Remote automated delivery of mechanical stimuli coupled to brain recordings in behaving mice
Data files
Oct 22, 2025 version files 257.27 GB
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2nd_Cohort_Carragenan.zip
18.80 GB
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500fps.zip
3.18 GB
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August_Remote_Experiments.zip
38.74 GB
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Habituation_Experiment.zip
18.80 GB
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Inscopix_Experiments_(3).zip
142.56 GB
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October_Height_Regression.zip
34.96 GB
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Open_Field-_July__24.zip
237.03 MB
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README.md
3.20 KB
Abstract
The canonical framework for testing pain and mechanical sensitivity in rodents is manual delivery of stimuli to the paw. However, this approach is time consuming, produces variability in results, requires significant training, and is ergonomically unfavorable to the experimenter. To circumvent limitations in manual delivery of stimuli, we have created a device called the ARM (Automated Reproducible Mechano-stimulator). Built using a series of linear stages, cameras, and stimulus holders, the ARM is more accurate at hitting the desired target, delivers stimuli faster, and decreases variability in delivery of von Frey hair filaments. We demonstrate that the ARM can be combined with traditional measurements of pain behavior and automated machine-learning based pipelines. Importantly, the ARM enables remote testing of mice with experimenters outside the testing room. Using remote testing, we found that mice habituated more quickly when an experimenter was not present and experimenter presence leads to significant sex-dependent differences in paw withdrawal and pain associated behaviors. Lastly, to demonstrate the utility of the ARM for neural circuit dissection of pain mechanisms, we combined the ARM with cellular-resolved microendoscopy in the amygdala, linking stimulus, behavior, and brain activity of amygdala neurons that encode negative pain states. Taken together, the ARM improves speed, accuracy, and robustness of mechanical pain assays and can be combined with automated pain detection systems and brain recordings to map central control of pain.
Dataset DOI: 10.5061/dryad.cnp5hqcj7
Description of the data and file structure
Files and variables
Note: For further information on data analysis, rationale, and methods, see Burdge et al., 2025, ELife.
File: 2nd_Cohort_Carragenan.zip
Description: Video data for PAWS Carrageenan Experiments Burdge et al., 2025 Figure 3D. 2000 fps video data for baseline and carrageenan mice. Videos labeled based on timepoint, paw stimulate, stimulus, cage number, and mouse number within the cage. Matching metadata files included.
File: 500fps.zip
Description: Video data for 500 fps PAWS comparison Burdge et al., 2025 Supplementary Figure 3B-E. 500 fps video data for baseline and carrageenan mice. Videos labeled with cb for cotton swab, all others are pinprick.
File: Open_Field-_July__24.zip
Description: Video data for open field experiments, Burdge et al., 2025 Supplementary Figure 1D-G. Open field data recorded for stress assay. Videos labeled based on date and order, with matching anymaze tracking included.
File: Habituation_Experiment.zip
Description: Video data for Habituation experiments, Burdge et al., 2025, Figure 4 B-C. Day, cage, and order included in name.
File: August_Remote_Experiments.zip
Description: Video data for stimulus delivery experiments, Burdge et al., 2025, Figure 4 E-J. 2000 fps video data for male and female mice. Videos labeled based on mouse sex, experimenter sex, cage number, stimulus type, and mouse number within the cage in that order. Matching metadata files included.
File: October_Height_Regression.zip
Description: Stimulus Intensity video data regression for Burdge et al., 2025, Figure 5 and Supplementary Figure 5. 2000 fps video data for male and female mice. Videos labeled based on stimulus intensity (H#), the day the stimulus occurred, sex, cage number, and mouse number within the cage. Matching metadata files included.
File: Inscopix_Experiments_(3).zip
Description: Video data and BLA brain recordings for Burdge et al., 2025, Figure 6 and Supplementary Figure 6. Files are labeled based on the mouse (C#), stimulus type used, and date recorded. ISXD holds BLA recordings, matching the GPIO files hold data on stimulus timing within those recordings. Inscopix Behavior folders labeled with date recorded hold 2000 fps and 500 fps video data matching these recordings and GPIO. Videos labeled based on mouse, stimulus, and stimulus number. Matching metadata files included.
Code/software
Programs used for analysis: Photron FastCam Viewer (video and CiHX files), PAWS, Inscopix Data Processing, ANY-maze (.szk). GPIO and ISXD files can also be opened and analyzed using the open source CIAtah (pronounced cheetah; formerly calciumImagingAnalysis). The package and related tutorials can be found at https://github.com/bahanonu/ciatah pain assessment at withdrawal speeds(PAWS) source: https://osimon81.github.io/PAWS/.
