Data from: Wound characteristics after disbudding: Part I and part II
Data files
Aug 04, 2025 version files 5.66 MB
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BiweeklyMeasures.xlsx
551.06 KB
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PartI_BiweeklyAnalysis.pdf
1.85 MB
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PartI_BiweeklyAnalysis.Rmd
49.66 KB
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PartI_WoundAnalysis.pdf
695.58 KB
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PartI_WoundAnalysis.Rmd
39.97 KB
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PartII_BiweeklyAnalysis.pdf
1.14 MB
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PartII_BiweeklyAnalysis.Rmd
43.97 KB
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PartII_WoundAnalysis.pdf
418.60 KB
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PartII_WoundAnalysis.Rmd
23.37 KB
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PasteRubbing.xlsx
43.93 KB
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README.md
10.82 KB
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WoundHealing.xlsx
791.66 KB
Abstract
Part I: Disbudding is a common painful procedure in dairy calves. Farms vary in method (hot iron or paste), whether horn bud hair is shaved, or the quantity of paste applied, for example. Yet, little research compares the effects of differing paste applications. Our objective was to assess the effects of dose and shaving horn bud hair on caustic paste disbudding outcomes including disturbance from rubbing, wound size, sensitivity, healing time, horn regrowth, and the need for removal with a 2nd procedure. Female Holstein calves were assigned to 1 of 4 caustic paste treatments (n = 24-25/treatment): 0.2 or 0.3 mL on either shaved or unshaved horn buds, respectively (0.2 Unshaved, 0.2 Shaved, 0.3 Unshaved, 0.3 Shaved). Before disbudding at 3 d of age, calves received a local block and systemic pain relief. Wound tissues and regrowth were scored 1-2x/wk until fully healed. Wound depth, diameter, and mechanical nociceptive thresholds (MNT) to evaluate sensitivity were measured approximately 4, 14, 28, 42, 56, and 70 d after disbudding. Calves with shaved horn buds were more likely to disturb their paste by rubbing it on themselves or their housing up to 4 h after application. This risk was lowest with 0.2 Unshaved (12%) and highest with 0.2 Shaved and 0.3 Shaved (both 58%). Rubbing, which may result from irritation when the local anesthetic wears off, had minimal effects on wound outcomes. Wound depth initially increased by ~1.5 mm for all treatments in the 6 wk after paste application. Similar sensitivity was observed for all wounds for 42 d, while at 56 and 70 d, 0.2 Shaved calves were less responsive than 0.3 Shaved. Wound diameter was affected by dose and shaving with 0.2 Unshaved wounds being an average 6 mm smaller than those from 0.3 Shaved. On average, wounds from 4 methods of applying caustic paste took 14.3 to 18.0 wk to re-epithelialize and 15.9 to 19.4 wk to fully heal, with 0.2 Unshaved reaching these stages the fastest and 0.3 Shaved the slowest. Applying 0.2 Unshaved led to smaller, faster healing wounds, but also resulted in the highest rates of horn regrowth (21% regrowth present; 8% required 2nd procedure), indicating this approach to paste disbudding was the least effective option tested. At the other extreme, 0.3 Shaved caused the most rubbing initially, and long term, created wider, slower healing wounds, beyond what is needed for a successful procedure. Two treatments, 0.2 Shaved and 0.3 Unshaved created comparable, long-lasting damage in our population of limit fed calves. While these 2 approaches were the best of the 4 compared, they take on average 4.4 mo to heal, raising concerns about the ethical implications of using chemicals to destroy horn growing tissue. Overall, the dose of disbudding paste and presence of hair affected calf responses, the wound profile, and efficacy of the procedure.
Part II: Disbudding is a common painful procedure. Farms vary in method (cautery or paste), whether the horn bud hair is shaved, or the quantity of paste applied, for example. Yet, little research compares the long-term effects among these methods. Our objective was to describe wound healing, sensitivity, and horn regrowth following cautery and 2 methods of caustic paste disbudding. Female Holstein calves were assigned to 1 of 4 treatments (n = 25/treatment): non-disbudded sham (Control), 12.7 mm hot iron leaving the bud in (Hot iron), 0.2 mL paste on shaved horn buds (0.2 Shaved), or 0.3 mL paste on unshaved horn buds (0.3 Unshaved). Before disbudding, at 3 d of age, calves received a local block and systemic pain relief. Wounds were scored 1-2x/wk until they were fully healed and only a thin scar line remained. Nine tissue types were scored, including epithelium, when the wounds were covered in a new layer of skin. Wound depth, diameter and mechanical nociceptive threshold (MNT) measures to evaluate sensitivity were collected 4, 14, 28, and 42 d after disbudding. Compared to Controls, all disbudded calves exhibited lower MNT values in the first 42 d, while sensitivity was similar among disbudding treatments. Wound diameter was similar 4 d after disbudding. In the following weeks wounds from Hot iron contracted while those from paste first increased in size. Wound depth in the weeks after disbudding was smaller for Hot-iron disbudding than paste. Paste wounds took 16 and 17-18 wk to epithelialize and heal, respectively and this was at least twice as long as Hot Iron, where these stages were reached after 7 and 10 wk, on average. Horn regrowth was present in 4% of buds from both Hot iron and 0.3 Unshaved, and 8% from 0.2 Shaved. Applying 0.2 Shaved or 0.3 Unshaved paste created similar wound size, sensitivity, healing, and regrowth, confirming the likeness of these ways of chemically destroying horn growing tissue. Taken together, all wounds were more sensitive than un-damaged tissue for at least 42 d, and paste wounds were deeper and increased in size while Hot-iron wounds contracted. Paste wounds also took at least twice as long to re-epithelize and fully heal compared to those from cautery disbudding. These results highlight the importance of understanding methodological differences associated with routine management procedures and suggest cautery disbudding is better for calf welfare than caustic paste.
Data were collected from 149 Holstein heifers. Calves were assigned to 1 of 6 treatments (n = 24-25/treatment): 1) hot-iron disbudding with a 12.7 mm tip leaving the bud in, 2) 0.2 mL paste on unshaved horn buds 3) 0.2 mL paste on shaved horn buds, 4) 0.3 mL paste on unshaved horn buds, 5) 0.3 mL paste on shaved horn buds, 6) non-disbudded control group. Treatments were assigned in blocks of 6 using a random number generator without replacement (represented as "Block" in the Excel files). On d 3 of life, pain relief was provided, disbudding was carried out according to the calf's treatment or a sham procedure was performed. For paste disbudded calves, removal of the paste by rubbing on the hutch or another body part was scored at 1 and 4 h after application as "Rubbing". When applicable, disbudding wounds were scored for the presence/absence of 9 tissue types: fresh paste, attached necrotic, burns outside of the hot-iron ring, detaching necrotic, exudate, granulation, crust, epithelium, and fully healed. Wounds were scored 1-2/wk until they were scored as fully healed 2 consecutive times. The presence of horn regrowth was monitored through visual inspection and palpation for approximately 7 months. If regrowth was extensive, as second procedure to remove the regrowth occured. This lead to 2 categories: horn regrowth present, and a subset where regrowth was removed. At 4, 14, 28, 42, 56, and 70 d after disbudding, wound sensitivity (mechanical nociceptive thresholds) and size (diameter and depth) were collected. Non-disbudded controls were removed from the experiment after the 42 d observation. Throughout the RMarkdown files (RMDs), paste treatments will have their treatment name updated to remove the word "paste" for creating final publication figures.
Data from all treatments are presented in the respective Excel file. For publication, data are broken into 2 parts. Part 1 evaluates differences among the 4 paste treatments to understand the effects of dose and shaving on the outcome variables of interest. Part 2 evaluates differences among multiple disbudding methods by comparing 2 of the paste treatments that were similar to each other, with the hot iron and control treatments for wound healing, size, and MNT.
Description of the data and file structure
- BiweeklyMeasures.xlsx; This file presents the measures that were collected biweekly beginning 4 d after disbudding. Calf number shows the individual ID. Date shows when a row of data were collected. "DaysDisbudded" calculates the number of days between the procedure "DateDisbudded" and the current data collection day. "Observation" shows which measure in the consecutive order is represented for a calf, while "ObservationDays" shows the consistent number of disbudding days that observation equates to across calves. "DOB" represents the date of birth. Treatment describes the combined approach for how the calf was disbudded, while "shaving" and "dose" specify either shaved/unshaved horn buds or 0.2/0.3 mL paste from the treatment. "Tool" specifies if the hot iron, paste, or control is used for the procedure. "MNT operator" is the researcher who collected the MNT data for that calf on a given day. The "MNT" column shows the N of force that was applied with an algometer before a calf showed a behavioral response. "Attempts" are the number of times the algometer was applied before a successful reading (no disruption) occurred. If a hot iron disbudded calf had a burn outside of the horn bud area that was expected to interfere with the typical MNT testing site, the algometer was moved slightly to the side, which is represented by "MovedForBurnOutsideRing". Wound diameter and depth are both represented in mm. The tissue column shows all of the tissue types that were scored on that day, which is represented in 0/1 format in columns W-AE. Side indicates left or right horn bud while the location indicates if the MNT measure was collected in the caudal or lateral position around the respective bud/wound. "Rate"" indicates the N of force/sec in which the amount of pressure applied to the algometer increased. This was calculated using ("StopMNT" - "StartMNT"/"StopTime" - "StartTime"). "AnyDistrubanceAnytime" shows a 0 if the calf did not disturb the paste on the respective horn bud in the first 4 h after application, while a 1 designates some level of paste rubbing occurred. Regrowth and Regrowth removal represent if there was any amount of horn regrowth (1) or removal of that regrowth (1) during the experiment or not (0). "N/A" represents missing data.
- WoundHealing.xlsx; This file presents the wound scores that were collected 1-2 x/wk from the day calves were disbudded until they were scored as fully healed at least 2 consecutive times. Calf number shows the individual ID. "Date" shows when a row of data were collected. "DaysDisbudded" calculates the number of days between when the procedure "DateDisbudded" and the current data collection day. Side indicates if the left or right horn bud is being represented. "DOB" is the date of birth for a calf. Treatment describes the combined approach for how the calf was disbudded, while "shaving" and "dose" specify either shaved/unshaved horn buds or 0.2/0.3 mL paste from the treatment. The tissue column shows all of the tissue types that were scored on that day, which is represented in 0/1 format in columns L-U. Regrowth and Regrowth removal represent if there was any amount of horn regrowth (1) or removal of that regrowth (1) during the experiment or not (0). "AnyDistrubanceAnytime" shows a 0 if the calf did not disturb the paste on the respective horn bud in the first 4 h after application, while a 1 designates some level of paste rubbing occurred. The "Latency_Epi" shows the number of days it took for a horn bud to be scored as Epithelium for the first time. The "Latency_Heal" shows the number of days it took for a horn bud to be scored as Fully healed for the first time. "N/A" represents missing data.
- PasteRubbing.xlsx; This file presents data on if each horn bud of a calf had their paste rubbed off or not. Rubbing was scored for paste disbudding treatments only at 2 and 4 h after the application. Each calf was observed at those 2 time points, "Observation" inidcates which time point is present in that row. At each time, 4 categories of rubbing were scored as a 0 or 1: "ExtendsBeyondCircle", "SmallDisturbance", "LargeDisturbance","HutchOrBody". An additional column indicates "SmallORLarge" if a horn bud had either of these disturbances at that time point. "AnyDisturbanceAnytime" shows a 1 if calves had any of the 4 disturbance categories at any of the times they were observed. "Date" shows the calendar day when data were collected, while "TimeObserved" specifies the exact time of the observation. "TimeDisbudded" shows when paste application was completed on the same date that rubbing was scored. Shaving, Dose, Treatment, Calf, Side, and DOB all show the same data presented in other files for each individual. The collapsed disturbance category was incorporated into the other Excel sheets, but the complete data set is presented here for any readers who may be interested. Regrowth and Regrowth removal represent if there was any amount of horn regrowth (1) or removal of that regrowth (1) during the experiment or not (0).
- PartI_BiweeklyAnalysis.Rmd; This RMarkdown file uses the Biweekly Measures.xlsx file listed above to build and validate models to describe the effects of treatment on wound MNT, diameter, depth, and the effects of paste rubbing on these 3 variables. This file produces the model results and figures used in the corresponding paper (Part I). Rmd files can be downloaded and run in R. This file is annotated.
- PartI_BiweeklyAnalysis.pdf; This file is the PDF output of the corresponding RMarkdown file, and includes the code and output previews. This file is annotated.
- PartII_BiweeklyAnalysis.Rmd; This RMarkdown file uses the Biweekly Measures.xlsx file listed above to build and validate models to describe the effects of treatment on wound MNT, diameter, depth, and the effects of paste rubbing on these 3 variables. This file produces the model results and figures used in the corresponding paper (Part II). Rmd files can be downloaded and run in R. This file is annotated.
- PartII_BiweeklyAnalysis.pdf; This file is the PDF output of the corresponding RMarkdown file, and includes the code and output previews. This file is annotated.
- PartI_WoundAnalysis.Rmd; This RMarkdown file uses the Wound Healing.xlsx file listed above to build and validate models to describe the effects of treatment on latency to re-epithelial and fully heal, and the effects of paste rubbing on healing time. This file produces the model results and figures used in the corresponding paper (Part I). Rmd files can be downloaded and run in R. This file is annotated.
- PartI_WoundAnalysis.pdf; This file is the PDF output of the corresponding RMarkdown file, and includes the code and output previews. This file is annotated.
- PartII_WoundAnalysis.Rmd; This RMarkdown file uses the Wound Healing.xlsx file listed above to build and validate models to describe the effects of treatment on latency to re-epithelial and fully heal, and the effects of paste rubbing on healing time. This file produces the model results and figures used in the corresponding paper (Part II). Rmd files can be downloaded and run in R. This file is annotated.
- PartII_WoundAnalysis.pdf; This file is the PDF output of the corresponding RMarkdown file, and includes the code and output previews. This file is annotated.
- Model_Outputs_Part_1.xlsx; This file presents the raw summary, model predicted data, model outputs and test statistics, means, SE, and 95% CI for all variables testing in the part I manuscript. Each tab represents a different model.
- Model_Outputs_Part_2.xlsx; This file presents the raw summary, model predicted data, model outputs and test statistics, means, SE, and 95% CI for all variables testing in the part I manuscript. Each tab represents a different model.
- Supplemental_Figures.pdf; This file presents supplemental figures (Supplemental Figure S1-S11) with examples of secondary injuries from caustic paste, a large burn from hot iron disbudding, and hair within the damage tissue described throughout the manuscripts.
Code/Software
All analyses were run in R using RStudio. Software versions, including those for all packages used, are included in PartI_BiweeklyAnalysis.Rmd, PartII_BiweeklyAnalysis.Rmd, PartI_WoundAnalysis.Rmd, PartII_WoundAnalysis.Rmd, and the associated PDF exports.
The methodological details are described in the two associated publications.
