EEG Recordings for: Optogenetic stimulation of the dorsal striatum bidirectionally controls seizures
Data files
Apr 18, 2025 version files 19.19 GB
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GBL.zip
13.93 GB
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Kindling.zip
161.53 MB
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Pilocarpine.zip
5.11 GB
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Quantification.xlsx
20.44 KB
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README.md
7.07 KB
Abstract
Engagement of the basal ganglia experimental seizures was first observed almost 75 years ago. However, the role of the basal ganglia’s input nucleus, the striatum, in seizure control is relatively understudied. To address this gap, we used an optogenetic approach to activate and inactivate neurons in the dorsal striatum of rats submitted to the gamma-butyrolactone (GBL) model of absence epilepsy, amygdala kindling model of temporal lobe epilepsy, and pilocarpine-induced Status Epilepticus (SE). Open-loop (continuous light delivery) optogenetic activation of dorsal striatal neurons robustly suppressed seizures in all models. By contrast, open-loop optogenetic silencing increased absence seizure expression and facilitated SE onset but had no effect on kindled seizures. In the GBL model, we also tested the effects of closed-loop modulation (light delivery in response to seizure detection). Closed-loop activation reduced duration of spike-wave discharges (SWDs), while closed-loop inhibition increased SWD duration. This dataset includes electroencephalographic recordings for each subject and test session in the manuscript are included as european data format (.edf) files. These results demonstrated previously unrecognized anti-absence effects associated with striatal neuromodulation. These findings demonstrate a robust, bidirectional role of the dorsal striatum in the control of multiple seizure types, suggesting that the striatum is a site that can exert broad-spectrum control of seizures.
Dataset DOI: 10.5061/dryad.f7m0cfz6w
Description of the data and file structure
Files and variables
File: Kindling.zip
Description: A zip archive with folders containing European Data Format (EDF) electroencephalography (EEG) files for each test session for each subject, organized by group, stimulation frequency, and wavelength of light. Files show a single kindling session for each animal with electrographic activity recorded from a depth electrode implanted into the basolateral amygdala and stimulator feedback (when relevant) showing the timing of light delivery.
Data are organized into folders.
- "Kindling - GFP" are recordings from animals injected with a control AAV virus expressing green flourescent protein but no opsin.
- "Kindling - ChR2" are recordings from animals injected with AAV coding for channelrhodopsin-2 (ChR2) to activate the striatum.
- "Kindling - ArchT" are recordings from animals injected with AAV coding for archaerhodopsin (ArchT) to inhibit the striatum.
- Subfolders within each of these folders indicate the light stimulation delivered to the striatum ("No light" - no light was delivered; "Blue Light" indicating 450 nm light was delivered into striatum; "Green Light" indicating that 532 nm light was delivered into the striatum.
- Each file is named following the convention ANIMAL IDENTIFIER-VIRUS-Session.
File: GBL.zip
Description: A zip archive with folders containing European Data Format (EDF) electroencephalography (EEG) files for each test session for each subject, organized by group, stimulation frequency, and wavelength of light. Files show a single session for each animal with electrographic activity recorded from surface electrodes and stimulator feedback (when relevant) showing the timing of light delivery.
Data are organized into folders.
- Closed Loop - GBL
- "ArchT" - folder containing recordings from animals injected with AAV expressing ArchT to inhibit the striatum.
- "ChR2" - folder containing recordings from animals injected with AAV expressing ChR2 to activate the striatum.
- "5 Hz" - subfolder containing recordings from sessions with 5 Hz optogenetic stimulation of striatum
- "100 Hz" - subfolder containing recordings from sessions with 100 Hz optogenetic stimulation of striatum
- "GFP" - folder containing recordings from animals injected with AAV expressing GFP as a control.
- "Blue 5 Hz" - subfolder containing recordings from sessions with 5 Hz light delivery (450nm wavelength light)
- "Blue 100 Hz" - subfolder containing recordings from sessions with 100 Hz light delivery (450nm wavelength light)
- "Green 100 Hz" - subfolder containing recordings from sessions with 100 Hz light delivery (532nm wavelength light)
- Open Loop - GBL
- "GBL - ArchT" - folder containing recordings from animals injected with AAV expressing ArchT to inhibit the striatum.
- "Green Light" subfolder containing recordings from sessions with 100 Hz light delivery (532nm wavelength light) to inhibit the striatum.
- "No Light" - subfolder containing recordings from sessions with no light delivery as a control
- "GBL - ChR2" - folder containing recordings from animals injected with AAV expressing ChR2 to activate the striatum.
- "5 Hz" - subfolder containing recordings from sessions with 5 Hz optogenetic stimulation of striatum
- "100 Hz" - subfolder containing recordings from sessions with 100 Hz optogenetic stimulation of striatum
- "No Light" - subfolder containing recordings from sessions with no light delivery as a control
- "GBL - FP" - folder containing recordings from animals injected with AAV expressing GFP as a control.
- Blue Light - subfolder containing subfolders for different test sessions
- "Blue 5 Hz" - subfolder containing recordings from sessions with 5 Hz light delivery (450nm wavelength light)
- "Blue 100 Hz" - subfolder containing recordings from sessions with 100 Hz light delivery (450nm wavelength light)
- "Green 100 Hz" - subfolder containing recordings from sessions with 100 Hz light delivery (532nm wavelength light)
- "No Light" - subfolder containing recordings from sessions with no light delivery as a control
- Blue Light - subfolder containing subfolders for different test sessions
- "GBL - ArchT" - folder containing recordings from animals injected with AAV expressing ArchT to inhibit the striatum.
File: Pilocarpine.zip
Description: A zip archive with folders containing European Data Format (EDF) electroencephalography (EEG) files for each test session for each subject, organized by group, stimulation frequency, and wavelength of light. Files show the complete session from pilocarpine administration through 90 minutes post treatment, for each animal with electrographic activity recorded from surface electrodes and stimulator feedback (when relevant) showing the timing of light delivery.
Data are organized into folders:
- "Pilocarpine - GFP" are recordings from animals injected with a control AAV virus expressing green flourescent protein but no opsin.
- "Pilocarpine - ChR2" are recordings from animals injected with AAV coding for channelrhodopsin-2 (ChR2) to activate the striatum.
- "Pilocarpine - ArchT" are recordings from animals injected with AAV coding for archaerhodopsin (ArchT) to inhibit the striatum.
- Files are named according to the convention ANIMAL ID-VIRUS-TYPE OF LIGHT DELIVERED.
File: Quantification.xlsx
Description: An excel file showing the values obtained following quantification of seizures for each animal present in the parent study. The file has four sheets:
- GBL-open loop: Quantification of spike-and-wave discharges during open loop neuromodulation (and paired control trials) for all animals included in the study
- GBL-closed loop: Quantification of spike-and-wave discharges during closed loop neuromodulation (with within-session control (non stimulated) spike-and-wave discharges) for all animals included in the study.
- kindling: Quantification of electrographic seizure activity (Afterdischarge [AD] duration and behavioral seizure score) for kindling experiments for all animals in the study.
- pilocarpine: Quantification of latency to status epilepticus (SE) for pilocarpine experiments for all animals in the study.
For each of the above, animal data is organized in rows with subject identifiers (e.g., M3L) followed by data for the range of conditions the animal was tested under for each model.
Usage Notes
Several options are available for viewing EDF files:
- https://github.com/kostasrotas/EDFViewer-Desktop
- A stand alone EDF Viewer available for Windows, MacOS, and Ubuntu
- https://github.com/holgern/pyedflib
- A python-based EDF Viewer
- https://www.mathworks.com/help/signal/ref/edfread.html
- Matlab natively supports EDF viewing through the edfread command
Code/software
N/A
Access information
Other publicly accessible locations of the data:
- N/A
Data was derived from the following sources:
- N/A
