Environment rather than character displacement explains call evolution in glassfrogs
Data files
May 05, 2025 version files 63.86 KB
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CallEvolAnalysis.R
20.79 KB
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DryadEvolution.zip
39.94 KB
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README.md
3.14 KB
Abstract
The Acoustic Adaptation Hypothesis (AAH) and Ecological Character Displacement (ECD) are two potential mechanisms shaping call evolution that can predict opposite trends for the differentiation of signals. Under AAH, signals evolve to minimize environmental degradation and maximize detection against background noise, predicting call homogenization in similar habitats due to environmental constraints on signals. In contrast, ECD predicts greater differences in call traits of closely-related taxa in sympatry because of selection against acoustic interference. We used comparative phylogenetic analyses to test the strength of these two selective mechanisms on the evolution of advertisement calls in glassfrogs, a highly diverse family of neotropical anurans. We found that, overall, acoustic adaptation to the environment may outweigh effects of species interactions. As expected under the AAH, temporal call parameters are correlated with vegetation density, but spectral call parameters had an unexpected inverse correlation with vegetation density, as well as an unexpected correlation with temperature. We detected call convergence among co-occurring species and also across multiple populations from the same species in different glassfrogs communities. Our results indicate that call convergence is common in glassfrogs, likely due to habitat filtering, while character displacement is relatively rare, suggesting that costs of signal similarity among related species may not drive divergent selection in all systems.
Authors:
Angela M. Mendoza-Henao, Kelly R. Zamudio, Juan M. Guayasamin, Moises Escalona, Gabriela Parra-Olea
Dataset Details
DryadEvolution.zip
This archive contains three files, each described below:
1. Callmetrics.csv
Description: Acoustic and environmental variables for glassfrog species.
Variables:
- Species: Scientific name of each species, in the format Genus_species.
- SVL: Snout-Vent Length (mm; body size measurement).
- PeakFreq: Peak call frequency (Hz).
- Bandwidth: Frequency range of call notes (Hz; measured 6 dB below peak frequency).
- MaxNotes: Maximum number of notes per call.
- SyllDur: Syllable duration (ms).
- noterate: Call rate (notes per second; calculated as
(notes - 1) / call duration). - pulserate: Pulse rate (pulses per second; purely tonal calls = 0).
- EVI: Enhanced Vegetation Index (MODIS Land Discipline Group).
- Temperature: Mean temperature of wettest quarter (Bio8; °C).
- Prec: Mean precipitation (mm).
- PC1Temp: Principal Component 1 summarizing temporal climatic variables.
- ResidSVL: Residuals from SVL vs. Peak Frequency regression.
- Genus: Taxonomic genus.
- Pulses: Number of pulses per call.
- Subfamily/Genus/Clade columns: Binary indicators (0/1) for taxonomic subsets (e.g.,
Centroleninae,Hyalinobatrachium,Hyalino17sp).
Missing Data (NA):
NAindicates non-available data, either due to unmeasured variables (e.g., missing acoustic measurements) or absence of applicable values (e.g., pulse rate for non-pulsed calls).
2. FrogsTree.tre
Description: Time-calibrated phylogenetic ultrametric tree (Nexus format) for 100 glassfrog species with molecular and acoustic data.
Details:
- The name of each coincides with those on the Species column in the "Callmetrics.csv" file
- Used for comparative analyses in the study.
- Some branches were pruned in specific analyses (noted in the manuscript).
3. SpeciesxSitesMatrix.csv
Description: Presence-absence matrix of glassfrog species (columns) across their geographic ranges (rows).
Details:
- Values:
1= presence,0= absence. - Purpose: Measures species co-occurrence for community-level analyses.
- Missing Data (
NA): Not applicable (all cells are populated with 0 or 1).
CallEvolAnalysis.R
Description: R script reproducing all analyses and figures from the manuscript.
Usage:
- Requires the three files above (
Callmetrics.csv,FrogsTree.tre,SpeciesxSitesMatrix.csv). - No external files needed; self-contained.
- Refer to manuscript for analysis context.
Sharing/Access Information
Datasets are part of the study published by Mendoza-Henao et al. (Evolution).
Related Publication: Mendoza-Henao, A. M., Zamudio, K. R., Guayasamin, J. M., Escalona, M., & Parra-Olea, G. (2023). Environment rather than character displacement explains call evolution in glassfrogs. Evolution, 77(2), 355-369.
We gathered all available glassfrog calls from sound collections, and we supplemented the data set with contributions from colleagues, call descriptions available in literature, and our own recordings obtained in the field. For each species, we obtained two spectral and four temporal call parameters: peak frequency (frequency at which the highest amplitude peak is found, also known as dominant frequency), frequency bandwidth (the difference between upper and lower frequency bounds of notes, as measured 6 dB below the peak frequency), note duration (length in milliseconds of a note, measured from beginning to end of the note), notes per call, pulse rate (number of pulses in a note minus 1, divided by the length of the note; with this formula, purely tonal calls always have a pulse rate of zero) and note rate (count of notes in a call minus 1, divided by the length of the call).
We obtained georeferenced records to infer the distribution for all glassfrog species included in this study from the database generated by Hutter et al. (2013), which was modified with updated species names and supplemented with recent data. For each record, we extracted the environmental temperature, estimated from the mean temperature of the wettest quarter (CHELSA BIO8, Karger and Zimmermann 2019) as a proxy for the temperature during the rainy season, when glassfrog reproductive activity peaks. For H. fleischmanni lineages, we used the available air temperature registered in the metadata of the recording event. We also extracted vegetation density, taken from the Enhanced Vegetation Index (EVI) proposed by the MODIS Land Discipline Group (Liu and Huete 1995) and derived from aerial assessments of forest canopy for both datasets, for this, we obtained the mean value per cell for 204 layers with monthly data between 2000 and 2017.
- Mendoza-Henao, Angela M; Zamudio, Kelly R; Guayasamin, Juan M et al. (2022). Environment rather than character displacement explains call evolution in glassfrogs. Evolution. https://doi.org/10.1093/evolut/qpac041
