Snowfall and pond volume drive summer mountain pond dynamics in California’s Sierra Nevada
Data files
Mar 19, 2026 version files 252.15 MB
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20-22_all_tempcorrected1.csv
138.29 MB
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2020PondDepth.csv
2.76 KB
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2021PondDepth.csv
549 B
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2022PondDepth.csv
245 B
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all20_corrected.csv
23.52 MB
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all21_corrected.csv
23.31 MB
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all22_corrected.csv
6.93 MB
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comb_data.csv
195.82 KB
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lat_long.csv
938 B
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Manuscript_Code.R
21.95 KB
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mixing.R
13.90 KB
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PondCharacteristics.csv
2.20 KB
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PondMetabolism.R
97.63 KB
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README.md
28.77 KB
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sampletemps.csv
13.02 KB
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site_snowfall.csv
5.04 KB
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tokopah_all.csv
59.70 MB
Abstract
Mountain aquatic ecosystems are especially vulnerable to warming and changes in hydroclimate due to climate change. Within mountain ecosystems, ponds make up a majority of the lentic waterbodies in abundance, but are severely understudied compared to other freshwater systems. Understanding the drivers of pond biological, chemical, and physical dynamics in mountain ecosystems are critical for determining their responses to future climate change. Here, we performed a field survey of 30 ponds over four summers (2020-2023) in California’s Sierra Nevada to understand how pond dynamics (temperature, water chemistry, primary production, and zooplankton community) are driven by environmental variables. Ponds varied in volume (4 to 3361 m3), elevation (2299 to 3444 m), and snowfall, where we captured years of relatively low snowfall (361 to 803 mm) and one of the highest snowfall years on record (1447 to 3002 mm). We found that snowfall was a dominant driver of pond dynamics during the ice-free season, similar to mountain lakes. Higher snowfall increased pond volume during the ice-free season, which was associated with a decrease in mean temperatures and thermal variability, a decrease in nutrient concentrations, and a decrease in zooplankton abundance. Sierra Nevada ponds mixed almost every night, unlike low-elevation temperate ponds of similar volume. Our results suggest that montane ponds do not fit previously defined pond paradigms. With the Sierra Nevada predicted to lose 70% of their snowpack by 2100, it is increasingly important to understand the impact of hydroclimate on its understudied ponds. For ponds that are able to persist with lower snowfall, they may be warmer, more thermally variable, with higher nutrients, primary productivity, and therefore higher zooplankton concentrations.
Dataset DOI: 10.5061/dryad.gmsbcc33j
Description of the data and file structure
30 ponds were sampled between June and September from 2020 to 2023. Not all sites were sampled each year, and the number of samples varied per year. For abiotic factors, we sampled water chemistry (pH, conductivity, salinity, dissolved oxygen, total dissolved solids, total nitrogen, and total phosphorus), temperature, surface area, and depth of the ponds. For biotic factors, we sampled chlorophyll-a, GPP, and zooplankton. A full description of the methods can be found in the associated manuscript.
Files and variables
Note 1: for all files, missing values are indicated with "NA"
Note 2: for many of the files, there are several columns that were not included in the analyses for this manuscript, but have been kept in case they are helpful for others
File: lat_long.csv
Description: A list of the Latitudes and Longitudes of the sites, used to retrieve data from the GRIDMET dataset.
Variables
- Site: factor denoting the name of the sample site
- Lat: numeric describing the latitude of the site
- Long: numeric describing the longitude of the site
File: Manuscript_Code.R
Description: This code was used for the statistical analyses and figures of the manuscript.
File: comb_data.csv
Description: This file provides the data for the water chemistry, productivity, and zooplankton analyses.
Variables
- Site: factor denoting the name of the sample site
- Dataset: factor denoting which person collected the data
- Date: date of sampling point in format mm/dd/yy
- Year: year of sampling point in format yyyy
- Habitat: factor denoting the general description of the type of habitat of the site
- Jurisdiction: factor denoting which area the site is in (YOSE = Yosemite National Park; INYO = Inyo County; SEKI = Sequoia & Kings Canyon National Park)
- Lat: numeric describing the latitude of the site
- Long: numeric describing the longitude of the site
- Elevation_m: numeric describing the elevation (m) of the site
- Area_m2: numeric describing the surface area (m2) of the site
- Maxdepth_m: numeric describing the maximum depth (m) of the site across all sampling dates
- Total_N_μmol/L: numeric describing the total nitrogen (μmol/L) of the site at that sampling date
- Total_P_μmol/L: numeric describing the total phosphorus (μmol/L) of the site at that sampling date
- DOC_uM: numeric describing the dissolved organic carbon (μM) of the site at that sampling date
- ChlConc_ug/L: numeric describing the chorophyll-a concentration (μg/L) of the site at that sampling date, collected using the methods described in the manuscript
- Sample: numeric describing the sample number for samples collected by CCB
- Time: time of sample collection in format hh:mm:ss
- Depth_m: numeric describing the depth (m) of the site at that sampling date
- Repeat: please disregard
- Chla_ysi_ug_L: numeric describing the chorophyll-a concentration (μg/L) of the site at that sampling date, collected by the EXO3 sonde probe (these measurements were not used in the analyses)
- Conductivity_uS_cm: numeric describing the conductivity (μS/cm) of the site at that sampling date
- Sp_conductivity_uS_cm: numeric describing the specific conductivity (μS/cm) of the site at that sampling date
- DO_percent: numeric describing the DO (%) of the site at that sampling date
- DO_mg_L: numeric describing the DO (mg/L) of the site at that sampling date
- Salinity_psu: numeric describing the salinity (psu) of the site at that sampling date
- Phyco_RFU: numeric describing the phycocyanin (RFU) of the site at that sampling date
- TDS_mg_L: numeric describing the total dissolved solids (mg/L) of the site at that sampling date
- pH: numeric describing the pH of the site at that sampling date
- Temp: numeric describing the temperature (°C) of the site at the specific time of sampling
- Chla_vol_mL: numeric describing the volume (mL) of water used for the chlorophyll-a sample of the site at that sampling date
- Zoop_Tow_m: numeric describing the depth of tow (m) for the zooplankton sample of the site at that sampling date
- halftow: numeric describing if the zooplankton tow taken was horizontal (0.5) or traditional vertical tow (NA) for that site at that sampling date
- Macro_pelagic_dirt_rock_sweeps: please disregard
- Macro_pelagic_grassy_sweeps: please disregard
- Macro_pelagic_total: please disregard
- Macro_benthic_dirt_rock_sweeps: please disregard
- Macro_benthic_grassy_sweeps: please disregard
- Macro_benthic_total: please disregard
- Periphtyon_rfu: please disregard
- alo: numeric describing the number of Alona spp. per Liter of the zooplankton sample of the site at that date
- asc: numeric describing the number of Ascomorpha spp. per Liter of the zooplankton sample of the site at that date
- asp: numeric describing the number of Asplanchna spp. per Liter of the zooplankton sample of the site at that date
- bos: numeric describing the number of* Bosmina spp.* per Liter of the zooplankton sample of the site at that date
- csp: numeric describing the number of* Chydorus sphaericus *per Liter of the zooplankton sample of the site at that date
- clat: numeric describing the number of Ceriodaphnia laticaudata per Liter of the zooplankton sample of the site at that date
- nau: numeric describing the number of nauplii per Liter of the zooplankton sample of the site at that date
- daph: numeric describing the number of Daphnia dentifera per Liter of the zooplankton sample of the site at that date
- dbra: numeric describing the number of* Diaphanosoma brachyurum *per Liter of the zooplankton sample of the site at that date
- eagi: numeric describing the number of Eucyclops agilis per Liter of the zooplankton sample of the site at that date
- harp: numeric describing the number of *Harpacticoida spp. *per Liter of the zooplankton sample of the site at that date
- hgib: numeric describing the number of *Holopedium gibberum *per Liter of the zooplankton sample of the site at that date
- hsho: numeric describing the number of *Harpacticoida spp. *per Liter of the zooplankton sample of the site at that date
- cuni: numeric describing the number of *Conochilus unicornis *per Liter of the zooplankton sample of the site at that date
- col: numeric describing the number of *Collotheca spp. *per Liter of the zooplankton sample of the site at that date
- kel: numeric describing the number of *Kellicottia spp. *per Liter of the zooplankton sample of the site at that date
- ker: numeric describing the number of *Keratella spp. *per Liter of the zooplankton sample of the site at that date
- lec: numeric describing the number of *Lecane spp. *per Liter of the zooplankton sample of the site at that date
- lep: numeric describing the number of *Lepadella spp. *per Liter of the zooplankton sample of the site at that date
- not: numeric describing the number of *Notholca spp. *per Liter of the zooplankton sample of the site at that date
- poly: numeric describing the number of *Polyarthra spp. *per Liter of the zooplankton sample of the site at that date
- lsign: numeric describing the number of *Leptodiaptomus signicauda *per Liter of the zooplankton sample of the site at that date
- mac: numeric describing the number of* Macrothorix spp. *per Liter of the zooplankton sample of the site at that date
- ost: numeric describing the number of *Ostracod spp. *per Liter of the zooplankton sample of the site at that date
- pped: numeric describing the number of* Polyphemus pediculus *per Liter of the zooplankton sample of the site at that date
- smuc: numeric describing the number of *Scapholeberis mucronata *per Liter of the zooplankton sample of the site at that date
- sserr: numeric describing the number of *Simocephalus serrulatus *per Liter of the zooplankton sample of the site at that date
- tri: numeric describing the number of *Trichocerca spp. *per Liter of the zooplankton sample of the site at that date
- synch: numeric describing the number of *Synchaeta spp. *per Liter of the zooplankton sample of the site at that date
- plat: numeric describing the number of *Platyias spp. *per Liter of the zooplankton sample of the site at that date
- hex: numeric describing the number of *Hexarthra spp. *per Liter of the zooplankton sample of the site at that date
- mono: numeric describing the number of *Monostyla spp. *per Liter of the zooplankton sample of the site at that date
- ephip: numeric describing the number of** ephippia* *per Liter of the zooplankton sample of the site at that date
- chir: numeric describing the number of** chironomids* *per Liter of the zooplankton sample of the site at that date
- stone: numeric describing the number of** stoneflies* *per Liter of the zooplankton sample of the site at that date
- tot_abund: numeric describing the total number of* zooplankton *per Liter of the zooplankton sample of the site at that date
- rotifers: numeric describing the total number of** rotifers* *per Liter of the zooplankton sample of the site at that date
- copepods: numeric describing the total number of** copepods* *per Liter of the zooplankton sample of the site at that date
- cladocerans: numeric describing the total number of cladocerans* *per Liter of the zooplankton sample of the site at that date
- benthic_sweeps: numeric describing the number of benthic macroinvertebrate sweeps performed at the site at sampling time
- pelagic_sweeps: numeric describing the number of pelagic macroinvertebrate sweeps performed at the site at sampling time
- p.chir.larv: numeric describing the total number of chironomid larvae in the pelagic sweeps performed at the site at sampling time
- p.chir.pup: numeric describing the total number of chironomid pupae in the pelagic sweeps performed at the site at sampling time
- p.dyt.larv: numeric describing the total number of dytiscid beetle larvae in the pelagic sweeps performed at the site at sampling time
- p.agapus: numeric describing the total number of Agabus spp. in the pelagic sweeps performed at the site at sampling time
- p.terr: numeric describing the total number of terrestrial insects in the pelagic sweeps performed at the site at sampling time
- p.gerr.juv: numeric describing the total number of juvenile Gerridae in the pelagic sweeps performed at the site at sampling time
- p.gerr: numeric describing the total number of adult Gerridae in the pelagic sweeps performed at the site at sampling time
- p.gerr.small: numeric describing the total number of a smaller Gerridae species in the pelagic sweeps performed at the site at sampling time
- p.kirbyi.juv: numeric describing the total number of juvenile Notonecta kirbyi in the pelagic sweeps performed at the site at sampling time
- p.kirbyi.adu: numeric describing the total number of adult Notonecta kirbyi in the pelagic sweeps performed at the site at sampling time
- p.cor.juv: numeric describing the total number of juvenile Corixidae in the pelagic sweeps performed at the site at sampling time
- p.cor.adu: numeric describing the total number of adult Corixidae in the pelagic sweeps performed at the site at sampling time
- p.darner: numeric describing the total number of darner dragonfly larvae in the pelagic sweeps performed at the site at sampling time
- p.skimmer: numeric describing the total number of skimmer dragonfly larvae in the pelagic sweeps performed at the site at sampling time
- p.clam: numeric describing the total number of clams in the pelagic sweeps performed at the site at sampling time
- p.snail: numeric describing the total number of snails in the pelagic sweeps performed at the site at sampling time
- p.occidens.larv: numeric describing the total number of Sialis occidens in the pelagic sweeps performed at the site at sampling time
- p.hydra: numeric describing the total number of Hydrachna spp. in the pelagic sweeps performed at the site at sampling time
- p.dams: numeric describing the total number of damselfy larvae in the pelagic sweeps performed at the site at sampling time
- p.mayfly: numeric describing the total number of mayfly larvae in the pelagic sweeps performed at the site at sampling time
- p.gyrinus.juv: numeric describing the total number of juvenile Gyrinus spp in the pelagic sweeps performed at the site at sampling time
- p.gyrinus.adu: numeric describing the total number of adult Gyrinus spp. in the pelagic sweeps performed at the site at sampling time
- p.acilius: numeric describing the total number of adult Acilius spp. in the pelagic sweeps performed at the site at sampling time
- p.chaeboridae: numeric describing the total number of Chaoboridae larvae in the pelagic sweeps performed at the site at sampling time
- p.limnephilidae: numeric describing the total number of Limnephilidae larvae in the pelagic sweeps performed at the site at sampling time
- p.tricho.small: numeric describing the total number of Trichoptera larvae of a small species in the pelagic sweeps performed at the site at sampling time
- p.tricho.unknown: numeric describing the total number of Trichoptera larvae of unknown species in the pelagic sweeps performed at the site at sampling time
- p.tabanidae: numeric describing the total number of Tabanidae larvae in the pelagic sweeps performed at the site at sampling time
- p.culi: numeric describing the total number of Culicinae larvae in the pelagic sweeps performed at the site at sampling time
- p.hydroph: numeric describing the total number of adult Hydrophilidae in the pelagic sweeps performed at the site at sampling time
- p.hirudinea: numeric describing the total number of Hirudinea in the pelagic sweeps performed at the site at sampling time
- p.oligo: numeric describing the total number of Oligochaeta in the pelagic sweeps performed at the site at sampling time
- p.anostraca: numeric describing the total number of Anostraca in the pelagic sweeps performed at the site at sampling time
- p.hyalellidae: numeric describing the total number of Hyalellidae in the pelagic sweeps performed at the site at sampling time
- p.ceratopo: numeric describing the total number of Ceratopogonidae larvae in the pelagic sweeps performed at the site at sampling time
- b.chir.larv: numeric describing the total number of chironomid larvae in the benthic sweeps performed at the site at sampling time
- b.chir.pup: numeric describing the total number of chironomid pupae in the benthic sweeps performed at the site at sampling time
- b.ceratopo: numeric describing the total number of Ceratopogonidae larvae in the benthic sweeps performed at the site at sampling time
- b.dyt.larv: numeric describing the total number of dytiscid beetle larvae in the benthic sweeps performed at the site at sampling time
- b.agapus: numeric describing the total number of Agabus spp. in the benthic sweeps performed at the site at sampling time
- b.gerr.juv: numeric describing the total number of juvenile Gerridae in the benthic sweeps performed at the site at sampling time
- b.gerr.adu: numeric describing the total number of adult Gerridae in the benthic sweeps performed at the site at sampling time
- b.occidens.larv: numeric describing the total number of Sialis occidens in the benthic sweeps performed at the site at sampling time
- b.cor.juv: numeric describing the total number of juvenile Corixidae in the benthic sweeps performed at the site at sampling time
- b.cor.adu: numeric describing the total number of adult Corixidae in the benthic sweeps performed at the site at sampling time
- b.clam: numeric describing the total number of clams in the benthic sweeps performed at the site at sampling time
- b.snail: numeric describing the total number of snails in the benthic sweeps performed at the site at sampling time
- b.culi: numeric describing the total number of Culicinae larvae in the benthic sweeps performed at the site at sampling time
- b.oligo: numeric describing the total number of Oligochaeta in the benthic sweeps performed at the site at sampling time
- b.kirbyi.juv: numeric describing the total number of juvenile Notonecta kirbyi in the benthic sweeps performed at the site at sampling time
- b.kirbyi.adu: numeric describing the total number of adult Notonecta kirbyi in the benthic sweeps performed at the site at sampling time
- b.mayfly: numeric describing the total number of mayfly larvae in the benthic sweeps performed at the site at sampling time
- b.dams: numeric describing the total number of damselfly larvae in the benthic sweeps performed at the site at sampling time
- b.darner: numeric describing the total number of darner dragonfly larvae in the benthic sweeps performed at the site at sampling time
- b.skimmer: numeric describing the total number of skimmer dragonfly larvae in the benthic sweeps performed at the site at sampling time
- b.tabanidae: numeric describing the total number of Tabanidae larvae in the benthic sweeps performed at the site at sampling time
- b.limnephilidae: numeric describing the total number of Limnephilidae larvae in the benthic sweeps performed at the site at sampling time
- b.trichop.small: numeric describing the total number of Trichoptera larvae of a small species in the benthic sweeps performed at the site at sampling time
- b.tricho.unknown: numeric describing the total number of Trichoptera larvae of unknown species in the benthic sweeps performed at the site at sampling time
- b.gyrinus.larv: numeric describing the total number of Gyrinus spp larvae in the benthic sweeps performed at the site at sampling time
- b.gyrinus.adu: numeric describing the total number of adult Gyrinus spp in the benthic sweeps performed at the site at sampling time
- b.terr: numeric describing the total number of terrestrial insects in the benthic sweeps performed at the site at sampling time
- b.chaeboridae: numeric describing the total number of Chaoboridae larvae in the benthic sweeps performed at the site at sampling time
- b.acilius: numeric describing the total number of adult Acilius spp. in the benthic sweeps performed at the site at sampling time
- b.hirudinea: numeric describing the total number of Hirudinea in the benthic sweeps performed at the site at sampling time
- b.hyalellidae: numeric describing the total number of Hyalellidae in the benthic sweeps performed at the site at sampling time
- b.hydroph: numeric describing the total number of adult Hydrophilidae in the benthic sweeps performed at the site at sampling time
- macroshannon: numeric describing the Shannon diversity of the total macroinvertebrate community
- benthicshannon: numeric describing the Shannon diversity of the benthic macroinvertebrate community
- pelagicshannon: numeric describing the Shannon diversity of the pelagic macroinvertebrate community
- species: numeric describing the species richness of the zooplankton sample of the site at that date
- avg_depth.x: numeric describing the average depth (m) of the site across all of its sampling points
- avg_depth.y: numeric describing the average depth (m) of the site across all of its sampling points (duplicate)
- Phosphate_μmol/L: numeric describing the concentration of phosphate (μmol/L) of the site at that sampling date
- Silicate_μmol/L: numeric describing the concentration of silicate (μmol/L) of the site at that sampling date
- N+N_μmol/L: numeric describing the concentration of nitrate plus nitrite (μmol/L) of the site at that sampling date
- Ammonia_μmol/L: numeric describing the concentration of ammonia (μmol/L) of the site at that sampling date
- DOC_ppm: numeric describing the concentration of dissolved organic carbon (ppm) of the site at that sampling date
- PheoConc_ug/L: numeric describing the concentration of pheopigments (μg/L) of the site at that sampling date
- Pheo+Chl_μg/L: numeric describing the concentration of pheopigments and chlorophyll-a (μg/L) of the site at that sampling date
- PC_μg/L: numeric describing the concentration of particulate carbon (μg/L) of the site at that sampling date
- PN_μg/L: numeric describing the concentration of particulate nitrogen (μg/L) of the site at that sampling date
- TN_TP: numeric describing the ratio of total nitrogen to total phosphorus of the site at that sampling date
- Day: date of the sampling point in format mm/dd/yy, but with year set to all the same year in order to be able to create figures comparing years to each other
File: sampletemps.csv
Description: This file contains the summaries of the sites' temperatures from 7 days before and 7 days after each sampling point.
Variables
- Date: date of sampling in format mm/dd/yy
- Site: factor denoting the name of the sample site
- mean_temp: numeric describing the mean temperature (C) of the site for 7 days before 7 days after the sampling point
- max_temp: numeric describing the maximum temperature (C) of the site for 7 days before 7 days after the sampling point
- min_temp: numeric describing the minimum temperature (C) of the site for 7 days before 7 days after the sampling point
- avg_range: numeric describing the average temperature range (C) of the site for 7 days before 7 days after the sampling point
File: site_snowfall.csv
Description: This file contains the snow water equivalent (SWE) for each site for each year.
Variables
- water_year: date describing the beginning of the water year (Oct 1 - Sept 30) in format yyyy
- Site: factor denoting the name of the site
- total_snowfall: numeric describing the snow water equivalent (mm) for that year
File: 2020PondDepth.csv
Description: This file contains the depth values for sites where GPP was measured for 2020.
Variables
- SiteName: factor denoting the name of the site
- GMT.08.00: date of sampling in format mm/dd/yy h:mm
- MaxDepth: maximum depth (m) of the site at that sampling date
File: 2021PondDepth.csv
Description: This file contains the depth values for sites where GPP was measured for 2021.
Variables
- SiteName: factor denoting the name of the site
- GMT.08.00: date of sampling in format mm/dd/yy h:mm
- MaxDepth: maximum depth (m) of the site at that sampling date
File: 2022PondDepth.csv
Description: This file contains the depth values for sites where GPP was measured for 2022.
Variables
- SiteName: factor denoting the name of the site
- GMT.08.00: date of sampling in format mm/dd/yy h:mm
- MaxDepth: maximum depth (m) of the site at that sampling date
File: PondCharacteristics.csv
Description: This file contains the site characteristics for sites where GPP was measured.
Variables
- SiteName: factor denoting the name of the site
- Lat: numeric describing the latitude of the site
- Lon: numeric describing the longitude of the site
- SurfaceArea: numeric describing the surface area (m2) of the site
- YearSampled: date describing the year sampled for that site in format yyyy
- Elevation: numeric describing the elevation (m) of the site
- MaxDepth: maximum depth (m) of the site across all sampling dates
- Kd_mean: numeric describing the diffuse attenuation coefficient
File: all22_corrected.csv
Description: This file contains the data necessary for the GPP measurements for 2022.
Variables
- X: please disregard
- SiteName: factor denoting the name of the site
- GMT.08.00: date of sampling in format mm/dd/yy h:mm
- Temperature: numeric describing the temperature (C) of the site at indicated position at sampling time
- InstrumentType: factor denoting if the instrument was a Minidot, conductivity sensor, or light logger
- IntensityLux: numeric describing the light intensity (Lux) in air (above the surface of the pond)
- Position: factor denoting if instrument was at the top or bottom of the site
- Dissolved.Oxygen: numeric denoting dissolved oxygen (mg/L) of the site at sampling time
- Dissolved.Oxygen.Saturation: numeric denoting dissolved oxygen (%) of the site at sampling time
- Conductivity: numeric denoting the conductivity (µS/cm) of the site at sampling time
File: mixing.R
Description: This R code was used for the analyses on the mixing of the sites.
File: PondMetabolism.R
Description: This R code was used for the analyses on the GPP of the sites.
File: all20_corrected.csv
Description: This file contains the data necessary for the GPP measurements for 2020.
Variables
- SiteName: factor denoting the name of the site
- GMT.08.00: date of sampling in format mm/dd/yy h:mm
- Temperature: numeric describing the temperature (C) of the site at indicated position at sampling time
- InstrumentType: factor denoting if the instrument was a Minidot, conductivity sensor, or light logger
- IntensityLux: numeric describing the light intensity (Lux) in air (above the surface of the pond)
- Position: factor denoting if instrument was at the top or bottom of the site
- Dissolved.Oxygen: numeric denoting dissolved oxygen (mg/L) of the site at sampling time
- Dissolved.Oxygen.Saturation: numeric denoting dissolved oxygen (%) of the site at sampling time
- Conductivity: numeric denoting the conductivity (µS/cm) of the site at sampling time
File: all21_corrected.csv
Description: This file contains the data necessary for the GPP measurements for 2021.
Variables
- GMT.08.00: date of sampling in format mm/dd/yy h:mm
- InstrumentType: factor denoting if the instrument was a Minidot, conductivity sensor, or light logger
- Position: factor denoting if instrument was at the top or bottom of the site
- Temperature: numeric describing the temperature (C) of the site at indicated position at sampling time
- SiteName: denoting the name of the site
- Dissolved.Oxygen: numeric denoting dissolved oxygen (mg/L) of the site at sampling time
- Dissolved.Oxygen.Saturation: numeric denoting dissolved oxygen (%) of the site at sampling time
- Conductivity: numeric denoting the conductivity (µS/cm) of the site at sampling time
- SampleDate: date of sample in format mm/dd/yy
- AirTemperature: numeric describing the temperature (C) at sampling time
- IntensityLux: numeric describing the light intensity (Lux) in air (above the surface of the pond)
File: tokopah_all.csv
Description: This file contains data used for the GPP analyses.
Variables
- SiteName: denoting the name of the site
- GMT.08.00: date of sampling in format mm/dd/yy h:mm
- Temperature: numeric describing the temperature (C) of the site at indicated position at sampling time
- InstrumentType: factor denoting if the instrument was a Minidot, conductivity sensor, or light logger
- IntensityLux: numeric describing the light intensity (Lux) in air (above the surface of the pond)
- Position: factor denoting if instrument was at the top or bottom of the site
- Dissolved.Oxygen: numeric denoting dissolved oxygen (mg/L) of the site at sampling time
- Dissolved.Oxygen.Saturation: numeric denoting dissolved oxygen (%) of the site at sampling time
- Conductivity: numeric denoting the conductivity (µS/cm) of the site at sampling time
- SampleDate: date of sample in format mm/dd/yy
- AirTemperature: numeric describing the temperature (C) at sampling time
- InsensityLux: numeric describing the light intensity (Lux) in air (above the surface of the pond)
File: 20-22_all_tempcorrected1.csv
Description: This file contains the data used for the pond mixing analyses.
Variables
- SiteName: factor denoting the name of the site
- GMT.08.00: date of sampling in format mm/dd/yy h:mm
- Temperature: numeric describing the temperature (C) of the site at indicated position at sampling time
- Position: factor denoting if instrument was at the top or bottom of the site
- InstrumentType: factor denoting if the instrument was a Minidot, conductivity sensor, or light logger
- IntensityLux: numeric describing the light intensity (Lux) in air (above the surface of the pond)
- Dissolved.Oxygen: numeric denoting dissolved oxygen (mg/L) of the site at sampling time
- Dissolved.Oxygen.Saturation: numeric denoting dissolved oxygen (%) of the site at sampling time
- Conductivity: numeric denoting the conductivity (µS/cm) of the site at sampling time
- datetime: date of sampling in format mm/dd/yy h:mm
- AirTemperature: numeric describing the temperature (C) at sampling time
Code/software
All data/scripts can be run in R studio. Each script has the necessary packages listed at the top of the script.
