Data and code from: Habitat loss reshuffles ecological and evolutionary interactions in a seed dispersal network
Data files
Jun 05, 2026 version files 1.77 MB
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dados_mean.csv
21.52 KB
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occurrence.csv
11.93 KB
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output.nex
1.73 MB
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README.md
4.17 KB
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Script.R
6.27 KB
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traits.csv
1.78 KB
Abstract
This dataset includes occurrence data from frugivorous birds that eat Euterpe edulis fruits, traits related to seed dispersal of these species, phylogenetic tree of these frugivores, and R code to perform the analysis of the paper. The data came from published papers, theses, and master's dissertations. The data contains the presence-absence of species that forage on E. edulis in different locations in the Atlantic Forest, traits of these species, such as body mass (g), degree of frugivory (%), beak width (mm), foraging status (%). Also, the data contains the percentage of forest cover at different scales (from 250 to 2000 meters). Using the well-known frugivory system of Euterpe edulis, an emblematic palm species of the Atlantic forest, and its avian frugivores, we investigated how habitat loss influenced both ecological and evolutionary history across 150 forest remnants within the palm’s potential distribution range. Our study showed that landscape-scale forest loss reduces the diversity of birds that interact with Euterpe edulis, including those with distinct evolutionary histories. We showed that each one percent forest loss reduces 50 thousand years of evolutionary distinct interactions in this mutualistic system, while simultaneously reducing their phylogenetic and functional diversity. Specifically, frugivores with large gape size and those that forage on mid-high and canopy strata are negatively affected, whereas ground foraging species are positively affected. These shifts likely reduce the quality of seed dispersal and may compromise plant recruitment. Thus, habitat loss not only simplifies interaction networks but also undermines a key mutualism by selectively eliminating functionally and phylogenetically important partners of E. edulis.
Dataset DOI: 10.5061/dryad.h1893202h
Description of the data and file structure
This data came from the paper Habitat loss reshuffles ecological and evolutionary interactions in a seed dispersal network, published in the journal Oikos. We provide occurrence data, mean values from different variables used in the paper, traits of species, a phylogenetic tree and R code.
Files and variables
File: dados_mean.csv
Description:
Variables
- ID_site: Identification of the sites
- evol_dist: evolutionary distinctness
- FDis: functional diversity
- pd.obs.z: standardized phylogenetic diversity
- FC_250: percentage of forest cover at radius 250 meters
- FC_500: percentage of forest cover at radius 500 meters
- FC_750: percentage of forest cover at radius 750 meters
- FC_1000: percentage of forest cover at radius 1000 meters
- FC_1500: percentage of forest cover at radius 1500 meters
- FC_2000: percentage of forest cover at radius 2000 meters
- frugivory: degree of frugivory (%)
- body_mass: body mass (g)
- HWI: Hand wing index (mm)
- Beak_Width: beak width (mm)
- ForStrat_ground: percentage of time foraging on ground (%)
- ForStrat_understory: percentage of time foraging on understory (%)
- ForStrat_midhigh: percentage of time foraging on mid-high (%)
- ForStrat_canopy: percentage of time foraging on canopy (%)
File: occurrence.csv
Description:
Variables
- Site/species: Study locations in rows and species occurrence in column
- Pipile_jacutinga: bird species
- Aramides_cajanea: bird species
- Baryphthengus_ruficapillus: bird species
- Carpornis_cucullata: bird species
- Celeus_flavescens: bird species
- Crax_blumenbachii: bird species
- Lipaugus_lanioides: bird species
- Lipaugus_vociferans: bird species
- Megarynchus_pitangua: bird species
- Mimus_saturninus: bird species
- Myiodynastes_maculatus: bird species
- Oxyruncus_cristatus: bird species
- Penelope_obscura: bird species
- Penelope_superciliaris: bird species
- Pitangus_sulphuratus: bird species
- Procnias_nudicollis: bird species
- Pteroglossus_aracari: bird species
- Pteroglossus_bailloni: bird species
- Pyroderus_scutatus: bird species
- Ramphastos_dicolorus: bird species
- Ramphastos_toco: bird species
- Ramphastos_vitellinus: bird species
- Saltator_similis: bird species
- Selenidera_maculirostris: bird species
- Tityra_cayana: bird species
- Trogon_rufus: bird species
- Trogon_surrucura: bird species
- Trogon_viridis: bird species
- Turdus_albicollis: bird species
- Turdus_amaurochalinus: bird species
- Turdus_flavipes: bird species
- Turdus_fumigatus: bird species
- Turdus_leucomelas: bird species
- Turdus_rufiventris: bird species
- Turdus_subalaris: bird species
File: Script.R
Description: Code to perform the analysis
File: traits.csv
Description: traits of species
Variables
- species: list of species
- frugivory: degree of frugivory
- body_mass: body mass
- HWI: hand-wing-index
- Beak_Width: beak width
- ForStrat_ground: percentage of time spent foraging on ground
- ForStrat_understory: percentage of time spent foraging on understory
- ForStrat_midhigh: percentage of time spent foraging on mid-high
- ForStrat_canopy: percentage of time spent foraging on canopy
File: output.nex
Description: phylogenetic tree of species
Code/software
This code runs in the R software R version 4.5.3 (2026-03-11 ucrt).
The code contains the necessary steps to import the datasets and run the analysis.
You will need to load the following packages:
phangorn
ape
FD
phytools
picante
ggplot2
openxlsx
MuMIn
performance
tidyverse
Access information
Other publicly accessible locations of the data:
- This data is publicly accessible in Dryad.
Data was derived from the following sources:
- Data was derived from https://doi.org/10.1002/ecy.2119 and from other published papers, all cited in the paper.
