Western Arctic Ocean metagenome-assembled genome catalogue
Data files
Sep 17, 2026 version files 1.03 GB
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README.md
1.79 KB
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WesternAO_MAGs-aa.zip
360.65 MB
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WesternAO_MAGs-contigs.zip
608.26 MB
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WesternAO_MAGs-gff.zip
60.74 MB
Abstract
The summer surface waters of the Arctic Ocean (AO) are among the most oligotrophic marine ecosystems on Earth. The AO is also influenced by variable sea ice and sunlight. Little is known about how marine bacteria have adapted to survive this extreme Arctic habitat. Volatile organic compounds (VOCs) are increasingly recognized as important resources for bacterial metabolism in oligotrophic oceans. Studies show that the AO is a net sink for VOCs, leading to the hypothesis that Arctic Ocean bacteria consume VOCs. To test this hypothesis, we investigated a genome catalogue of AO prokaryotes for the presence of VOC-degradation pathways. A carboxylation pathway for acetone degradation dominated the surface waters. The key enzyme (acetone carboxylase) allows bacteria to access CO2 through acetone carboxylation, suggesting a type of heterotrophic CO2 fixation may operate in the AO. The acetone-consuming bacteria were mostly represented by a single population of Porticoccus bacteria (SP-01). The genome encoded few organic carbon transporters, but proteorhodopsin genes were identified, indicating heterotrophic metabolism could be supplemented with energy from sunlight. Metatranscriptome analysis revealed that acetone carboxylase and proteorhodopsin were among the most highly expressed genes, indicating significant investment in the exploitation of acetone and sunlight in carbon and energy metabolism. From 2004 to 2017, SP-01 had a 1-8% annual average abundance, peaking in 2017, a year distinguished by a longer ice-free period. The future relevance of bacteria, such as SP-01, adapted to AO oligotrophic surface water may increase with a warming Arctic, when ice-free conditions prevail and ocean stratification and subsequent oligotrophication intensify.
https://doi.org/10.5061/dryad.g4f4qrfxk
This repository contains the contigs (WesternAO_MAGs-contigs.zip), amino acid sequences (WesternAO_MAGs-aa.zip), and genome features (WesternAO_MAGs-gff.zip) of 663 metagenome-assembled genomes (MAGs) generated from assemblies and co-assemblies of Western Arctic Ocean metagenomic samples.
Contact information
Address correspondence to David A. Walsh, david.walsh@concordia.ca.
Description of the data and file structure
The assembly and co-assembly MAGs included in this repository were of medium- and high-quality and were dereplicated at an average nucleotide identity ≥95% (i.e., species-level representatives).
MAG data include:
- Contig nucleotide sequences in FASTA format (.fa file extension);
- Amino acid sequences in FASTA format (.faa);
- Genome features in General Feature Format v. 3 (.gff).
File naming system
MAG files contain abbreviations from which assembly or co-assembly they came from.
- CB(#)-Surface: Canada Basin surface assembly
- CB(#)-20m: Canada Basin 20 m assembly
- CB(#)-SCM: Canada Basin subsurface chlorophyll maximum assembly
- CB(#)-323: Canada Basin 32.3 PSU assembly
- CB(#)-331: Canada Basin 33.1 PSU assembly
- CB(#)-Tmax: Canada Basin temperature maximum assembly
- CB(#)-1000m: Canada Basin 1000 m assembly
- CB(#)-AW: Canada Basin Atlantic water assembly
- CB(#)-Bottom: Canada Basin bottom water assembly
- AG5-323: Amundsen 32.3 PSU assembly
- AG5-331: Amundsen 33.1 PSU assembly
- AG5-Tmax: Amundsen Gulf temperature maximum assembly
- CB: Canada Basin co-assembly
- UW: Upper Water Canada Basin co-assembly
- AG: Amundsen Gulf co-assembly
