Data from: Strong assortative mating with nest site partitioning may facilitate species coexistence during secondary contact in island birds
Data files
Sep 07, 2026 version files 4.83 MB
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AgeBandingProportionDistance_mod.csv
1.24 KB
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AgeBandingProportionDistance.csv
1.21 KB
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BandingProportionDistance_mod.csv
1.23 KB
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BandingProportionDistance.csv
1.42 KB
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elev_cop30_MyzoBanding_22.csv
947 B
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elev_cop30_MyzoNests_2324.csv
5.46 KB
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myzo_alpha_updated.stan
1.02 KB
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Myzo_phenotype_distance.csv
5.90 KB
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MyzoAdultRaw.csv
1.09 KB
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MyzoBanding_22.csv
736 B
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MyzoCoastLayer.zip
4.76 MB
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MyzoCoexistAnalyses_FINAL.Rmd
21.92 KB
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MyzoMateData.csv
1.73 KB
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MyzomelaBandingRecords_Kirakira_2022.csv
15.55 KB
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MyzoNests_2324.txt
4.27 KB
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NestID_Height.csv
594 B
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README.md
5.60 KB
Abstract
Species coexistence is critical to the assembly of biodiverse communities. When closely related species come into secondary contact, competitive and reproductive interactions can both influence the potential for coexistence. We tested whether ecological and/or evolutionary factors affect coexistence dynamics in a pair of closely related honeyeaters that have come into secondary contact in the Solomon Islands. Myzomela cardinalis colonized the island of Makira and established a population in sympatry with the endemic M. tristrami. These taxa are ecologically similar and hybridize. If ecological factors are promoting coexistence, we expect species to partition where they forage for resources or defend breeding territories. In addition, evolutionary pressures may facilitate coexistence if species mate assortatively, avoiding production of potentially low-fitness hybrid offspring. Using data on foraging locations, nest locations, and mate pairing, we find support for partitioning of space use, specifically in the context of nest placement. Pairs of the recently arrived species nested significantly closer to the coastline than did endemic species pairs. We also find strong evidence of assortative mating based on phenotype. Thus, both ecological and evolutionary factors appear to contribute to the coexistence of these closely related hybridizing species.
Dataset DOI: 10.5061/dryad.fttdz0983
Description of the data and file structure
Data generated by capture and banding of individual birds and nest searching and phenotypic identification of nesting pairs of birds.
Files and variables
File: AgeBandingProportionDistance.csv
Description: proportion of individuals of adult or immature age class at each capture location.
Variables
- Location_DataSheet: location description
- distance_to_coastline: distance to coast in meters calculated using GPS coordinates
- AGE: age class, adult or immature
- count_age: count of individuals in that age class
- count_tot: total individuals captured at that location
- prop_count: proportion of individuals of that age class captured at that location
File: AgeBandingProportionDistance_mod.csv
Description: same as previous, but with zeros added for those locations where no individuals of a given age class were captured.
File: BandingProportionDistance.csv
Description
Variables
- Location_DataSheet: location description
- distance_to_coastline: distance to coast in meters calculated using GPS coordinates
- sp: species identity, card = Myzomela cardinalis, tris = Myzomela tristrami
- count_sp: count of each species identity
- count_tot: totial individuals captured at that location
- prop_count: proportion of individuals of each species captured at that location
File: BandingProportionDistance_mod.csv
Description: same as previous, but with 0s added for those locations where only one species was captured.
File: elev_cop30_MyzoBanding_22.csv
Description: banding locations with elevation
Variables
- Location_DataSheet: location description
- Location_Entered: category of coastal/inland (unused in these analyses)
- Date: date of event
- lat: latitude of sampling location
- lon: longitude of sampling location
- elev_1: elevation of sampling location in meters above sea level
File: elev_cop30_MyzoNests_2324.csv
Description: nesting locations with elevation
Variables
- NestID: nest identification code
- lat: latitude of nest
- lon: longitude of nest
- M_Pheno: phenotype of male at nest
- F_Pheno: phenotype of female at nest
- M_F: Male + Female phenotype at nest (C = M. cardinalis, T = M. tristrami, H = phenotypic hybrid)
- M_F_S: categorization of nest as homotypic (cardinalis or tristrami) or heterotypic (hybrid)
- elev_1: elevation of nest in meters above sea level
File: Myzo_phenotype_distance.csv
Description
Variables
- NestID: nest identification code
- lat: latitude of nest
- lon: longitude of nest
- M_Pheno: phenotype of male at nest
- F_Pheno: phenotype of female at nest
- M_F: Male + Female phenotype at nest (C = M. cardinalis, T = M. tristrami, H = phenotypic hybrid)
- M_F_S: categorization of nest as homotypic (cardinalis or tristrami) or heterotypic (hybrid)
- distance_to_coastline: distance in meters to nearest point on coastline from coordinates
- area: categorical coast or inland (unused in analyses)
File: myzo_alpha_updated.stan
Description: STAN script for Bayesian analyses
File: MyzoAdultRaw.csv
Description
Variables
- sp: species identity (card = M. cardinalis, tris = M. tristrami, hybrid = phenotypic hybrid)
- Area: categorical capture location (unused in analyses)
File: MyzoBanding_22.csv
Description
Variables
- Location_DataSheet: location description
- Location_Entered: categorical location (unused in analyses)
- Date: date of event
- lat: latitude of sampling location
- lon: longitude of sampling location
File: MyzoCoexistAnalyses_FINAL.Rmd
Description: R Markdown file for analyzing all data.
File: MyzoMateData.csv
Description: Input for Bayesian model
Variables
- M_Pheno: male phenotype
- F_Pheno: female phenotype
- M_F: combined male and female phenotype
File: MyzomelaBandingRecords_Kirakira_2022.csv
Description: banding data for captures in Kirakira, Makira, 2022
Variables
- SPECIES: species identity
- sp: species identity abbreviation
- BAND.: metal band number on individual
- COLOR.COMBO: color band combination for individual identification (resighting)
- TIME: capture time in HHMM, 24hr clock
- AGE: age of individual
- GAPE: color of beak gape of individual (used for aging)
- Location: location description
- Location_DataSheet: location description (some entered slightly differently on datasheet)
- Date: date of capture event
- Area: categorical capture location (unused in analyses)
File: MyzoNests_2324.txt
Description
Variables
- NestID: nest identification code
- lat: latitude of nest
- lon: longitude of nest
- M_Pheno: phenotype of male at nest
- F_Pheno: phenotype of female at nest
- M_F: Male + Female phenotype at nest (C = M. cardinalis, T = M. tristrami, H = phenotypic hybrid)
- M_F_S: categorization of nest as homotypic (cardinalis or tristrami) or heterotypic (hybrid)
File: NestID_Height.csv
Description: height of nests
Variables
- NestID: nest identification code
- Height: estimated height of nest in meters
File: MyzoCoastLayer.zip
Description: shapefiles for extracting coastline and calculating distance to coast for sampling and nest locations.
Code/software
R and assorted packages.
