rhythmically active networks. These post-synaptic conductances reflect the combined synaptic inputs from the key interacting neuronal populations and can reveal the functional connectome of the active circuits. To illustrate the applicability of our analytic technique, we employ our method to infer the synaptic conductance profiles in identified rhythmically active interneurons within key microcircuits of the mammalian (mature rat) brainstem respiratory CPG and provide a perspective on how our approach can resolve the functional interactions and circuit organization of these interneuron populations. We demonstrate the versatility of our approach, which can be applied to any other rhythmic circuits where conditions allow for neuronal intracellular recordings.