Herbivory dominates the spring diet of American black bears (Ursus americanus) in a wood bison (Bison bison athabascae) neonatal range, suggesting minimal bison consumption
Data files
Mar 16, 2026 version files 218.81 KB
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README.md
8 KB
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Sharp_FOO_Group.csv
147 B
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Sharp_Num_Scat_By_Grid_Type.csv
867 B
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Sharp_plnt_RRA_group.csv
8.19 KB
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Sharp_plnt_RRA_unit2.csv
93.02 KB
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Sharp_RAW_Read_Data.csv
81.78 KB
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Sharp_RRA_Updated.csv
11.07 KB
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Sharp_Scat_Sampling_Effort.csv
175 B
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Sharp_TaxUnit_Codes.csv
1.98 KB
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Sharp_Unit_FOO_Summary_Updated.csv
1.32 KB
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Sharpetal_2025_DataAnalysis.R
12.24 KB
Abstract
Studying an organism's foraging behavior, especially for predator species, provides insight into their ecology, habitat needs, and interspecific relationships. American black bears (Ursus americanus) are generalist omnivores, with a diet primarily composed of vegetation and are known predators for a number of ungulate species, particularly their neonates. In this study, we analyzed the spring diet of black bears occupying the neonatal range of a small, threatened wood bison (Bison bison athabascae) herd in the Ronald Lake area of northeast Alberta to determine the predation risk of neonate bison. To estimate black bear consumption rates of bison we used scat analysis and DNA metabarcoding to describe the spring diet of bears occupying the RLBH’s neonatal range. If black bears occupying the RLBH’s neonatal range are consuming bison, either through predation or scavenging, then we would expect bison DNA to be present in black bear scats. We predicted that the increased availability of neonate bison in the spring would provide bears with greater predation and scavenging opportunities. Conversely, if black bear predation risk is low within the RLBH’s neonatal range, then we would predict that herbaceous plants would dominate black bear diet early in the spring and berries later in the spring and summer. The spring diet of black bears was dominated by herbaceous and fruiting plants. Bison DNA, without visual evidence of animal remains, was found in only 1 of 79 scat samples (1.3%). Our results suggest that consumption rates of bison are low and that predation risk to neonate wood bison, during the RLBH’s occupancy of their neonatal range, from black bears is likely minimal despite the two species’ overlap in space and time.
Dataset DOI: 10.5061/dryad.cc2fqz6hh
Description of the data and file structure
GENERAL INFORMATION
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Dataset title: American black bear (Ursus americanus) spring diet and predation risk of neonate wood bison (Bison bison athabascae)
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Author Information
A. Corresponding Author Contact Information
Name: Molly E. Sharp
Institution: University of Alberta
Email: msharp2@ualberta.ca
B. Principal Investigator 1 Contact Information
Name: Scott E. Nielsen
Institution: University of Alberta
Email: scottn@ualberta.ca
C. Principal Investigator 2 Contact Information
Name: Mark A. Edwards
Institution: University of Alberta, Alberta Environment and Protected Areas
Email: mae@ualberta.ca
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Date of data collection (single date, range, approximate date): June 24, 2023 - July 13, 2023
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Geographic location of data collection: Northeastern Alberta, Canada
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Information about funding sources that supported the collection of the data: Alberta Environment and Protected areas (EPA), Canada Graduate Scholarship - Master's Program (NSERC CGS-M)
Files and variables
DATA & FILE OVERVIEW
This dataset contains read count data from DNA metabarcoding fort an omnivore diet composition analysis completed by Jonah Ventures laboratory (5485 Conestoga Ct #210, Boulder, CO 80301) and black bear scat encounter rates by grid cell (250 m by 250 m) strata relative to an open meadow within our study area. Percent frequency of occurrence (%FOO) was calculated for taxonomic units and functional groups from raw read count data outside of R and are provided in the data files "Sharp_FOO_Group.csv", "Sharp_Unit_FOO_Summary_Updated.csv". Relative read abundance (RRA) was calculated for plants only due to the low %FOO of insects and mammals. File "Sharp_plnt_RRA_group.csv" provides the calculated RRA values for each functional group per scat sample and file "Sharp_plnt_RRA_unit2.csv" provides the RRA values to the taxonomic unit level. Files "Sharp_Num_Scat_By_Grid_Type.csv" and "Sharp_Scat_Sampling_Effort.csv" have scat location data and were used to calculate scat encounter rates (calculation done outside of R). "Sharp_RAW_Read_data.csv" contains the raw read count data for all unique gene sequences identified by DNA metabarcoding conducted by Jonah Ventures Laboratory. "Sharp_TaxUnit_Codes.csv" provides the full taxonomic unit and common name for the shortened taxonomic unit codes used in other data files. All files used in analyses are included and R script for data analysis and figure creation is included.
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File List:
A) Sharp_FOO_Group.csv
B) Sharp_Unit_FOO_Summary_Updated.csv
C) Sharp_RRA_Updated.csv
D) Sharp_TaxUnit_Codes.csv
E) Sharp_Num_Scat_By_Grid_Type.csv
F) Sharp_Scat_Sampling_Effort.csv
G) Sharpetal_2025_DataAnalysis.R
H) Sharp_plnt_RRAgroup.csv
I) Sharp_plnt_RRA_unit2.csv
J) Sharp_RAW_Read_Data.csv
DATA SPECIFIC INFORMATON FOR: Sharp_FOO_Group.csv and Sharp_Unit_FOO_Summary_Updated.csv
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Variable List:
ScatSample - scat sample identifiers
TaxUnit - operational taxonomic unit determined by DNA metabarcoding
TaxGroup - broader functional group assigned to taxonomic units
FOO - frequency of occurrence
%FOO/PercFOO - percent frequency of occurrence calculated as the number of samples a distinct taxonomic unit or functional group was present in, divided by the total number of scat samples, multiplied by 100
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Missing Data Codes: NA
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Specialized formats or other abbreviations used:
HERB - herbaceous plants
FRUIT - fruiting plants
GRAM - graminoids
HORS - horsetails
MAMM - mammals
INS - insects
DATA SPECIFIC INFORMATON FOR: Sharp_Num_Scat_By_Grid_Type. csv
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Variable List:
Cell_ID - grid cell identifier
Cell_Type - grid cell location strata
Bison_Intensity - (variable not used in final analyses) bison telemetry point density in grid cell
Tot_Scat_Found - number of black bear scat encountered
Scat_Found - binary variable, 0 = no scat found, 1 = one or more scat found
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Missing Data Codes: NA
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Specialized formats or other abbreviations used:
Meadow - grid cell composed of at least 50% open meadow
Adjacent - up to 500 m from edge of open meadow
Far - 500 m to 3 km from edge of open meadow
DATA SPECIFIC INFORMATON FOR: Sharp_Scat_Sampling_Effort.csv
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Variable List:
GT - game trail or transect survey
cell_type - grid cell location strata
km_sampled - total kilometers surveyed for survey and grid cell type
num_scat - number of black bear scat encountered for survey and grid cell type
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Missing Data Codes: NA
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Specialized formats or other abbreviations used:
Meadow - grid cell composed of at least 50% open meadow
Adjacent - up to 500 m from edge of open meadow
Far - 500 m to 3 km from edge of open meadow
DATA SPECIFIC INFORMATION FOR: Sharp_plnt_RRA_group.csv
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Variable List:
ScatSample - scat sample identifiers
TaxGroup - broader functional group assigned to taxonomic units
NumReads - number of DNA metabarcoding reads
RRA - relative read abundance calculated as the read count of a particular taxonomic unit or functional group in a scat sample divided by the total number of reads across all taxonomic units for that specific sample, multiplied by 100
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Missing Data Codes: NA
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Specialized formats or other abbreviations used:
HERB - herbaceous plants
FRUIT - fruiting plants
GRAM - graminoids
HORS - horsetails
DATA SPECIFIC INFORMATION FOR: Sharp_plnt_RRA_unit2.csv
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Variable List:
ScatSample - scat sample identifiers
TaxUnit - operational taxonomic unit determined by DNA metabarcoding
TaxGroup - broader functional group assigned to taxonomic units
NumReads - number of DNA metabarcoding reads
RRA - relative read abundance calculated as the read count of a particular taxonomic unit or functional group in a scat sample divided by the total number of reads across all taxonomic units for that specific sample, multiplied by 100
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Missing Data Codes: NA
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Specialized formats or other abbreviations used:
HERB - herbaceous plants
FRUIT - fruiting plants
GRAM - graminoids
HORS - horsetails
DATA SPECIFIC INFORMATION FOR: Sharp_RAW_Read_Data.csv
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Variable List:
TestId - primer used for DNA metabarcoding (trnL for plants, 12sVert for vertebrates, ArthCOI for arthropods)
Phylum, Class, Order, Family, Genus, Species - taxonomy of species that ESVId refers to
Common - common name of species that ESVId refers to
P17-S6 to S22-S3 - scat sample ID
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Missing Data Codes: NA
DATA SPECIFIC INFORMATON FOR: Sharp_TaxUnit_Codes.csv
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Variable List:
TaxCode - TaxUnit code used in other data files
Taxonomic Unit - lowest taxonomic ranking that DNA metabarcoding identified ESV (unique gene sequence) to
Common - common name for taxonomic unit
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Missing Data Codes: NA
Code/software
All statistical analyses were conducted using R v4.3.0 statistical software (R Core Team, 2021) and all graphs were created in R (v4.3.0) statistical software using the package "ggplot2". The data file Sharpetal_2025_DataAnalysis. R contains R script for all analyses and figure creation and lists all R packages used.
List of R packages:
dplyr
ggplot2
tidyverse
ggstatsplot
Access information
Other publicly accessible locations of the data:
- N/A
Data was derived from the following sources:
- N/A
