Data from: Hidden in silver cloud peak—a lithophilous species Primulina cucphuongensis (Gesneriaceae) from Cuc Phuong National Park, northern Vietnam

Data files

Apr 06, 2026 version files 405.93 KB

Primulina_202S_ITStrnLF.fasta

388.33 KB
README.md

17.60 KB

Abstract

A new species of Primulina (Gesneriaceae) from Cuc Phuong National Park, northern Vietnam, is described based on morphological and molecular evidence. Primulina cucphuongensis is distinguished from the other Primulina species by its unique combination of morphological characters, including a dark green leaf blade with densely white puberulous hairs at the margin, violet corolla, and peduncle and pedicel with deep red puberulous hairs and trichomes, as well as its distinct phylogenetic position.

https://doi.org/10.5061/dryad.dfn2z35bp

Description of the data and file structure

The sampled taxa included 200 Primulina species and two outgroups, Petrocodon dealbatus Hance and Petrocodon hancei (Hemsl.) Mich.Möller & A.Weber. GenBank accession numbers, including the two newly acquired sequences, are listed in Appendix. Two DNA regions were aligned separately using MAFFT (v.7.490, Katoh and Standley 2013) and were then concatenated.

Files and variables

File: Primulina_202S_ITStrnLF.fasta

Description: GenBank accession numbers, including the two newly acquired sequences, are listed in the Appendix. The fasta file can be opened with any text editor and biological sequence alignment editor, such as BioEdit, MEGA, and Geneious.

format datatype=dna missing=? gap=-;

Appendix:

GenBank accession numbers for species in the phylogenetic analysis. The species name is followed by NCBI accession numbers (nrITS and trnT-F) and country of origin.

Outgroup: *Petrocodon dealbatus *Hance, KY394845, KF498254, China. Petrocodon hancei (Hemsl.) Mich.Möller & A.Weber, KY394846, KF498253, China.

Ingroup: Primulinaalbicalyx B.Pan & Li H.Yang, KY395016, KY393613, China. Primulina alutacea F.Wen, B.Pan & B.M.Wang, KY394847, KY393441, China. Primulina argentea Xin Hong, F.Wen & S.B.Zhou, KY394848, KY393442, China. Primulina baishouensis (Y.G.Wei, H.Q.Wen & S.H.Zhong) Yin Z.Wang, KY394849, KY393443, China. Primulina balansae (Drake) Mich.Möller & A.Weber, MK747141, MK746274, Vietnam. Primulina beiliuensis B.Pan & S.X.Huang, KY394850, KY393444, China. Primulinabeiliuensis var. fimbribracteata F.Wen & B.D.Lai, KY394851, Y393445, China. Primulinabicolor (W.T.Wang) Mich.Möller & A.Weber, KY394852, KF498242, China. Primulinabipinnatifida (W.T.Wang) Yin Z.Wang & J.M.Li, KY394853, KY393447, China. Primulinabobaiensis Q.K.Li, Qiang Zhang & Wen L.Li, KY394854, KY393448, China. Primulinabogneriana (B.L.Burtt) Mich.Möller & A.Weber, MK747166, MK746225, Vietnam. Primulinabrachytricha (W.T.Wang & D.Y.Chen) R.B.Mao & Yin Z.Wang, KY394856, KF498155, China. Primulinabrachytricha var. magnibracteata (W.T.Wang & D.Y.Chen) Mich.Möller & A.Weber, MK369979.1, MK369994, China. Primulinabrassicoides (W.T.Wang) Mich.Möller & A.Weber, MK747165, MK746226, China. Primulinabrunnea (W.T.Wang) Mich.Möller & A.Weber, MK747142, MK746275, Vietnam. Primulinabullata S.N.Lu & F.Wen, KY394857, KF498184, China. Primulinacangwuensis Xin Hong & F.Wen, MK747103, MK746289, China. Primulinacardaminifolia Yan Liu & W.B.Xu, MK747131, MK746255, China. Primulinacarinata Y.G.Wei, F.Wen & H.Z.Lü, KY394858, KY393452, China. Primulinacarnosifolia (C.Y.Wu ex H.W.Li) Yin Z.Wang, MK747124, MK746268, China. Primulinacataractarum X.L.Yu & A.Liu, MW900263.1, MW960358, China. Primulinachingipengii W.B.Xu & K.F.Chung, MH032852, MH032843, China. Primulinachizhouensis Xin Hong, S.B.Zhou & F.Wen, KY394860, KY393454, China. Primulinacolaniae (Pellegr.) Mich.Möller & A.Weber, MK747167, MK746224, Vietnam. Primulinaconfertiflora (W.T.Wang) Mich.Möller & A.Weber, KC190195, MK746253, China. Primulinacordata Mich.Möller & A.Weber, KY394862, MZ675549, China. Primulinacordifolia (D.Fang & W.T.Wang) Yin Z.Wang, KY394863, KY393457, China. Primulinacordistigma F.Wen, B.D.Lai & B.M.Wang, MK747118, MK746251, China. Primulinacrassirhizoma F.Wen, Bo Zhao & Xin Hong, KY394864, KY393458, China. Primulinacrassituba (W.T.Wang) Mich.Möller & A.Weber, MK747147, MK746230, China. Primulinacruciformis (Chun) Mich.Möller & A.Weber, KY394986, KF498221, China. Primulina cucphuongensis Hao C.Hsu, T.V.Do & K.F.Chung, PQ466577, PQ456100, Vietnam. Primulinacurvituba B.Pan, L.H.Yang & M.Kang, MK747137, MK746242. Primulinadanxiaensis (W.B.Liao, S.S.Lin & R.J.Shen) W.B.Liao & K.F.Chung, KY394866, KF498157, China. Primulinadavidioides F.Wen & Xin Hong, KY394999, KY393629, China. Primulinadebaoensis N.Jiang & Hong Li, KY394868, KY393462, China. Primulinadepressa (Hook.f.) Mich.Möller & A.Weber, KY394869, KF498256, China. Primulinadichorantha F.Wen, Y.G.Wei & S.B.Zhou, MK369971, MK369986.1, China. Primulinadiffusa Xin Hong, F.Wen & S.B.Zhou, KY394871, KY393465, China. Primulinadongguanica F.Wen, Y.G.Wei & R.Q.Luo, KY394872, KY393466, China. Primulinadrakei (B.L.Burtt) Mich.Möller & A.Weber, KY394874, KY393468, Vietnam. Primulinadryas (Dunn) Mich.Möller & A.Weber, KY394875, KY393469, China. Primulinaduanensis F.Wen & S.L.Huang, KY394877, KY393471, China. Primulinaeburnea (Hance) Yin Z.Wang, KJ028196, KJ028199, China. Primulinaeffusa F.Wen & B.Pan, MK369976, MK369991, China. Primulinafengkaiensis Z.L.Ning & M.Kang, KY394881, KY393475, China. Primulinafengshanensis F.Wen & Yue Wang, KY394882, KY393476, China. Primulinafimbrisepala (Hand.-Mazz.) Yin Z.Wang, KY394883, MZ675550, China. Primulinafimbrisepala var. mollis (W.T.Wang) Mich.Möller & A.Weber, KY394884, KY393478, China. Primulinaflavimaculata (W.T.Wang) Mich.Möller & A.Weber, KY394885, KY393479, China. Primulinafloribunda (W.T.Wang) Mich.Möller & A.Weber, KY394886, KY393480, China. Primulinafordii (Hemsl.) Yin Z.Wang, MK747129, MK746288, China. Primulinafordii var. dolichotricha (W.T.Wang) Mich.Möller & A.Weber, MK747125, MK746247, China. Primulinagemella (D.Wood) Yin Z.Wang, MK747146, MK746254, Vietnam. Primulinagigantea F.Wen, B.Pan & W.H.Luo, KY394984, KY393615, China. Primulinaglabrescens (W.T.Wang & D.Y.Chen) Mich.Möller & A.Weber, MK747132, MK746278, China. Primulinaglandaceistriata X.X.Zhu, F.Wen & H.Sun, MK747114, MK746256, China. Primulinaglandulosa (D.Fang, L.Zeng & D.H.Qin) Yin Z.Wang, KY394887, KF498201, China. Primulinagongchengensis Y.S.Huang & Yan Liu, KY394889, KY393483, China. Primulinagracilipes X.L.Yu & A.Liu, MZ571199.1, OM112303, China. Primulinagrandibracteata (J.M.Li & Mich.Möller) Mich.Möller & A.Weber, MK747121, MK746266, China. Primulinaguarouba F.Wen and W.C.Chou, OQ361390.1, OQ361653, China. Primulinagueilinensis (W.T.Wang) Yin Z.Wang & Yan Liu, KY394967, KF498178, China. Primulinaguigangensis L.Wu & Qiang Zhang, KY394892, KY393486, China. Primulinaguihaiensis (Y.G.Wei, B.Pan & W.X.Tang) Mich.Möller & A.Weber, KY394893, KF498191, China. Primulinaguizhongensis Bo Zhao, B.Pan & F.Wen, KY394894, KY393488, China. Primulinahalongensis (Kiew & T.H.Nguyên) Mich.Möller & A.Weber, MK747145, MK746259, Vietnam. Primulinahedyotidea (Chun) Yin Z.Wang, KY394897, KF498198, China. Primulinaheterochroa F.Wen & B.D.Lai, KY394898, KY393492, China. Primulinaheterotricha (Merr.) Y.Dong & Yin Z.Wang, KY394899, KF498218, China. Primulinahezhouensis (W.H.Wu & W.B.Xu) W.B.Xu & K.F.Chung, JQ713831, MZ675551, China. Primulinahiepii (Kiew) Mich.Möller & A.Weber, MK747144, MK746223, Vietnam. Primulinahochiensis (C.C.Huang & X.X.Chen) Mich.Möller & A.Weber, KY394900, KF498180, China. Primulinahochiensis var. rosulata F.Wen & Y.G.Wei, MH343970, KU528884, China. Primulinahuaijiensis Z.L.Ning & Jing Wang, KF498127, KF498159, China. Primulinahuangii F.Wen & Z.B.Xin, MK747138, MK625697, China. Primulinahunanensis K.M.Liu & X.Z.Cai, MK747152, MK746270, China. Primulinajianghuaensis K.M.Liu & X.Z.Cai, MK747102, MK746271, China. Primulinajiangyongensis X.L.Yu & Ming Li, KY394902, KY393496, China. Primulinajingxiensis (Yan Liu, W.B.Xu & H.S.Gao) W.B.Xu & K.F.Chung, KY394903, KY393497, China. Primulinajiulianshanensis F.Wen & G.L.Xu, OP243287.1, OP243283, China. Primulinajiuwanshanica (W.T.Wang) Yin Z.Wang, MK747116, MK746260, China. Primulinajuliae (Hance) Mich.Möller & A.Weber, KY394905, KF498228, China. Primulinalangshanica (W.T.Wang) Yin Z.Wang, KY394907, KF498232, China. Primulinalatinervis (W.T.Wang) Mich.Möller & A.Weber, KY394908, KF498255, China. Primulinalaxiflora (W.T.Wang) Yin Z.Wang, KY394909, KF498192, China. Primulinalechangensis Xin Hong, F.Wen & S.B.Zhou, KY394910, KY393504, China. Primulinaleeii (F.Wen, Yue Wang & Q.X.Zhang) Mich.Möller & A.Weber, KY394911, KY393505, China. Primulinaleiophylla (W.T.Wang) Yin Z.Wang, KY394912, KF498185, China. Primulinalepingensis Z.L.Ning & M.Kang, KY394913, KY393507, China. Primulinaleprosa (YanLiu & W.B.Xu) W.B.Xu & K.F.Chung, KY394914, KF498195, China. Primulinaliboensis (W.T.Wang & D.Y.Chen) Mich.Möller & A.Weber, KY394917, KY393511, China. Primulinaliguliformis (W.T.Wang) Mich.Möller & A.Weber, KY394918, KF498177, China. Primulinalijiangensis (B.Pan & W.B.Xu) W.B.Xu & K.F.Chung, KY394919, KY393513, China. Primulinalinearicalyx F.Wen, B.D.Lai & Y.G.Wei, KY394920, KF498207, China. Primulinalinearifolia (W.T.Wang) Yin Z.Wang, KY394921, KY393515, China. Primulinalingchuanensis (Yan Liu & Y.G.Wei) Mich.Möller & A.Weber, KY394922, KY393516, China. Primulinalinglingensis (W.T.Wang) Mich.Möller & A.Weber, KY394923, KY393517, China. Primulinalinglingensis var. fragrans F.Wen, Y.Z.Ge & B.Pan, MK747157, MK746285, China. Primulinaliujiangensis (D.Fang & D.H.Qin) Yan Liu, KY394924, KY393518, China. Primulinaliuyanii sp. nov. ined., JX506956, JX506847, China. Primulinalobulata (W.T.Wang) Mich.Möller & A.Weber, KY394925, KF498163, China. Primulinalonggangensis (W.T.Wang) Yan Liu & Yin Z.Wang, KY394926, KY393520, China. Primulinalongicalyx (J.M.Li & Yin Z.Wang) Mich.Möller & A.Weber, KY394927, KF498175, China. Primulinalongii (Z.Y.Li) Z.Y.Li, KY394928, KF498208, China. Primulina longzhouensis (B.Pan & W.H.Wu) W.B.Xu & K.F.Chung, MK747139, MK746262, China. Primulina lunglinensis (W.T.Wang) Mich.Möller & A.Weber, KY394930, KF498216, China. Primulina lunglinensis var. amblyosepala (W.T.Wang) Mich.Möller & A.Weber, MK747105, MK746281, China. Primulina lungzhouensis (W.T.Wang) Mich.Möller & A.Weber, KY394931, KF498187, China. Primulina luochengensis (Yan Liu & W.B.Xu) Mich.Möller & A.Weber, KY394932, KY393526, China. Primulina lutea (Yan Liu & Y.G.Wei) Mich.Möller & A.Weber, KY394934, MZ675552, China. Primulina lutescens B.Pan & H.S.Ma, MK747135, MK746263, China. Primulina lutvittata F.Wen & Y.G.Wei, KY394935, KY393529, China. Primulina luzhaiensis (Yan Liu, Y.S.Huang & W.B.Xu) Mich.Möller & A.Weber, KY394936, KY393530, China. Primulina mabaensis K.F.Chung & W.B.Xu, KY394937, KY393531, China. Primulina maciejewskii F.Wen, R.L.Zhang & A.Q.Dong, KY394992, KY393623, China. Primulina macrodonta (D.Fang & D.H.Qin) Mich.Möller & A.Weber, KY394938, KF498176, China. Primulina macrorhiza (D.Fang & D.H.Qin) Mich.Möller & A.Weber, KY394939, KY393533, China. Primulina maculata W.B.Xu & J.Guo, MK747126, MK746243, China. Primulina maguanensis (Z.Yu Li, H.Jiang & H.Xu) Mich.Möller & A.Weber, MK747127, MK746267, China. Primulina malipoensis Li H.Yang & M.Kang, MK747123, MK746240, China. Primulina medica (D.Fang ex W.T.Wang) Yin Z.Wang, KY394940, MZ675553, China. Primulina melanofilamenta Y.Liu & F.Wen, MK747158, MK746277. Primulina minor F.Wen & Y.G.Wei, MK747160, MK746290, China. Primulina minutimaculata (D.Fang & W.T.Wang) Yin Z.Wang, KY394941, KY393535, China. Primulina moi F.Wen & Y.G.Wei, KY394942, KF498241, China. Primulina mollifolia (D.Fang & W.T.Wang) J.M.Li & Yin Z.Wang, KY394944, KF498189, China. Primulina multifida B.Pan & K.F.Chung, KY394946, KY393540, China. Primulinanandanensis (S.X.Huang, Y.G.Wei & W.H.Luo) Mich.Möller & A.Weber, KY394947, KF498182, China. Primulinanapoensis (Z.Yu Li) Mich.Möller & A.Weber, KY394948, KF498183, China. Primulinaningmingensis (YanLiu & W.H.Wu) W.B.Xu & K.F.Chung, KY394949, KY393543, China. Primulina obtusidentata (W.T.Wang) Mich.Möller & A.Weber, KY394950, KF498214, China. Primulina ophiopogoides (D.Fang & W.T.Wang) Yin Z.Wang, KY394951, KF498172, China. Primulina orthandra (W.T.Wang) Mich.Möller & A.Weber, MK747128, MK746286, China. Primulina parvifolia (W.T.Wang) Yin Z.Wang & J.M.Li, KY394952, KF498166, China. Primulina pengii W.B.Xu & K.F.Chung, KU220603, MZ675554, China. Primulina petrocosmeoides B.Pan & F.Wen, KY394953, KY393547, China. Primulina pinnata (W.T.Wang) Yin Z.Wang, MK747115, MK746249, China. Primulina pinnatifida (Hand.-Mazz.) Yin Z.Wang, KY394954, KF498234, China. Primulina polycephala (Chun) Mich.Möller & A.Weber, KY394956, KY393550, China. Primulina porphyria X.L.Yu & Ming Li, KY394957, KY393551, China. Primulina pseudoeburnea (D.Fang & W.T.Wang) Mich.Möller & A.Weber, KY394958, KF498169, China. Primulina pseudoglandulosa W.B.Xu & K.F.Chung, KY394888, KF498210, China. Primulina pseudoheterotricha (T.J.Zhou, B.Pan & W.B.Xu) Mich.Möller & A.Weber, MK747117, MK746291, China. Primulina pseudolinearifolia W.B.Xu & K.F.Chung, KY394933, KF498190, China. Primulina pseudomollifolia W.B.Xu & Yan Liu, JX506869, MK746280, China. Primulina pseudoroseoalba Jian Li, F.Wen & L.J.Yan, KY394959, KY393553, China. Primulina pteropoda (W.T.Wang) Yan Liu, KY394960, KF498219, China. Primulina pungentisepala (W.T.Wang) Mich. Möller & A.Weber, KY394962, KY393556, China. Primulina purpurea F.Wen, Bo Zhao & Y.G.Wei, KY394964, KY393558, China. Primulina qingyuanensis Z.L.Ning & M.Kang, KY394965, KF498162, China. Primulina renifolia (D.Fang & D.H.Qin) J.M.Li & Yin Z.Wang, KY394966, KF498171, China. Primulina repanda (W.T.Wang) Yin Z.Wang, KY394969, KF498204, China. Primulina ronganensis (D.Fang & Y.G.Wei) Mich.Möller & A.Weber, KY394970, KF498202, China. Primulina rongshuiensis (YanLiu & Y.S.Huang) W.B.Xu & K.F.Chung, KY394971, KF498203, China. Primulina roseoalba (W.T.Wang) Mich.Möller & A.Weber, KY394974, KF498251, China. Primulina rotundifolia (Hemsl.) Mich.Möller & A.Weber, KY394975, KY393569, China. Primulina rubella L.H.Yang & M.Kang, KY394976, KY393570, China. Primulina rubribracteata Z.L.Ning & M.Kang, KY394977, KY393571, China. Primulina rufipes Y.L.Su, P.Yang & Yan Liu, MZ605012.1, MZ668297, China. Primulina sclerophylla (W.T.Wang) Yan Liu, KY394979, MZ675555, China. Primulina secundiflora (Chun) Mich.Möller & A.Weber, MK747119, MK746279, China. Primulina shouchengensis (Z.Y.Li) Z.Y.Li, KY394980, KY393574, China. Primulina sichuanensis (W.T.Wang) Mich.Möller & A.Weber, MK747162, MK746264, China. Primulina sichuanensis var. pinnatipartite H.H.Kong & Li H.Yang, MK747161, MK746287, China. Primulina sinovietnamica W.H.Wu & Qiang Zhang, KY394981, KY393575, China. Primulina spadiciformis (W.T.Wang) Mich.Möller & A.Weber, MK747136, MK746283, China. Primulina spinulosa (D.Fang & W.T.Wang) Yin Z.Wang, KY395017, KF498173, China. Primulina subrhomboidea (W.T.Wang) Yin Z.Wang, KF498044, KF498237, China. Primulina subulata (W.T.Wang) Mich.Möller & A.Weber, KY395020, KF498165, China. Primulina subulata var. guilinensis (W.T.Wang) W.B.Xu & K.F.Chung, JX506941, JX506832, China. Primulina subulata var. yangchunensis (W.T.Wang) Mich.Möller & A.Weber, MK747120, MK746276, China. Primulina subulatisepala (W.T.Wang) Mich.Möller & A.Weber, MK747122, MK746246, China. Primulina suichuanensis X.L.Yu & J.J.Zhou, KY395021, KY393580, China. Primulina swinglei (Merr.) Mich.Möller & A.Weber, KY395022, KF498205, China. Primulina tabacum Hance, KY395023, KF498233, China. Primulina tenuifolia (W.T.Wang) Yin Z.Wang, KY395024, KF498167, China. Primulina tenuituba (W.T.Wang) Yin Z.Wang, KY395025, KF498213, China. Primulina tiandengensis (F.Wen & H.Tang) F.Wen & K.F.Chung, KY395027, KF498206, China. Primulinatribracteata (W.T.Wang) Mich.Möller & A.Weber, KY395019, JX506842, China. Primulina tribracteata var. zhuana (Z.Yu Li, Q.Xing & Yuan B.Li) Mich.Möller & A.Weber, JX506952, JX506843, China. Primulina tsoongii H.L.Liang, Bo Zhao & F.Wen, KY395029, KY393588, China. Primulina varicolor (D.Fang & D.H.Qin) Yin Z.Wang, KY395030, KF498200, China. Primulina verecunda (Chun) Mich.Möller & A.Weber, KY395031, KF498231, China. Primulina versicolor F.Wen, B.Pan & B.M.Wang, MK747155, MK746252, China. Primulina vestita (D.Wood) Mich.Möller & A.Weber, MK747156, MK746282, China. Primulina villosissima (W.T.Wang) Mich.Möller & A.Weber, KY395032, KF498240, China. Primulina weii Mich.Möller & A.Weber, DQ872832, DQ872811, China. Primulina wenii Jian Li & L.J.Yan, MK747148, MK746284, China. Primulina wentsaii (D.Fang & L.Zeng) Yin Z.Wang, KY395033, KF498197, China. Primulina wuae F.Wen & L.F.Fu, MK747159, MK746265, China. Primulina xinningensis (W.T.Wang) Mich.Möller & A.Weber, KY395035, KY393594, China. Primulina xiuningensis (X.L.Liu & X.H.Guo) Mich.Möller & A.Weber, KY395037, KF498252, China. Primulina xiziae F.Wen, Yue Wang & G.J.Hua, KY395038, KF498250, China. Primulina yangchunensis Y.L.Zheng & Y.F.Deng, KY395039, KF498245, China. Primulina yangshanensis W.B.Xu & B.Pan, KY395041, KY393600, China. Primulina yangshuoensis Y.G.Wei & F.Wen, KY395042, KF498211, China. Primulina yingdeensis Z.L.Ning, M.Kang & X.Y.Zhuang, KY395043, KY393602, China. Primulina yungfuensis (W.T.Wang) Mich.Möller & A.Weber, KY395045, KY393604, China. Primulina zhoui F.Wen & Z.B.Xin, MK747104, MK625698, China.

References:

Katoh, K. and D. M. Standley. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular biology and evolution 30: 772–780.